AlfalfaGEDB | MS.gene35104

M. sativa cultivar XinJiangDaYe / MS.gene35104

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363
PFAM: PF01565.26 PF08031.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35104.t1	XP_013457290.1	96.8	440	14	0	1	440	104	543	3.40E-251	877.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35104.t1	O64743	55.0	438	182	7	1	435	106	531	1.5e-141	504.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35104.t1	G8A1B3	96.8	440	14	0	1	440	104	543	2.5e-251	877.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049259	MS.gene35104	0.81934	1.22E-52	-1.69E-46
MS.gene051127	MS.gene35104	0.802435	5.62E-49	-1.69E-46
MS.gene058109	MS.gene35104	0.803257	3.80E-49	-1.69E-46
MS.gene058111	MS.gene35104	0.842625	2.31E-58	-1.69E-46
MS.gene058171	MS.gene35104	0.829822	4.15E-55	-1.69E-46
MS.gene058173	MS.gene35104	0.83464	2.67E-56	-1.69E-46
MS.gene058175	MS.gene35104	0.835116	2.02E-56	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene35104	MS.gene28723	PPI
MS.gene35104	MS.gene047977	PPI
MS.gene02146	MS.gene35104	PPI
MS.gene35104	MS.gene35102	PPI
MS.gene35104	MS.gene28742	PPI
MS.gene35104	MS.gene28726	PPI
MS.gene35104	MS.gene28717	PPI
MS.gene36421	MS.gene35104	PPI
MS.gene35104	MS.gene35106	PPI
MS.gene35104	MS.gene028353	PPI
MS.gene35104	MS.gene009481	PPI
MS.gene35104	MS.gene56282	PPI
MS.gene35104	MS.gene51643	PPI
MS.gene35104	MS.gene28727	PPI
MS.gene35104	MS.gene51646	PPI
MS.gene35104	MS.gene36444	PPI
MS.gene35104	MS.gene35114	PPI
MS.gene35104	MS.gene51644	PPI
MS.gene35104	MS.gene028354	PPI
MS.gene35104	MS.gene56279	PPI
MS.gene35104	MS.gene028347	PPI
MS.gene35104	MS.gene36438	PPI
MS.gene35104	MS.gene35103	PPI
MS.gene35104	MS.gene36437	PPI
MS.gene35104	MS.gene028357	PPI
MS.gene35104	MS.gene36439	PPI
MS.gene35104	MS.gene63532	PPI
MS.gene35104	MS.gene63535	PPI
MS.gene35104	MS.gene009479	PPI
MS.gene35104	MS.gene35105	PPI
MS.gene028369	MS.gene35104	PPI
MS.gene35104	MS.gene36435	PPI
MS.gene35104	MS.gene28724	PPI
MS.gene35104	MS.gene28725	PPI
MS.gene35104	MS.gene35083	PPI
MS.gene35104	MS.gene35113	PPI
MS.gene35104	MS.gene56278	PPI
MS.gene35104	MS.gene028346	PPI
MS.gene35104	MS.gene028352	PPI
MS.gene35105	MS.gene35104	PPI
MS.gene36438	MS.gene35104	PPI
MS.gene35104	MS.gene63533	PPI
MS.gene003357	MS.gene35104	PPI
MS.gene28724	MS.gene35104	PPI
MS.gene35104	MS.gene36445	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35104.t1	MTR_4g094488	96.818	440	14	0	1	440	104	543	0.0	889
MS.gene35104.t1	MTR_4g094495	83.636	440	72	0	1	440	107	546	0.0	751
MS.gene35104.t1	MTR_4g094478	81.062	433	80	1	1	433	104	534	0.0	723
MS.gene35104.t1	MTR_4g094492	79.684	443	83	3	1	440	104	542	0.0	712
MS.gene35104.t1	MTR_4g094480	79.318	440	89	1	1	440	104	541	0.0	711
MS.gene35104.t1	MTR_4g094418	73.684	437	108	2	1	433	1	434	0.0	668
MS.gene35104.t1	MTR_3g009820	59.722	432	165	3	1	432	98	520	0.0	526
MS.gene35104.t1	MTR_3g009880	60.185	432	163	3	1	432	96	518	0.0	525
MS.gene35104.t1	MTR_3g009760	59.815	433	163	4	1	432	98	520	0.0	525
MS.gene35104.t1	MTR_2g031390	56.092	435	180	6	1	432	101	527	7.18e-178	508
MS.gene35104.t1	MTR_2g031560	56.250	432	183	3	1	432	96	521	2.62e-176	505
MS.gene35104.t1	MTR_2g031420	59.954	432	163	6	1	432	104	525	4.93e-173	495
MS.gene35104.t1	MTR_2g031460	59.861	431	163	5	1	431	104	524	3.84e-171	491
MS.gene35104.t1	MTR_2g031590	56.221	434	186	3	1	433	101	531	6.85e-169	485
MS.gene35104.t1	MTR_4g094520	56.782	435	178	6	1	433	105	531	2.25e-166	479
MS.gene35104.t1	MTR_4g094518	57.471	435	174	6	1	432	102	528	2.79e-166	478
MS.gene35104.t1	MTR_4g094498	56.293	437	182	3	1	437	110	537	3.69e-166	479
MS.gene35104.t1	MTR_2g031490	54.943	435	187	4	1	432	108	536	7.02e-156	452
MS.gene35104.t1	MTR_2g031510	54.023	435	191	4	1	432	110	538	4.23e-154	447
MS.gene35104.t1	MTR_4g094515	55.149	437	190	3	1	437	723	1153	3.05e-149	454
MS.gene35104.t1	MTR_4g094515	53.318	437	194	5	1	434	111	540	7.87e-142	434
MS.gene35104.t1	MTR_4g057990	53.103	435	194	4	1	434	97	522	4.13e-149	434
MS.gene35104.t1	MTR_4g088355	52.392	439	202	4	1	438	105	537	7.30e-149	434
MS.gene35104.t1	MTR_6g017205	53.318	437	195	4	1	435	98	527	7.22e-148	432
MS.gene35104.t1	MTR_4g091150	53.456	434	195	5	1	432	110	538	7.96e-148	432
MS.gene35104.t1	MTR_4g091200	52.523	436	198	4	1	434	98	526	1.35e-146	428
MS.gene35104.t1	MTR_4g091170	49.545	440	197	5	1	439	132	547	1.45e-144	424
MS.gene35104.t1	MTR_4g091190	51.259	437	204	3	2	437	103	531	2.27e-144	422
MS.gene35104.t1	MTR_2g023590	48.970	437	214	3	1	436	40	468	2.04e-135	397
MS.gene35104.t1	MTR_1g076830	45.205	438	223	6	1	431	105	532	2.52e-117	354
MS.gene35104.t1	MTR_3g009850	58.667	225	89	3	209	432	5	226	6.21e-88	268
MS.gene35104.t1	MTR_2g031600	72.727	143	39	0	1	143	102	244	6.16e-62	206
MS.gene35104.t1	MTR_2g031600	52.532	158	72	2	276	433	245	399	3.55e-51	178
MS.gene35104.t1	MTR_2g084370	49.550	111	34	2	25	135	1	89	8.87e-33	119
MS.gene35104.t1	MTR_2g084405	60.000	80	32	0	25	104	1	80	2.20e-24	97.4
MS.gene35104.t1	MTR_8g062280	36.893	103	35	3	333	435	4	76	3.65e-12	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35104.t1	AT2G34790	54.795	438	183	7	1	435	106	531	2.94e-165	476
MS.gene35104.t1	AT5G44400	54.233	437	185	7	1	432	108	534	1.02e-163	472
MS.gene35104.t1	AT4G20820	56.019	432	175	5	1	432	108	524	1.91e-161	466
MS.gene35104.t1	AT1G30760	54.338	438	185	6	1	435	108	533	2.62e-161	466
MS.gene35104.t1	AT1G30760	54.338	438	185	6	1	435	126	551	3.48e-161	466
MS.gene35104.t1	AT5G44360	55.505	436	175	9	1	432	108	528	3.97e-160	462
MS.gene35104.t1	AT5G44360	55.505	436	175	9	1	432	124	544	6.02e-160	463
MS.gene35104.t1	AT5G44440	54.233	437	184	5	1	432	102	527	6.35e-160	462
MS.gene35104.t1	AT5G44440	54.233	437	184	5	1	432	172	597	7.98e-159	462
MS.gene35104.t1	AT4G20860	54.587	436	181	9	1	432	105	527	2.54e-158	458
MS.gene35104.t1	AT5G44390	52.727	440	191	9	1	433	110	539	4.11e-154	448
MS.gene35104.t1	AT5G44410	53.653	438	181	7	1	432	106	527	2.74e-152	443
MS.gene35104.t1	AT5G44380	55.046	436	183	6	1	432	111	537	2.93e-151	441
MS.gene35104.t1	AT5G44380	55.046	436	183	6	1	432	151	577	7.08e-151	441
MS.gene35104.t1	AT1G26410	53.349	433	191	7	1	432	125	547	3.59e-148	433
MS.gene35104.t1	AT1G30710	52.174	437	189	8	1	432	105	526	2.49e-147	430
MS.gene35104.t1	AT1G26390	53.472	432	194	4	1	432	101	525	3.64e-147	429
MS.gene35104.t1	AT1G26380	52.955	440	198	6	1	440	101	531	1.24e-146	428
MS.gene35104.t1	AT1G26420	52.887	433	193	7	1	432	101	523	3.49e-146	427
MS.gene35104.t1	AT1G11770	51.954	435	197	5	1	433	104	528	5.67e-146	427
MS.gene35104.t1	AT1G34575	51.247	441	196	8	1	437	102	527	4.08e-144	422
MS.gene35104.t1	AT4G20840	51.142	438	202	5	3	438	112	539	5.08e-144	422
MS.gene35104.t1	AT1G30730	51.270	433	201	5	1	432	100	523	1.50e-143	420
MS.gene35104.t1	AT1G30700	51.954	435	197	6	1	432	99	524	1.79e-142	417
MS.gene35104.t1	AT1G26400	51.606	436	200	6	1	435	101	526	2.50e-141	414
MS.gene35104.t1	AT1G30720	51.039	433	202	5	1	432	101	524	3.49e-138	407
MS.gene35104.t1	AT4G20800	50.922	434	201	6	1	432	100	523	4.19e-137	404
MS.gene35104.t1	AT4G20830	50.342	439	204	6	3	438	113	540	1.98e-134	397
MS.gene35104.t1	AT1G01980	50.564	443	202	7	2	437	105	537	4.75e-134	396
MS.gene35104.t1	AT4G20830	50.461	434	201	6	3	433	113	535	5.12e-133	395
MS.gene35104.t1	AT1G30740	50.000	440	200	7	1	433	101	527	4.08e-131	389
MS.gene35104.t1	AT1G30740	50.000	440	200	7	1	433	104	530	4.58e-131	389
MS.gene35104.t1	AT2G34810	47.126	435	223	4	1	432	107	537	2.23e-126	377

Find 90 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCTATAAGCATGCTAGTATT+TGG	0.193317	4.4:-19903801	MS.gene35104:CDS
AATCCTTCTAAACCAGTTTC+AGG	0.221499	4.4:+19904126	None:intergenic
GTTTCAAGTGGTTCGCCTTC+TGG	0.231675	4.4:+19904219	None:intergenic
TAGAAAACTTTATAGTTATA+TGG	0.249330	4.4:-19903911	MS.gene35104:CDS
CAATGGGTGAAGATTTGTTT+TGG	0.263104	4.4:-19904629	MS.gene35104:CDS
TTATTTCAATCCTTGTTTCT+AGG	0.269621	4.4:-19904357	MS.gene35104:CDS
CTAATGGTATTGTTTCCTTA+TGG	0.282122	4.4:-19904066	MS.gene35104:CDS
AAACTGGTTTAGAAGGATTA+TGG	0.294935	4.4:-19904122	MS.gene35104:CDS
CTATAAGCATGCTAGTATTT+GGG	0.298519	4.4:-19903800	MS.gene35104:CDS
CGCCTTCTGGAAACCGAAAA+AGG	0.314622	4.4:+19904232	None:intergenic
ATTCCTGAAACTGGTTTAGA+AGG	0.316827	4.4:-19904129	MS.gene35104:CDS
CACTTCAGTGGTGGTGGATA+TGG	0.317127	4.4:-19904741	MS.gene35104:CDS
TCTAAACCAGTTTCAGGAAT+AGG	0.319812	4.4:+19904132	None:intergenic
AAAATTCCTATTCCTGAAAC+TGG	0.323303	4.4:-19904138	MS.gene35104:CDS
AATTACAGAGACCTTGATAT+TGG	0.327857	4.4:-19903850	MS.gene35104:CDS
TCATTTCTGAAGAAGTTTAG+AGG	0.331220	4.4:+19903718	None:intergenic
ATTGGTGTGAATAACATTAA+TGG	0.338315	4.4:-19903832	MS.gene35104:CDS
ATTCCATTTCCACATAGATA+TGG	0.343229	4.4:-19904012	MS.gene35104:CDS
GGTGGTGGAGGAGCAAGTTT+TGG	0.349746	4.4:-19904597	MS.gene35104:CDS
GTAAACACTGTTACAGTTGA+TGG	0.351158	4.4:+19904537	None:intergenic
GGAACCTTGTTGCGTAAATA+TGG	0.364610	4.4:-19904720	MS.gene35104:CDS
TGGAAAAGTTGCACATCAAT+TGG	0.370174	4.4:-19903936	MS.gene35104:CDS
CTTGGTGACTTTGAAACAAA+AGG	0.372572	4.4:+19903886	None:intergenic
CAAGAACAACTTCAAAAGAT+TGG	0.382060	4.4:-19903764	MS.gene35104:CDS
GTTTCCTTATGGTGGCATAA+TGG	0.388858	4.4:-19904055	MS.gene35104:CDS
GAAGAAAAGTTTCCTGAACT+TGG	0.392423	4.4:-19904306	MS.gene35104:CDS
GTTCCATATCTATGTGGAAA+TGG	0.394166	4.4:+19904009	None:intergenic
GAAATTCTATTTGCGTCCCT+TGG	0.394677	4.4:+19903672	None:intergenic
AGATAACCTCTTACCCTTGA+TGG	0.394714	4.4:-19904328	MS.gene35104:CDS
TCTCTAACCAACCCAAGTTC+AGG	0.400856	4.4:+19904294	None:intergenic
GACAAAATCAGATTTCGCTT+TGG	0.411110	4.4:+19904161	None:intergenic
GTGAGCATCAATGATGTTAT+CGG	0.419983	4.4:+19904689	None:intergenic
AAAACTCTTGGTTTCCCTGC+AGG	0.420339	4.4:-19904792	MS.gene35104:CDS
TTTCTTCCATCAAGGGTAAG+AGG	0.424421	4.4:+19904322	None:intergenic
TTGGTGTGAATAACATTAAT+GGG	0.432181	4.4:-19903831	MS.gene35104:CDS
AAATCTGCTTGGGTTCAATC+TGG	0.443226	4.4:-19904858	MS.gene35104:CDS
AAAGCTAGTACTGTTGACTT+TGG	0.458454	4.4:+19904378	None:intergenic
AAGATTGTGTTGAAATGAGT+TGG	0.466692	4.4:-19904272	MS.gene35104:CDS
TGTCCTACTGTTGGTGTTGG+TGG	0.473390	4.4:-19904765	MS.gene35104:CDS
GTGAGATCAATGATGACAAA+AGG	0.482657	4.4:+19904915	None:intergenic
TGTTATTCACACCAATATCA+AGG	0.485733	4.4:+19903839	None:intergenic
TGTAGAAAACAAATCTGCTT+GGG	0.486176	4.4:-19904868	MS.gene35104:CDS
TGGGCTATTAGAGGTGGTGG+AGG	0.490480	4.4:-19904609	MS.gene35104:CDS
TGGTGCGGAAGAGGTACTAA+TGG	0.495510	4.4:-19904082	MS.gene35104:CDS
GTTTGTCCTACTGTTGGTGT+TGG	0.496241	4.4:-19904768	MS.gene35104:CDS
TAGCGGTGGCCACGACTTCG+AGG	0.497341	4.4:-19904961	MS.gene35104:CDS
TAATTAATATATGCAGCTCT+TGG	0.501793	4.4:+19903868	None:intergenic
AAAGTTTCCTGAACTTGGGT+TGG	0.502529	4.4:-19904301	MS.gene35104:CDS
TTATCCATTATGCCACCATA+AGG	0.506968	4.4:+19904051	None:intergenic
GCAGGTGTTTGTCCTACTGT+TGG	0.508229	4.4:-19904774	MS.gene35104:CDS
AAGAAAAGTTTCCTGAACTT+GGG	0.512048	4.4:-19904305	MS.gene35104:CDS
TGAAATGAGTTGGATTGAAT+CGG	0.514164	4.4:-19904262	MS.gene35104:CDS
ACAGTAGGACAAACACCTGC+AGG	0.517099	4.4:+19904777	None:intergenic
ATGGTATTGTTTCCTTATGG+TGG	0.522116	4.4:-19904063	MS.gene35104:CDS
TGGCCTATGTTTGATGAAGA+TGG	0.529049	4.4:-19904102	MS.gene35104:CDS
CTGTTGAGCAACGTTTCAAG+TGG	0.530743	4.4:+19904207	None:intergenic
GTTTCTTGACAGAGAAGCAA+TGG	0.534469	4.4:-19904646	MS.gene35104:CDS
ATGTAGAAAACAAATCTGCT+TGG	0.539282	4.4:-19904869	MS.gene35104:CDS
GTTTACTGTTCCAAGAACAT+TGG	0.547876	4.4:-19904520	MS.gene35104:CDS
CGTCCCTTGGACACATGAGA+AGG	0.549392	4.4:+19903685	None:intergenic
AAATTCAGTATGCAGTGCAT+TGG	0.556618	4.4:-19903978	MS.gene35104:CDS
TGATGAAGATGGTGCGGAAG+AGG	0.557116	4.4:-19904091	MS.gene35104:CDS
CAACAGAACACTAGCTGCAA+AGG	0.565270	4.4:-19904190	MS.gene35104:CDS
TTTCTTGACAGAGAAGCAAT+GGG	0.565816	4.4:-19904645	MS.gene35104:CDS
GGTGGACACTTCAGTGGTGG+TGG	0.566542	4.4:-19904747	MS.gene35104:CDS
TATACCTTCTCATGTGTCCA+AGG	0.569407	4.4:-19903689	MS.gene35104:CDS
TATAAGGTTCCATATCTATG+TGG	0.572757	4.4:+19904003	None:intergenic
GTTCAATCTGGTGCAACACT+TGG	0.575161	4.4:-19904846	MS.gene35104:CDS
CAACAAAGCTTGTTCACAAG+TGG	0.578289	4.4:-19904488	MS.gene35104:CDS
ACATAATTGATGTGAAAGGT+AGG	0.586594	4.4:-19904668	MS.gene35104:CDS
AAATTAATATTATCTTGCAA+AGG	0.587351	4.4:-19904431	MS.gene35104:CDS
AAGATAGACCCTCGAAGTCG+TGG	0.589802	4.4:+19904952	None:intergenic
TATAAGCATGCTAGTATTTG+GGG	0.597569	4.4:-19903799	MS.gene35104:CDS
AAGACCATATTTACGCAACA+AGG	0.597900	4.4:+19904716	None:intergenic
GCACCATCTTCATCAAACAT+AGG	0.602030	4.4:+19904099	None:intergenic
GGTGTTGGTGGACACTTCAG+TGG	0.602793	4.4:-19904753	MS.gene35104:CDS
ATCTACACTTCCTAGAAACA+AGG	0.610016	4.4:+19904347	None:intergenic
CAAATTCGAATTCGTAGCGG+TGG	0.611749	4.4:-19904975	MS.gene35104:CDS
GCATCAAGAAGGTGATGAGG+TGG	0.615161	4.4:-19903956	MS.gene35104:CDS
GTTGGTGGACACTTCAGTGG+TGG	0.622079	4.4:-19904750	MS.gene35104:CDS
GCAGTGCATTGGCATCAAGA+AGG	0.625900	4.4:-19903967	MS.gene35104:CDS
AGCGGTGGCCACGACTTCGA+GGG	0.628178	4.4:-19904960	MS.gene35104:CDS
GTTGCGTAAATATGGTCTTG+CGG	0.634179	4.4:-19904712	MS.gene35104:CDS
CAGTAGGACAAACACCTGCA+GGG	0.643650	4.4:+19904778	None:intergenic
ATACCTTCTCATGTGTCCAA+GGG	0.652262	4.4:-19903688	MS.gene35104:CDS
GCTCACATAATTGATGTGAA+AGG	0.660187	4.4:-19904672	MS.gene35104:CDS
TGTCCACCAACACCAACAGT+AGG	0.663218	4.4:+19904762	None:intergenic
TATGTTTGATGAAGATGGTG+CGG	0.701729	4.4:-19904097	MS.gene35104:CDS
TTGGCATCAAGAAGGTGATG+AGG	0.707673	4.4:-19903959	MS.gene35104:CDS
ATGCAAATTCGAATTCGTAG+CGG	0.744504	4.4:-19904978	MS.gene35104:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATTAATATTATCTTGCAA+AGG	-	chr4.4:19904225-19904244	MS.gene35104:CDS	15.0%
!!	TAGAAAACTTTATAGTTATA+TGG	-	chr4.4:19904745-19904764	MS.gene35104:CDS	15.0%
!!	GATTTGAATTCAAGTAAAAA+AGG	-	chr4.4:19904251-19904270	MS.gene35104:CDS	20.0%
!	ATTGGTGTGAATAACATTAA+TGG	-	chr4.4:19904824-19904843	MS.gene35104:CDS	25.0%
!	TAATTAATATATGCAGCTCT+TGG	+	chr4.4:19904791-19904810	None:intergenic	25.0%
!	TTGGTGTGAATAACATTAAT+GGG	-	chr4.4:19904825-19904844	MS.gene35104:CDS	25.0%
!!	TGCATACTGAATTTTGTATA+AGG	+	chr4.4:19904672-19904691	None:intergenic	25.0%
!!	TTATTTCAATCCTTGTTTCT+AGG	-	chr4.4:19904299-19904318	MS.gene35104:CDS	25.0%
	AAAATTCCTATTCCTGAAAC+TGG	-	chr4.4:19904518-19904537	MS.gene35104:CDS	30.0%
	AAGAAAAGTTTCCTGAACTT+GGG	-	chr4.4:19904351-19904370	MS.gene35104:CDS	30.0%
	AAGATTGTGTTGAAATGAGT+TGG	-	chr4.4:19904384-19904403	MS.gene35104:CDS	30.0%
	AATTACAGAGACCTTGATAT+TGG	-	chr4.4:19904806-19904825	MS.gene35104:CDS	30.0%
	ACATAATTGATGTGAAAGGT+AGG	-	chr4.4:19903988-19904007	MS.gene35104:CDS	30.0%
	ATGTAGAAAACAAATCTGCT+TGG	-	chr4.4:19903787-19903806	MS.gene35104:CDS	30.0%
	ATTCCATTTCCACATAGATA+TGG	-	chr4.4:19904644-19904663	MS.gene35104:CDS	30.0%
	CAAGAACAACTTCAAAAGAT+TGG	-	chr4.4:19904892-19904911	MS.gene35104:CDS	30.0%
	CTAATGGTATTGTTTCCTTA+TGG	-	chr4.4:19904590-19904609	MS.gene35104:CDS	30.0%
	CTATAAGCATGCTAGTATTT+GGG	-	chr4.4:19904856-19904875	MS.gene35104:CDS	30.0%
	TATAAGCATGCTAGTATTTG+GGG	-	chr4.4:19904857-19904876	MS.gene35104:CDS	30.0%
	TATAAGGTTCCATATCTATG+TGG	+	chr4.4:19904656-19904675	None:intergenic	30.0%
	TGTAGAAAACAAATCTGCTT+GGG	-	chr4.4:19903788-19903807	MS.gene35104:CDS	30.0%
	TGTTATTCACACCAATATCA+AGG	+	chr4.4:19904820-19904839	None:intergenic	30.0%
!	AAACTGGTTTAGAAGGATTA+TGG	-	chr4.4:19904534-19904553	MS.gene35104:CDS	30.0%
!	TCATTTCTGAAGAAGTTTAG+AGG	+	chr4.4:19904941-19904960	None:intergenic	30.0%
!	TGAAATGAGTTGGATTGAAT+CGG	-	chr4.4:19904394-19904413	MS.gene35104:CDS	30.0%
!!	AATCGGTTCTTTACCTTTTT+CGG	-	chr4.4:19904411-19904430	MS.gene35104:CDS	30.0%
!!	AATGGGTGAAGATTTGTTTT+GGG	-	chr4.4:19904028-19904047	MS.gene35104:CDS	30.0%
!!!	AACCAAGAGTTTTGCTTTTT+TGG	+	chr4.4:19903857-19903876	None:intergenic	30.0%
	AAATTCAGTATGCAGTGCAT+TGG	-	chr4.4:19904678-19904697	MS.gene35104:CDS	35.0%
	AAGACCATATTTACGCAACA+AGG	+	chr4.4:19903943-19903962	None:intergenic	35.0%
	AATCCTTCTAAACCAGTTTC+AGG	+	chr4.4:19904533-19904552	None:intergenic	35.0%
	AGCCAAAAAAGCAAAACTCT+TGG	-	chr4.4:19903852-19903871	MS.gene35104:CDS	35.0%
	ATCTACACTTCCTAGAAACA+AGG	+	chr4.4:19904312-19904331	None:intergenic	35.0%
	ATGCAAATTCGAATTCGTAG+CGG	-	chr4.4:19903678-19903697	MS.gene35104:CDS	35.0%
	ATGGTATTGTTTCCTTATGG+TGG	-	chr4.4:19904593-19904612	MS.gene35104:CDS	35.0%
	GAAGAAAAGTTTCCTGAACT+TGG	-	chr4.4:19904350-19904369	MS.gene35104:CDS	35.0%
	GACAAAATCAGATTTCGCTT+TGG	+	chr4.4:19904498-19904517	None:intergenic	35.0%
	GCTATAAGCATGCTAGTATT+TGG	-	chr4.4:19904855-19904874	MS.gene35104:CDS	35.0%
	GCTCACATAATTGATGTGAA+AGG	-	chr4.4:19903984-19904003	MS.gene35104:CDS	35.0%
	GTAAACACTGTTACAGTTGA+TGG	+	chr4.4:19904122-19904141	None:intergenic	35.0%
	GTGAGATCAATGATGACAAA+AGG	+	chr4.4:19903744-19903763	None:intergenic	35.0%
	GTGAGCATCAATGATGTTAT+CGG	+	chr4.4:19903970-19903989	None:intergenic	35.0%
	GTTCCATATCTATGTGGAAA+TGG	+	chr4.4:19904650-19904669	None:intergenic	35.0%
	GTTTACTGTTCCAAGAACAT+TGG	-	chr4.4:19904136-19904155	MS.gene35104:CDS	35.0%
	TATGTTTGATGAAGATGGTG+CGG	-	chr4.4:19904559-19904578	MS.gene35104:CDS	35.0%
	TCTAAACCAGTTTCAGGAAT+AGG	+	chr4.4:19904527-19904546	None:intergenic	35.0%
	TGGAAAAGTTGCACATCAAT+TGG	-	chr4.4:19904720-19904739	MS.gene35104:CDS	35.0%
	TTATCCATTATGCCACCATA+AGG	+	chr4.4:19904608-19904627	None:intergenic	35.0%
	TTTCTTGACAGAGAAGCAAT+GGG	-	chr4.4:19904011-19904030	MS.gene35104:CDS	35.0%
!	AGGAAACTTTTCTTCCATCA+AGG	+	chr4.4:19904345-19904364	None:intergenic	35.0%
!	ATTCCTGAAACTGGTTTAGA+AGG	-	chr4.4:19904527-19904546	MS.gene35104:CDS	35.0%
!	GCATTTTGTTCCAATGTTCT+TGG	+	chr4.4:19904149-19904168	None:intergenic	35.0%
!	GGAAACTTTTCTTCCATCAA+GGG	+	chr4.4:19904344-19904363	None:intergenic	35.0%
!!	AAAGCTAGTACTGTTGACTT+TGG	+	chr4.4:19904281-19904300	None:intergenic	35.0%
!!	CAATGGGTGAAGATTTGTTT+TGG	-	chr4.4:19904027-19904046	MS.gene35104:CDS	35.0%
!!	CTTGGTGACTTTGAAACAAA+AGG	+	chr4.4:19904773-19904792	None:intergenic	35.0%
!!!	GATTTGTTTTGGGCTATTAG+AGG	-	chr4.4:19904038-19904057	MS.gene35104:CDS	35.0%
!!!	GTTTTGGTGTCATAGTTTCA+TGG	-	chr4.4:19904075-19904094	MS.gene35104:CDS	35.0%
	AAAGTTTCCTGAACTTGGGT+TGG	-	chr4.4:19904355-19904374	MS.gene35104:CDS	40.0%
	AAATCTGCTTGGGTTCAATC+TGG	-	chr4.4:19903798-19903817	MS.gene35104:CDS	40.0%
	AGATAACCTCTTACCCTTGA+TGG	-	chr4.4:19904328-19904347	MS.gene35104:CDS	40.0%
	ATACCTTCTCATGTGTCCAA+GGG	-	chr4.4:19904968-19904987	MS.gene35104:CDS	40.0%
	GCACCATCTTCATCAAACAT+AGG	+	chr4.4:19904560-19904579	None:intergenic	40.0%
	GGAACCTTGTTGCGTAAATA+TGG	-	chr4.4:19903936-19903955	MS.gene35104:CDS	40.0%
	GTTTCCTTATGGTGGCATAA+TGG	-	chr4.4:19904601-19904620	MS.gene35104:CDS	40.0%
	GTTTCTTGACAGAGAAGCAA+TGG	-	chr4.4:19904010-19904029	MS.gene35104:CDS	40.0%
	TATACCTTCTCATGTGTCCA+AGG	-	chr4.4:19904967-19904986	MS.gene35104:CDS	40.0%
	TGGCCTATGTTTGATGAAGA+TGG	-	chr4.4:19904554-19904573	MS.gene35104:CDS	40.0%
	TTTCTTCCATCAAGGGTAAG+AGG	+	chr4.4:19904337-19904356	None:intergenic	40.0%
!	CAACAAAGCTTGTTCACAAG+TGG	-	chr4.4:19904168-19904187	MS.gene35104:CDS	40.0%
!	GTTGCGTAAATATGGTCTTG+CGG	-	chr4.4:19903944-19903963	MS.gene35104:CDS	40.0%
!!!	TACCTTTTTCGGTTTCCAGA+AGG	-	chr4.4:19904422-19904441	MS.gene35104:CDS	40.0%
!!!	TTGTTTTGGGCTATTAGAGG+TGG	-	chr4.4:19904041-19904060	MS.gene35104:CDS	40.0%
	AAAACTCTTGGTTTCCCTGC+AGG	-	chr4.4:19903864-19903883	MS.gene35104:CDS	45.0%
	CAAATTCGAATTCGTAGCGG+TGG	-	chr4.4:19903681-19903700	MS.gene35104:CDS	45.0%
	CAACAGAACACTAGCTGCAA+AGG	-	chr4.4:19904466-19904485	MS.gene35104:CDS	45.0%
	CTGTTGAGCAACGTTTCAAG+TGG	+	chr4.4:19904452-19904471	None:intergenic	45.0%
	GTTCAATCTGGTGCAACACT+TGG	-	chr4.4:19903810-19903829	MS.gene35104:CDS	45.0%
	GTTTGTCCTACTGTTGGTGT+TGG	-	chr4.4:19903888-19903907	MS.gene35104:CDS	45.0%
	TCTCTAACCAACCCAAGTTC+AGG	+	chr4.4:19904365-19904384	None:intergenic	45.0%
	TTGGCATCAAGAAGGTGATG+AGG	-	chr4.4:19904697-19904716	MS.gene35104:CDS	45.0%
!	TTTTGGGCTATTAGAGGTGG+TGG	-	chr4.4:19904044-19904063	MS.gene35104:CDS	45.0%
	AAGATAGACCCTCGAAGTCG+TGG	+	chr4.4:19903707-19903726	None:intergenic	50.0%
	ACAGTAGGACAAACACCTGC+AGG	+	chr4.4:19903882-19903901	None:intergenic	50.0%
	CAGTAGGACAAACACCTGCA+GGG	+	chr4.4:19903881-19903900	None:intergenic	50.0%
	GCAGGTGTTTGTCCTACTGT+TGG	-	chr4.4:19903882-19903901	MS.gene35104:CDS	50.0%
	GCATCAAGAAGGTGATGAGG+TGG	-	chr4.4:19904700-19904719	MS.gene35104:CDS	50.0%
	TGATGAAGATGGTGCGGAAG+AGG	-	chr4.4:19904565-19904584	MS.gene35104:CDS	50.0%
	TGTCCACCAACACCAACAGT+AGG	+	chr4.4:19903897-19903916	None:intergenic	50.0%
!	CGCCTTCTGGAAACCGAAAA+AGG	+	chr4.4:19904427-19904446	None:intergenic	50.0%
!	GCAGTGCATTGGCATCAAGA+AGG	-	chr4.4:19904689-19904708	MS.gene35104:CDS	50.0%
!	GTTTCAAGTGGTTCGCCTTC+TGG	+	chr4.4:19904440-19904459	None:intergenic	50.0%
!!	CACTTCAGTGGTGGTGGATA+TGG	-	chr4.4:19903915-19903934	MS.gene35104:CDS	50.0%
!!	TGGTGCGGAAGAGGTACTAA+TGG	-	chr4.4:19904574-19904593	MS.gene35104:CDS	50.0%
!!	TGTCCTACTGTTGGTGTTGG+TGG	-	chr4.4:19903891-19903910	MS.gene35104:CDS	50.0%
	CGTCCCTTGGACACATGAGA+AGG	+	chr4.4:19904974-19904993	None:intergenic	55.0%
!	GTTGGTGGACACTTCAGTGG+TGG	-	chr4.4:19903906-19903925	MS.gene35104:CDS	55.0%
!	TGGGCTATTAGAGGTGGTGG+AGG	-	chr4.4:19904047-19904066	MS.gene35104:CDS	55.0%
!!	GGTGTTGGTGGACACTTCAG+TGG	-	chr4.4:19903903-19903922	MS.gene35104:CDS	55.0%
!!!	GGTGGTGGAGGAGCAAGTTT+TGG	-	chr4.4:19904059-19904078	MS.gene35104:CDS	55.0%
	GGTGGACACTTCAGTGGTGG+TGG	-	chr4.4:19903909-19903928	MS.gene35104:CDS	60.0%
	AGCGGTGGCCACGACTTCGA+GGG	-	chr4.4:19903696-19903715	MS.gene35104:CDS	65.0%
	TAGCGGTGGCCACGACTTCG+AGG	-	chr4.4:19903695-19903714	MS.gene35104:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	19903678	19905000	19903678	ID=MS.gene35104
chr4.4	mRNA	19903678	19905000	19903678	ID=MS.gene35104.t1;Parent=MS.gene35104
chr4.4	exon	19903678	19905000	19903678	ID=MS.gene35104.t1.exon1;Parent=MS.gene35104.t1
chr4.4	CDS	19903678	19905000	19903678	ID=cds.MS.gene35104.t1;Parent=MS.gene35104.t1

Gene Sequence

>MS.gene35104

ATGCAAATTCGAATTCGTAGCGGTGGCCACGACTTCGAGGGTCTATCTTTTGTTTCACATGTTCCTTTTGTCATCATTGATCTCACAAACTTTAGAGAAATTGATGTAGATGTAGAAAACAAATCTGCTTGGGTTCAATCTGGTGCAACACTTGGTGAACTTTACTACAAAATTAGCCAAAAAAGCAAAACTCTTGGTTTCCCTGCAGGTGTTTGTCCTACTGTTGGTGTTGGTGGACACTTCAGTGGTGGTGGATATGGAACCTTGTTGCGTAAATATGGTCTTGCGGCCGATAACATCATTGATGCTCACATAATTGATGTGAAAGGTAGGTTTCTTGACAGAGAAGCAATGGGTGAAGATTTGTTTTGGGCTATTAGAGGTGGTGGAGGAGCAAGTTTTGGTGTCATAGTTTCATGGAAGATTAAACTTGTTCAAGTTCCATCAACTGTAACAGTGTTTACTGTTCCAAGAACATTGGAACAAAATGCAACAAAGCTTGTTCACAAGTGGCAGTATGTAGCACATAAACTTGATGAAAACTTAGAAATTAATATTATCTTGCAAAGGCTAGATTTGAATTCAAGTAAAAAAGGTGAGCCAAAGTCAACAGTACTAGCTTTATTTCAATCCTTGTTTCTAGGAAGTGTAGATAACCTCTTACCCTTGATGGAAGAAAAGTTTCCTGAACTTGGGTTGGTTAGAGAAGATTGTGTTGAAATGAGTTGGATTGAATCGGTTCTTTACCTTTTTCGGTTTCCAGAAGGCGAACCACTTGAAACGTTGCTCAACAGAACACTAGCTGCAAAGGATAATTCCAAAGCGAAATCTGATTTTGTCAAAATTCCTATTCCTGAAACTGGTTTAGAAGGATTATGGCCTATGTTTGATGAAGATGGTGCGGAAGAGGTACTAATGGTATTGTTTCCTTATGGTGGCATAATGGATAAGATTTCAGAATCTGAAATTCCATTTCCACATAGATATGGAACCTTATACAAAATTCAGTATGCAGTGCATTGGCATCAAGAAGGTGATGAGGTGGAAAAGTTGCACATCAATTGGATTAGAAAACTTTATAGTTATATGGAACCTTTTGTTTCAAAGTCACCAAGAGCTGCATATATTAATTACAGAGACCTTGATATTGGTGTGAATAACATTAATGGGTACACAAGCTATAAGCATGCTAGTATTTGGGGTGTTAAGTACTTCAAGAACAACTTCAAAAGATTGGCAAAAGTGAAGACAAAAGTTGATCCTCTAAACTTCTTCAGAAATGAACAGAGTATACCTTCTCATGTGTCCAAGGGACGCAAATAG

Protein sequence

>MS.gene35104.t1

MQIRIRSGGHDFEGLSFVSHVPFVIIDLTNFREIDVDVENKSAWVQSGATLGELYYKISQKSKTLGFPAGVCPTVGVGGHFSGGGYGTLLRKYGLAADNIIDAHIIDVKGRFLDREAMGEDLFWAIRGGGGASFGVIVSWKIKLVQVPSTVTVFTVPRTLEQNATKLVHKWQYVAHKLDENLEINIILQRLDLNSSKKGEPKSTVLALFQSLFLGSVDNLLPLMEEKFPELGLVREDCVEMSWIESVLYLFRFPEGEPLETLLNRTLAAKDNSKAKSDFVKIPIPETGLEGLWPMFDEDGAEEVLMVLFPYGGIMDKISESEIPFPHRYGTLYKIQYAVHWHQEGDEVEKLHINWIRKLYSYMEPFVSKSPRAAYINYRDLDIGVNNINGYTSYKHASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSHVSKGRK