AlfalfaGEDB | MS.gene35102

M. sativa cultivar XinJiangDaYe / MS.gene35102

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363
PFAM: PF01565.26 PF08031.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35102.t1	XP_013457288.1	95.7	540	23	0	1	540	1	540	2.60E-301	1043.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35102.t1	Q33DQ2	49.5	535	262	4	7	535	8	540	2.1e-153	543.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35102.t1	G8A1B7	95.7	540	23	0	1	540	1	540	1.9e-301	1043.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052225	MS.gene35102	0.848898	4.57E-60	-1.69E-46
MS.gene054585	MS.gene35102	0.807849	4.13E-50	-1.69E-46
MS.gene060359	MS.gene35102	0.810977	8.81E-51	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene35102	MS.gene35106	PPI
MS.gene35106	MS.gene35102	PPI
MS.gene36439	MS.gene35102	PPI
MS.gene35102	MS.gene51646	PPI
MS.gene28727	MS.gene35102	PPI
MS.gene35104	MS.gene35102	PPI
MS.gene35102	MS.gene36435	PPI
MS.gene35102	MS.gene028354	PPI
MS.gene35105	MS.gene35102	PPI
MS.gene36438	MS.gene35102	PPI
MS.gene003357	MS.gene35102	PPI
MS.gene28724	MS.gene35102	PPI
MS.gene51644	MS.gene35102	PPI
MS.gene35102	MS.gene35103	PPI
MS.gene35102	MS.gene36437	PPI
MS.gene35102	MS.gene028357	PPI
MS.gene028347	MS.gene35102	PPI
MS.gene35102	MS.gene56278	PPI
MS.gene35102	MS.gene028346	PPI
MS.gene35102	MS.gene63535	PPI
MS.gene02146	MS.gene35102	PPI
MS.gene63533	MS.gene35102	PPI
MS.gene35102	MS.gene28725	PPI
MS.gene35113	MS.gene35102	PPI
MS.gene36421	MS.gene35102	PPI
MS.gene009481	MS.gene35102	PPI
MS.gene28726	MS.gene35102	PPI
MS.gene28717	MS.gene35102	PPI
MS.gene28723	MS.gene35102	PPI
MS.gene35114	MS.gene35102	PPI
MS.gene028352	MS.gene35102	PPI
MS.gene35102	MS.gene28742	PPI
MS.gene63532	MS.gene35102	PPI
MS.gene28742	MS.gene35102	PPI
MS.gene36445	MS.gene35102	PPI
MS.gene35102	MS.gene028353	PPI
MS.gene35102	MS.gene56282	PPI
MS.gene35102	MS.gene51643	PPI
MS.gene35102	MS.gene047977	PPI
MS.gene009479	MS.gene35102	PPI
MS.gene35102	MS.gene36444	PPI
MS.gene028369	MS.gene35102	PPI
MS.gene35083	MS.gene35102	PPI
MS.gene35102	MS.gene56279	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35102.t1	MTR_4g094478	95.741	540	23	0	1	540	1	540	0.0	1043
MS.gene35102.t1	MTR_4g094480	84.831	534	81	0	1	534	1	534	0.0	924
MS.gene35102.t1	MTR_4g094488	80.410	536	103	1	1	534	1	536	0.0	886
MS.gene35102.t1	MTR_4g094492	77.022	544	120	2	1	541	1	542	0.0	852
MS.gene35102.t1	MTR_4g094495	77.180	539	118	2	1	534	1	539	0.0	850
MS.gene35102.t1	MTR_4g094418	71.330	436	120	2	104	535	1	435	0.0	660
MS.gene35102.t1	MTR_2g031560	51.711	526	250	2	10	535	2	523	0.0	566
MS.gene35102.t1	MTR_2g031390	52.250	511	237	5	30	538	27	532	0.0	561
MS.gene35102.t1	MTR_3g009880	53.422	526	235	6	11	535	4	520	0.0	551
MS.gene35102.t1	MTR_2g031590	53.073	537	244	5	2	535	1	532	0.0	549
MS.gene35102.t1	MTR_3g009760	52.182	527	242	5	11	535	4	522	0.0	548
MS.gene35102.t1	MTR_3g009820	52.182	527	242	5	11	535	4	522	0.0	547
MS.gene35102.t1	MTR_4g094498	56.287	501	212	3	35	535	41	534	0.0	546
MS.gene35102.t1	MTR_2g031420	54.143	519	223	7	18	535	23	527	0.0	534
MS.gene35102.t1	MTR_4g094520	52.142	537	242	7	1	535	9	532	0.0	530
MS.gene35102.t1	MTR_4g094518	53.346	508	230	5	30	535	28	530	0.0	528
MS.gene35102.t1	MTR_2g031460	52.724	514	233	6	30	543	30	533	0.0	523
MS.gene35102.t1	MTR_2g031490	50.000	538	259	7	3	535	6	538	2.12e-175	506
MS.gene35102.t1	MTR_4g088355	51.473	509	235	5	31	534	31	532	4.11e-171	495
MS.gene35102.t1	MTR_6g017205	49.714	525	254	5	11	534	10	525	4.96e-171	495
MS.gene35102.t1	MTR_4g091200	49.434	530	255	5	6	534	8	525	3.75e-170	492
MS.gene35102.t1	MTR_4g091190	48.030	533	267	6	6	537	7	530	2.97e-169	490
MS.gene35102.t1	MTR_4g057990	49.720	535	254	7	1	534	1	521	1.46e-168	488
MS.gene35102.t1	MTR_4g091150	51.272	511	236	6	31	535	37	540	4.15e-168	488
MS.gene35102.t1	MTR_2g031510	50.198	506	244	5	33	535	40	540	4.64e-168	488
MS.gene35102.t1	MTR_4g094515	50.380	526	257	3	10	535	629	1150	1.78e-167	505
MS.gene35102.t1	MTR_4g094515	50.395	506	243	5	32	534	39	539	3.40e-162	491
MS.gene35102.t1	MTR_2g023590	48.932	468	232	3	68	534	4	465	2.31e-147	432
MS.gene35102.t1	MTR_4g091170	46.868	463	223	5	73	534	101	541	1.54e-145	431
MS.gene35102.t1	MTR_1g076830	40.649	524	294	8	32	545	31	547	2.41e-127	384
MS.gene35102.t1	MTR_3g009850	57.965	226	93	2	310	535	5	228	3.69e-87	269
MS.gene35102.t1	MTR_2g031600	58.130	246	101	1	1	246	1	244	1.45e-85	271
MS.gene35102.t1	MTR_2g031600	52.761	163	73	3	374	535	241	400	4.21e-50	177
MS.gene35102.t1	MTR_2g084370	46.847	111	37	2	128	238	1	89	7.02e-29	110
MS.gene35102.t1	MTR_2g084405	52.500	80	38	0	128	207	1	80	1.47e-18	81.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35102.t1	AT5G44440	50.847	531	245	7	8	533	8	527	0.0	520
MS.gene35102.t1	AT4G20820	49.162	537	255	5	2	533	1	524	5.59e-180	517
MS.gene35102.t1	AT5G44440	50.847	531	245	7	8	533	78	597	7.85e-180	520
MS.gene35102.t1	AT5G44400	48.704	540	263	9	3	536	6	537	1.84e-177	511
MS.gene35102.t1	AT2G34790	47.925	530	261	8	9	534	11	529	6.64e-176	507
MS.gene35102.t1	AT5G44390	47.698	543	266	11	3	535	6	540	6.95e-172	497
MS.gene35102.t1	AT5G44410	49.627	536	248	9	4	533	8	527	4.39e-171	495
MS.gene35102.t1	AT1G30760	48.924	511	248	6	28	534	48	549	6.79e-171	495
MS.gene35102.t1	AT1G30760	48.924	511	248	6	28	534	30	531	7.39e-171	494
MS.gene35102.t1	AT5G44360	49.358	545	253	11	1	536	1	531	9.71e-170	491
MS.gene35102.t1	AT5G44360	49.358	545	253	11	1	536	17	547	1.42e-169	491
MS.gene35102.t1	AT5G44380	48.799	541	262	8	3	535	6	539	1.41e-165	481
MS.gene35102.t1	AT5G44380	48.799	541	262	8	3	535	46	579	2.30e-165	482
MS.gene35102.t1	AT1G26420	46.704	531	270	9	8	535	5	525	8.01e-161	468
MS.gene35102.t1	AT1G30700	46.717	533	274	6	6	535	1	526	3.58e-160	467
MS.gene35102.t1	AT1G30730	47.170	530	267	6	6	533	5	523	4.60e-160	466
MS.gene35102.t1	AT1G26380	47.026	538	270	10	11	543	8	535	2.83e-159	465
MS.gene35102.t1	AT1G26410	48.148	513	254	8	26	535	46	549	6.48e-159	464
MS.gene35102.t1	AT1G11770	45.996	537	277	7	4	535	1	529	1.41e-158	463
MS.gene35102.t1	AT1G26400	46.490	527	270	7	8	532	5	521	5.84e-158	461
MS.gene35102.t1	AT4G20840	46.562	509	261	6	31	536	36	536	1.34e-157	461
MS.gene35102.t1	AT1G30710	45.047	535	272	9	9	535	8	528	2.43e-157	460
MS.gene35102.t1	AT4G20860	48.767	527	241	12	22	535	19	529	3.32e-157	459
MS.gene35102.t1	AT1G26390	47.741	509	249	5	27	535	36	527	4.40e-155	454
MS.gene35102.t1	AT1G34575	45.591	533	266	10	6	533	9	522	1.88e-152	447
MS.gene35102.t1	AT4G20800	45.117	512	273	5	23	533	19	523	2.10e-150	442
MS.gene35102.t1	AT4G20830	47.047	508	256	7	32	535	38	536	2.38e-149	439
MS.gene35102.t1	AT4G20830	47.047	508	256	7	32	535	38	536	4.95e-149	440
MS.gene35102.t1	AT1G30720	47.117	503	257	5	33	533	29	524	9.10e-147	432
MS.gene35102.t1	AT1G30740	45.269	539	274	10	10	539	6	532	1.67e-146	432
MS.gene35102.t1	AT1G30740	45.269	539	274	10	10	539	9	535	1.78e-146	432
MS.gene35102.t1	AT1G01980	44.424	538	282	9	6	535	6	534	2.43e-144	427
MS.gene35102.t1	AT2G34810	43.725	510	279	5	31	535	33	539	2.16e-137	409

Find 105 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAATCGGTTCTTTACCTTTA+TGG	0.132034	4.4:-19919542	MS.gene35102:CDS
AAAATTCCCATTCCTGAAAT+TGG	0.132285	4.4:-19919434	MS.gene35102:CDS
AAATTATGCTTGTTTGAATA+TGG	0.141661	4.4:+19920308	None:intergenic
GTTATAAGCAAGCTAGTATT+TGG	0.173497	4.4:-19919097	MS.gene35102:CDS
ATTCCTTCTAATCCAATTTC+AGG	0.177038	4.4:+19919422	None:intergenic
AATCGGTTCTTTACCTTTAT+GGG	0.198752	4.4:-19919541	MS.gene35102:CDS
CACCCGGAAAACCAAGATTT+TGG	0.227676	4.4:+19920083	None:intergenic
TAGAAAACTTTATAGTTATA+TGG	0.249330	4.4:-19919207	MS.gene35102:CDS
AATTATAGAGATCTTGATAT+TGG	0.259521	4.4:-19919146	MS.gene35102:CDS
AATGAACTGAGTAATAAATT+TGG	0.287296	4.4:+19919276	None:intergenic
GGTGGTGGAGGAGCAAGTTT+TGG	0.291186	4.4:-19919887	MS.gene35102:CDS
GTTTCAAGTGGTTCGTCTTT+CGG	0.292602	4.4:+19919515	None:intergenic
AAGGGTAAATTCAAGTATAA+AGG	0.303183	4.4:-19919702	MS.gene35102:CDS
GTGAGATCAAGGATGATAAA+TGG	0.304625	4.4:+19920205	None:intergenic
ATATTTCAAGCCTTGTTTCT+TGG	0.305951	4.4:-19919653	MS.gene35102:CDS
ATTCCTGAAATTGGATTAGA+AGG	0.307063	4.4:-19919425	MS.gene35102:CDS
ATTATAGAGATCTTGATATT+GGG	0.316617	4.4:-19919145	MS.gene35102:CDS
AAAGATCACCATAGCATCTT+TGG	0.321010	4.4:+19919373	None:intergenic
ATTCCATTTCCACATAGATA+TGG	0.327139	4.4:-19919308	MS.gene35102:CDS
GGAACCTTGGTTCGTAAATT+CGG	0.334327	4.4:-19920010	MS.gene35102:CDS
GTTCATTTCTGAAGAAGTTA+AGG	0.334950	4.4:+19919012	None:intergenic
TTAAAGACTGTCACAATTGA+TGG	0.347075	4.4:+19919827	None:intergenic
AATTATGCTTGTTTGAATAT+GGG	0.347218	4.4:+19920309	None:intergenic
AGGGTAAATTCAAGTATAAA+GGG	0.347661	4.4:-19919701	MS.gene35102:CDS
GGATTCGAATCTGCAGGTTA+TGG	0.348552	4.4:+19920275	None:intergenic
ATAGTAAAATATAAGTTTAG+AGG	0.351664	4.4:+19920571	None:intergenic
TTATAAGCAAGCTAGTATTT+GGG	0.359669	4.4:-19919096	MS.gene35102:CDS
TATTGATGAGTAAGAGGAAT+TGG	0.360998	4.4:+19920414	None:intergenic
CTCTGAAGTTTGTGAGATCA+AGG	0.366703	4.4:+19920194	None:intergenic
GTGATAATGACAAGAGGTTT+AGG	0.372360	4.4:+19920346	None:intergenic
CTTGGTGACTTTGAAACAAA+AGG	0.372572	4.4:+19919182	None:intergenic
CGTCTTTCGGAAACCCATAA+AGG	0.375701	4.4:+19919528	None:intergenic
AAATTTATTACTCAGTTCAT+TGG	0.379935	4.4:-19919274	MS.gene35102:CDS
TTTCCATATCTATGTGGAAA+TGG	0.380986	4.4:+19919305	None:intergenic
TTTGAGTATTGATGAGTAAG+AGG	0.381041	4.4:+19920408	None:intergenic
TGAATATGGGAAATCTGTTT+AGG	0.386909	4.4:+19920322	None:intergenic
CAAGAACAACTTCAAAAGAT+TGG	0.391940	4.4:-19919060	MS.gene35102:CDS
CACATCAGTGGCGGCGGCTA+TGG	0.400837	4.4:-19920031	MS.gene35102:CDS
AAATTGGATTAGAAGGAATA+TGG	0.403457	4.4:-19919418	MS.gene35102:CDS
CAAGAGAAGTTTCCTGAGCT+TGG	0.412203	4.4:-19919602	MS.gene35102:CDS
TTCATTTCTGAAGAAGTTAA+GGG	0.418127	4.4:+19919013	None:intergenic
TCTAATCCAATTTCAGGAAT+GGG	0.420910	4.4:+19919428	None:intergenic
TACCTTCTCTCATGTGTTCA+AGG	0.422099	4.4:-19918983	MS.gene35102:CDS
TTCTAATCCAATTTCAGGAA+TGG	0.423335	4.4:+19919427	None:intergenic
AAGATTGTGTTGAGATGAGT+TGG	0.428995	4.4:-19919568	MS.gene35102:CDS
GAAGTTTCCTGAGCTTGGTT+TGG	0.437875	4.4:-19919597	MS.gene35102:CDS
TTTCAAGCCTTGTTTCTTGG+AGG	0.440275	4.4:-19919650	MS.gene35102:CDS
CAAAGTCATGGCCACCGCTT+CGG	0.450183	4.4:+19920254	None:intergenic
AAGCGGTGGCCATGACTTTG+AGG	0.450822	4.4:-19920251	MS.gene35102:CDS
TGAGATCAAGGATGATAAAT+GGG	0.474438	4.4:+19920206	None:intergenic
GGTGGTGAATGTCCTACTAT+AGG	0.479825	4.4:-19920064	MS.gene35102:CDS
AGAACAGCTTGGGTTCAATC+TGG	0.484147	4.4:-19920148	MS.gene35102:CDS
TGGGCTATTAGAGGTGGTGG+AGG	0.490480	4.4:-19919899	MS.gene35102:CDS
AATTACTGTTATCTTACAAA+GGG	0.491690	4.4:-19919720	MS.gene35102:CDS
TGAGTAAGAGGAATTGGCTT+TGG	0.492341	4.4:+19920420	None:intergenic
TGTAGAAAGCAGAACAGCTT+GGG	0.494574	4.4:-19920158	MS.gene35102:CDS
CTATCCATTATGCCACCATA+AGG	0.494662	4.4:+19919347	None:intergenic
TGAGATGAGTTGGGTTGAAT+CGG	0.513533	4.4:-19919558	MS.gene35102:CDS
GTTCAATCTGGTGCAACAAT+TGG	0.515144	4.4:-19920136	MS.gene35102:CDS
ATTTCTTGACAGAGAAGCAA+TGG	0.520988	4.4:-19919936	MS.gene35102:CDS
TAATTGATATATGCAGCTCT+TGG	0.521563	4.4:+19919164	None:intergenic
AGATTGTGTTGAGATGAGTT+GGG	0.523370	4.4:-19919567	MS.gene35102:CDS
TCTCTAACCAAACCAAGCTC+AGG	0.524526	4.4:+19919590	None:intergenic
GACAAAGAAATCAGCAGCTA+AGG	0.525403	4.4:-19918960	None:intergenic
CTGTTGAGCAACGTTTCAAG+TGG	0.530743	4.4:+19919503	None:intergenic
CGCTTCGGATTCGAATCTGC+AGG	0.531779	4.4:+19920269	None:intergenic
AGCGGTGGCCATGACTTTGA+GGG	0.532159	4.4:-19920250	MS.gene35102:CDS
AAGAGGTTTAGGTGTTGTGT+TGG	0.535453	4.4:+19920357	None:intergenic
AAATGGGACTTCAGAAACAT+AGG	0.536814	4.4:+19920222	None:intergenic
TATAAATTTCCATATCTATG+TGG	0.540221	4.4:+19919299	None:intergenic
TGTCCACCAACACCTATAGT+AGG	0.545211	4.4:+19920052	None:intergenic
TTTCTTGACAGAGAAGCAAT+GGG	0.552335	4.4:-19919935	MS.gene35102:CDS
TGGCGGCGGCTATGGAACCT+TGG	0.554368	4.4:-19920023	MS.gene35102:CDS
GGTGGACACATCAGTGGCGG+CGG	0.558776	4.4:-19920037	MS.gene35102:CDS
TGGCCTATGTTTCATGATGA+TGG	0.560963	4.4:-19919398	MS.gene35102:CDS
GCACCATCATCATGAAACAT+AGG	0.563262	4.4:+19919395	None:intergenic
CAACAGAACACTAGCTGCAA+AGG	0.565270	4.4:-19919486	MS.gene35102:CDS
AAATTACTGTTATCTTACAA+AGG	0.566762	4.4:-19919721	MS.gene35102:CDS
TCCCTTGAACACATGAGAGA+AGG	0.572099	4.4:+19918981	None:intergenic
ATGTAGAAAGCAGAACAGCT+TGG	0.572213	4.4:-19920159	MS.gene35102:CDS
TTATAGAGATCTTGATATTG+GGG	0.576997	4.4:-19919144	MS.gene35102:CDS
TGCTCACATAATTGATGTGA+AGG	0.585552	4.4:-19919963	MS.gene35102:CDS
GCATCAAGAAAGTGATGAGG+TGG	0.587589	4.4:-19919252	MS.gene35102:CDS
CAACAAAGCTTATTCACAAG+TGG	0.589114	4.4:-19919778	MS.gene35102:CDS
TGTCCTACTATAGGTGTTGG+TGG	0.598722	4.4:-19920055	MS.gene35102:CDS
GAATGTCCTACTATAGGTGT+TGG	0.600015	4.4:-19920058	MS.gene35102:CDS
GTGGCCATGACTTTGAGGGT+CGG	0.601490	4.4:-19920246	MS.gene35102:CDS
ACCTTCTCTCATGTGTTCAA+GGG	0.603782	4.4:-19918982	MS.gene35102:CDS
ATTGGGGTGAATAATAACAA+TGG	0.606283	4.4:-19919128	MS.gene35102:CDS
TATAAGCAAGCTAGTATTTG+GGG	0.615112	4.4:-19919095	MS.gene35102:CDS
TGATGGTGCCAAAGATGCTA+TGG	0.619348	4.4:-19919381	MS.gene35102:CDS
CAGATTCGAATCCGAAGCGG+TGG	0.621977	4.4:-19920265	MS.gene35102:CDS
TCATTTCTGAAGAAGTTAAG+GGG	0.625972	4.4:+19919014	None:intergenic
ATCTACACCTCCAAGAAACA+AGG	0.636642	4.4:+19919643	None:intergenic
GGGTAAATTCAAGTATAAAG+GGG	0.641672	4.4:-19919700	MS.gene35102:CDS
AGGACCGACCCTCAAAGTCA+TGG	0.642967	4.4:+19920242	None:intergenic
GGTGTTGGTGGACACATCAG+TGG	0.646578	4.4:-19920043	MS.gene35102:CDS
GTTGGTGGACACATCAGTGG+CGG	0.651631	4.4:-19920040	MS.gene35102:CDS
AATAACTATAGAGACACTGA+AGG	0.658653	4.4:+19920479	None:intergenic
TTAGGTGTGATAATGACAAG+AGG	0.664428	4.4:+19920340	None:intergenic
AAGACCGAATTTACGAACCA+AGG	0.678437	4.4:+19920006	None:intergenic
ATAGTAGGACATTCACCACC+CGG	0.688594	4.4:+19920067	None:intergenic
GCTCACATAATTGATGTGAA+GGG	0.694549	4.4:-19919962	MS.gene35102:CDS
TTGGCATCAAGAAAGTGATG+AGG	0.701714	4.4:-19919255	MS.gene35102:CDS
CTGCAGATTCGAATCCGAAG+CGG	0.713192	4.4:-19920268	MS.gene35102:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAGTAAAATATAAGTTTAG+AGG	+	chr4.4:19918971-19918990	None:intergenic	15.0%
!!	TAGAAAACTTTATAGTTATA+TGG	-	chr4.4:19920332-19920351	MS.gene35102:CDS	15.0%
!!	AAATTACTGTTATCTTACAA+AGG	-	chr4.4:19919818-19919837	MS.gene35102:CDS	20.0%
!!	AAATTATGCTTGTTTGAATA+TGG	+	chr4.4:19919234-19919253	None:intergenic	20.0%
!!	AAATTTATTACTCAGTTCAT+TGG	-	chr4.4:19920265-19920284	MS.gene35102:CDS	20.0%
!!	AATGAACTGAGTAATAAATT+TGG	+	chr4.4:19920266-19920285	None:intergenic	20.0%
!!	AATTACTGTTATCTTACAAA+GGG	-	chr4.4:19919819-19919838	MS.gene35102:CDS	20.0%
!!	AATTATAGAGATCTTGATAT+TGG	-	chr4.4:19920393-19920412	MS.gene35102:CDS	20.0%
!!	AATTATGCTTGTTTGAATAT+GGG	+	chr4.4:19919233-19919252	None:intergenic	20.0%
!!	ATTATAGAGATCTTGATATT+GGG	-	chr4.4:19920394-19920413	MS.gene35102:CDS	20.0%
!!	TATAAATTTCCATATCTATG+TGG	+	chr4.4:19920243-19920262	None:intergenic	20.0%
!!	TGGAAAAAATGAAAATGAAT+TGG	-	chr4.4:19920307-19920326	MS.gene35102:CDS	20.0%
!	AAGGGTAAATTCAAGTATAA+AGG	-	chr4.4:19919837-19919856	MS.gene35102:CDS	25.0%
!	AGGGTAAATTCAAGTATAAA+GGG	-	chr4.4:19919838-19919857	MS.gene35102:CDS	25.0%
!	CTTTAATGTTCCAAAAACAT+TGG	-	chr4.4:19919729-19919748	MS.gene35102:CDS	25.0%
!	TTATAAGCAAGCTAGTATTT+GGG	-	chr4.4:19920443-19920462	MS.gene35102:CDS	25.0%
!	TTATAGAGATCTTGATATTG+GGG	-	chr4.4:19920395-19920414	MS.gene35102:CDS	25.0%
!!	AAATTGGATTAGAAGGAATA+TGG	-	chr4.4:19920121-19920140	MS.gene35102:CDS	25.0%
!!	TTCATTTCTGAAGAAGTTAA+GGG	+	chr4.4:19920529-19920548	None:intergenic	25.0%
!!!	AACCAAGATTTTGGTTTTTT+CGG	+	chr4.4:19919450-19919469	None:intergenic	25.0%
!!!	AATGGGTGAAGATTATTTTT+GGG	-	chr4.4:19919621-19919640	MS.gene35102:CDS	25.0%
	AAAATTCCCATTCCTGAAAT+TGG	-	chr4.4:19920105-19920124	MS.gene35102:CDS	30.0%
	AATAACTATAGAGACACTGA+AGG	+	chr4.4:19919063-19919082	None:intergenic	30.0%
	ATTCCATTTCCACATAGATA+TGG	-	chr4.4:19920231-19920250	MS.gene35102:CDS	30.0%
	ATTCCTTCTAATCCAATTTC+AGG	+	chr4.4:19920120-19920139	None:intergenic	30.0%
	ATTGGGGTGAATAATAACAA+TGG	-	chr4.4:19920411-19920430	MS.gene35102:CDS	30.0%
	CAAGAACAACTTCAAAAGAT+TGG	-	chr4.4:19920479-19920498	MS.gene35102:CDS	30.0%
	GGGTAAATTCAAGTATAAAG+GGG	-	chr4.4:19919839-19919858	MS.gene35102:CDS	30.0%
	GTTATAAGCAAGCTAGTATT+TGG	-	chr4.4:19920442-19920461	MS.gene35102:CDS	30.0%
	TAATTGATATATGCAGCTCT+TGG	+	chr4.4:19920378-19920397	None:intergenic	30.0%
	TACCGAAAAAACCAAAATCT+TGG	-	chr4.4:19919445-19919464	MS.gene35102:CDS	30.0%
	TATAAGCAAGCTAGTATTTG+GGG	-	chr4.4:19920444-19920463	MS.gene35102:CDS	30.0%
	TATTGATGAGTAAGAGGAAT+TGG	+	chr4.4:19919128-19919147	None:intergenic	30.0%
	TCTAATCCAATTTCAGGAAT+GGG	+	chr4.4:19920114-19920133	None:intergenic	30.0%
	TGAATATGGGAAATCTGTTT+AGG	+	chr4.4:19919220-19919239	None:intergenic	30.0%
	TGAGATCAAGGATGATAAAT+GGG	+	chr4.4:19919336-19919355	None:intergenic	30.0%
	TTAAAGACTGTCACAATTGA+TGG	+	chr4.4:19919715-19919734	None:intergenic	30.0%
	TTCTAATCCAATTTCAGGAA+TGG	+	chr4.4:19920115-19920134	None:intergenic	30.0%
	TTTCCATATCTATGTGGAAA+TGG	+	chr4.4:19920237-19920256	None:intergenic	30.0%
!	AATCGGTTCTTTACCTTTAT+GGG	-	chr4.4:19919998-19920017	MS.gene35102:CDS	30.0%
!	ATTCCTGAAATTGGATTAGA+AGG	-	chr4.4:19920114-19920133	MS.gene35102:CDS	30.0%
!	CAATGGGTGAAGATTATTTT+TGG	-	chr4.4:19919620-19919639	MS.gene35102:CDS	30.0%
!	GCATTTTGTTCCAATGTTTT+TGG	+	chr4.4:19919742-19919761	None:intergenic	30.0%
!	GTTCATTTCTGAAGAAGTTA+AGG	+	chr4.4:19920530-19920549	None:intergenic	30.0%
!	TCATTTCTGAAGAAGTTAAG+GGG	+	chr4.4:19920528-19920547	None:intergenic	30.0%
!!	AAACCAAAATCTTGGTTTTC+CGG	-	chr4.4:19919453-19919472	MS.gene35102:CDS	30.0%
!!	ATATTTCAAGCCTTGTTTCT+TGG	-	chr4.4:19919886-19919905	MS.gene35102:CDS	30.0%
!!	TTTGAGTATTGATGAGTAAG+AGG	+	chr4.4:19919134-19919153	None:intergenic	30.0%
!!!	ATGGTGATCTTTTTTCCTTA+TGG	-	chr4.4:19920177-19920196	MS.gene35102:CDS	30.0%
!!!	GATTATTTTTGGGCTATTAG+AGG	-	chr4.4:19919631-19919650	MS.gene35102:CDS	30.0%
!!!	GTTTTGGAGTCATAATTTCA+TGG	-	chr4.4:19919668-19919687	MS.gene35102:CDS	30.0%
	AAAGATCACCATAGCATCTT+TGG	+	chr4.4:19920169-19920188	None:intergenic	35.0%
	AAATGGGACTTCAGAAACAT+AGG	+	chr4.4:19919320-19919339	None:intergenic	35.0%
	AAGATTGTGTTGAGATGAGT+TGG	-	chr4.4:19919971-19919990	MS.gene35102:CDS	35.0%
	AGATTGTGTTGAGATGAGTT+GGG	-	chr4.4:19919972-19919991	MS.gene35102:CDS	35.0%
	ATTTCTTGACAGAGAAGCAA+TGG	-	chr4.4:19919603-19919622	MS.gene35102:CDS	35.0%
	CAACAAAGCTTATTCACAAG+TGG	-	chr4.4:19919761-19919780	MS.gene35102:CDS	35.0%
	GCTCACATAATTGATGTGAA+GGG	-	chr4.4:19919577-19919596	MS.gene35102:CDS	35.0%
	GTGAGATCAAGGATGATAAA+TGG	+	chr4.4:19919337-19919356	None:intergenic	35.0%
	TGCTCACATAATTGATGTGA+AGG	-	chr4.4:19919576-19919595	MS.gene35102:CDS	35.0%
	TTTCTTGACAGAGAAGCAAT+GGG	-	chr4.4:19919604-19919623	MS.gene35102:CDS	35.0%
!	GAATCGGTTCTTTACCTTTA+TGG	-	chr4.4:19919997-19920016	MS.gene35102:CDS	35.0%
!	GTGATAATGACAAGAGGTTT+AGG	+	chr4.4:19919196-19919215	None:intergenic	35.0%
!	TTAGGTGTGATAATGACAAG+AGG	+	chr4.4:19919202-19919221	None:intergenic	35.0%
!	TTTTCCTTATGGTGGCATAA+TGG	-	chr4.4:19920188-19920207	MS.gene35102:CDS	35.0%
!!	AACCAAAATCTTGGTTTTCC+GGG	-	chr4.4:19919454-19919473	MS.gene35102:CDS	35.0%
!!	CTTGGTGACTTTGAAACAAA+AGG	+	chr4.4:19920360-19920379	None:intergenic	35.0%
!!!	GTGATCTTTTTTCCTTATGG+TGG	-	chr4.4:19920180-19920199	MS.gene35102:CDS	35.0%
!!!	TATTTTTGGGCTATTAGAGG+TGG	-	chr4.4:19919634-19919653	MS.gene35102:CDS	35.0%
	AAGACCGAATTTACGAACCA+AGG	+	chr4.4:19919536-19919555	None:intergenic	40.0%
	ACCTTCTCTCATGTGTTCAA+GGG	-	chr4.4:19920557-19920576	MS.gene35102:CDS	40.0%
	ATCTACACCTCCAAGAAACA+AGG	+	chr4.4:19919899-19919918	None:intergenic	40.0%
	ATGTAGAAAGCAGAACAGCT+TGG	-	chr4.4:19919380-19919399	MS.gene35102:CDS	40.0%
	CTATCCATTATGCCACCATA+AGG	+	chr4.4:19920195-19920214	None:intergenic	40.0%
	GAATGTCCTACTATAGGTGT+TGG	-	chr4.4:19919481-19919500	MS.gene35102:CDS	40.0%
	GCACCATCATCATGAAACAT+AGG	+	chr4.4:19920147-19920166	None:intergenic	40.0%
	GTTCAATCTGGTGCAACAAT+TGG	-	chr4.4:19919403-19919422	MS.gene35102:CDS	40.0%
	TACCTTCTCTCATGTGTTCA+AGG	-	chr4.4:19920556-19920575	MS.gene35102:CDS	40.0%
	TGGCCTATGTTTCATGATGA+TGG	-	chr4.4:19920141-19920160	MS.gene35102:CDS	40.0%
	TGTAGAAAGCAGAACAGCTT+GGG	-	chr4.4:19919381-19919400	MS.gene35102:CDS	40.0%
	TTGGCATCAAGAAAGTGATG+AGG	-	chr4.4:19920284-19920303	MS.gene35102:CDS	40.0%
!	AAGAGGTTTAGGTGTTGTGT+TGG	+	chr4.4:19919185-19919204	None:intergenic	40.0%
!	GGAACCTTGGTTCGTAAATT+CGG	-	chr4.4:19919529-19919548	MS.gene35102:CDS	40.0%
!	GTTTCAAGTGGTTCGTCTTT+CGG	+	chr4.4:19920027-19920046	None:intergenic	40.0%
!	TGAGTAAGAGGAATTGGCTT+TGG	+	chr4.4:19919122-19919141	None:intergenic	40.0%
!!	CTCTGAAGTTTGTGAGATCA+AGG	+	chr4.4:19919348-19919367	None:intergenic	40.0%
!!	TGAGATGAGTTGGGTTGAAT+CGG	-	chr4.4:19919981-19920000	MS.gene35102:CDS	40.0%
!!	TTTCAAGCCTTGTTTCTTGG+AGG	-	chr4.4:19919889-19919908	MS.gene35102:CDS	40.0%
	AGAACAGCTTGGGTTCAATC+TGG	-	chr4.4:19919391-19919410	MS.gene35102:CDS	45.0%
	ATAGTAGGACATTCACCACC+CGG	+	chr4.4:19919475-19919494	None:intergenic	45.0%
	CAACAGAACACTAGCTGCAA+AGG	-	chr4.4:19920053-19920072	MS.gene35102:CDS	45.0%
	CAAGAGAAGTTTCCTGAGCT+TGG	-	chr4.4:19919937-19919956	MS.gene35102:CDS	45.0%
	CGTCTTTCGGAAACCCATAA+AGG	+	chr4.4:19920014-19920033	None:intergenic	45.0%
	CTGTTGAGCAACGTTTCAAG+TGG	+	chr4.4:19920039-19920058	None:intergenic	45.0%
	GAAGTTTCCTGAGCTTGGTT+TGG	-	chr4.4:19919942-19919961	MS.gene35102:CDS	45.0%
	GCATCAAGAAAGTGATGAGG+TGG	-	chr4.4:19920287-19920306	MS.gene35102:CDS	45.0%
	GGATTCGAATCTGCAGGTTA+TGG	+	chr4.4:19919267-19919286	None:intergenic	45.0%
	GGTGGTGAATGTCCTACTAT+AGG	-	chr4.4:19919475-19919494	MS.gene35102:CDS	45.0%
	TCCCTTGAACACATGAGAGA+AGG	+	chr4.4:19920561-19920580	None:intergenic	45.0%
	TCTCTAACCAAACCAAGCTC+AGG	+	chr4.4:19919952-19919971	None:intergenic	45.0%
	TGTCCACCAACACCTATAGT+AGG	+	chr4.4:19919490-19919509	None:intergenic	45.0%
!	CACCCGGAAAACCAAGATTT+TGG	+	chr4.4:19919459-19919478	None:intergenic	45.0%
!	TGATGGTGCCAAAGATGCTA+TGG	-	chr4.4:19920158-19920177	MS.gene35102:CDS	45.0%
!	TTTTGGGCTATTAGAGGTGG+TGG	-	chr4.4:19919637-19919656	MS.gene35102:CDS	45.0%
!!	CAAAATCTTGGTTTTCCGGG+TGG	-	chr4.4:19919457-19919476	MS.gene35102:CDS	45.0%
!!	TGTCCTACTATAGGTGTTGG+TGG	-	chr4.4:19919484-19919503	MS.gene35102:CDS	45.0%
	CTGCAGATTCGAATCCGAAG+CGG	-	chr4.4:19919271-19919290	MS.gene35102:CDS	50.0%
	AAGCGGTGGCCATGACTTTG+AGG	-	chr4.4:19919288-19919307	MS.gene35102:CDS	55.0%
	AGCGGTGGCCATGACTTTGA+GGG	-	chr4.4:19919289-19919308	MS.gene35102:CDS	55.0%
	AGGACCGACCCTCAAAGTCA+TGG	+	chr4.4:19919300-19919319	None:intergenic	55.0%
	CAAAGTCATGGCCACCGCTT+CGG	+	chr4.4:19919288-19919307	None:intergenic	55.0%
	CAGATTCGAATCCGAAGCGG+TGG	-	chr4.4:19919274-19919293	MS.gene35102:CDS	55.0%
	CGCTTCGGATTCGAATCTGC+AGG	+	chr4.4:19919273-19919292	None:intergenic	55.0%
!	GTGGCCATGACTTTGAGGGT+CGG	-	chr4.4:19919293-19919312	MS.gene35102:CDS	55.0%
!	GTTGGTGGACACATCAGTGG+CGG	-	chr4.4:19919499-19919518	MS.gene35102:CDS	55.0%
!	TGGGCTATTAGAGGTGGTGG+AGG	-	chr4.4:19919640-19919659	MS.gene35102:CDS	55.0%
!!	GGTGTTGGTGGACACATCAG+TGG	-	chr4.4:19919496-19919515	MS.gene35102:CDS	55.0%
!!!	GGTGGTGGAGGAGCAAGTTT+TGG	-	chr4.4:19919652-19919671	MS.gene35102:CDS	55.0%
	CACATCAGTGGCGGCGGCTA+TGG	-	chr4.4:19919508-19919527	MS.gene35102:CDS	65.0%
	GGTGGACACATCAGTGGCGG+CGG	-	chr4.4:19919502-19919521	MS.gene35102:CDS	65.0%
	TGGCGGCGGCTATGGAACCT+TGG	-	chr4.4:19919516-19919535	MS.gene35102:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	19918962	19920599	19918962	ID=MS.gene35102
chr4.4	mRNA	19918962	19920599	19918962	ID=MS.gene35102.t1;Parent=MS.gene35102
chr4.4	exon	19918962	19920599	19918962	ID=MS.gene35102.t1.exon1;Parent=MS.gene35102.t1
chr4.4	CDS	19918962	19920599	19918962	ID=cds.MS.gene35102.t1;Parent=MS.gene35102.t1

Gene Sequence

>MS.gene35102

ATGATGCCTCTAAACTTATATTTTACTATTCTACTAATTGCTCTCTTATTTTCATATACATCTTCTGCAATTGATACTCGTACACATGAAAAAAATTTCCTTCAGTGTCTCTATAGTTATTCACATAACTCAACTTCATTCTCTGAAGTTGTGTACACCAAAGCCAATTCCTCTTACTCATCAATACTCAAATTTACAACTCAAAATCTCAGATTTGCATCCAACACAACACCTAAACCTCTTGTCATTATCACACCTAAACAGATTTCCCATATTCAAACAAGCATAATTTGTTCACAAATCCATAACCTGCAGATTCGAATCCGAAGCGGTGGCCATGACTTTGAGGGTCGGTCCTATGTTTCTGAAGTCCCATTTATCATCCTTGATCTCACAAACTTCAGAGAAATTGAAGTAGATGTAGAAAGCAGAACAGCTTGGGTTCAATCTGGTGCAACAATTGGTGAACTTTACTACACAATTTACCGAAAAAACCAAAATCTTGGTTTTCCGGGTGGTGAATGTCCTACTATAGGTGTTGGTGGACACATCAGTGGCGGCGGCTATGGAACCTTGGTTCGTAAATTCGGTCTTGCAGCTGATAATATAATTGATGCTCACATAATTGATGTGAAGGGTAGATTTCTTGACAGAGAAGCAATGGGTGAAGATTATTTTTGGGCTATTAGAGGTGGTGGAGGAGCAAGTTTTGGAGTCATAATTTCATGGAAGATTAAACTTGTTCAAGTTCCATCAATTGTGACAGTCTTTAATGTTCCAAAAACATTGGAACAAAATGCAACAAAGCTTATTCACAAGTGGCAGTTTTTGACAAGTAGAATTGATGAAAACTTAGAAATTACTGTTATCTTACAAAGGGTAAATTCAAGTATAAAGGGGAAGTCAAAGTCAACAGTACAAGCTATATTTCAAGCCTTGTTTCTTGGAGGTGTAGATAAGCTCATACACTTGATGCAAGAGAAGTTTCCTGAGCTTGGTTTGGTTAGAGAAGATTGTGTTGAGATGAGTTGGGTTGAATCGGTTCTTTACCTTTATGGGTTTCCGAAAGACGAACCACTTGAAACGTTGCTCAACAGAACACTAGCTGCAAAGGATATTTACAAAGTAAAATCTGATTTTGTCAAAATTCCCATTCCTGAAATTGGATTAGAAGGAATATGGCCTATGTTTCATGATGATGGTGCCAAAGATGCTATGGTGATCTTTTTTCCTTATGGTGGCATAATGGATAGAATTTTTGAGTCTGAAATTCCATTTCCACATAGATATGGAAATTTATACCAAATTTATTACTCAGTTCATTGGCATCAAGAAAGTGATGAGGTGGAAAAAATGAAAATGAATTGGATTAGAAAACTTTATAGTTATATGGAACCTTTTGTTTCAAAGTCACCAAGAGCTGCATATATCAATTATAGAGATCTTGATATTGGGGTGAATAATAACAATGGTTACACAAGTTATAAGCAAGCTAGTATTTGGGGTGTTAAGTACTTCAAGAACAACTTCAAAAGATTGGTAAAAGTGAAGACTAAAGTTGATCCCCTTAACTTCTTCAGAAATGAACAGAGTATACCTTCTCTCATGTGTTCAAGGGACAAAGAAATCAGCAGCTAA

Protein sequence

>MS.gene35102.t1

MMPLNLYFTILLIALLFSYTSSAIDTRTHEKNFLQCLYSYSHNSTSFSEVVYTKANSSYSSILKFTTQNLRFASNTTPKPLVIITPKQISHIQTSIICSQIHNLQIRIRSGGHDFEGRSYVSEVPFIILDLTNFREIEVDVESRTAWVQSGATIGELYYTIYRKNQNLGFPGGECPTIGVGGHISGGGYGTLVRKFGLAADNIIDAHIIDVKGRFLDREAMGEDYFWAIRGGGGASFGVIISWKIKLVQVPSIVTVFNVPKTLEQNATKLIHKWQFLTSRIDENLEITVILQRVNSSIKGKSKSTVQAIFQALFLGGVDKLIHLMQEKFPELGLVREDCVEMSWVESVLYLYGFPKDEPLETLLNRTLAAKDIYKVKSDFVKIPIPEIGLEGIWPMFHDDGAKDAMVIFFPYGGIMDRIFESEIPFPHRYGNLYQIYYSVHWHQESDEVEKMKMNWIRKLYSYMEPFVSKSPRAAYINYRDLDIGVNNNNGYTSYKQASIWGVKYFKNNFKRLVKVKTKVDPLNFFRNEQSIPSLMCSRDKEISS