AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36444

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36444.t1 MTR_4g094518 98.120 532 10 0 1 532 1 532 0.0 1078
MS.gene36444.t1 MTR_2g031390 79.961 509 102 0 24 532 23 531 0.0 865
MS.gene36444.t1 MTR_4g094520 69.962 526 148 3 10 532 16 534 0.0 735
MS.gene36444.t1 MTR_3g009760 54.080 527 228 9 10 530 4 522 0.0 557
MS.gene36444.t1 MTR_3g009820 53.890 527 229 9 10 530 4 522 0.0 555
MS.gene36444.t1 MTR_2g031590 51.306 536 250 7 2 531 3 533 0.0 555
MS.gene36444.t1 MTR_4g094488 53.484 531 236 6 6 528 8 535 0.0 553
MS.gene36444.t1 MTR_3g009880 53.524 525 232 8 10 530 4 520 0.0 552
MS.gene36444.t1 MTR_2g031560 50.667 525 253 5 8 530 3 523 0.0 552
MS.gene36444.t1 MTR_4g094498 55.311 499 217 3 33 530 41 534 0.0 552
MS.gene36444.t1 MTR_4g094492 51.859 538 245 7 2 530 4 536 0.0 544
MS.gene36444.t1 MTR_4g094495 52.166 531 245 5 5 528 10 538 0.0 534
MS.gene36444.t1 MTR_2g031460 52.778 504 233 4 27 530 29 527 0.0 533
MS.gene36444.t1 MTR_2g031420 51.619 525 249 4 6 530 8 527 0.0 531
MS.gene36444.t1 MTR_4g094478 51.613 527 246 6 10 530 12 535 0.0 531
MS.gene36444.t1 MTR_4g094480 50.375 534 253 7 4 528 3 533 0.0 519
MS.gene36444.t1 MTR_4g094418 55.149 437 186 5 102 530 1 435 6.61e-174 504
MS.gene36444.t1 MTR_2g031490 48.868 530 261 6 8 531 14 539 5.04e-169 489
MS.gene36444.t1 MTR_4g091200 49.794 486 230 7 50 528 46 524 1.99e-167 485
MS.gene36444.t1 MTR_2g031510 48.919 509 253 4 27 531 36 541 4.09e-165 479
MS.gene36444.t1 MTR_6g017205 46.992 532 254 10 11 528 7 524 1.29e-164 478
MS.gene36444.t1 MTR_4g091150 47.135 541 258 10 11 530 7 540 2.99e-164 477
MS.gene36444.t1 MTR_4g094515 47.180 532 274 5 4 531 623 1151 8.79e-164 495
MS.gene36444.t1 MTR_4g094515 48.419 506 254 4 30 531 39 541 1.14e-155 474
MS.gene36444.t1 MTR_4g088355 47.222 504 257 7 30 528 32 531 1.43e-162 473
MS.gene36444.t1 MTR_4g057990 46.692 529 259 10 8 528 7 520 1.87e-159 464
MS.gene36444.t1 MTR_4g091190 45.558 529 268 8 11 528 7 526 8.50e-159 463
MS.gene36444.t1 MTR_4g091170 45.395 456 227 6 75 528 105 540 8.02e-149 439
MS.gene36444.t1 MTR_2g023590 46.352 466 240 6 67 528 5 464 2.27e-147 432
MS.gene36444.t1 MTR_1g076830 39.882 509 294 6 30 530 31 535 4.51e-118 359
MS.gene36444.t1 MTR_3g009850 56.579 228 97 2 305 530 1 228 1.34e-85 265
MS.gene36444.t1 MTR_2g031600 52.439 246 109 3 1 246 7 244 1.98e-78 252
MS.gene36444.t1 MTR_2g031600 54.140 157 71 1 376 531 245 401 1.19e-56 195
MS.gene36444.t1 MTR_8g062280 57.732 97 13 1 431 527 4 72 4.17e-32 118
MS.gene36444.t1 MTR_2g084370 44.144 111 40 2 128 238 1 89 2.47e-26 103
MS.gene36444.t1 MTR_2g084405 44.565 92 46 1 128 219 1 87 1.78e-17 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36444.t1 AT1G30760 65.675 504 167 2 27 528 49 548 0.0 686
MS.gene36444.t1 AT1G30760 65.675 504 167 2 27 528 31 530 0.0 685
MS.gene36444.t1 AT2G34790 63.098 523 185 3 8 528 12 528 0.0 674
MS.gene36444.t1 AT5G44400 62.570 537 190 7 2 530 3 536 0.0 661
MS.gene36444.t1 AT5G44390 58.519 540 207 8 7 532 6 542 0.0 619
MS.gene36444.t1 AT5G44380 59.533 514 200 5 23 531 70 580 0.0 592
MS.gene36444.t1 AT5G44380 59.533 514 200 5 23 531 30 540 0.0 592
MS.gene36444.t1 AT1G30700 51.683 505 239 4 29 531 26 527 1.40e-176 508
MS.gene36444.t1 AT4G20820 50.000 506 237 8 28 530 34 526 2.96e-170 492
MS.gene36444.t1 AT5G44360 48.588 531 255 10 10 532 12 532 9.98e-168 486
MS.gene36444.t1 AT5G44360 48.588 531 255 10 10 532 28 548 1.09e-167 486
MS.gene36444.t1 AT4G20840 48.527 509 246 7 27 528 34 533 4.57e-164 477
MS.gene36444.t1 AT4G20860 52.193 456 210 6 77 530 80 529 1.89e-163 475
MS.gene36444.t1 AT1G34575 47.140 507 251 8 27 528 28 522 2.02e-162 472
MS.gene36444.t1 AT1G30710 47.269 531 261 9 8 530 9 528 5.68e-162 471
MS.gene36444.t1 AT1G11770 46.565 524 268 8 13 531 14 530 1.37e-159 465
MS.gene36444.t1 AT5G44440 47.238 525 253 10 18 528 13 527 6.08e-159 463
MS.gene36444.t1 AT5G44440 46.765 541 262 11 4 528 67 597 6.97e-159 466
MS.gene36444.t1 AT4G20800 46.813 502 262 4 29 529 27 524 3.57e-158 461
MS.gene36444.t1 AT1G26380 46.857 525 265 9 11 530 10 525 1.84e-157 459
MS.gene36444.t1 AT5G44410 49.903 513 226 11 28 528 34 527 6.93e-157 458
MS.gene36444.t1 AT1G26420 45.833 528 278 7 8 532 5 527 3.03e-154 451
MS.gene36444.t1 AT1G30730 45.802 524 276 6 8 528 5 523 1.39e-153 449
MS.gene36444.t1 AT1G30720 47.913 503 252 7 30 528 28 524 3.52e-152 446
MS.gene36444.t1 AT1G26390 46.337 505 264 5 31 532 29 529 7.36e-152 445
MS.gene36444.t1 AT4G20830 47.741 509 250 7 29 530 37 536 2.30e-151 444
MS.gene36444.t1 AT4G20830 47.741 509 250 7 29 530 37 536 1.22e-150 443
MS.gene36444.t1 AT1G26410 45.545 505 266 7 31 532 53 551 6.10e-149 439
MS.gene36444.t1 AT1G26400 46.272 523 268 8 11 529 10 523 6.35e-149 437
MS.gene36444.t1 AT1G01980 46.289 512 260 8 29 531 30 535 1.67e-146 432
MS.gene36444.t1 AT1G30740 45.028 533 278 9 8 531 6 532 1.04e-145 430
MS.gene36444.t1 AT1G30740 45.028 533 278 9 8 531 3 529 1.23e-145 429
MS.gene36444.t1 AT2G34810 45.543 516 268 8 24 530 28 539 1.14e-142 422

Find 118 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAAAGGTGTTTCGATTT+TGG 0.085027 4.1:+18795749 None:intergenic
CCATGGGAGAGGATCTATTT+TGG 0.198723 4.1:-18795449 MS.gene36444:CDS
GAAGCTTTGGTATACTTCTT+TGG 0.234046 4.1:-18795404 MS.gene36444:CDS
AAGCAACTGGTTGGGGTTAT+AGG 0.242196 4.1:-18794633 MS.gene36444:CDS
AAGATAGTCCTTTGATGATT+TGG 0.243540 4.1:-18794912 MS.gene36444:CDS
TACGAGAAAAGTTCGGTTCT+TGG 0.245296 4.1:-18795624 MS.gene36444:CDS
TTCCTTGTCAAACCCAATTC+AGG 0.269486 4.1:+18795123 None:intergenic
GGGAAGCTTATGTGAATTAT+AGG 0.274126 4.1:-18794702 MS.gene36444:CDS
GAATTATAGGGATCTTGATT+TGG 0.282140 4.1:-18794689 MS.gene36444:CDS
CACCACTTCTTACTCTTAGA+TGG 0.284899 4.1:+18795802 None:intergenic
GATAATAGAAGGACTAAAAT+TGG 0.290188 4.1:+18796083 None:intergenic
AATTATAGGGATCTTGATTT+GGG 0.302116 4.1:-18794688 MS.gene36444:CDS
AGTCCTTCAATACCAGTTTC+TGG 0.312624 4.1:+18794955 None:intergenic
AAATTCAGTACTTGTCTATA+TGG 0.320076 4.1:-18794813 MS.gene36444:CDS
CTGCTTGGACATGGGAATCT+TGG 0.323117 4.1:+18795853 None:intergenic
GTGAATATGAATTCGGGTTT+CGG 0.327667 4.1:+18795882 None:intergenic
TCAATACCAGTTTCTGGTAT+TGG 0.333889 4.1:+18794961 None:intergenic
GTTGAGAATGAAGGTTCATT+TGG 0.337178 4.1:+18795954 None:intergenic
CAAAGCATGTAGACTGGATT+AGG 0.349139 4.1:-18794768 MS.gene36444:CDS
GGAGGGTGTGAATATGAATT+CGG 0.357226 4.1:+18795875 None:intergenic
ACTGTCACTGTTGGTGGAAC+AGG 0.360366 4.1:+18795363 None:intergenic
CCACCTGAAGTTCTTCTTAA+GGG 0.361233 4.1:-18795036 MS.gene36444:CDS
TAGATGGATTCCGAGTTTCT+TGG 0.364310 4.1:+18795818 None:intergenic
GTTCCATTTCTATGTGGAAA+AGG 0.370940 4.1:+18794844 None:intergenic
GGAACATTGATGAGAAAATA+TGG 0.375969 4.1:-18795540 MS.gene36444:CDS
AAATCTGTTCTCTATATTGC+TGG 0.377366 4.1:-18795075 MS.gene36444:CDS
TGCTTGGACATGGGAATCTT+GGG 0.378635 4.1:+18795854 None:intergenic
GAGTTTCTTGGAGCAAATTA+CGG 0.395398 4.1:+18795830 None:intergenic
GAGGGTGTGAATATGAATTC+GGG 0.402046 4.1:+18795876 None:intergenic
GTGTAAATTGTTGTATGAAA+TGG 0.405051 4.1:+18795978 None:intergenic
CTATATAGAAGCAACTGGTT+GGG 0.406715 4.1:-18794641 MS.gene36444:CDS
AATTCGGGTTTCGGTGTAGA+TGG 0.409131 4.1:+18795891 None:intergenic
ACCACCTGAAGTTCTTCTTA+AGG 0.409930 4.1:-18795037 MS.gene36444:CDS
CACTAAAACCAACACTGCTT+GGG 0.410854 4.1:-18795688 MS.gene36444:CDS
GGTGGTGGAGGTGGAAGCTT+TGG 0.413015 4.1:-18795417 MS.gene36444:CDS
ATGAAAGTGATGATAATAGA+AGG 0.416106 4.1:+18796072 None:intergenic
AGCAATGAACCTAAGGTGTT+TGG 0.416350 4.1:-18795916 MS.gene36444:CDS
ACACTAAAACCAACACTGCT+TGG 0.420439 4.1:-18795689 MS.gene36444:CDS
TTCCCCTTAAGAAGAACTTC+AGG 0.422895 4.1:+18795033 None:intergenic
TCGGTTCTTGGTTACCCTGC+AGG 0.425653 4.1:-18795612 MS.gene36444:CDS
CACATAACAGGAGGTGCATA+TGG 0.426699 4.1:-18795561 MS.gene36444:CDS
GCTATAAGAGGTGGTGGAGG+TGG 0.427869 4.1:-18795426 MS.gene36444:CDS
CTGAATTCAGGTTGAGACAT+TGG 0.430119 4.1:+18796012 None:intergenic
GGAAGCTTATGTGAATTATA+GGG 0.435715 4.1:-18794701 MS.gene36444:CDS
CTTGGATACTTAGACACATA+AGG 0.436193 4.1:+18794724 None:intergenic
TTGAAAGAATTCTTAAATGT+TGG 0.441327 4.1:+18795009 None:intergenic
AAAATTGGCAAGGGTAAGAT+TGG 0.445220 4.1:+18796098 None:intergenic
GCTCGAATCGTTGATGCAAA+TGG 0.448524 4.1:-18795492 MS.gene36444:CDS
TTCCATTTCTATGTGGAAAA+GGG 0.450370 4.1:+18794845 None:intergenic
GACTTCACCGATTGTGGCAC+CGG 0.459746 4.1:+18795659 None:intergenic
GGTGTCGGTGGACACATAAC+AGG 0.463630 4.1:-18795573 MS.gene36444:CDS
TGGATCCTGAAAATGTGTTT+AGG 0.464198 4.1:-18794564 MS.gene36444:CDS
AAGATTGTCAAGAAACTAGT+TGG 0.464462 4.1:-18795101 MS.gene36444:CDS
TGGAGCAAATTACGGCTGCT+TGG 0.470001 4.1:+18795838 None:intergenic
ATACCAGAAACTGGTATTGA+AGG 0.470097 4.1:-18794958 MS.gene36444:CDS
AGGGAACCAATACCAGAAAC+TGG 0.473053 4.1:-18794967 MS.gene36444:CDS
AAGCTTGTGCATAGACCTGC+AGG 0.473568 4.1:+18795597 None:intergenic
GCTATATAGAAGCAACTGGT+TGG 0.478903 4.1:-18794642 MS.gene36444:CDS
GCAGGTCTATGCACAAGCTT+AGG 0.479193 4.1:-18795594 MS.gene36444:CDS
TTGATGATTTGGAATCCATA+TGG 0.487109 4.1:-18794901 MS.gene36444:CDS
GGTTCATTGCTAAGGAATCA+AGG 0.487996 4.1:+18795928 None:intergenic
AAATTACGGCTGCTTGGACA+TGG 0.488116 4.1:+18795844 None:intergenic
TAATTCACATAAGCTTCCCT+TGG 0.490513 4.1:+18794706 None:intergenic
TTGGACATGGGAATCTTGGG+AGG 0.501683 4.1:+18795857 None:intergenic
CAGAATATACGAGAAAAGTT+CGG 0.501978 4.1:-18795631 MS.gene36444:CDS
TATATAGAAGCAACTGGTTG+GGG 0.502576 4.1:-18794640 MS.gene36444:CDS
AACACTGCTTGGGTTCAATC+CGG 0.504753 4.1:-18795678 MS.gene36444:CDS
ATTCCTTAGCAATGAACCTA+AGG 0.505108 4.1:-18795923 MS.gene36444:CDS
ACAAGCTATATAGAAGCAAC+TGG 0.506037 4.1:-18794646 MS.gene36444:CDS
GTTCAATCCGGTGCCACAAT+CGG 0.508275 4.1:-18795666 MS.gene36444:CDS
ACACCTTAGGTTCATTGCTA+AGG 0.508803 4.1:+18795920 None:intergenic
TAGATGGTGCCAAACACCTT+AGG 0.511494 4.1:+18795907 None:intergenic
TACAATGTTCCATTTCTATG+TGG 0.513684 4.1:+18794838 None:intergenic
TTGTTTCCAACACTAGCAGC+TGG 0.514986 4.1:+18795231 None:intergenic
CTTATGTGTCTAAGTATCCA+AGG 0.522790 4.1:-18794723 MS.gene36444:CDS
TGGGCTATAAGAGGTGGTGG+AGG 0.525036 4.1:-18795429 MS.gene36444:CDS
ACTGTCTTGAAGTAATAAAG+AGG 0.526763 4.1:+18796040 None:intergenic
ATCCAACCAGCTGCTAGTGT+TGG 0.528310 4.1:-18795237 MS.gene36444:CDS
GTAATAGACTTCACCGATTG+TGG 0.529754 4.1:+18795653 None:intergenic
GTCGATTTAGTCAAACTTCG+CGG 0.531435 4.1:-18795723 MS.gene36444:CDS
TTGATGAGAAAATATGGTCT+TGG 0.539868 4.1:-18795534 MS.gene36444:CDS
AATTACGGCTGCTTGGACAT+GGG 0.540054 4.1:+18795845 None:intergenic
GCTTTGGTATACTTCTTTGG+TGG 0.541590 4.1:-18795401 MS.gene36444:CDS
TCAAGGATGGTTGAGAATGA+AGG 0.541625 4.1:+18795945 None:intergenic
CATTCTAGACAGAAAAGCCA+TGG 0.543661 4.1:-18795466 MS.gene36444:CDS
TTCCAACACTAGCAGCTGGT+TGG 0.544033 4.1:+18795235 None:intergenic
TAGAAGGACTAAAATTGGCA+AGG 0.572624 4.1:+18796088 None:intergenic
GGATTGAACCCAAGCAGTGT+TGG 0.573765 4.1:+18795680 None:intergenic
AGAAGGACTAAAATTGGCAA+GGG 0.574034 4.1:+18796089 None:intergenic
CCCTTAAGAAGAACTTCAGG+TGG 0.574211 4.1:+18795036 None:intergenic
CACCTGAAGTTCTTCTTAAG+GGG 0.576566 4.1:-18795035 MS.gene36444:CDS
ACTTCAGGTGGTGTAACACT+TGG 0.576670 4.1:+18795048 None:intergenic
ATGTTGCAAAGCATGTAGAC+TGG 0.576679 4.1:-18794774 MS.gene36444:CDS
TTCCTGAATTGGGTTTGACA+AGG 0.577097 4.1:-18795125 MS.gene36444:CDS
GTATTGAAGGACTGTGGCAG+AGG 0.580608 4.1:-18794945 MS.gene36444:CDS
CATTGCTAAGGAATCAAGGA+TGG 0.582931 4.1:+18795932 None:intergenic
AGACAGAAAAGCCATGGGAG+AGG 0.586996 4.1:-18795460 MS.gene36444:CDS
AGTGGTGGCCATGACTATGA+AGG 0.587071 4.1:-18795786 MS.gene36444:CDS
ACTAAATCGACAACTATGAA+AGG 0.587233 4.1:+18795735 None:intergenic
TATGGATTCCAAATCATCAA+AGG 0.588783 4.1:+18794904 None:intergenic
ACGAAAGTCCTTCATAGTCA+TGG 0.592842 4.1:+18795778 None:intergenic
GTAATTTGCTCCAAGAAACT+CGG 0.594947 4.1:-18795828 MS.gene36444:CDS
GTACTTGTCTATATGGCAAG+AGG 0.601770 4.1:-18794806 MS.gene36444:CDS
CCAAAATAGATCCTCTCCCA+TGG 0.610823 4.1:+18795449 None:intergenic
ATGATTTGGAATCCATATGG+TGG 0.611221 4.1:-18794898 MS.gene36444:CDS
TGGACATGGGAATCTTGGGA+GGG 0.614117 4.1:+18795858 None:intergenic
CTATGCACAAGCTTAGGTGT+CGG 0.620969 4.1:-18795588 MS.gene36444:CDS
TTATGTGTCTAAGTATCCAA+GGG 0.622460 4.1:-18794722 MS.gene36444:CDS
GGTTCAGATAAAGACTAGAG+TGG 0.623449 4.1:-18794584 MS.gene36444:CDS
TACTTGTCTATATGGCAAGA+GGG 0.628128 4.1:-18794805 MS.gene36444:CDS
TGCACAAGCTTAGGTGTCGG+TGG 0.631461 4.1:-18795585 MS.gene36444:CDS
CATCTAAGAGTAAGAAGTGG+TGG 0.632043 4.1:-18795801 MS.gene36444:CDS
ATTCTAGACAGAAAAGCCAT+GGG 0.639640 4.1:-18795465 MS.gene36444:CDS
GTCACTAAAACTTTAGAACA+AGG 0.647248 4.1:-18795333 MS.gene36444:CDS
ATCCATCTAAGAGTAAGAAG+TGG 0.653976 4.1:-18795804 MS.gene36444:CDS
GTCGGTGGACACATAACAGG+AGG 0.682458 4.1:-18795570 MS.gene36444:CDS
AGCTTGTGCATAGACCTGCA+GGG 0.712907 4.1:+18795598 None:intergenic
AAACTGGTATTGAAGGACTG+TGG 0.712939 4.1:-18794951 MS.gene36444:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAGAATTCTTAAATGT+TGG + chr4.1:18795632-18795651 None:intergenic 20.0%
!!! AAGAGATTTTCATCAATAAA+AGG + chr4.1:18795368-18795387 None:intergenic 20.0%
! AAATTCAGTACTTGTCTATA+TGG - chr4.1:18795825-18795844 MS.gene36444:CDS 25.0%
! AATTATAGGGATCTTGATTT+GGG - chr4.1:18795950-18795969 MS.gene36444:CDS 25.0%
! ATGAAAGTGATGATAATAGA+AGG + chr4.1:18794569-18794588 None:intergenic 25.0%
! CTACAAAAATTCTTCATAGA+TGG - chr4.1:18795330-18795349 MS.gene36444:CDS 25.0%
! GATAATAGAAGGACTAAAAT+TGG + chr4.1:18794558-18794577 None:intergenic 25.0%
! GTGTAAATTGTTGTATGAAA+TGG + chr4.1:18794663-18794682 None:intergenic 25.0%
!! AAAACAAGTTTTCCTGAATT+GGG - chr4.1:18795503-18795522 MS.gene36444:CDS 25.0%
!!! TAAGGGTAATTTTAACAAGT+TGG - chr4.1:18796033-18796052 MS.gene36444:CDS 25.0%
!!! TCTTATAATGCTGTTTTTCT+TGG - chr4.1:18795452-18795471 MS.gene36444:CDS 25.0%
AAATCTGTTCTCTATATTGC+TGG - chr4.1:18795563-18795582 MS.gene36444:CDS 30.0%
AAGATTGTCAAGAAACTAGT+TGG - chr4.1:18795537-18795556 MS.gene36444:CDS 30.0%
ACTAAATCGACAACTATGAA+AGG + chr4.1:18794906-18794925 None:intergenic 30.0%
ACTGTCTTGAAGTAATAAAG+AGG + chr4.1:18794601-18794620 None:intergenic 30.0%
CAGAATATACGAGAAAAGTT+CGG - chr4.1:18795007-18795026 MS.gene36444:CDS 30.0%
GAATTATAGGGATCTTGATT+TGG - chr4.1:18795949-18795968 MS.gene36444:CDS 30.0%
GGAACATTGATGAGAAAATA+TGG - chr4.1:18795098-18795117 MS.gene36444:CDS 30.0%
GGAAGCTTATGTGAATTATA+GGG - chr4.1:18795937-18795956 MS.gene36444:CDS 30.0%
TACAATGTTCCATTTCTATG+TGG + chr4.1:18795803-18795822 None:intergenic 30.0%
TATGGATTCCAAATCATCAA+AGG + chr4.1:18795737-18795756 None:intergenic 30.0%
TTATGTGTCTAAGTATCCAA+GGG - chr4.1:18795916-18795935 MS.gene36444:CDS 30.0%
TTCCATTTCTATGTGGAAAA+GGG + chr4.1:18795796-18795815 None:intergenic 30.0%
TTGATGAGAAAATATGGTCT+TGG - chr4.1:18795104-18795123 MS.gene36444:CDS 30.0%
! AAGATAGTCCTTTGATGATT+TGG - chr4.1:18795726-18795745 MS.gene36444:CDS 30.0%
! AAGCAAAATCAGATTTTGTG+AGG - chr4.1:18795651-18795670 MS.gene36444:CDS 30.0%
! AGCAAAATCAGATTTTGTGA+GGG - chr4.1:18795652-18795671 MS.gene36444:CDS 30.0%
! GAAAACAAGTTTTCCTGAAT+TGG - chr4.1:18795502-18795521 MS.gene36444:CDS 30.0%
! GATATGTTTTGTCTGAATTC+AGG + chr4.1:18794641-18794660 None:intergenic 30.0%
! TTGATGATTTGGAATCCATA+TGG - chr4.1:18795737-18795756 MS.gene36444:CDS 30.0%
! TTGGGGTTATAGGTATTTTA+AGG - chr4.1:18796015-18796034 MS.gene36444:CDS 30.0%
!! GTCACTAAAACTTTAGAACA+AGG - chr4.1:18795305-18795324 MS.gene36444:CDS 30.0%
!! TGGGGTTATAGGTATTTTAA+GGG - chr4.1:18796016-18796035 MS.gene36444:CDS 30.0%
!!! TATGAAAGGTGTTTCGATTT+TGG + chr4.1:18794892-18794911 None:intergenic 30.0%
AAAATTGGCAAGGGTAAGAT+TGG + chr4.1:18794543-18794562 None:intergenic 35.0%
ACAAGCTATATAGAAGCAAC+TGG - chr4.1:18795992-18796011 MS.gene36444:CDS 35.0%
ACAGTAAAAACTGTCACTGT+TGG + chr4.1:18795287-18795306 None:intergenic 35.0%
AGAAGGACTAAAATTGGCAA+GGG + chr4.1:18794552-18794571 None:intergenic 35.0%
ATCCATCTAAGAGTAAGAAG+TGG - chr4.1:18794834-18794853 MS.gene36444:CDS 35.0%
ATTCCTTAGCAATGAACCTA+AGG - chr4.1:18794715-18794734 MS.gene36444:CDS 35.0%
ATTCTAGACAGAAAAGCCAT+GGG - chr4.1:18795173-18795192 MS.gene36444:CDS 35.0%
CTATATAGAAGCAACTGGTT+GGG - chr4.1:18795997-18796016 MS.gene36444:CDS 35.0%
CTTATGTGTCTAAGTATCCA+AGG - chr4.1:18795915-18795934 MS.gene36444:CDS 35.0%
CTTGGATACTTAGACACATA+AGG + chr4.1:18795917-18795936 None:intergenic 35.0%
GAGTTTCTTGGAGCAAATTA+CGG + chr4.1:18794811-18794830 None:intergenic 35.0%
GGGAAGCTTATGTGAATTAT+AGG - chr4.1:18795936-18795955 MS.gene36444:CDS 35.0%
GTTCCATTTCTATGTGGAAA+AGG + chr4.1:18795797-18795816 None:intergenic 35.0%
GTTGAGAATGAAGGTTCATT+TGG + chr4.1:18794687-18794706 None:intergenic 35.0%
TAATTCACATAAGCTTCCCT+TGG + chr4.1:18795935-18795954 None:intergenic 35.0%
TACTTGTCTATATGGCAAGA+GGG - chr4.1:18795833-18795852 MS.gene36444:CDS 35.0%
TAGAAGGACTAAAATTGGCA+AGG + chr4.1:18794553-18794572 None:intergenic 35.0%
TATATAGAAGCAACTGGTTG+GGG - chr4.1:18795998-18796017 MS.gene36444:CDS 35.0%
TGGATCCTGAAAATGTGTTT+AGG - chr4.1:18796074-18796093 MS.gene36444:CDS 35.0%
! ATACCAGAAACTGGTATTGA+AGG - chr4.1:18795680-18795699 MS.gene36444:CDS 35.0%
! ATGATTTGGAATCCATATGG+TGG - chr4.1:18795740-18795759 MS.gene36444:CDS 35.0%
! GAAGCTTTGGTATACTTCTT+TGG - chr4.1:18795234-18795253 MS.gene36444:CDS 35.0%
! GTGAATATGAATTCGGGTTT+CGG + chr4.1:18794759-18794778 None:intergenic 35.0%
! TCATGCCTAAACACATTTTC+AGG + chr4.1:18796082-18796101 None:intergenic 35.0%
!! GATCTATTTTGGGCTATAAG+AGG - chr4.1:18795200-18795219 MS.gene36444:CDS 35.0%
!! GTAATTTGCTCCAAGAAACT+CGG - chr4.1:18794810-18794829 MS.gene36444:CDS 35.0%
!! TCAATACCAGTTTCTGGTAT+TGG + chr4.1:18795680-18795699 None:intergenic 35.0%
!! TCACTCATTTTTCCACCATA+TGG + chr4.1:18795755-18795774 None:intergenic 35.0%
ACACCTTAGGTTCATTGCTA+AGG + chr4.1:18794721-18794740 None:intergenic 40.0%
ACACTAAAACCAACACTGCT+TGG - chr4.1:18794949-18794968 MS.gene36444:CDS 40.0%
ACCACCTGAAGTTCTTCTTA+AGG - chr4.1:18795601-18795620 MS.gene36444:CDS 40.0%
ACGAAAGTCCTTCATAGTCA+TGG + chr4.1:18794863-18794882 None:intergenic 40.0%
AGTCCTTCAATACCAGTTTC+TGG + chr4.1:18795686-18795705 None:intergenic 40.0%
ATGTTGCAAAGCATGTAGAC+TGG - chr4.1:18795864-18795883 MS.gene36444:CDS 40.0%
CAAAGCATGTAGACTGGATT+AGG - chr4.1:18795870-18795889 MS.gene36444:CDS 40.0%
CACCACTTCTTACTCTTAGA+TGG + chr4.1:18794839-18794858 None:intergenic 40.0%
CACCTGAAGTTCTTCTTAAG+GGG - chr4.1:18795603-18795622 MS.gene36444:CDS 40.0%
CACTAAAACCAACACTGCTT+GGG - chr4.1:18794950-18794969 MS.gene36444:CDS 40.0%
CATCTAAGAGTAAGAAGTGG+TGG - chr4.1:18794837-18794856 MS.gene36444:CDS 40.0%
CATTCTAGACAGAAAAGCCA+TGG - chr4.1:18795172-18795191 MS.gene36444:CDS 40.0%
CATTGCTAAGGAATCAAGGA+TGG + chr4.1:18794709-18794728 None:intergenic 40.0%
CCACCTGAAGTTCTTCTTAA+GGG - chr4.1:18795602-18795621 MS.gene36444:CDS 40.0%
GCTATATAGAAGCAACTGGT+TGG - chr4.1:18795996-18796015 MS.gene36444:CDS 40.0%
GCTTTGGTATACTTCTTTGG+TGG - chr4.1:18795237-18795256 MS.gene36444:CDS 40.0%
GGTTCAGATAAAGACTAGAG+TGG - chr4.1:18796054-18796073 MS.gene36444:CDS 40.0%
GGTTCATTGCTAAGGAATCA+AGG + chr4.1:18794713-18794732 None:intergenic 40.0%
GTAAAAACTGTCACTGTTGG+TGG + chr4.1:18795284-18795303 None:intergenic 40.0%
GTACTTGTCTATATGGCAAG+AGG - chr4.1:18795832-18795851 MS.gene36444:CDS 40.0%
TACGAGAAAAGTTCGGTTCT+TGG - chr4.1:18795014-18795033 MS.gene36444:CDS 40.0%
TCAAGGATGGTTGAGAATGA+AGG + chr4.1:18794696-18794715 None:intergenic 40.0%
TTCCCCTTAAGAAGAACTTC+AGG + chr4.1:18795608-18795627 None:intergenic 40.0%
TTCCTGAATTGGGTTTGACA+AGG - chr4.1:18795513-18795532 MS.gene36444:CDS 40.0%
TTCCTTGTCAAACCCAATTC+AGG + chr4.1:18795518-18795537 None:intergenic 40.0%
! AAACTGGTATTGAAGGACTG+TGG - chr4.1:18795687-18795706 MS.gene36444:CDS 40.0%
! AGCAATGAACCTAAGGTGTT+TGG - chr4.1:18794722-18794741 MS.gene36444:CDS 40.0%
! AGCCCTTTTCCACATAGAAA+TGG - chr4.1:18795791-18795810 MS.gene36444:CDS 40.0%
! CATGGGAGAGGATCTATTTT+GGG - chr4.1:18795190-18795209 MS.gene36444:CDS 40.0%
! GAGGGTGTGAATATGAATTC+GGG + chr4.1:18794765-18794784 None:intergenic 40.0%
! GGAGGGTGTGAATATGAATT+CGG + chr4.1:18794766-18794785 None:intergenic 40.0%
! GTAATAGACTTCACCGATTG+TGG + chr4.1:18794988-18795007 None:intergenic 40.0%
! GTCGATTTAGTCAAACTTCG+CGG - chr4.1:18794915-18794934 MS.gene36444:CDS 40.0%
! TAGATGGATTCCGAGTTTCT+TGG + chr4.1:18794823-18794842 None:intergenic 40.0%
!! CTATTTTGGGCTATAAGAGG+TGG - chr4.1:18795203-18795222 MS.gene36444:CDS 40.0%
!! CTGAATTCAGGTTGAGACAT+TGG + chr4.1:18794629-18794648 None:intergenic 40.0%
AAATTACGGCTGCTTGGACA+TGG + chr4.1:18794797-18794816 None:intergenic 45.0%
AACACTGCTTGGGTTCAATC+CGG - chr4.1:18794960-18794979 MS.gene36444:CDS 45.0%
AAGCAACTGGTTGGGGTTAT+AGG - chr4.1:18796005-18796024 MS.gene36444:CDS 45.0%
AATTACGGCTGCTTGGACAT+GGG + chr4.1:18794796-18794815 None:intergenic 45.0%
ACTTCAGGTGGTGTAACACT+TGG + chr4.1:18795593-18795612 None:intergenic 45.0%
AGGGAACCAATACCAGAAAC+TGG - chr4.1:18795671-18795690 MS.gene36444:CDS 45.0%
CCAAAATAGATCCTCTCCCA+TGG + chr4.1:18795192-18795211 None:intergenic 45.0%
CCCTTAAGAAGAACTTCAGG+TGG + chr4.1:18795605-18795624 None:intergenic 45.0%
CTATGCACAAGCTTAGGTGT+CGG - chr4.1:18795050-18795069 MS.gene36444:CDS 45.0%
GCTCGAATCGTTGATGCAAA+TGG - chr4.1:18795146-18795165 MS.gene36444:CDS 45.0%
TGCTTGGACATGGGAATCTT+GGG + chr4.1:18794787-18794806 None:intergenic 45.0%
TTGTTTCCAACACTAGCAGC+TGG + chr4.1:18795410-18795429 None:intergenic 45.0%
! AATTCGGGTTTCGGTGTAGA+TGG + chr4.1:18794750-18794769 None:intergenic 45.0%
! CACATAACAGGAGGTGCATA+TGG - chr4.1:18795077-18795096 MS.gene36444:CDS 45.0%
! CCATGGGAGAGGATCTATTT+TGG - chr4.1:18795189-18795208 MS.gene36444:CDS 45.0%
! TAGATGGTGCCAAACACCTT+AGG + chr4.1:18794734-18794753 None:intergenic 45.0%
! TTTTGGGCTATAAGAGGTGG+TGG - chr4.1:18795206-18795225 MS.gene36444:CDS 45.0%
AAGCTTGTGCATAGACCTGC+AGG + chr4.1:18795044-18795063 None:intergenic 50.0%
AGACAGAAAAGCCATGGGAG+AGG - chr4.1:18795178-18795197 MS.gene36444:CDS 50.0%
AGCTTGTGCATAGACCTGCA+GGG + chr4.1:18795043-18795062 None:intergenic 50.0%
AGTGGTGGCCATGACTATGA+AGG - chr4.1:18794852-18794871 MS.gene36444:CDS 50.0%
ATCCAACCAGCTGCTAGTGT+TGG - chr4.1:18795401-18795420 MS.gene36444:CDS 50.0%
CTGCTTGGACATGGGAATCT+TGG + chr4.1:18794788-18794807 None:intergenic 50.0%
GCAGGTCTATGCACAAGCTT+AGG - chr4.1:18795044-18795063 MS.gene36444:CDS 50.0%
GGATTGAACCCAAGCAGTGT+TGG + chr4.1:18794961-18794980 None:intergenic 50.0%
GTATTGAAGGACTGTGGCAG+AGG - chr4.1:18795693-18795712 MS.gene36444:CDS 50.0%
TGGACATGGGAATCTTGGGA+GGG + chr4.1:18794783-18794802 None:intergenic 50.0%
TGGAGCAAATTACGGCTGCT+TGG + chr4.1:18794803-18794822 None:intergenic 50.0%
TTCCAACACTAGCAGCTGGT+TGG + chr4.1:18795406-18795425 None:intergenic 50.0%
TTGGACATGGGAATCTTGGG+AGG + chr4.1:18794784-18794803 None:intergenic 50.0%
! ACTGTCACTGTTGGTGGAAC+AGG + chr4.1:18795278-18795297 None:intergenic 50.0%
!! GTTCAATCCGGTGCCACAAT+CGG - chr4.1:18794972-18794991 MS.gene36444:CDS 50.0%
GTCGGTGGACACATAACAGG+AGG - chr4.1:18795068-18795087 MS.gene36444:CDS 55.0%
TCGGTTCTTGGTTACCCTGC+AGG - chr4.1:18795026-18795045 MS.gene36444:CDS 55.0%
! GACTTCACCGATTGTGGCAC+CGG + chr4.1:18794982-18795001 None:intergenic 55.0%
! TGGGCTATAAGAGGTGGTGG+AGG - chr4.1:18795209-18795228 MS.gene36444:CDS 55.0%
!! GCTATAAGAGGTGGTGGAGG+TGG - chr4.1:18795212-18795231 MS.gene36444:CDS 55.0%
!! GGTGTCGGTGGACACATAAC+AGG - chr4.1:18795065-18795084 MS.gene36444:CDS 55.0%
!! TGCACAAGCTTAGGTGTCGG+TGG - chr4.1:18795053-18795072 MS.gene36444:CDS 55.0%
!! GGTGGTGGAGGTGGAAGCTT+TGG - chr4.1:18795221-18795240 MS.gene36444:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 18794531 18796129 18794531 ID=MS.gene36444
chr4.1 mRNA 18794531 18796129 18794531 ID=MS.gene36444.t1;Parent=MS.gene36444
chr4.1 exon 18794531 18796129 18794531 ID=MS.gene36444.t1.exon1;Parent=MS.gene36444.t1
chr4.1 CDS 18794531 18796129 18794531 ID=cds.MS.gene36444.t1;Parent=MS.gene36444.t1
Gene Sequence

>MS.gene36444

ATGGTGTCACCAATCTTACCCTTGCCAATTTTAGTCCTTCTATTATCATCACTTTCATTAAAAGTTTCCTCTTTATTACTTCAAGACAGTTTTGTCCAATGTCTCAACCTGAATTCAGACAAAACATATCCATTTCATACAACAATTTACACTCCAAATGAACCTTCATTCTCAACCATCCTTGATTCCTTAGCAATGAACCTAAGGTGTTTGGCACCATCTACACCGAAACCCGAATTCATATTCACACCCTCCCAAGATTCCCATGTCCAAGCAGCCGTAATTTGCTCCAAGAAACTCGGAATCCATCTAAGAGTAAGAAGTGGTGGCCATGACTATGAAGGACTTTCGTATGTTTCCAAAATCGAAACACCTTTCATAGTTGTCGATTTAGTCAAACTTCGCGGCATAAGCATTGACACTAAAACCAACACTGCTTGGGTTCAATCCGGTGCCACAATCGGTGAAGTCTATTACAGAATATACGAGAAAAGTTCGGTTCTTGGTTACCCTGCAGGTCTATGCACAAGCTTAGGTGTCGGTGGACACATAACAGGAGGTGCATATGGAACATTGATGAGAAAATATGGTCTTGGTGTTGATAATGTCTTAGATGCTCGAATCGTTGATGCAAATGGAAACATTCTAGACAGAAAAGCCATGGGAGAGGATCTATTTTGGGCTATAAGAGGTGGTGGAGGTGGAAGCTTTGGTATACTTCTTTGGTGGAAGATAAAGCTTGTTCCTGTTCCACCAACAGTGACAGTTTTTACTGTCACTAAAACTTTAGAACAAGGTGCTACAAAAATTCTTCATAGATGGCAAGAAGTAGCACCTTTTATTGATGAAAATCTCTTTATTAGAGTCATCATCCAACCAGCTGCTAGTGTTGGAAACAAAACTCAAAGAACTATTACAACTTCTTATAATGCTGTTTTTCTTGGTGAAGCAAGAACATTACTTCAAGTCATGAAAACAAGTTTTCCTGAATTGGGTTTGACAAGGAAAGATTGTCAAGAAACTAGTTGGATCAAATCTGTTCTCTATATTGCTGGATATCCAAGTGTTACACCACCTGAAGTTCTTCTTAAGGGGAAACCAACATTTAAGAATTCTTTCAAAGCAAAATCAGATTTTGTGAGGGAACCAATACCAGAAACTGGTATTGAAGGACTGTGGCAGAGGCTGTTGAGTGAAGATAGTCCTTTGATGATTTGGAATCCATATGGTGGAAAAATGAGTGAATTTTCAGAATCAGATAGCCCTTTTCCACATAGAAATGGAACATTGTATAAAATTCAGTACTTGTCTATATGGCAAGAGGGTGACAAGAATGTTGCAAAGCATGTAGACTGGATTAGGAAGCTCTATAACTATATGACTCCTTATGTGTCTAAGTATCCAAGGGAAGCTTATGTGAATTATAGGGATCTTGATTTGGGAATTAACTCTAAGAATAGTACAAGCTATATAGAAGCAACTGGTTGGGGTTATAGGTATTTTAAGGGTAATTTTAACAAGTTGGTTCAGATAAAGACTAGAGTGGATCCTGAAAATGTGTTTAGGCATGAACAAAGTATTCCACCACTTCCAATATAA
Protein sequence

>MS.gene36444.t1

MVSPILPLPILVLLLSSLSLKVSSLLLQDSFVQCLNLNSDKTYPFHTTIYTPNEPSFSTILDSLAMNLRCLAPSTPKPEFIFTPSQDSHVQAAVICSKKLGIHLRVRSGGHDYEGLSYVSKIETPFIVVDLVKLRGISIDTKTNTAWVQSGATIGEVYYRIYEKSSVLGYPAGLCTSLGVGGHITGGAYGTLMRKYGLGVDNVLDARIVDANGNILDRKAMGEDLFWAIRGGGGGSFGILLWWKIKLVPVPPTVTVFTVTKTLEQGATKILHRWQEVAPFIDENLFIRVIIQPAASVGNKTQRTITTSYNAVFLGEARTLLQVMKTSFPELGLTRKDCQETSWIKSVLYIAGYPSVTPPEVLLKGKPTFKNSFKAKSDFVREPIPETGIEGLWQRLLSEDSPLMIWNPYGGKMSEFSESDSPFPHRNGTLYKIQYLSIWQEGDKNVAKHVDWIRKLYNYMTPYVSKYPREAYVNYRDLDLGINSKNSTSYIEATGWGYRYFKGNFNKLVQIKTRVDPENVFRHEQSIPPLPI