AlfalfaGEDB | MS.gene36439

M. sativa cultivar XinJiangDaYe / MS.gene36439

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363
PFAM: PF01565.26 PF08031.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36439.t1	XP_013457292.1	95.2	546	24	1	1	544	1	546	2.00E-301	1044.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36439.t1	A6P6W1	49.6	548	267	5	2	543	1	545	2.1e-153	543.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36439.t1	A0A072UQJ9	95.2	546	24	1	1	544	1	546	1.5e-301	1044.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050381	MS.gene36439	0.814422	1.55E-51	-1.69E-46
MS.gene050883	MS.gene36439	0.856064	4.14E-62	-1.69E-46
MS.gene051127	MS.gene36439	0.821446	4.02E-53	-1.69E-46
MS.gene053420	MS.gene36439	0.801284	9.68E-49	-1.69E-46
MS.gene053826	MS.gene36439	0.802055	6.73E-49	-1.69E-46
MS.gene055124	MS.gene36439	0.800142	1.66E-48	-1.69E-46
MS.gene056310	MS.gene36439	0.832102	1.14E-55	-1.69E-46
MS.gene056311	MS.gene36439	0.825294	5.07E-54	-1.69E-46
MS.gene058099	MS.gene36439	0.800277	1.55E-48	-1.69E-46
MS.gene058109	MS.gene36439	0.805409	1.35E-49	-1.69E-46
MS.gene058111	MS.gene36439	0.801675	8.05E-49	-1.69E-46
MS.gene058493	MS.gene36439	0.809506	1.83E-50	-1.69E-46
MS.gene058628	MS.gene36439	0.8022	6.28E-49	-1.69E-46
MS.gene058630	MS.gene36439	0.810292	1.24E-50	-1.69E-46
MS.gene059045	MS.gene36439	0.80386	2.85E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene28726	MS.gene36439	PPI
MS.gene28723	MS.gene36439	PPI
MS.gene35114	MS.gene36439	PPI
MS.gene36439	MS.gene56279	PPI
MS.gene028352	MS.gene36439	PPI
MS.gene36439	MS.gene35102	PPI
MS.gene63532	MS.gene36439	PPI
MS.gene36439	MS.gene28717	PPI
MS.gene36439	MS.gene35106	PPI
MS.gene36445	MS.gene36439	PPI
MS.gene36439	MS.gene028353	PPI
MS.gene36439	MS.gene51643	PPI
MS.gene36439	MS.gene51646	PPI
MS.gene009479	MS.gene36439	PPI
MS.gene36439	MS.gene36444	PPI
MS.gene36439	MS.gene028354	PPI
MS.gene028369	MS.gene36439	PPI
MS.gene35083	MS.gene36439	PPI
MS.gene36439	MS.gene35103	PPI
MS.gene36439	MS.gene36437	PPI
MS.gene36439	MS.gene028357	PPI
MS.gene36439	MS.gene56278	PPI
MS.gene36439	MS.gene028346	PPI
MS.gene36439	MS.gene63535	PPI
MS.gene28727	MS.gene36439	PPI
MS.gene35104	MS.gene36439	PPI
MS.gene36439	MS.gene36435	PPI
MS.gene35105	MS.gene36439	PPI
MS.gene36438	MS.gene36439	PPI
MS.gene36439	MS.gene28725	PPI
MS.gene003357	MS.gene36439	PPI
MS.gene28724	MS.gene36439	PPI
MS.gene51644	MS.gene36439	PPI
MS.gene028347	MS.gene36439	PPI
MS.gene02146	MS.gene36439	PPI
MS.gene36439	MS.gene28742	PPI
MS.gene63533	MS.gene36439	PPI
MS.gene35113	MS.gene36439	PPI
MS.gene36421	MS.gene36439	PPI
MS.gene36439	MS.gene56282	PPI
MS.gene009481	MS.gene36439	PPI
MS.gene36439	MS.gene047977	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36439.t1	MTR_4g094495	95.238	546	24	1	1	544	1	546	0.0	1038
MS.gene36439.t1	MTR_4g094488	82.353	544	95	1	1	544	1	543	0.0	909
MS.gene36439.t1	MTR_4g094492	80.256	547	100	4	1	544	1	542	0.0	875
MS.gene36439.t1	MTR_4g094478	79.516	537	107	2	1	537	1	534	0.0	872
MS.gene36439.t1	MTR_4g094480	79.228	544	110	2	1	544	1	541	0.0	868
MS.gene36439.t1	MTR_4g094418	71.625	437	117	2	105	537	1	434	0.0	664
MS.gene36439.t1	MTR_2g031560	53.585	530	234	5	8	536	3	521	0.0	585
MS.gene36439.t1	MTR_3g009880	55.703	526	221	6	12	536	4	518	0.0	570
MS.gene36439.t1	MTR_2g031390	52.336	535	239	7	5	536	6	527	0.0	570
MS.gene36439.t1	MTR_3g009760	54.034	533	229	6	6	536	2	520	0.0	565
MS.gene36439.t1	MTR_3g009820	53.659	533	231	6	6	536	2	520	0.0	563
MS.gene36439.t1	MTR_2g031590	52.820	532	246	4	8	537	3	531	0.0	563
MS.gene36439.t1	MTR_2g031460	57.822	505	203	5	31	535	30	524	0.0	560
MS.gene36439.t1	MTR_2g031420	55.535	533	224	7	6	536	4	525	0.0	559
MS.gene36439.t1	MTR_4g094498	55.976	502	212	3	36	537	41	533	0.0	550
MS.gene36439.t1	MTR_4g094520	51.326	528	247	6	12	537	12	531	0.0	531
MS.gene36439.t1	MTR_4g094518	54.331	508	221	6	32	536	29	528	0.0	530
MS.gene36439.t1	MTR_4g091150	51.763	539	243	6	8	536	7	538	1.47e-179	516
MS.gene36439.t1	MTR_4g057990	50.556	540	246	8	2	538	1	522	1.13e-176	508
MS.gene36439.t1	MTR_6g017205	50.755	530	247	6	12	539	10	527	5.42e-176	508
MS.gene36439.t1	MTR_4g091200	50.093	535	247	7	7	538	9	526	6.64e-176	507
MS.gene36439.t1	MTR_2g031490	50.281	533	255	5	7	536	11	536	7.85e-176	507
MS.gene36439.t1	MTR_4g094515	51.316	532	252	4	7	537	624	1149	3.97e-175	525
MS.gene36439.t1	MTR_4g094515	51.866	509	235	5	33	538	39	540	1.53e-168	508
MS.gene36439.t1	MTR_4g088355	51.064	517	237	7	33	543	32	538	4.15e-174	503
MS.gene36439.t1	MTR_4g091190	48.593	533	264	4	12	543	10	533	1.11e-173	501
MS.gene36439.t1	MTR_2g031510	51.779	506	234	5	34	536	40	538	3.23e-172	498
MS.gene36439.t1	MTR_4g091170	48.712	466	214	5	74	538	101	542	2.23e-156	459
MS.gene36439.t1	MTR_2g023590	49.787	470	227	3	69	537	4	465	1.59e-154	450
MS.gene36439.t1	MTR_1g076830	45.436	482	252	5	58	535	58	532	1.11e-132	397
MS.gene36439.t1	MTR_2g031600	59.917	242	96	1	7	247	3	244	3.38e-90	283
MS.gene36439.t1	MTR_2g031600	53.797	158	70	2	380	537	245	399	1.01e-52	184
MS.gene36439.t1	MTR_3g009850	60.889	225	84	3	313	536	5	226	2.12e-87	270
MS.gene36439.t1	MTR_2g084370	50.450	111	33	2	129	239	1	89	1.83e-32	120
MS.gene36439.t1	MTR_2g084405	58.750	80	33	0	129	208	1	80	1.35e-22	93.2
MS.gene36439.t1	MTR_8g062280	34.951	103	37	3	437	539	4	76	2.93e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36439.t1	AT5G44440	51.017	541	245	8	2	536	1	527	0.0	528
MS.gene36439.t1	AT5G44440	50.647	541	247	7	2	536	71	597	0.0	527
MS.gene36439.t1	AT5G44400	50.657	533	246	9	11	536	12	534	0.0	523
MS.gene36439.t1	AT4G20820	49.081	544	256	7	2	540	1	528	1.93e-179	516
MS.gene36439.t1	AT5G44390	47.794	544	265	10	3	537	6	539	4.84e-175	505
MS.gene36439.t1	AT2G34790	47.575	536	258	9	8	539	15	531	2.84e-173	500
MS.gene36439.t1	AT5G44360	52.344	512	223	11	32	536	31	528	6.21e-173	499
MS.gene36439.t1	AT5G44360	52.539	512	222	11	32	536	47	544	8.44e-173	499
MS.gene36439.t1	AT1G30760	49.611	514	240	8	32	539	33	533	6.88e-172	497
MS.gene36439.t1	AT1G30760	49.611	514	240	8	32	539	51	551	7.06e-172	498
MS.gene36439.t1	AT5G44410	49.722	539	244	10	5	536	9	527	2.21e-170	493
MS.gene36439.t1	AT1G26420	47.940	534	258	11	8	536	5	523	3.58e-167	484
MS.gene36439.t1	AT1G30730	47.826	529	265	6	10	536	4	523	1.38e-166	483
MS.gene36439.t1	AT4G20860	50.570	526	232	12	22	536	19	527	3.67e-166	482
MS.gene36439.t1	AT5G44380	49.348	537	255	9	8	536	10	537	4.03e-166	483
MS.gene36439.t1	AT1G34575	47.778	540	262	8	4	539	2	525	6.38e-166	481
MS.gene36439.t1	AT1G30700	49.341	531	256	7	9	536	4	524	7.35e-166	481
MS.gene36439.t1	AT5G44380	49.348	537	255	9	8	536	50	577	8.35e-166	483
MS.gene36439.t1	AT1G30710	47.948	536	252	9	8	536	11	526	5.05e-165	479
MS.gene36439.t1	AT1G26410	49.603	504	244	8	34	536	53	547	3.27e-163	475
MS.gene36439.t1	AT1G26380	48.502	534	249	10	11	536	8	523	3.86e-163	474
MS.gene36439.t1	AT1G26390	49.307	505	248	5	33	536	28	525	1.18e-160	468
MS.gene36439.t1	AT1G26400	46.691	544	262	11	6	540	3	527	2.29e-160	467
MS.gene36439.t1	AT4G20840	47.573	515	253	8	33	542	37	539	2.54e-158	462
MS.gene36439.t1	AT1G11770	46.642	536	267	8	11	537	3	528	2.22e-157	460
MS.gene36439.t1	AT1G30720	49.307	505	245	6	34	536	29	524	5.83e-157	459
MS.gene36439.t1	AT4G20800	48.119	505	252	5	33	536	28	523	2.53e-156	457
MS.gene36439.t1	AT1G01980	47.563	513	251	8	33	537	31	533	1.04e-149	441
MS.gene36439.t1	AT4G20830	47.151	509	256	7	32	537	37	535	3.09e-149	439
MS.gene36439.t1	AT4G20830	47.151	509	256	7	32	537	37	535	1.07e-148	439
MS.gene36439.t1	AT2G34810	45.669	508	268	4	33	536	34	537	5.87e-145	428
MS.gene36439.t1	AT1G30740	46.269	536	266	11	10	537	6	527	1.36e-144	427
MS.gene36439.t1	AT1G30740	46.455	536	265	11	10	537	9	530	1.53e-144	427

Find 102 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGATTATGGTTGCTTGAATA+TGG	0.170155	4.1:+18847875	None:intergenic
GCTATAAGCAAGCTAGTATT+TGG	0.193317	4.1:-18846658	MS.gene36439:CDS
ATGCCTTCTAATCCAGTTTC+AGG	0.203252	4.1:+18846983	None:intergenic
AACTATAGAGATCTTGATAT+TGG	0.231989	4.1:-18846707	MS.gene36439:CDS
CCATATCATCATTGCATCTT+TGG	0.239092	4.1:+18846934	None:intergenic
TTATTTCAAGCTTTGTTTCT+TGG	0.263131	4.1:-18847214	MS.gene36439:CDS
GGTGGTGGAGGAGCAAGTTT+TGG	0.286201	4.1:-18847454	MS.gene36439:CDS
TCTAATCCAGTTTCAGGAAT+TGG	0.286688	4.1:+18846989	None:intergenic
ACTTCAGTTGGAGAACCTTT+TGG	0.298361	4.1:+18847076	None:intergenic
AGAATTCCAATTCCTGAAAC+TGG	0.301096	4.1:-18846995	MS.gene36439:CDS
CAATGGGTGAGGATTTGTTT+TGG	0.303294	4.1:-18847486	MS.gene36439:CDS
ACTATAGAGATCTTGATATT+GGG	0.314135	4.1:-18846706	MS.gene36439:CDS
GTGACAATTACAAGAGGTTT+TGG	0.315638	4.1:+18847913	None:intergenic
CACTTCAGTGGTGGTGGATA+TGG	0.317127	4.1:-18847598	MS.gene36439:CDS
GAACCATCTTCATCAAATAA+AGG	0.318041	4.1:+18846956	None:intergenic
CCAAAGATGCAATGATGATA+TGG	0.328286	4.1:-18846934	MS.gene36439:CDS
TAGAAAACTGTATAGTTATA+TGG	0.329156	4.1:-18846768	MS.gene36439:CDS
TCATTTCTGAAGAAGTTTAG+AGG	0.331220	4.1:+18846575	None:intergenic
ACAGTAGGACAAACACTTGC+AGG	0.361034	4.1:+18847634	None:intergenic
TTGAGTTATGTGAATAACTA+TGG	0.361143	4.1:+18848034	None:intergenic
GGAACCTTGTTGCGTAAATA+TGG	0.364610	4.1:-18847577	MS.gene36439:CDS
TATTGATGTGTAAGAGGAAT+TGG	0.365680	4.1:+18847981	None:intergenic
CTATAAGCAAGCTAGTATTT+GGG	0.368691	4.1:-18846657	MS.gene36439:CDS
AATCTGTAGGCCATGGTATT+GGG	0.371585	4.1:+18847849	None:intergenic
CTTGGTGACTTTGAAACAAA+AGG	0.372572	4.1:+18846743	None:intergenic
TGATTCAATACTCGGTTCAT+TGG	0.373369	4.1:-18846835	MS.gene36439:CDS
GTTTCCATATGGTGGCAAAA+TGG	0.373437	4.1:-18846912	MS.gene36439:CDS
ATTCCTGAAACTGGATTAGA+AGG	0.376708	4.1:-18846986	MS.gene36439:CDS
GAATCTGTAGGCCATGGTAT+TGG	0.381926	4.1:+18847848	None:intergenic
TTTCCACTTCTATGTGGAAA+TGG	0.387520	4.1:+18846866	None:intergenic
ATGGTATTGGGAACAGATTA+TGG	0.392865	4.1:+18847861	None:intergenic
GTAAACACAGTAACAATTGA+TGG	0.397213	4.1:+18847394	None:intergenic
TCATTTACCTCTTCAGCAAT+TGG	0.403207	4.1:-18848096	MS.gene36439:CDS
AAGCGGCGGCCACGACTTTG+AGG	0.408872	4.1:-18847818	MS.gene36439:CDS
CTGTTAAGCAACACTTCAGT+TGG	0.416351	4.1:+18847064	None:intergenic
CAAGAGAAGTTTCCTGAGCT+TGG	0.427109	4.1:-18847163	MS.gene36439:CDS
ATGAGATCAATGACGACAAA+TGG	0.430921	4.1:+18847772	None:intergenic
TGGGCTATTAGGGGTGGTGG+AGG	0.435638	4.1:-18847466	MS.gene36439:CDS
GATTATGGTTGCTTGAATAT+GGG	0.436969	4.1:+18847876	None:intergenic
GAAGTTTCCTGAGCTTGGTT+TGG	0.437875	4.1:-18847158	MS.gene36439:CDS
CTTATTCATGATTCAATACT+CGG	0.438411	4.1:-18846843	MS.gene36439:CDS
AATATTGTATTGAAATGAGT+TGG	0.439258	4.1:-18847129	MS.gene36439:CDS
TTTCAAGCTTTGTTTCTTGG+AGG	0.440275	4.1:-18847211	MS.gene36439:CDS
TGGCCTTTATTTGATGAAGA+TGG	0.441205	4.1:-18846959	MS.gene36439:CDS
TATACCTTCTCATGTGTTCA+AGG	0.466922	4.1:-18846546	MS.gene36439:CDS
GCTTGAAATAAAACTAGTAC+TGG	0.469012	4.1:+18847226	None:intergenic
ACTTCAAGAATAACTTCAAA+AGG	0.469443	4.1:-18846625	MS.gene36439:CDS
TTGGAGTATTGATGTGTAAG+AGG	0.474833	4.1:+18847975	None:intergenic
CAAGAATAACTTCAAAAGGT+TGG	0.477785	4.1:-18846621	MS.gene36439:CDS
GTGAGCATCAATGATGTTAT+CGG	0.478746	4.1:+18847546	None:intergenic
AAAACTGCATGGGTTCAATC+TGG	0.487082	4.1:-18847715	MS.gene36439:CDS
TGTGTAAGAGGAATTGGCTT+TGG	0.503548	4.1:+18847987	None:intergenic
AGTAGTACCAATTGCTGAAG+AGG	0.507421	4.1:+18848089	None:intergenic
AAACTGGATTAGAAGGCATA+TGG	0.508202	4.1:-18846979	MS.gene36439:CDS
GATGAATATTGTCTGGCAAA+GGG	0.514394	4.1:-18847287	MS.gene36439:CDS
ATATAGAGATGAATATTGTC+TGG	0.517958	4.1:-18847294	MS.gene36439:CDS
ATTCCATTTCCACATAGAAG+TGG	0.522494	4.1:-18846869	MS.gene36439:CDS
AATAACTATGGAGACATTGA+AGG	0.523986	4.1:+18848046	None:intergenic
TCTCTAACCAAACCAAGCTC+AGG	0.524526	4.1:+18847151	None:intergenic
ATAGACAAATATGAGCTTCG+AGG	0.525149	4.1:+18848141	None:intergenic
AGCGGCGGCCACGACTTTGA+GGG	0.526742	4.1:-18847817	MS.gene36439:CDS
TGTCCTACTGTAGGTGTTGG+TGG	0.531106	4.1:-18847622	MS.gene36439:CDS
GTTTCTTGACAGAGAAGCAA+TGG	0.534469	4.1:-18847503	MS.gene36439:CDS
AGATGAATATTGTCTGGCAA+AGG	0.537229	4.1:-18847288	MS.gene36439:CDS
AATAAGTTTCCACTTCTATG+TGG	0.541507	4.1:+18846860	None:intergenic
CTATAGAGATCTTGATATTG+GGG	0.546784	4.1:-18846705	MS.gene36439:CDS
TAGTTAATATATGCAGCTCT+TGG	0.560303	4.1:+18846725	None:intergenic
GCAAGTGTTTGTCCTACTGT+AGG	0.562475	4.1:-18847631	MS.gene36439:CDS
TTTCTTGACAGAGAAGCAAT+GGG	0.565816	4.1:-18847502	MS.gene36439:CDS
AGGAAACTTCTCTTGAACCA+AGG	0.566167	4.1:+18847171	None:intergenic
GGTGGACACTTCAGTGGTGG+TGG	0.566542	4.1:-18847604	MS.gene36439:CDS
TGTAGATAAACTCATACCCT+TGG	0.566543	4.1:-18847188	MS.gene36439:CDS
GTTTGTCCTACTGTAGGTGT+TGG	0.572069	4.1:-18847625	MS.gene36439:CDS
ATTGGGGTGAATAATAACAA+TGG	0.572947	4.1:-18846689	MS.gene36439:CDS
CAACAAAGCTTGTTCACAAG+TGG	0.578289	4.1:-18847345	MS.gene36439:CDS
TGCTCACATAATTGATGTGA+AGG	0.585552	4.1:-18847530	MS.gene36439:CDS
GGAAACTTCTCTTGAACCAA+GGG	0.586930	4.1:+18847172	None:intergenic
TGACAGAGAAGCAATGGGTG+AGG	0.588886	4.1:-18847497	MS.gene36439:CDS
ACATAATTGATGTGAAGGGT+AGG	0.589985	4.1:-18847525	MS.gene36439:CDS
TGAATATGGGATATTTCTAG+AGG	0.601628	4.1:+18847889	None:intergenic
TGTCCCTTGAACACATGAGA+AGG	0.607142	4.1:+18846542	None:intergenic
AAGACCATATTTACGCAACA+AGG	0.610440	4.1:+18847573	None:intergenic
GTTCAATCTGGTGCAACACT+TGG	0.613052	4.1:-18847703	MS.gene36439:CDS
TCGGTTCATTGGCATCAAGA+AGG	0.613335	4.1:-18846824	MS.gene36439:CDS
CAGTAGGACAAACACTTGCA+GGG	0.613601	4.1:+18847635	None:intergenic
GCATCAAGAAGGTGATGAGG+TGG	0.615161	4.1:-18846813	MS.gene36439:CDS
ATGATGATATGGTTTCCATA+TGG	0.616039	4.1:-18846923	MS.gene36439:CDS
GAATTCGAATCTGTAGGCCA+TGG	0.621127	4.1:+18847842	None:intergenic
ATACCTTCTCATGTGTTCAA+GGG	0.623373	4.1:-18846545	MS.gene36439:CDS
TATAAGCAAGCTAGTATTTG+GGG	0.624423	4.1:-18846656	MS.gene36439:CDS
GTTGGTGGACACTTCAGTGG+TGG	0.625730	4.1:-18847607	MS.gene36439:CDS
GGTGTTGGTGGACACTTCAG+TGG	0.638405	4.1:-18847610	MS.gene36439:CDS
AGAGGTGTGACAATTACAAG+AGG	0.647102	4.1:+18847907	None:intergenic
ATGATATGGTTTCCATATGG+TGG	0.655336	4.1:-18846920	MS.gene36439:CDS
TTGGCATCAAGAAGGTGATG+AGG	0.656241	4.1:-18846816	MS.gene36439:CDS
CAGATTCGAATTCGAAGCGG+CGG	0.660883	4.1:-18847832	MS.gene36439:CDS
TGTCCACCAACACCTACAGT+AGG	0.663218	4.1:+18847619	None:intergenic
ATAATCTGTTCCCAATACCA+TGG	0.671513	4.1:-18847859	MS.gene36439:CDS
AAGACAGACCCTCAAAGTCG+TGG	0.674602	4.1:+18847809	None:intergenic
CGCTTCGAATTCGAATCTGT+AGG	0.689715	4.1:+18847836	None:intergenic
GCTCACATAATTGATGTGAA+GGG	0.694549	4.1:-18847529	MS.gene36439:CDS
CTACAGATTCGAATTCGAAG+CGG	0.715605	4.1:-18847835	MS.gene36439:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTTAAATTCAAGTAAAAA+AGG	-	chr4.1:18847420-18847439	MS.gene36439:CDS	10.0%
!!	AATATTGTATTGAAATGAGT+TGG	-	chr4.1:18847553-18847572	MS.gene36439:CDS	20.0%
!!	TAGAAAACTGTATAGTTATA+TGG	-	chr4.1:18847914-18847933	MS.gene36439:CDS	20.0%
!	AACTATAGAGATCTTGATAT+TGG	-	chr4.1:18847975-18847994	MS.gene36439:CDS	25.0%
!	ACTATAGAGATCTTGATATT+GGG	-	chr4.1:18847976-18847995	MS.gene36439:CDS	25.0%
!	ACTTCAAGAATAACTTCAAA+AGG	-	chr4.1:18848057-18848076	MS.gene36439:CDS	25.0%
!	ATATAGAGATGAATATTGTC+TGG	-	chr4.1:18847388-18847407	MS.gene36439:CDS	25.0%
!	CTTATTCATGATTCAATACT+CGG	-	chr4.1:18847839-18847858	MS.gene36439:CDS	25.0%
!	TGGAAAAATTGCACATAAAT+TGG	-	chr4.1:18847889-18847908	MS.gene36439:CDS	25.0%
!	TTGAGTTATGTGAATAACTA+TGG	+	chr4.1:18846651-18846670	None:intergenic	25.0%
!!!	TACTTTTTTCAGTTTCCAAA+AGG	-	chr4.1:18847591-18847610	MS.gene36439:CDS	25.0%
!!!	TTATTTCAAGCTTTGTTTCT+TGG	-	chr4.1:18847468-18847487	MS.gene36439:CDS	25.0%
	AATAACTATGGAGACATTGA+AGG	+	chr4.1:18846639-18846658	None:intergenic	30.0%
	AATAAGTTTCCACTTCTATG+TGG	+	chr4.1:18847825-18847844	None:intergenic	30.0%
	AGATTATGGTTGCTTGAATA+TGG	+	chr4.1:18846810-18846829	None:intergenic	30.0%
	ATGATGATATGGTTTCCATA+TGG	-	chr4.1:18847759-18847778	MS.gene36439:CDS	30.0%
	ATGTACACAAAAAAACTGCA+TGG	-	chr4.1:18846956-18846975	MS.gene36439:CDS	30.0%
	ATTGGGGTGAATAATAACAA+TGG	-	chr4.1:18847993-18848012	MS.gene36439:CDS	30.0%
	CAAGAATAACTTCAAAAGGT+TGG	-	chr4.1:18848061-18848080	MS.gene36439:CDS	30.0%
	CTATAAGCAAGCTAGTATTT+GGG	-	chr4.1:18848025-18848044	MS.gene36439:CDS	30.0%
	CTATAGAGATCTTGATATTG+GGG	-	chr4.1:18847977-18847996	MS.gene36439:CDS	30.0%
	GAACCATCTTCATCAAATAA+AGG	+	chr4.1:18847729-18847748	None:intergenic	30.0%
	GATTATGGTTGCTTGAATAT+GGG	+	chr4.1:18846809-18846828	None:intergenic	30.0%
	GCTTGAAATAAAACTAGTAC+TGG	+	chr4.1:18847459-18847478	None:intergenic	30.0%
	GTAAACACAGTAACAATTGA+TGG	+	chr4.1:18847291-18847310	None:intergenic	30.0%
	GTTTACTGTTCCAAAAACAT+TGG	-	chr4.1:18847305-18847324	MS.gene36439:CDS	30.0%
	TAGTTAATATATGCAGCTCT+TGG	+	chr4.1:18847960-18847979	None:intergenic	30.0%
	TATAAGCAAGCTAGTATTTG+GGG	-	chr4.1:18848026-18848045	MS.gene36439:CDS	30.0%
	TATTGATGTGTAAGAGGAAT+TGG	+	chr4.1:18846704-18846723	None:intergenic	30.0%
	TGTACACAAAAAAACTGCAT+GGG	-	chr4.1:18846957-18846976	MS.gene36439:CDS	30.0%
!	GCATTTTGTTCCAATGTTTT+TGG	+	chr4.1:18847318-18847337	None:intergenic	30.0%
!	TCATTTCTGAAGAAGTTTAG+AGG	+	chr4.1:18848110-18848129	None:intergenic	30.0%
!!	TGAATATGGGATATTTCTAG+AGG	+	chr4.1:18846796-18846815	None:intergenic	30.0%
!!!	AACCTAGAGTTTTGCTTTTT+TGG	+	chr4.1:18847026-18847045	None:intergenic	30.0%
!!!	TGAGATTTTGAGTTGAGAAT+TGG	+	chr4.1:18846729-18846748	None:intergenic	30.0%
	AAGACCATATTTACGCAACA+AGG	+	chr4.1:18847112-18847131	None:intergenic	35.0%
	ACATAATTGATGTGAAGGGT+AGG	-	chr4.1:18847157-18847176	MS.gene36439:CDS	35.0%
	AGAATTCCAATTCCTGAAAC+TGG	-	chr4.1:18847687-18847706	MS.gene36439:CDS	35.0%
	AGATGAATATTGTCTGGCAA+AGG	-	chr4.1:18847394-18847413	MS.gene36439:CDS	35.0%
	AGCCAAAAAAGCAAAACTCT+AGG	-	chr4.1:18847021-18847040	MS.gene36439:CDS	35.0%
	ATAATCTGTTCCCAATACCA+TGG	-	chr4.1:18846823-18846842	MS.gene36439:CDS	35.0%
	ATACCTTCTCATGTGTTCAA+GGG	-	chr4.1:18848137-18848156	MS.gene36439:CDS	35.0%
	ATAGACAAATATGAGCTTCG+AGG	+	chr4.1:18846544-18846563	None:intergenic	35.0%
	ATGAGATCAATGACGACAAA+TGG	+	chr4.1:18846913-18846932	None:intergenic	35.0%
	ATGATATGGTTTCCATATGG+TGG	-	chr4.1:18847762-18847781	MS.gene36439:CDS	35.0%
	ATTCCATTTCCACATAGAAG+TGG	-	chr4.1:18847813-18847832	MS.gene36439:CDS	35.0%
	CCAAAGATGCAATGATGATA+TGG	-	chr4.1:18847748-18847767	MS.gene36439:CDS	35.0%
	CCATATCATCATTGCATCTT+TGG	+	chr4.1:18847751-18847770	None:intergenic	35.0%
	GATGAATATTGTCTGGCAAA+GGG	-	chr4.1:18847395-18847414	MS.gene36439:CDS	35.0%
	GCTATAAGCAAGCTAGTATT+TGG	-	chr4.1:18848024-18848043	MS.gene36439:CDS	35.0%
	GCTCACATAATTGATGTGAA+GGG	-	chr4.1:18847153-18847172	MS.gene36439:CDS	35.0%
	GTGAGCATCAATGATGTTAT+CGG	+	chr4.1:18847139-18847158	None:intergenic	35.0%
	TATACCTTCTCATGTGTTCA+AGG	-	chr4.1:18848136-18848155	MS.gene36439:CDS	35.0%
	TCATTTACCTCTTCAGCAAT+TGG	-	chr4.1:18846586-18846605	MS.gene36439:CDS	35.0%
	TCTAATCCAGTTTCAGGAAT+TGG	+	chr4.1:18847696-18847715	None:intergenic	35.0%
	TGATTCAATACTCGGTTCAT+TGG	-	chr4.1:18847847-18847866	MS.gene36439:CDS	35.0%
	TGCTCACATAATTGATGTGA+AGG	-	chr4.1:18847152-18847171	MS.gene36439:CDS	35.0%
	TGTAGATAAACTCATACCCT+TGG	-	chr4.1:18847494-18847513	MS.gene36439:CDS	35.0%
	TTTCCACTTCTATGTGGAAA+TGG	+	chr4.1:18847819-18847838	None:intergenic	35.0%
	TTTCTTGACAGAGAAGCAAT+GGG	-	chr4.1:18847180-18847199	MS.gene36439:CDS	35.0%
!	AAACTGGATTAGAAGGCATA+TGG	-	chr4.1:18847703-18847722	MS.gene36439:CDS	35.0%
!	ATGGTATTGGGAACAGATTA+TGG	+	chr4.1:18846824-18846843	None:intergenic	35.0%
!	ATTCCTGAAACTGGATTAGA+AGG	-	chr4.1:18847696-18847715	MS.gene36439:CDS	35.0%
!	GTGACAATTACAAGAGGTTT+TGG	+	chr4.1:18846772-18846791	None:intergenic	35.0%
!	TGGCCTTTATTTGATGAAGA+TGG	-	chr4.1:18847723-18847742	MS.gene36439:CDS	35.0%
!	TGTTCACAAGTGGCAATTTT+TGG	-	chr4.1:18847347-18847366	MS.gene36439:CDS	35.0%
!	TTATCCATTTTGCCACCATA+TGG	+	chr4.1:18847777-18847796	None:intergenic	35.0%
!!	AATGGGTGAGGATTTGTTTT+GGG	-	chr4.1:18847197-18847216	MS.gene36439:CDS	35.0%
!!	CTTGGTGACTTTGAAACAAA+AGG	+	chr4.1:18847942-18847961	None:intergenic	35.0%
!!	TTGGAGTATTGATGTGTAAG+AGG	+	chr4.1:18846710-18846729	None:intergenic	35.0%
!!	TTTCAAGCTTTGTTTCTTGG+AGG	-	chr4.1:18847471-18847490	MS.gene36439:CDS	35.0%
!!!	AGGATTTGTTTTGGGCTATT+AGG	-	chr4.1:18847205-18847224	MS.gene36439:CDS	35.0%
!!!	GATTTGTTTTGGGCTATTAG+GGG	-	chr4.1:18847207-18847226	MS.gene36439:CDS	35.0%
!!!	GGATTTGTTTTGGGCTATTA+GGG	-	chr4.1:18847206-18847225	MS.gene36439:CDS	35.0%
!!!	GTTTTGGTGTCATAGTTTCA+TGG	-	chr4.1:18847244-18847263	MS.gene36439:CDS	35.0%
	AAAACTGCATGGGTTCAATC+TGG	-	chr4.1:18846967-18846986	MS.gene36439:CDS	40.0%
	AATCTGTAGGCCATGGTATT+GGG	+	chr4.1:18846836-18846855	None:intergenic	40.0%
	AGGAAACTTCTCTTGAACCA+AGG	+	chr4.1:18847514-18847533	None:intergenic	40.0%
	AGTAGTACCAATTGCTGAAG+AGG	+	chr4.1:18846596-18846615	None:intergenic	40.0%
	ATGCCTTCTAATCCAGTTTC+AGG	+	chr4.1:18847702-18847721	None:intergenic	40.0%
	CTACAGATTCGAATTCGAAG+CGG	-	chr4.1:18846847-18846866	MS.gene36439:CDS	40.0%
	CTGTTAAGCAACACTTCAGT+TGG	+	chr4.1:18847621-18847640	None:intergenic	40.0%
	GGAAACTTCTCTTGAACCAA+GGG	+	chr4.1:18847513-18847532	None:intergenic	40.0%
	GGAACCTTGTTGCGTAAATA+TGG	-	chr4.1:18847105-18847124	MS.gene36439:CDS	40.0%
	GTTTCCATATGGTGGCAAAA+TGG	-	chr4.1:18847770-18847789	MS.gene36439:CDS	40.0%
	GTTTCTTGACAGAGAAGCAA+TGG	-	chr4.1:18847179-18847198	MS.gene36439:CDS	40.0%
!	ACTTCAGTTGGAGAACCTTT+TGG	+	chr4.1:18847609-18847628	None:intergenic	40.0%
!	AGAGGTGTGACAATTACAAG+AGG	+	chr4.1:18846778-18846797	None:intergenic	40.0%
!	CAACAAAGCTTGTTCACAAG+TGG	-	chr4.1:18847337-18847356	MS.gene36439:CDS	40.0%
!	TGTGTAAGAGGAATTGGCTT+TGG	+	chr4.1:18846698-18846717	None:intergenic	40.0%
!!	CAATGGGTGAGGATTTGTTT+TGG	-	chr4.1:18847196-18847215	MS.gene36439:CDS	40.0%
!!!	AAGAGGTTTTGGTGTTGTGT+TGG	+	chr4.1:18846761-18846780	None:intergenic	40.0%
	ACAGTAGGACAAACACTTGC+AGG	+	chr4.1:18847051-18847070	None:intergenic	45.0%
	CAAGAGAAGTTTCCTGAGCT+TGG	-	chr4.1:18847519-18847538	MS.gene36439:CDS	45.0%
	CAGTAGGACAAACACTTGCA+GGG	+	chr4.1:18847050-18847069	None:intergenic	45.0%
	CGCTTCGAATTCGAATCTGT+AGG	+	chr4.1:18846849-18846868	None:intergenic	45.0%
	GAAGTTTCCTGAGCTTGGTT+TGG	-	chr4.1:18847524-18847543	MS.gene36439:CDS	45.0%
	GAATCTGTAGGCCATGGTAT+TGG	+	chr4.1:18846837-18846856	None:intergenic	45.0%
	GAATTCGAATCTGTAGGCCA+TGG	+	chr4.1:18846843-18846862	None:intergenic	45.0%
	GCAAGTGTTTGTCCTACTGT+AGG	-	chr4.1:18847051-18847070	MS.gene36439:CDS	45.0%
	GTTCAATCTGGTGCAACACT+TGG	-	chr4.1:18846979-18846998	MS.gene36439:CDS	45.0%
	GTTTGTCCTACTGTAGGTGT+TGG	-	chr4.1:18847057-18847076	MS.gene36439:CDS	45.0%
	TCGGTTCATTGGCATCAAGA+AGG	-	chr4.1:18847858-18847877	MS.gene36439:CDS	45.0%
	TCTCTAACCAAACCAAGCTC+AGG	+	chr4.1:18847534-18847553	None:intergenic	45.0%
	TGTCCCTTGAACACATGAGA+AGG	+	chr4.1:18848143-18848162	None:intergenic	45.0%
	TTGGCATCAAGAAGGTGATG+AGG	-	chr4.1:18847866-18847885	MS.gene36439:CDS	45.0%
!!!	TTGTTTTGGGCTATTAGGGG+TGG	-	chr4.1:18847210-18847229	MS.gene36439:CDS	45.0%
	AAGACAGACCCTCAAAGTCG+TGG	+	chr4.1:18846876-18846895	None:intergenic	50.0%
	CAGATTCGAATTCGAAGCGG+CGG	-	chr4.1:18846850-18846869	MS.gene36439:CDS	50.0%
	GCATCAAGAAGGTGATGAGG+TGG	-	chr4.1:18847869-18847888	MS.gene36439:CDS	50.0%
	TGACAGAGAAGCAATGGGTG+AGG	-	chr4.1:18847185-18847204	MS.gene36439:CDS	50.0%
	TGTCCACCAACACCTACAGT+AGG	+	chr4.1:18847066-18847085	None:intergenic	50.0%
!	TTTTGGGCTATTAGGGGTGG+TGG	-	chr4.1:18847213-18847232	MS.gene36439:CDS	50.0%
!!	CACTTCAGTGGTGGTGGATA+TGG	-	chr4.1:18847084-18847103	MS.gene36439:CDS	50.0%
!!	TGTCCTACTGTAGGTGTTGG+TGG	-	chr4.1:18847060-18847079	MS.gene36439:CDS	50.0%
!	GTTGGTGGACACTTCAGTGG+TGG	-	chr4.1:18847075-18847094	MS.gene36439:CDS	55.0%
!!	GGTGTTGGTGGACACTTCAG+TGG	-	chr4.1:18847072-18847091	MS.gene36439:CDS	55.0%
!!!	GGTGGTGGAGGAGCAAGTTT+TGG	-	chr4.1:18847228-18847247	MS.gene36439:CDS	55.0%
	GGTGGACACTTCAGTGGTGG+TGG	-	chr4.1:18847078-18847097	MS.gene36439:CDS	60.0%
!	TGGGCTATTAGGGGTGGTGG+AGG	-	chr4.1:18847216-18847235	MS.gene36439:CDS	60.0%
	AAGCGGCGGCCACGACTTTG+AGG	-	chr4.1:18846864-18846883	MS.gene36439:CDS	65.0%
	AGCGGCGGCCACGACTTTGA+GGG	-	chr4.1:18846865-18846884	MS.gene36439:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	18846535	18848169	18846535	ID=MS.gene36439
chr4.1	mRNA	18846535	18848169	18846535	ID=MS.gene36439.t1;Parent=MS.gene36439
chr4.1	exon	18846535	18848169	18846535	ID=MS.gene36439.t1.exon1;Parent=MS.gene36439.t1
chr4.1	CDS	18846535	18848169	18846535	ID=cds.MS.gene36439.t1;Parent=MS.gene36439.t1

Gene Sequence

>MS.gene36439

ATGATGCCTCGAAGCTCATATTTGTCTATTATACTAATTGCTATTTTATTTTCATTTACCTCTTCAGCAATTGGTACTACTACTAATGAAGATAATAACTTCCTTCAATGTCTCCATAGTTATTCACATAACTCAACTTCAATCTCTGAAGTTGTGTACACCAAAGCCAATTCCTCTTACACATCAATACTCCAATTCTCAACTCAAAATCTCAGATTTGCAACCAACACAACACCAAAACCTCTTGTAATTGTCACACCTCTAGAAATATCCCATATTCAAGCAACCATAATCTGTTCCCAATACCATGGCCTACAGATTCGAATTCGAAGCGGCGGCCACGACTTTGAGGGTCTGTCTTATGTCTCTGAAGTTCCATTTGTCGTCATTGATCTCATAAACTTCAGAGAAATTGAAATAAATGTACACAAAAAAACTGCATGGGTTCAATCTGGTGCAACACTTGGTGAACTTTACTACGCAATTAGCCAAAAAAGCAAAACTCTAGGTTTCCCTGCAAGTGTTTGTCCTACTGTAGGTGTTGGTGGACACTTCAGTGGTGGTGGATATGGAACCTTGTTGCGTAAATATGGTCTTGCAGCCGATAACATCATTGATGCTCACATAATTGATGTGAAGGGTAGGTTTCTTGACAGAGAAGCAATGGGTGAGGATTTGTTTTGGGCTATTAGGGGTGGTGGAGGAGCAAGTTTTGGTGTCATAGTTTCATGGAAGATTAAACTTGTTCAAGTTCCATCAATTGTTACTGTGTTTACTGTTCCAAAAACATTGGAACAAAATGCAACAAAGCTTGTTCACAAGTGGCAATTTTTGGCAAGTAAACTTGATGAAAATATAGAGATGAATATTGTCTGGCAAAGGGTAAATTTAAATTCAAGTAAAAAAGGTGAGTCAAAGTCACCAGTACTAGTTTTATTTCAAGCTTTGTTTCTTGGAGGTGTAGATAAACTCATACCCTTGGTTCAAGAGAAGTTTCCTGAGCTTGGTTTGGTTAGAGAATATTGTATTGAAATGAGTTGGATTGAATCTGTTCTTTACTTTTTTCAGTTTCCAAAAGGTTCTCCAACTGAAGTGTTGCTTAACAGAACACAAGCTACACTTGATATTTTCAAAGCAAAATCTGATTTTGTGAGAATTCCAATTCCTGAAACTGGATTAGAAGGCATATGGCCTTTATTTGATGAAGATGGTTCCAAAGATGCAATGATGATATGGTTTCCATATGGTGGCAAAATGGATAATATTTCAGAGTCTGAAATTCCATTTCCACATAGAAGTGGAAACTTATTCATGATTCAATACTCGGTTCATTGGCATCAAGAAGGTGATGAGGTGGAAAAATTGCACATAAATTGGATTAGAAAACTGTATAGTTATATGGAACCTTTTGTTTCAAAGTCACCAAGAGCTGCATATATTAACTATAGAGATCTTGATATTGGGGTGAATAATAACAATGGATACACAAGCTATAAGCAAGCTAGTATTTGGGGTGTTAAGTACTTCAAGAATAACTTCAAAAGGTTGGCAAAAGTGAAGACAAAAGTTGATCCTCTAAACTTCTTCAGAAATGAACAGAGTATACCTTCTCATGTGTTCAAGGGACACAAATAG

Protein sequence

>MS.gene36439.t1

MMPRSSYLSIILIAILFSFTSSAIGTTTNEDNNFLQCLHSYSHNSTSISEVVYTKANSSYTSILQFSTQNLRFATNTTPKPLVIVTPLEISHIQATIICSQYHGLQIRIRSGGHDFEGLSYVSEVPFVVIDLINFREIEINVHKKTAWVQSGATLGELYYAISQKSKTLGFPASVCPTVGVGGHFSGGGYGTLLRKYGLAADNIIDAHIIDVKGRFLDREAMGEDLFWAIRGGGGASFGVIVSWKIKLVQVPSIVTVFTVPKTLEQNATKLVHKWQFLASKLDENIEMNIVWQRVNLNSSKKGESKSPVLVLFQALFLGGVDKLIPLVQEKFPELGLVREYCIEMSWIESVLYFFQFPKGSPTEVLLNRTQATLDIFKAKSDFVRIPIPETGLEGIWPLFDEDGSKDAMMIWFPYGGKMDNISESEIPFPHRSGNLFMIQYSVHWHQEGDEVEKLHINWIRKLYSYMEPFVSKSPRAAYINYRDLDIGVNNNNGYTSYKQASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSHVFKGHK