AlfalfaGEDB | MS.gene028352

M. sativa cultivar XinJiangDaYe / MS.gene028352

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363
PFAM: PF01565.26 PF08031.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028352.t1	XP_013457292.1	95.1	546	25	1	1	544	1	546	1.70E-300	1041.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028352.t1	A6P6W1	49.8	548	266	5	2	543	1	545	7.1e-154	545.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028352.t1	A0A072UQJ9	95.1	546	25	1	1	544	1	546	1.2e-300	1041.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene009481	MS.gene028352	PPI
MS.gene028352	MS.gene28717	PPI
MS.gene028352	MS.gene35106	PPI
MS.gene02146	MS.gene028352	PPI
MS.gene028352	MS.gene36439	PPI
MS.gene028352	MS.gene28727	PPI
MS.gene028352	MS.gene51646	PPI
MS.gene028352	MS.gene009479	PPI
MS.gene35114	MS.gene028352	PPI
MS.gene028352	MS.gene36435	PPI
MS.gene028352	MS.gene028354	PPI
MS.gene35113	MS.gene028352	PPI
MS.gene36421	MS.gene028352	PPI
MS.gene028352	MS.gene35103	PPI
MS.gene028352	MS.gene36437	PPI
MS.gene028352	MS.gene028357	PPI
MS.gene28726	MS.gene028352	PPI
MS.gene028352	MS.gene56278	PPI
MS.gene028352	MS.gene028346	PPI
MS.gene028352	MS.gene63535	PPI
MS.gene28723	MS.gene028352	PPI
MS.gene63532	MS.gene028352	PPI
MS.gene028352	MS.gene28725	PPI
MS.gene36445	MS.gene028352	PPI
MS.gene028352	MS.gene28723	PPI
MS.gene028352	MS.gene35083	PPI
MS.gene028352	MS.gene047977	PPI
MS.gene028369	MS.gene028352	PPI
MS.gene028352	MS.gene35102	PPI
MS.gene028352	MS.gene28742	PPI
MS.gene028347	MS.gene028352	PPI
MS.gene028352	MS.gene028353	PPI
MS.gene028352	MS.gene56282	PPI
MS.gene028352	MS.gene51643	PPI
MS.gene35104	MS.gene028352	PPI
MS.gene028352	MS.gene36444	PPI
MS.gene35105	MS.gene028352	PPI
MS.gene63533	MS.gene028352	PPI
MS.gene36438	MS.gene028352	PPI
MS.gene003357	MS.gene028352	PPI
MS.gene28724	MS.gene028352	PPI
MS.gene51644	MS.gene028352	PPI
MS.gene028352	MS.gene56279	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028352.t1	MTR_4g094495	95.055	546	25	1	1	544	1	546	0.0	1036
MS.gene028352.t1	MTR_4g094488	82.169	544	96	1	1	544	1	543	0.0	907
MS.gene028352.t1	MTR_4g094492	80.073	547	101	4	1	544	1	542	0.0	872
MS.gene028352.t1	MTR_4g094478	79.330	537	108	2	1	537	1	534	0.0	869
MS.gene028352.t1	MTR_4g094480	79.044	544	111	2	1	544	1	541	0.0	865
MS.gene028352.t1	MTR_4g094418	71.625	437	117	2	105	537	1	434	0.0	664
MS.gene028352.t1	MTR_2g031560	53.585	530	234	5	8	536	3	521	0.0	583
MS.gene028352.t1	MTR_3g009880	55.513	526	222	6	12	536	4	518	0.0	567
MS.gene028352.t1	MTR_2g031390	52.150	535	240	7	5	536	6	527	0.0	566
MS.gene028352.t1	MTR_3g009760	53.846	533	230	6	6	536	2	520	0.0	562
MS.gene028352.t1	MTR_2g031590	52.820	532	246	4	8	537	3	531	0.0	561
MS.gene028352.t1	MTR_3g009820	53.471	533	232	6	6	536	2	520	0.0	560
MS.gene028352.t1	MTR_2g031460	57.822	505	203	5	31	535	30	524	0.0	559
MS.gene028352.t1	MTR_2g031420	55.535	533	224	7	6	536	4	525	0.0	558
MS.gene028352.t1	MTR_4g094498	55.777	502	213	3	36	537	41	533	0.0	547
MS.gene028352.t1	MTR_4g094520	51.326	528	247	6	12	537	12	531	0.0	529
MS.gene028352.t1	MTR_4g094518	54.134	508	222	6	32	536	29	528	0.0	527
MS.gene028352.t1	MTR_4g091150	51.763	539	243	6	8	536	7	538	6.30e-179	515
MS.gene028352.t1	MTR_4g057990	50.556	540	246	8	2	538	1	522	7.86e-176	506
MS.gene028352.t1	MTR_2g031490	50.281	533	255	5	7	536	11	536	1.12e-175	507
MS.gene028352.t1	MTR_6g017205	50.755	530	247	6	12	539	10	527	1.70e-175	506
MS.gene028352.t1	MTR_4g091200	50.093	535	247	7	7	538	9	526	3.05e-175	505
MS.gene028352.t1	MTR_4g094515	51.316	532	252	4	7	537	624	1149	8.57e-175	524
MS.gene028352.t1	MTR_4g094515	51.866	509	235	5	33	538	39	540	2.52e-168	508
MS.gene028352.t1	MTR_4g088355	51.064	517	237	7	33	543	32	538	2.42e-173	501
MS.gene028352.t1	MTR_4g091190	48.593	533	264	4	12	543	10	533	4.15e-173	500
MS.gene028352.t1	MTR_2g031510	51.779	506	234	5	34	536	40	538	4.89e-172	498
MS.gene028352.t1	MTR_4g091170	48.712	466	214	5	74	538	101	542	1.03e-155	457
MS.gene028352.t1	MTR_2g023590	49.787	470	227	3	69	537	4	465	7.46e-154	449
MS.gene028352.t1	MTR_1g076830	45.643	482	251	5	58	535	58	532	2.33e-133	399
MS.gene028352.t1	MTR_2g031600	59.917	242	96	1	7	247	3	244	2.79e-90	283
MS.gene028352.t1	MTR_2g031600	53.797	158	70	2	380	537	245	399	9.69e-53	184
MS.gene028352.t1	MTR_3g009850	60.889	225	84	3	313	536	5	226	2.09e-87	270
MS.gene028352.t1	MTR_2g084370	50.450	111	33	2	129	239	1	89	1.83e-32	120
MS.gene028352.t1	MTR_2g084405	58.750	80	33	0	129	208	1	80	1.28e-22	93.2
MS.gene028352.t1	MTR_8g062280	34.951	103	37	3	437	539	4	76	2.82e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028352.t1	AT5G44440	51.017	541	245	8	2	536	1	527	0.0	528
MS.gene028352.t1	AT5G44440	50.647	541	247	7	2	536	71	597	0.0	527
MS.gene028352.t1	AT5G44400	50.657	533	246	9	11	536	12	534	0.0	523
MS.gene028352.t1	AT4G20820	48.897	544	257	7	2	540	1	528	3.23e-178	513
MS.gene028352.t1	AT5G44390	47.794	544	265	10	3	537	6	539	3.31e-175	506
MS.gene028352.t1	AT2G34790	47.575	536	258	9	8	539	15	531	7.97e-173	499
MS.gene028352.t1	AT5G44360	52.148	512	224	11	32	536	31	528	1.06e-171	496
MS.gene028352.t1	AT5G44360	52.344	512	223	11	32	536	47	544	1.06e-171	497
MS.gene028352.t1	AT1G30760	49.611	514	240	8	32	539	33	533	2.46e-171	495
MS.gene028352.t1	AT1G30760	49.611	514	240	8	32	539	51	551	2.78e-171	496
MS.gene028352.t1	AT5G44410	49.907	539	243	10	5	536	9	527	3.76e-171	495
MS.gene028352.t1	AT1G26420	47.940	534	258	11	8	536	5	523	2.04e-166	483
MS.gene028352.t1	AT1G30730	47.826	529	265	6	10	536	4	523	2.37e-166	483
MS.gene028352.t1	AT5G44380	49.348	537	255	9	8	536	10	537	3.01e-166	483
MS.gene028352.t1	AT5G44380	49.348	537	255	9	8	536	50	577	6.43e-166	483
MS.gene028352.t1	AT1G34575	47.778	540	262	8	4	539	2	525	1.03e-165	481
MS.gene028352.t1	AT4G20860	50.380	526	233	12	22	536	19	527	5.27e-165	479
MS.gene028352.t1	AT1G30710	47.948	536	252	9	8	536	11	526	6.27e-165	479
MS.gene028352.t1	AT1G30700	49.153	531	257	7	9	536	4	524	1.38e-164	478
MS.gene028352.t1	AT1G26410	49.603	504	244	8	34	536	53	547	1.60e-162	474
MS.gene028352.t1	AT1G26380	48.502	534	249	10	11	536	8	523	2.98e-162	472
MS.gene028352.t1	AT1G26390	49.307	505	248	5	33	536	28	525	7.49e-160	466
MS.gene028352.t1	AT1G26400	46.691	544	262	11	6	540	3	527	1.17e-159	465
MS.gene028352.t1	AT4G20840	47.379	515	254	8	33	542	37	539	6.44e-157	459
MS.gene028352.t1	AT1G30720	49.307	505	245	6	34	536	29	524	1.07e-156	458
MS.gene028352.t1	AT1G11770	46.455	536	268	8	11	537	3	528	2.94e-156	457
MS.gene028352.t1	AT4G20800	48.119	505	252	5	33	536	28	523	1.56e-155	455
MS.gene028352.t1	AT1G01980	47.368	513	252	8	33	537	31	533	2.24e-148	437
MS.gene028352.t1	AT4G20830	46.955	509	257	7	32	537	37	535	5.23e-148	436
MS.gene028352.t1	AT4G20830	46.955	509	257	7	32	537	37	535	2.17e-147	436
MS.gene028352.t1	AT1G30740	46.455	536	265	11	10	537	6	527	5.73e-144	426
MS.gene028352.t1	AT1G30740	46.455	536	265	11	10	537	9	530	6.31e-144	426
MS.gene028352.t1	AT2G34810	45.472	508	269	4	33	536	34	537	7.02e-144	426

Find 101 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGATTATGGTTGCTTGAATA+TGG	0.170155	4.2:+18005667	None:intergenic
GCTATAAGCAAGCTAGTATT+TGG	0.193317	4.2:-18004450	MS.gene028352:CDS
ATGCCTTCTAATCCAGTTTC+AGG	0.203252	4.2:+18004775	None:intergenic
AACTATAGAGATCTTGATAT+TGG	0.231989	4.2:-18004499	MS.gene028352:CDS
CCATATCATCATTGCATCTT+TGG	0.239092	4.2:+18004726	None:intergenic
TTATTTCAAGCTTTGTTTCT+TGG	0.263131	4.2:-18005006	MS.gene028352:CDS
GGTGGTGGAGGAGCAAGTTT+TGG	0.286201	4.2:-18005246	MS.gene028352:CDS
TCTAATCCAGTTTCAGGAAT+TGG	0.286688	4.2:+18004781	None:intergenic
ACTTCAGTTGGAGAACCTTT+TGG	0.298361	4.2:+18004868	None:intergenic
AGAATTCCAATTCCTGAAAC+TGG	0.301096	4.2:-18004787	MS.gene028352:CDS
CAATGGGTGAGGATTTGTTT+TGG	0.303294	4.2:-18005278	MS.gene028352:CDS
ACTATAGAGATCTTGATATT+GGG	0.314135	4.2:-18004498	MS.gene028352:CDS
GTGACAATTACAAGAGGTTT+TGG	0.315638	4.2:+18005705	None:intergenic
CACTTCAGTGGTGGTGGATA+TGG	0.317127	4.2:-18005390	MS.gene028352:CDS
GAACCATCTTCATCAAATAA+AGG	0.318041	4.2:+18004748	None:intergenic
CCAAAGATGCAATGATGATA+TGG	0.328286	4.2:-18004726	MS.gene028352:CDS
TAGAAAACTGTATAGTTATA+TGG	0.329156	4.2:-18004560	MS.gene028352:CDS
TCATTTCTGAAGAAGTTTAG+AGG	0.331220	4.2:+18004367	None:intergenic
ACAGTAGGACAAACACTTGC+AGG	0.361034	4.2:+18005426	None:intergenic
TTGAGTTATGTGAATAACTA+TGG	0.361143	4.2:+18005826	None:intergenic
GGAACCTTGTTGCGTAAATA+TGG	0.364610	4.2:-18005369	MS.gene028352:CDS
TATTGATGTGTAAGAGGAAT+TGG	0.365680	4.2:+18005773	None:intergenic
CTATAAGCAAGCTAGTATTT+GGG	0.368691	4.2:-18004449	MS.gene028352:CDS
AATCTGTAGGCCATGGTATT+GGG	0.371585	4.2:+18005641	None:intergenic
CTTGGTGACTTTGAAACAAA+AGG	0.372572	4.2:+18004535	None:intergenic
TGATTCAATACTCGGTTCAT+TGG	0.373369	4.2:-18004627	MS.gene028352:CDS
GTTTCCATATGGTGGCAAAA+TGG	0.373437	4.2:-18004704	MS.gene028352:CDS
ATTCCTGAAACTGGATTAGA+AGG	0.376708	4.2:-18004778	MS.gene028352:CDS
GAATCTGTAGGCCATGGTAT+TGG	0.381926	4.2:+18005640	None:intergenic
CAAGAACAACTTCAAAAGAT+TGG	0.382060	4.2:-18004413	MS.gene028352:CDS
TTTCCACTTCTATGTGGAAA+TGG	0.387520	4.2:+18004658	None:intergenic
ATGGTATTGGGAACAGATTA+TGG	0.392865	4.2:+18005653	None:intergenic
GTAAACACAGTAACAATTGA+TGG	0.397213	4.2:+18005186	None:intergenic
TCATTTACCTCTTCAGCAAT+TGG	0.403207	4.2:-18005888	MS.gene028352:CDS
AAGCGGCGGCCACGACTTTG+AGG	0.408872	4.2:-18005610	MS.gene028352:CDS
CTGTTAAGCAACACTTCAGT+TGG	0.416351	4.2:+18004856	None:intergenic
CAAGAGAAGTTTCCTGAGCT+TGG	0.427109	4.2:-18004955	MS.gene028352:CDS
ATGAGATCAATGACGACAAA+TGG	0.430921	4.2:+18005564	None:intergenic
TGGGCTATTAGGGGTGGTGG+AGG	0.435638	4.2:-18005258	MS.gene028352:CDS
GATTATGGTTGCTTGAATAT+GGG	0.436969	4.2:+18005668	None:intergenic
GAAGTTTCCTGAGCTTGGTT+TGG	0.437875	4.2:-18004950	MS.gene028352:CDS
CTTATTCATGATTCAATACT+CGG	0.438411	4.2:-18004635	MS.gene028352:CDS
AATATTGTATTGAAATGAGT+TGG	0.439258	4.2:-18004921	MS.gene028352:CDS
TTTCAAGCTTTGTTTCTTGG+AGG	0.440275	4.2:-18005003	MS.gene028352:CDS
TGGCCTTTATTTGATGAAGA+TGG	0.441205	4.2:-18004751	MS.gene028352:CDS
TATACCTTCTCATGTGTTCA+AGG	0.466922	4.2:-18004338	MS.gene028352:CDS
GCTTGAAATAAAACTAGTAC+TGG	0.469012	4.2:+18005018	None:intergenic
TTGGAGTATTGATGTGTAAG+AGG	0.474833	4.2:+18005767	None:intergenic
GTGAGCATCAATGATGTTAT+CGG	0.478746	4.2:+18005338	None:intergenic
AAAACTGCATGGGTTCAATC+TGG	0.487082	4.2:-18005507	MS.gene028352:CDS
TGTGTAAGAGGAATTGGCTT+TGG	0.503548	4.2:+18005779	None:intergenic
AGTAGTACCAATTGCTGAAG+AGG	0.507421	4.2:+18005881	None:intergenic
AAACTGGATTAGAAGGCATA+TGG	0.508202	4.2:-18004771	MS.gene028352:CDS
GATGAATATTGTCTGGCAAA+GGG	0.514394	4.2:-18005079	MS.gene028352:CDS
ATATAGAGATGAATATTGTC+TGG	0.517958	4.2:-18005086	MS.gene028352:CDS
ATTCCATTTCCACATAGAAG+TGG	0.522494	4.2:-18004661	MS.gene028352:CDS
AATAACTATGGAGACATTGA+AGG	0.523986	4.2:+18005838	None:intergenic
TCTCTAACCAAACCAAGCTC+AGG	0.524526	4.2:+18004943	None:intergenic
ATAGACAAATATGAGCTTCG+AGG	0.525149	4.2:+18005933	None:intergenic
AGCGGCGGCCACGACTTTGA+GGG	0.526742	4.2:-18005609	MS.gene028352:CDS
TGTCCTACTGTAGGTGTTGG+TGG	0.531106	4.2:-18005414	MS.gene028352:CDS
GTTTCTTGACAGAGAAGCAA+TGG	0.534469	4.2:-18005295	MS.gene028352:CDS
AGATGAATATTGTCTGGCAA+AGG	0.537229	4.2:-18005080	MS.gene028352:CDS
AATAAGTTTCCACTTCTATG+TGG	0.541507	4.2:+18004652	None:intergenic
CTATAGAGATCTTGATATTG+GGG	0.546784	4.2:-18004497	MS.gene028352:CDS
TAGTTAATATATGCAGCTCT+TGG	0.560303	4.2:+18004517	None:intergenic
GCAAGTGTTTGTCCTACTGT+AGG	0.562475	4.2:-18005423	MS.gene028352:CDS
TTTCTTGACAGAGAAGCAAT+GGG	0.565816	4.2:-18005294	MS.gene028352:CDS
AGGAAACTTCTCTTGAACCA+AGG	0.566167	4.2:+18004963	None:intergenic
GGTGGACACTTCAGTGGTGG+TGG	0.566542	4.2:-18005396	MS.gene028352:CDS
TGTAGATAAACTCATACCCT+TGG	0.566543	4.2:-18004980	MS.gene028352:CDS
GTTTGTCCTACTGTAGGTGT+TGG	0.572069	4.2:-18005417	MS.gene028352:CDS
ATTGGGGTGAATAATAACAA+TGG	0.572947	4.2:-18004481	MS.gene028352:CDS
CAACAAAGCTTGTTAACAAG+TGG	0.574272	4.2:-18005137	MS.gene028352:CDS
TGCTCACATAATTGATGTGA+AGG	0.585552	4.2:-18005322	MS.gene028352:CDS
GGAAACTTCTCTTGAACCAA+GGG	0.586930	4.2:+18004964	None:intergenic
TGACAGAGAAGCAATGGGTG+AGG	0.588886	4.2:-18005289	MS.gene028352:CDS
ACATAATTGATGTGAAGGGT+AGG	0.589985	4.2:-18005317	MS.gene028352:CDS
TGAATATGGGATATTTCTAG+AGG	0.601628	4.2:+18005681	None:intergenic
TGTCCCTTGAACACATGAGA+AGG	0.607142	4.2:+18004334	None:intergenic
AAGACCATATTTACGCAACA+AGG	0.610440	4.2:+18005365	None:intergenic
GTTCAATCTGGTGCAACACT+TGG	0.613052	4.2:-18005495	MS.gene028352:CDS
TCGGTTCATTGGCATCAAGA+AGG	0.613335	4.2:-18004616	MS.gene028352:CDS
CAGTAGGACAAACACTTGCA+GGG	0.613601	4.2:+18005427	None:intergenic
GCATCAAGAAGGTGATGAGG+TGG	0.615161	4.2:-18004605	MS.gene028352:CDS
ATGATGATATGGTTTCCATA+TGG	0.616039	4.2:-18004715	MS.gene028352:CDS
GAATTCGAATCTGTAGGCCA+TGG	0.621127	4.2:+18005634	None:intergenic
ATACCTTCTCATGTGTTCAA+GGG	0.623373	4.2:-18004337	MS.gene028352:CDS
TATAAGCAAGCTAGTATTTG+GGG	0.624423	4.2:-18004448	MS.gene028352:CDS
GTTGGTGGACACTTCAGTGG+TGG	0.625730	4.2:-18005399	MS.gene028352:CDS
GGTGTTGGTGGACACTTCAG+TGG	0.638405	4.2:-18005402	MS.gene028352:CDS
AGAGGTGTGACAATTACAAG+AGG	0.647102	4.2:+18005699	None:intergenic
ATGATATGGTTTCCATATGG+TGG	0.655336	4.2:-18004712	MS.gene028352:CDS
TTGGCATCAAGAAGGTGATG+AGG	0.656241	4.2:-18004608	MS.gene028352:CDS
CAGATTCGAATTCGAAGCGG+CGG	0.660883	4.2:-18005624	MS.gene028352:CDS
TGTCCACCAACACCTACAGT+AGG	0.663218	4.2:+18005411	None:intergenic
ATAATCTGTTCCCAATACCA+TGG	0.671513	4.2:-18005651	MS.gene028352:CDS
AAGACAGACCCTCAAAGTCG+TGG	0.674602	4.2:+18005601	None:intergenic
CGCTTCGAATTCGAATCTGT+AGG	0.689715	4.2:+18005628	None:intergenic
GCTCACATAATTGATGTGAA+GGG	0.694549	4.2:-18005321	MS.gene028352:CDS
CTACAGATTCGAATTCGAAG+CGG	0.715605	4.2:-18005627	MS.gene028352:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTTAAATTCAAGTAAAAA+AGG	-	chr4.2:18005212-18005231	MS.gene028352:CDS	10.0%
!!	AATATTGTATTGAAATGAGT+TGG	-	chr4.2:18005345-18005364	MS.gene028352:CDS	20.0%
!!	TAGAAAACTGTATAGTTATA+TGG	-	chr4.2:18005706-18005725	MS.gene028352:CDS	20.0%
!	AACTATAGAGATCTTGATAT+TGG	-	chr4.2:18005767-18005786	MS.gene028352:CDS	25.0%
!	ACTATAGAGATCTTGATATT+GGG	-	chr4.2:18005768-18005787	MS.gene028352:CDS	25.0%
!	ATATAGAGATGAATATTGTC+TGG	-	chr4.2:18005180-18005199	MS.gene028352:CDS	25.0%
!	CTTATTCATGATTCAATACT+CGG	-	chr4.2:18005631-18005650	MS.gene028352:CDS	25.0%
!	TGGAAAAATTGCACATAAAT+TGG	-	chr4.2:18005681-18005700	MS.gene028352:CDS	25.0%
!	TTGAGTTATGTGAATAACTA+TGG	+	chr4.2:18004443-18004462	None:intergenic	25.0%
!!!	TACTTTTTTCAGTTTCCAAA+AGG	-	chr4.2:18005383-18005402	MS.gene028352:CDS	25.0%
!!!	TTATTTCAAGCTTTGTTTCT+TGG	-	chr4.2:18005260-18005279	MS.gene028352:CDS	25.0%
	AATAACTATGGAGACATTGA+AGG	+	chr4.2:18004431-18004450	None:intergenic	30.0%
	AATAAGTTTCCACTTCTATG+TGG	+	chr4.2:18005617-18005636	None:intergenic	30.0%
	AGATTATGGTTGCTTGAATA+TGG	+	chr4.2:18004602-18004621	None:intergenic	30.0%
	ATGATGATATGGTTTCCATA+TGG	-	chr4.2:18005551-18005570	MS.gene028352:CDS	30.0%
	ATGTACACAAAAAAACTGCA+TGG	-	chr4.2:18004748-18004767	MS.gene028352:CDS	30.0%
	ATTGGGGTGAATAATAACAA+TGG	-	chr4.2:18005785-18005804	MS.gene028352:CDS	30.0%
	CAAGAACAACTTCAAAAGAT+TGG	-	chr4.2:18005853-18005872	MS.gene028352:CDS	30.0%
	CTATAAGCAAGCTAGTATTT+GGG	-	chr4.2:18005817-18005836	MS.gene028352:CDS	30.0%
	CTATAGAGATCTTGATATTG+GGG	-	chr4.2:18005769-18005788	MS.gene028352:CDS	30.0%
	GAACCATCTTCATCAAATAA+AGG	+	chr4.2:18005521-18005540	None:intergenic	30.0%
	GATTATGGTTGCTTGAATAT+GGG	+	chr4.2:18004601-18004620	None:intergenic	30.0%
	GCTTGAAATAAAACTAGTAC+TGG	+	chr4.2:18005251-18005270	None:intergenic	30.0%
	GTAAACACAGTAACAATTGA+TGG	+	chr4.2:18005083-18005102	None:intergenic	30.0%
	GTTTACTGTTCCAAAAACAT+TGG	-	chr4.2:18005097-18005116	MS.gene028352:CDS	30.0%
	TAGTTAATATATGCAGCTCT+TGG	+	chr4.2:18005752-18005771	None:intergenic	30.0%
	TATAAGCAAGCTAGTATTTG+GGG	-	chr4.2:18005818-18005837	MS.gene028352:CDS	30.0%
	TATTGATGTGTAAGAGGAAT+TGG	+	chr4.2:18004496-18004515	None:intergenic	30.0%
	TGTACACAAAAAAACTGCAT+GGG	-	chr4.2:18004749-18004768	MS.gene028352:CDS	30.0%
!	GCATTTTGTTCCAATGTTTT+TGG	+	chr4.2:18005110-18005129	None:intergenic	30.0%
!	TCATTTCTGAAGAAGTTTAG+AGG	+	chr4.2:18005902-18005921	None:intergenic	30.0%
!	TGTTAACAAGTGGCAATTTT+TGG	-	chr4.2:18005139-18005158	MS.gene028352:CDS	30.0%
!!	TGAATATGGGATATTTCTAG+AGG	+	chr4.2:18004588-18004607	None:intergenic	30.0%
!!!	AACCTAGAGTTTTGCTTTTT+TGG	+	chr4.2:18004818-18004837	None:intergenic	30.0%
!!!	TGAGATTTTGAGTTGAGAAT+TGG	+	chr4.2:18004521-18004540	None:intergenic	30.0%
	AAGACCATATTTACGCAACA+AGG	+	chr4.2:18004904-18004923	None:intergenic	35.0%
	ACATAATTGATGTGAAGGGT+AGG	-	chr4.2:18004949-18004968	MS.gene028352:CDS	35.0%
	AGAATTCCAATTCCTGAAAC+TGG	-	chr4.2:18005479-18005498	MS.gene028352:CDS	35.0%
	AGATGAATATTGTCTGGCAA+AGG	-	chr4.2:18005186-18005205	MS.gene028352:CDS	35.0%
	AGCCAAAAAAGCAAAACTCT+AGG	-	chr4.2:18004813-18004832	MS.gene028352:CDS	35.0%
	ATAATCTGTTCCCAATACCA+TGG	-	chr4.2:18004615-18004634	MS.gene028352:CDS	35.0%
	ATACCTTCTCATGTGTTCAA+GGG	-	chr4.2:18005929-18005948	MS.gene028352:CDS	35.0%
	ATAGACAAATATGAGCTTCG+AGG	+	chr4.2:18004336-18004355	None:intergenic	35.0%
	ATGAGATCAATGACGACAAA+TGG	+	chr4.2:18004705-18004724	None:intergenic	35.0%
	ATGATATGGTTTCCATATGG+TGG	-	chr4.2:18005554-18005573	MS.gene028352:CDS	35.0%
	ATTCCATTTCCACATAGAAG+TGG	-	chr4.2:18005605-18005624	MS.gene028352:CDS	35.0%
	CCAAAGATGCAATGATGATA+TGG	-	chr4.2:18005540-18005559	MS.gene028352:CDS	35.0%
	CCATATCATCATTGCATCTT+TGG	+	chr4.2:18005543-18005562	None:intergenic	35.0%
	GATGAATATTGTCTGGCAAA+GGG	-	chr4.2:18005187-18005206	MS.gene028352:CDS	35.0%
	GCTATAAGCAAGCTAGTATT+TGG	-	chr4.2:18005816-18005835	MS.gene028352:CDS	35.0%
	GCTCACATAATTGATGTGAA+GGG	-	chr4.2:18004945-18004964	MS.gene028352:CDS	35.0%
	GTGAGCATCAATGATGTTAT+CGG	+	chr4.2:18004931-18004950	None:intergenic	35.0%
	TATACCTTCTCATGTGTTCA+AGG	-	chr4.2:18005928-18005947	MS.gene028352:CDS	35.0%
	TCATTTACCTCTTCAGCAAT+TGG	-	chr4.2:18004378-18004397	MS.gene028352:CDS	35.0%
	TCTAATCCAGTTTCAGGAAT+TGG	+	chr4.2:18005488-18005507	None:intergenic	35.0%
	TGATTCAATACTCGGTTCAT+TGG	-	chr4.2:18005639-18005658	MS.gene028352:CDS	35.0%
	TGCTCACATAATTGATGTGA+AGG	-	chr4.2:18004944-18004963	MS.gene028352:CDS	35.0%
	TGTAGATAAACTCATACCCT+TGG	-	chr4.2:18005286-18005305	MS.gene028352:CDS	35.0%
	TTTCCACTTCTATGTGGAAA+TGG	+	chr4.2:18005611-18005630	None:intergenic	35.0%
	TTTCTTGACAGAGAAGCAAT+GGG	-	chr4.2:18004972-18004991	MS.gene028352:CDS	35.0%
!	AAACTGGATTAGAAGGCATA+TGG	-	chr4.2:18005495-18005514	MS.gene028352:CDS	35.0%
!	ATGGTATTGGGAACAGATTA+TGG	+	chr4.2:18004616-18004635	None:intergenic	35.0%
!	ATTCCTGAAACTGGATTAGA+AGG	-	chr4.2:18005488-18005507	MS.gene028352:CDS	35.0%
!	GTGACAATTACAAGAGGTTT+TGG	+	chr4.2:18004564-18004583	None:intergenic	35.0%
!	TGGCCTTTATTTGATGAAGA+TGG	-	chr4.2:18005515-18005534	MS.gene028352:CDS	35.0%
!	TTATCCATTTTGCCACCATA+TGG	+	chr4.2:18005569-18005588	None:intergenic	35.0%
!!	AATGGGTGAGGATTTGTTTT+GGG	-	chr4.2:18004989-18005008	MS.gene028352:CDS	35.0%
!!	CAACAAAGCTTGTTAACAAG+TGG	-	chr4.2:18005129-18005148	MS.gene028352:CDS	35.0%
!!	CTTGGTGACTTTGAAACAAA+AGG	+	chr4.2:18005734-18005753	None:intergenic	35.0%
!!	TTGGAGTATTGATGTGTAAG+AGG	+	chr4.2:18004502-18004521	None:intergenic	35.0%
!!	TTTCAAGCTTTGTTTCTTGG+AGG	-	chr4.2:18005263-18005282	MS.gene028352:CDS	35.0%
!!!	AGGATTTGTTTTGGGCTATT+AGG	-	chr4.2:18004997-18005016	MS.gene028352:CDS	35.0%
!!!	GATTTGTTTTGGGCTATTAG+GGG	-	chr4.2:18004999-18005018	MS.gene028352:CDS	35.0%
!!!	GGATTTGTTTTGGGCTATTA+GGG	-	chr4.2:18004998-18005017	MS.gene028352:CDS	35.0%
!!!	GTTTTGGTGTCATAGTTTCA+TGG	-	chr4.2:18005036-18005055	MS.gene028352:CDS	35.0%
	AAAACTGCATGGGTTCAATC+TGG	-	chr4.2:18004759-18004778	MS.gene028352:CDS	40.0%
	AATCTGTAGGCCATGGTATT+GGG	+	chr4.2:18004628-18004647	None:intergenic	40.0%
	AGGAAACTTCTCTTGAACCA+AGG	+	chr4.2:18005306-18005325	None:intergenic	40.0%
	AGTAGTACCAATTGCTGAAG+AGG	+	chr4.2:18004388-18004407	None:intergenic	40.0%
	ATGCCTTCTAATCCAGTTTC+AGG	+	chr4.2:18005494-18005513	None:intergenic	40.0%
	CTACAGATTCGAATTCGAAG+CGG	-	chr4.2:18004639-18004658	MS.gene028352:CDS	40.0%
	CTGTTAAGCAACACTTCAGT+TGG	+	chr4.2:18005413-18005432	None:intergenic	40.0%
	GGAAACTTCTCTTGAACCAA+GGG	+	chr4.2:18005305-18005324	None:intergenic	40.0%
	GGAACCTTGTTGCGTAAATA+TGG	-	chr4.2:18004897-18004916	MS.gene028352:CDS	40.0%
	GTTTCCATATGGTGGCAAAA+TGG	-	chr4.2:18005562-18005581	MS.gene028352:CDS	40.0%
	GTTTCTTGACAGAGAAGCAA+TGG	-	chr4.2:18004971-18004990	MS.gene028352:CDS	40.0%
!	ACTTCAGTTGGAGAACCTTT+TGG	+	chr4.2:18005401-18005420	None:intergenic	40.0%
!	AGAGGTGTGACAATTACAAG+AGG	+	chr4.2:18004570-18004589	None:intergenic	40.0%
!	TGTGTAAGAGGAATTGGCTT+TGG	+	chr4.2:18004490-18004509	None:intergenic	40.0%
!!	CAATGGGTGAGGATTTGTTT+TGG	-	chr4.2:18004988-18005007	MS.gene028352:CDS	40.0%
!!!	AAGAGGTTTTGGTGTTGTGT+TGG	+	chr4.2:18004553-18004572	None:intergenic	40.0%
	ACAGTAGGACAAACACTTGC+AGG	+	chr4.2:18004843-18004862	None:intergenic	45.0%
	CAAGAGAAGTTTCCTGAGCT+TGG	-	chr4.2:18005311-18005330	MS.gene028352:CDS	45.0%
	CAGTAGGACAAACACTTGCA+GGG	+	chr4.2:18004842-18004861	None:intergenic	45.0%
	CGCTTCGAATTCGAATCTGT+AGG	+	chr4.2:18004641-18004660	None:intergenic	45.0%
	GAAGTTTCCTGAGCTTGGTT+TGG	-	chr4.2:18005316-18005335	MS.gene028352:CDS	45.0%
	GAATCTGTAGGCCATGGTAT+TGG	+	chr4.2:18004629-18004648	None:intergenic	45.0%
	GAATTCGAATCTGTAGGCCA+TGG	+	chr4.2:18004635-18004654	None:intergenic	45.0%
	GCAAGTGTTTGTCCTACTGT+AGG	-	chr4.2:18004843-18004862	MS.gene028352:CDS	45.0%
	GTTCAATCTGGTGCAACACT+TGG	-	chr4.2:18004771-18004790	MS.gene028352:CDS	45.0%
	GTTTGTCCTACTGTAGGTGT+TGG	-	chr4.2:18004849-18004868	MS.gene028352:CDS	45.0%
	TCGGTTCATTGGCATCAAGA+AGG	-	chr4.2:18005650-18005669	MS.gene028352:CDS	45.0%
	TCTCTAACCAAACCAAGCTC+AGG	+	chr4.2:18005326-18005345	None:intergenic	45.0%
	TGTCCCTTGAACACATGAGA+AGG	+	chr4.2:18005935-18005954	None:intergenic	45.0%
	TTGGCATCAAGAAGGTGATG+AGG	-	chr4.2:18005658-18005677	MS.gene028352:CDS	45.0%
!!!	TTGTTTTGGGCTATTAGGGG+TGG	-	chr4.2:18005002-18005021	MS.gene028352:CDS	45.0%
	AAGACAGACCCTCAAAGTCG+TGG	+	chr4.2:18004668-18004687	None:intergenic	50.0%
	CAGATTCGAATTCGAAGCGG+CGG	-	chr4.2:18004642-18004661	MS.gene028352:CDS	50.0%
	GCATCAAGAAGGTGATGAGG+TGG	-	chr4.2:18005661-18005680	MS.gene028352:CDS	50.0%
	TGACAGAGAAGCAATGGGTG+AGG	-	chr4.2:18004977-18004996	MS.gene028352:CDS	50.0%
	TGTCCACCAACACCTACAGT+AGG	+	chr4.2:18004858-18004877	None:intergenic	50.0%
!	TTTTGGGCTATTAGGGGTGG+TGG	-	chr4.2:18005005-18005024	MS.gene028352:CDS	50.0%
!!	CACTTCAGTGGTGGTGGATA+TGG	-	chr4.2:18004876-18004895	MS.gene028352:CDS	50.0%
!!	TGTCCTACTGTAGGTGTTGG+TGG	-	chr4.2:18004852-18004871	MS.gene028352:CDS	50.0%
!	GTTGGTGGACACTTCAGTGG+TGG	-	chr4.2:18004867-18004886	MS.gene028352:CDS	55.0%
!!	GGTGTTGGTGGACACTTCAG+TGG	-	chr4.2:18004864-18004883	MS.gene028352:CDS	55.0%
!!!	GGTGGTGGAGGAGCAAGTTT+TGG	-	chr4.2:18005020-18005039	MS.gene028352:CDS	55.0%
	GGTGGACACTTCAGTGGTGG+TGG	-	chr4.2:18004870-18004889	MS.gene028352:CDS	60.0%
!	TGGGCTATTAGGGGTGGTGG+AGG	-	chr4.2:18005008-18005027	MS.gene028352:CDS	60.0%
	AAGCGGCGGCCACGACTTTG+AGG	-	chr4.2:18004656-18004675	MS.gene028352:CDS	65.0%
	AGCGGCGGCCACGACTTTGA+GGG	-	chr4.2:18004657-18004676	MS.gene028352:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	18004327	18005961	18004327	ID=MS.gene028352
chr4.2	mRNA	18004327	18005961	18004327	ID=MS.gene028352.t1;Parent=MS.gene028352
chr4.2	exon	18004327	18005961	18004327	ID=MS.gene028352.t1.exon1;Parent=MS.gene028352.t1
chr4.2	CDS	18004327	18005961	18004327	ID=cds.MS.gene028352.t1;Parent=MS.gene028352.t1

Gene Sequence

>MS.gene028352

ATGATGCCTCGAAGCTCATATTTGTCTATTATACTAATTGCTATTTTATTTTCATTTACCTCTTCAGCAATTGGTACTACTACTAATGAAGATAATAACTTCCTTCAATGTCTCCATAGTTATTCACATAACTCAACTTCAATCTCTGAAGTTGTGTACACCAAAGCCAATTCCTCTTACACATCAATACTCCAATTCTCAACTCAAAATCTCAGATTTGCAACCAACACAACACCAAAACCTCTTGTAATTGTCACACCTCTAGAAATATCCCATATTCAAGCAACCATAATCTGTTCCCAATACCATGGCCTACAGATTCGAATTCGAAGCGGCGGCCACGACTTTGAGGGTCTGTCTTATGTCTCTGAAGTTCCATTTGTCGTCATTGATCTCATAAACTTCAGAGAAATTGAAATAAATGTACACAAAAAAACTGCATGGGTTCAATCTGGTGCAACACTTGGTGAACTTTACTACGCAATTAGCCAAAAAAGCAAAACTCTAGGTTTCCCTGCAAGTGTTTGTCCTACTGTAGGTGTTGGTGGACACTTCAGTGGTGGTGGATATGGAACCTTGTTGCGTAAATATGGTCTTGCAGCCGATAACATCATTGATGCTCACATAATTGATGTGAAGGGTAGGTTTCTTGACAGAGAAGCAATGGGTGAGGATTTGTTTTGGGCTATTAGGGGTGGTGGAGGAGCAAGTTTTGGTGTCATAGTTTCATGGAAGATTAAACTTGTTCAAGTTCCATCAATTGTTACTGTGTTTACTGTTCCAAAAACATTGGAACAAAATGCAACAAAGCTTGTTAACAAGTGGCAATTTTTGGCAAGTAAACTTGATGAAAATATAGAGATGAATATTGTCTGGCAAAGGGTAAATTTAAATTCAAGTAAAAAAGGTGAGTCAAAGTCACCAGTACTAGTTTTATTTCAAGCTTTGTTTCTTGGAGGTGTAGATAAACTCATACCCTTGGTTCAAGAGAAGTTTCCTGAGCTTGGTTTGGTTAGAGAATATTGTATTGAAATGAGTTGGATTGAATCTGTTCTTTACTTTTTTCAGTTTCCAAAAGGTTCTCCAACTGAAGTGTTGCTTAACAGAACACAAGCTACACTTGATATTTTCAAAGCAAAATCTGATTTTGTGAGAATTCCAATTCCTGAAACTGGATTAGAAGGCATATGGCCTTTATTTGATGAAGATGGTTCCAAAGATGCAATGATGATATGGTTTCCATATGGTGGCAAAATGGATAATATTTCAGAGTCTGAAATTCCATTTCCACATAGAAGTGGAAACTTATTCATGATTCAATACTCGGTTCATTGGCATCAAGAAGGTGATGAGGTGGAAAAATTGCACATAAATTGGATTAGAAAACTGTATAGTTATATGGAACCTTTTGTTTCAAAGTCACCAAGAGCTGCATATATTAACTATAGAGATCTTGATATTGGGGTGAATAATAACAATGGATACACAAGCTATAAGCAAGCTAGTATTTGGGGTGTTAAATACTTCAAGAACAACTTCAAAAGATTGGCAAAAGTGAAGACAAAAGTTGATCCTCTAAACTTCTTCAGAAATGAACAGAGTATACCTTCTCATGTGTTCAAGGGACACAAATAG

Protein sequence

>MS.gene028352.t1

MMPRSSYLSIILIAILFSFTSSAIGTTTNEDNNFLQCLHSYSHNSTSISEVVYTKANSSYTSILQFSTQNLRFATNTTPKPLVIVTPLEISHIQATIICSQYHGLQIRIRSGGHDFEGLSYVSEVPFVVIDLINFREIEINVHKKTAWVQSGATLGELYYAISQKSKTLGFPASVCPTVGVGGHFSGGGYGTLLRKYGLAADNIIDAHIIDVKGRFLDREAMGEDLFWAIRGGGGASFGVIVSWKIKLVQVPSIVTVFTVPKTLEQNATKLVNKWQFLASKLDENIEMNIVWQRVNLNSSKKGESKSPVLVLFQALFLGGVDKLIPLVQEKFPELGLVREYCIEMSWIESVLYFFQFPKGSPTEVLLNRTQATLDIFKAKSDFVRIPIPETGLEGIWPLFDEDGSKDAMMIWFPYGGKMDNISESEIPFPHRSGNLFMIQYSVHWHQEGDEVEKLHINWIRKLYSYMEPFVSKSPRAAYINYRDLDIGVNNNNGYTSYKQASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSHVFKGHK