AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028357

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028357.t1 MTR_4g094478 95.880 534 22 0 1 534 1 534 0.0 1034
MS.gene028357.t1 MTR_4g094480 84.104 541 86 0 1 541 1 541 0.0 930
MS.gene028357.t1 MTR_4g094488 79.926 543 107 1 1 541 1 543 0.0 891
MS.gene028357.t1 MTR_4g094495 77.473 546 118 3 1 541 1 546 0.0 857
MS.gene028357.t1 MTR_4g094492 76.471 544 123 2 1 541 1 542 0.0 848
MS.gene028357.t1 MTR_4g094418 70.805 435 122 2 104 534 1 434 0.0 654
MS.gene028357.t1 MTR_2g031390 52.157 510 237 5 26 533 23 527 0.0 556
MS.gene028357.t1 MTR_2g031560 51.136 528 251 3 6 533 1 521 0.0 554
MS.gene028357.t1 MTR_3g009880 53.626 524 232 7 12 533 4 518 0.0 549
MS.gene028357.t1 MTR_3g009760 51.625 523 243 5 13 533 6 520 0.0 543
MS.gene028357.t1 MTR_2g031590 52.612 536 246 5 2 534 1 531 0.0 542
MS.gene028357.t1 MTR_3g009820 51.243 523 245 5 13 533 6 520 0.0 538
MS.gene028357.t1 MTR_4g094498 55.200 500 217 3 35 534 41 533 0.0 537
MS.gene028357.t1 MTR_2g031420 54.545 517 220 7 18 533 23 525 0.0 532
MS.gene028357.t1 MTR_4g094520 51.901 526 244 6 12 534 12 531 0.0 528
MS.gene028357.t1 MTR_2g031460 52.642 530 237 7 4 532 8 524 0.0 525
MS.gene028357.t1 MTR_4g094518 53.057 507 229 6 30 533 28 528 1.02e-178 514
MS.gene028357.t1 MTR_2g031490 50.187 536 257 7 3 533 6 536 3.14e-174 503
MS.gene028357.t1 MTR_4g094515 51.321 530 251 4 8 534 624 1149 2.43e-169 510
MS.gene028357.t1 MTR_4g094515 50.690 507 242 5 32 535 39 540 1.66e-162 493
MS.gene028357.t1 MTR_2g031510 50.992 504 239 5 33 533 40 538 6.17e-169 490
MS.gene028357.t1 MTR_6g017205 48.868 530 261 5 8 536 7 527 9.62e-169 489
MS.gene028357.t1 MTR_4g088355 51.068 515 240 6 31 540 31 538 2.34e-168 488
MS.gene028357.t1 MTR_4g091150 51.866 509 232 6 31 533 37 538 6.31e-168 487
MS.gene028357.t1 MTR_4g091200 49.153 531 257 5 6 535 8 526 8.02e-168 486
MS.gene028357.t1 MTR_4g091190 47.834 531 268 5 12 540 10 533 2.72e-167 485
MS.gene028357.t1 MTR_4g057990 49.149 529 258 6 8 535 4 522 8.85e-166 481
MS.gene028357.t1 MTR_2g023590 48.718 468 233 3 68 534 4 465 5.30e-145 426
MS.gene028357.t1 MTR_4g091170 46.122 477 231 6 73 548 101 552 3.43e-143 425
MS.gene028357.t1 MTR_1g076830 42.308 494 274 6 57 544 58 546 6.16e-130 390
MS.gene028357.t1 MTR_3g009850 58.036 224 92 2 310 533 5 226 9.45e-87 268
MS.gene028357.t1 MTR_2g031600 57.724 246 102 1 1 246 1 244 2.46e-85 270
MS.gene028357.t1 MTR_2g031600 51.852 162 74 3 374 534 241 399 5.50e-49 175
MS.gene028357.t1 MTR_2g084370 46.847 111 37 2 128 238 1 89 5.99e-29 110
MS.gene028357.t1 MTR_2g084405 53.165 79 37 0 128 206 1 79 4.61e-19 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028357.t1 AT4G20820 49.538 541 255 5 2 537 1 528 0.0 524
MS.gene028357.t1 AT5G44440 50.471 531 247 6 8 533 8 527 0.0 523
MS.gene028357.t1 AT5G44440 50.471 531 247 6 8 533 78 597 1.18e-180 522
MS.gene028357.t1 AT5G44400 48.699 538 260 10 3 533 6 534 9.46e-175 504
MS.gene028357.t1 AT2G34790 47.744 532 263 8 9 536 11 531 3.75e-174 503
MS.gene028357.t1 AT5G44410 49.348 537 248 9 4 533 8 527 1.02e-171 497
MS.gene028357.t1 AT5G44390 46.950 541 271 9 3 534 6 539 1.60e-170 494
MS.gene028357.t1 AT1G30760 48.444 514 252 6 27 536 29 533 9.90e-170 492
MS.gene028357.t1 AT1G30760 48.444 514 252 6 27 536 47 551 1.47e-169 492
MS.gene028357.t1 AT5G44360 49.168 541 254 12 1 533 1 528 7.71e-169 489
MS.gene028357.t1 AT5G44360 49.168 541 254 12 1 533 17 544 9.38e-169 489
MS.gene028357.t1 AT5G44380 48.794 539 261 8 3 533 6 537 5.76e-165 480
MS.gene028357.t1 AT5G44380 48.794 539 261 8 3 533 46 577 2.33e-164 479
MS.gene028357.t1 AT1G30710 45.966 533 266 10 9 533 8 526 5.74e-160 467
MS.gene028357.t1 AT1G26420 46.692 529 269 9 8 533 5 523 1.96e-158 462
MS.gene028357.t1 AT1G30730 46.768 526 271 5 10 533 5 523 3.22e-158 462
MS.gene028357.t1 AT1G26410 48.810 504 246 8 33 533 53 547 1.01e-157 462
MS.gene028357.t1 AT4G20860 48.859 526 238 13 22 533 19 527 1.06e-156 458
MS.gene028357.t1 AT4G20840 46.680 512 262 6 31 539 36 539 3.44e-156 457
MS.gene028357.t1 AT1G30700 46.704 531 273 6 6 533 1 524 7.58e-156 456
MS.gene028357.t1 AT1G34575 46.341 533 266 10 9 536 8 525 1.81e-155 455
MS.gene028357.t1 AT1G11770 45.336 536 280 7 4 534 1 528 2.79e-154 452
MS.gene028357.t1 AT1G26400 45.865 532 275 8 8 536 5 526 1.21e-153 450
MS.gene028357.t1 AT1G26380 46.654 523 268 8 13 533 10 523 3.77e-153 449
MS.gene028357.t1 AT1G26390 47.024 504 259 5 32 533 28 525 7.52e-152 446
MS.gene028357.t1 AT4G20800 45.508 512 271 5 23 533 19 523 9.81e-150 441
MS.gene028357.t1 AT1G30720 47.117 503 257 5 33 533 29 524 1.97e-145 429
MS.gene028357.t1 AT4G20830 46.548 507 258 7 32 534 38 535 8.47e-145 428
MS.gene028357.t1 AT4G20830 46.228 517 263 8 32 544 38 543 2.41e-144 428
MS.gene028357.t1 AT1G30740 45.131 534 272 11 10 534 6 527 5.66e-144 426
MS.gene028357.t1 AT1G30740 45.131 534 272 11 10 534 9 530 8.44e-144 426
MS.gene028357.t1 AT1G01980 44.320 537 282 9 6 534 6 533 6.61e-142 421
MS.gene028357.t1 AT2G34810 43.307 508 280 5 31 533 33 537 3.82e-135 404

Find 110 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATTATGGTTGTTTGAATT+TGG 0.093676 4.2:+18048596 None:intergenic
GAATCGGTTCTTTACCTTTA+TGG 0.132034 4.2:-18047830 MS.gene028357:CDS
AAAATTCCCATTCCTGAAAT+TGG 0.132285 4.2:-18047722 MS.gene028357:CDS
GAATCTGCAGGCTGTGAATT+TGG 0.143780 4.2:+18048569 None:intergenic
ATTCCTTCTAATCCAATTTC+AGG 0.177038 4.2:+18047710 None:intergenic
AATCGGTTCTTTACCTTTAT+GGG 0.198752 4.2:-18047829 MS.gene028357:CDS
CACCCGGAAAACCAAGATTT+TGG 0.227676 4.2:+18048371 None:intergenic
GCTACAAGCAAGCTAGTATT+TGG 0.235073 4.2:-18047385 MS.gene028357:CDS
AATTATAGAGACCTTGATAT+TGG 0.257500 4.2:-18047434 MS.gene028357:CDS
GTGAATTTGGGAACAGATTA+TGG 0.258116 4.2:+18048582 None:intergenic
AAGGGTAAATTCACGTATAA+AGG 0.270470 4.2:-18047990 MS.gene028357:CDS
GATTATGGTTGTTTGAATTT+GGG 0.274542 4.2:+18048597 None:intergenic
AAATATCACCATGGCATCTT+TGG 0.277805 4.2:+18047661 None:intergenic
GGAACGTTGGTTCGTAAATT+CGG 0.281043 4.2:-18048298 MS.gene028357:CDS
ATTGGGATGAATAATATTAA+TGG 0.291927 4.2:-18047416 MS.gene028357:CDS
GTTTCAAGTGGTTCGTCTTT+CGG 0.292602 4.2:+18047803 None:intergenic
CAATGGGTGAGGATTTGTTT+TGG 0.303294 4.2:-18048207 MS.gene028357:CDS
ATATTTCAAGCCTTGTTTCT+TGG 0.305951 4.2:-18047941 MS.gene028357:CDS
ATTCCTGAAATTGGATTAGA+AGG 0.307063 4.2:-18047713 MS.gene028357:CDS
TCATTTCTGAAGAAGTTTAG+AGG 0.331220 4.2:+18047302 None:intergenic
ATTATAGAGACCTTGATATT+GGG 0.343771 4.2:-18047433 MS.gene028357:CDS
AATCTGCAGGCTGTGAATTT+GGG 0.344345 4.2:+18048570 None:intergenic
TTAAAGACTGTCACAGTTGA+TGG 0.358100 4.2:+18048115 None:intergenic
AAATTTATTACTCAGTTCAT+TGG 0.361328 4.2:-18047562 MS.gene028357:CDS
TGAATTTGGGAAATCTGTTT+AGG 0.366012 4.2:+18048610 None:intergenic
CTCTGAAGTTTGTGAGATCA+AGG 0.366703 4.2:+18048482 None:intergenic
TGGAAGACTGTATAGTTATA+TGG 0.367339 4.2:-18047495 MS.gene028357:CDS
AGGGTAAATTCACGTATAAA+GGG 0.370370 4.2:-18047989 MS.gene028357:CDS
GTGATAATGACAAGAGGTTT+AGG 0.372360 4.2:+18048634 None:intergenic
TATTGATGAGTAAGAGGAAT+TGG 0.374157 4.2:+18048702 None:intergenic
CGTCTTTCGGAAACCCATAA+AGG 0.375701 4.2:+18047816 None:intergenic
CAAGAACAACTTCAAAAGAT+TGG 0.391940 4.2:-18047348 MS.gene028357:CDS
ATAGTAAAATATAAGTTTAG+AGG 0.392038 4.2:+18048859 None:intergenic
CTACAAGCAAGCTAGTATTT+GGG 0.397390 4.2:-18047384 MS.gene028357:CDS
TTTCCATGTCTGTGTGGAAA+TGG 0.399014 4.2:+18047593 None:intergenic
AAATTGGATTAGAAGGAATA+TGG 0.403457 4.2:-18047706 MS.gene028357:CDS
CAAGAGAAGTTTCCTGAGCT+TGG 0.412203 4.2:-18047890 MS.gene028357:CDS
GTAAATATCCTTTGCAGCTA+GGG 0.415732 4.2:+18047766 None:intergenic
GAACGTTGGTTCGTAAATTC+GGG 0.417661 4.2:-18048297 MS.gene028357:CDS
TCTAATCCAATTTCAGGAAT+GGG 0.420910 4.2:+18047716 None:intergenic
TTCTAATCCAATTTCAGGAA+TGG 0.423335 4.2:+18047715 None:intergenic
TGTAAATATCCTTTGCAGCT+AGG 0.425502 4.2:+18047765 None:intergenic
GGTGGTGGAGGAGCAAGTTT+CGG 0.436627 4.2:-18048175 MS.gene028357:CDS
GAAGTTTCCTGAGCTTGGTT+TGG 0.437875 4.2:-18047885 MS.gene028357:CDS
TTTCAAGCCTTGTTTCTTGG+AGG 0.440275 4.2:-18047938 MS.gene028357:CDS
TAATTAATATATGCAGCTCT+TGG 0.463039 4.2:+18047452 None:intergenic
TTGGAGTATTGATGAGTAAG+AGG 0.465775 4.2:+18048696 None:intergenic
TATACCTTCTCATGTGTTCA+AGG 0.466922 4.2:-18047273 MS.gene028357:CDS
GTTTCGGAGTCATAATTTCA+TGG 0.470180 4.2:-18048159 MS.gene028357:CDS
AAAATGAAAATGAATTGGAT+TGG 0.473281 4.2:-18047515 MS.gene028357:CDS
AGAACAGCTTGGGTTCAATC+TGG 0.477608 4.2:-18048436 MS.gene028357:CDS
TATTATTCATCCCAATATCA+AGG 0.478701 4.2:+18047423 None:intergenic
GGTGGTGAATGTCCTACTAT+AGG 0.479825 4.2:-18048352 MS.gene028357:CDS
AAGTGGTGGCCATGACTTTG+AGG 0.480136 4.2:-18048539 MS.gene028357:CDS
TGGGCTATTAGAGGTGGTGG+AGG 0.490480 4.2:-18048187 MS.gene028357:CDS
AATTACTGTTATCTTACAAA+GGG 0.491690 4.2:-18048008 MS.gene028357:CDS
TGAGTAAGAGGAATTGGCTT+TGG 0.492341 4.2:+18048708 None:intergenic
AAGATTGTGTGGAGATGAGT+TGG 0.493160 4.2:-18047856 MS.gene028357:CDS
AAGGGACATAAAGAAATCCT+TGG 0.500659 4.2:-18047254 MS.gene028357:CDS
TGTAGAAAACAGAACAGCTT+GGG 0.504087 4.2:-18048446 MS.gene028357:CDS
TTATCCATTATGCCACCATA+AGG 0.506968 4.2:+18047635 None:intergenic
AAACAGAACTTCAGAAACAT+AGG 0.509505 4.2:+18048510 None:intergenic
GTTCAATCTGGTGCAACAAT+TGG 0.515144 4.2:-18048424 MS.gene028357:CDS
GCACCATCTTCATGAAACAT+AGG 0.517235 4.2:+18047683 None:intergenic
GGAGATGAGTTGGGTTGAAT+CGG 0.522904 4.2:-18047846 MS.gene028357:CDS
TCTCTAACCAAACCAAGCTC+AGG 0.524526 4.2:+18047878 None:intergenic
AGAAATCCTTGGAGAAGCTA+AGG 0.530460 4.2:-18047243 MS.gene028357:CDS
GTTTCTTGACAGAGAAGCAA+TGG 0.534469 4.2:-18048224 MS.gene028357:CDS
AAGAGGTTTAGGTGTTGTGT+TGG 0.535453 4.2:+18048645 None:intergenic
CAACAGAACCCTAGCTGCAA+AGG 0.535645 4.2:-18047774 MS.gene028357:CDS
CACTTCGGATTCGAATCTGC+AGG 0.543831 4.2:+18048557 None:intergenic
TGTCCACCAACACCTATAGT+AGG 0.545211 4.2:+18048340 None:intergenic
AGTGGTGGCCATGACTTTGA+GGG 0.547187 4.2:-18048538 MS.gene028357:CDS
CTGTTGAGCAACGTTTCAAG+TGG 0.556440 4.2:+18047791 None:intergenic
CAAAGTCATGGCCACCACTT+CGG 0.557584 4.2:+18048542 None:intergenic
AGATTGTGTGGAGATGAGTT+GGG 0.559515 4.2:-18047855 MS.gene028357:CDS
TGGCCTATGTTTCATGAAGA+TGG 0.563628 4.2:-18047686 MS.gene028357:CDS
TTTCTTGACAGAGAAGCAAT+GGG 0.565816 4.2:-18048223 MS.gene028357:CDS
AAATTACTGTTATCTTACAA+AGG 0.566762 4.2:-18048009 MS.gene028357:CDS
ATTCCATTTCCACACAGACA+TGG 0.568860 4.2:-18047596 MS.gene028357:CDS
TTATGACCTTAGCTTCTCCA+AGG 0.571842 4.2:+18047237 None:intergenic
TGCTAACATAATTGATGTGA+AGG 0.573171 4.2:-18048251 MS.gene028357:CDS
AATAACTATAGAGGCACTGA+AGG 0.579605 4.2:+18048767 None:intergenic
AGTTATGTGAATAACTATAG+AGG 0.581696 4.2:+18048758 None:intergenic
ATGTAGAAAACAGAACAGCT+TGG 0.583094 4.2:-18048447 MS.gene028357:CDS
GGTGTTGGTGGACACATCAG+TGG 0.584088 4.2:-18048331 MS.gene028357:CDS
TGACAGAGAAGCAATGGGTG+AGG 0.588886 4.2:-18048218 MS.gene028357:CDS
CAACAAAGCTTATTCACAAG+TGG 0.589114 4.2:-18048066 MS.gene028357:CDS
ACATAATTGATGTGAAGGGT+AGG 0.589985 4.2:-18048246 MS.gene028357:CDS
GTGTTGGTGGACACATCAGT+GGG 0.592913 4.2:-18048330 MS.gene028357:CDS
TGTCCCTTGAACACATGAGA+AGG 0.597332 4.2:+18047269 None:intergenic
TGTCCTACTATAGGTGTTGG+TGG 0.598722 4.2:-18048343 MS.gene028357:CDS
GAATGTCCTACTATAGGTGT+TGG 0.600015 4.2:-18048346 MS.gene028357:CDS
TACAAGCAAGCTAGTATTTG+GGG 0.602138 4.2:-18047383 MS.gene028357:CDS
GTGGCCATGACTTTGAGGGT+AGG 0.616257 4.2:-18048534 MS.gene028357:CDS
TTTGGTTAGAGAAGATTGTG+TGG 0.617677 4.2:-18047867 MS.gene028357:CDS
GTTGGTGGACACATCAGTGG+GGG 0.622615 4.2:-18048328 MS.gene028357:CDS
ATACCTTCTCATGTGTTCAA+GGG 0.623373 4.2:-18047272 MS.gene028357:CDS
GGGTAAATTCACGTATAAAG+GGG 0.627128 4.2:-18047988 MS.gene028357:CDS
CAGATTCGAATCCGAAGTGG+TGG 0.628502 4.2:-18048553 MS.gene028357:CDS
AGGACCTACCCTCAAAGTCA+TGG 0.631524 4.2:+18048530 None:intergenic
ATCTACACCTCCAAGAAACA+AGG 0.636642 4.2:+18047931 None:intergenic
TTAGGTGTGATAATGACAAG+AGG 0.664428 4.2:+18048628 None:intergenic
TATAAATTTCCATGTCTGTG+TGG 0.667802 4.2:+18047587 None:intergenic
CTGCAGATTCGAATCCGAAG+TGG 0.667805 4.2:-18048556 MS.gene028357:CDS
AGATGGTGCCAAAGATGCCA+TGG 0.669851 4.2:-18047669 MS.gene028357:CDS
GCTAACATAATTGATGTGAA+GGG 0.678871 4.2:-18048250 MS.gene028357:CDS
TGTTGGTGGACACATCAGTG+GGG 0.680797 4.2:-18048329 MS.gene028357:CDS
ATAGTAGGACATTCACCACC+CGG 0.688594 4.2:+18048355 None:intergenic
TTGGCATCAAGAAAGTGATG+AGG 0.701714 4.2:-18047543 MS.gene028357:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTAAAATATAAGTTTAG+AGG + chr4.2:18047238-18047257 None:intergenic 15.0%
!! AAAATGAAAATGAATTGGAT+TGG - chr4.2:18048579-18048598 MS.gene028357:CDS 20.0%
!! AAATTACTGTTATCTTACAA+AGG - chr4.2:18048085-18048104 MS.gene028357:CDS 20.0%
!! AAATTTATTACTCAGTTCAT+TGG - chr4.2:18048532-18048551 MS.gene028357:CDS 20.0%
!! AATTACTGTTATCTTACAAA+GGG - chr4.2:18048086-18048105 MS.gene028357:CDS 20.0%
!! ATTGGGATGAATAATATTAA+TGG - chr4.2:18048678-18048697 MS.gene028357:CDS 20.0%
!! TCGAAAAAATGAAAATGAAT+TGG - chr4.2:18048574-18048593 MS.gene028357:CDS 20.0%
! AATTATAGAGACCTTGATAT+TGG - chr4.2:18048660-18048679 MS.gene028357:CDS 25.0%
! AGATTATGGTTGTTTGAATT+TGG + chr4.2:18047501-18047520 None:intergenic 25.0%
! AGTTATGTGAATAACTATAG+AGG + chr4.2:18047339-18047358 None:intergenic 25.0%
! ATAAGGAAAAAATATCACCA+TGG + chr4.2:18048445-18048464 None:intergenic 25.0%
! ATTATAGAGACCTTGATATT+GGG - chr4.2:18048661-18048680 MS.gene028357:CDS 25.0%
! CTTTAATGTTCCAAAAACAT+TGG - chr4.2:18047996-18048015 MS.gene028357:CDS 25.0%
! GATTATGGTTGTTTGAATTT+GGG + chr4.2:18047500-18047519 None:intergenic 25.0%
! TAATTAATATATGCAGCTCT+TGG + chr4.2:18048645-18048664 None:intergenic 25.0%
! TATTATTCATCCCAATATCA+AGG + chr4.2:18048674-18048693 None:intergenic 25.0%
!! AAATTGGATTAGAAGGAATA+TGG - chr4.2:18048388-18048407 MS.gene028357:CDS 25.0%
!!! AACCAAGATTTTGGTTTTTT+CGG + chr4.2:18047717-18047736 None:intergenic 25.0%
!!! ATGGTGATATTTTTTCCTTA+TGG - chr4.2:18048444-18048463 MS.gene028357:CDS 25.0%
!!! TGAGATTTTGAGTTGTAAAT+TGG + chr4.2:18047420-18047439 None:intergenic 25.0%
AAAATTCCCATTCCTGAAAT+TGG - chr4.2:18048372-18048391 MS.gene028357:CDS 30.0%
AAACAGAACTTCAGAAACAT+AGG + chr4.2:18047587-18047606 None:intergenic 30.0%
AACCGAAAAAACCAAAATCT+TGG - chr4.2:18047712-18047731 MS.gene028357:CDS 30.0%
AAGGGTAAATTCACGTATAA+AGG - chr4.2:18048104-18048123 MS.gene028357:CDS 30.0%
AGGGTAAATTCACGTATAAA+GGG - chr4.2:18048105-18048124 MS.gene028357:CDS 30.0%
ATTCCTTCTAATCCAATTTC+AGG + chr4.2:18048387-18048406 None:intergenic 30.0%
CAAGAACAACTTCAAAAGAT+TGG - chr4.2:18048746-18048765 MS.gene028357:CDS 30.0%
GCTAACATAATTGATGTGAA+GGG - chr4.2:18047844-18047863 MS.gene028357:CDS 30.0%
TATAAATTTCCATGTCTGTG+TGG + chr4.2:18048510-18048529 None:intergenic 30.0%
TATTGATGAGTAAGAGGAAT+TGG + chr4.2:18047395-18047414 None:intergenic 30.0%
TCTAATCCAATTTCAGGAAT+GGG + chr4.2:18048381-18048400 None:intergenic 30.0%
TGAATTTGGGAAATCTGTTT+AGG + chr4.2:18047487-18047506 None:intergenic 30.0%
TGCTAACATAATTGATGTGA+AGG - chr4.2:18047843-18047862 MS.gene028357:CDS 30.0%
TGGAAGACTGTATAGTTATA+TGG - chr4.2:18048599-18048618 MS.gene028357:CDS 30.0%
TTCTAATCCAATTTCAGGAA+TGG + chr4.2:18048382-18048401 None:intergenic 30.0%
! AATCGGTTCTTTACCTTTAT+GGG - chr4.2:18048265-18048284 MS.gene028357:CDS 30.0%
! ATTCCTGAAATTGGATTAGA+AGG - chr4.2:18048381-18048400 MS.gene028357:CDS 30.0%
! GCATTTTGTTCCAATGTTTT+TGG + chr4.2:18048009-18048028 None:intergenic 30.0%
! TCATTTCTGAAGAAGTTTAG+AGG + chr4.2:18048795-18048814 None:intergenic 30.0%
!! AAACCAAAATCTTGGTTTTC+CGG - chr4.2:18047720-18047739 MS.gene028357:CDS 30.0%
!! ATATTTCAAGCCTTGTTTCT+TGG - chr4.2:18048153-18048172 MS.gene028357:CDS 30.0%
!!! CTTGGAGATTTTGAAACAAA+AGG + chr4.2:18048627-18048646 None:intergenic 30.0%
!!! GTGATATTTTTTCCTTATGG+TGG - chr4.2:18048447-18048466 MS.gene028357:CDS 30.0%
AAATATCACCATGGCATCTT+TGG + chr4.2:18048436-18048455 None:intergenic 35.0%
AAGGGACATAAAGAAATCCT+TGG - chr4.2:18048840-18048859 MS.gene028357:CDS 35.0%
ACATAATTGATGTGAAGGGT+AGG - chr4.2:18047848-18047867 MS.gene028357:CDS 35.0%
ATACCTTCTCATGTGTTCAA+GGG - chr4.2:18048822-18048841 MS.gene028357:CDS 35.0%
ATGTAGAAAACAGAACAGCT+TGG - chr4.2:18047647-18047666 MS.gene028357:CDS 35.0%
CAACAAAGCTTATTCACAAG+TGG - chr4.2:18048028-18048047 MS.gene028357:CDS 35.0%
CTACAAGCAAGCTAGTATTT+GGG - chr4.2:18048710-18048729 MS.gene028357:CDS 35.0%
GGGTAAATTCACGTATAAAG+GGG - chr4.2:18048106-18048125 MS.gene028357:CDS 35.0%
GTAAATATCCTTTGCAGCTA+GGG + chr4.2:18048331-18048350 None:intergenic 35.0%
GTGAATTTGGGAACAGATTA+TGG + chr4.2:18047515-18047534 None:intergenic 35.0%
GTTTCGGAGTCATAATTTCA+TGG - chr4.2:18047935-18047954 MS.gene028357:CDS 35.0%
TACAAGCAAGCTAGTATTTG+GGG - chr4.2:18048711-18048730 MS.gene028357:CDS 35.0%
TATACCTTCTCATGTGTTCA+AGG - chr4.2:18048821-18048840 MS.gene028357:CDS 35.0%
TGTAAATATCCTTTGCAGCT+AGG + chr4.2:18048332-18048351 None:intergenic 35.0%
TGTAGAAAACAGAACAGCTT+GGG - chr4.2:18047648-18047667 MS.gene028357:CDS 35.0%
TTAAAGACTGTCACAGTTGA+TGG + chr4.2:18047982-18048001 None:intergenic 35.0%
TTATCCATTATGCCACCATA+AGG + chr4.2:18048462-18048481 None:intergenic 35.0%
TTTCTTGACAGAGAAGCAAT+GGG - chr4.2:18047871-18047890 MS.gene028357:CDS 35.0%
TTTGGTTAGAGAAGATTGTG+TGG - chr4.2:18048227-18048246 MS.gene028357:CDS 35.0%
! GAATCGGTTCTTTACCTTTA+TGG - chr4.2:18048264-18048283 MS.gene028357:CDS 35.0%
! GTGATAATGACAAGAGGTTT+AGG + chr4.2:18047463-18047482 None:intergenic 35.0%
! TTAGGTGTGATAATGACAAG+AGG + chr4.2:18047469-18047488 None:intergenic 35.0%
! TTTTCCTTATGGTGGCATAA+TGG - chr4.2:18048455-18048474 MS.gene028357:CDS 35.0%
!! AACCAAAATCTTGGTTTTCC+GGG - chr4.2:18047721-18047740 MS.gene028357:CDS 35.0%
!! AATAACTATAGAGGCACTGA+AGG + chr4.2:18047330-18047349 None:intergenic 35.0%
!! AATGGGTGAGGATTTGTTTT+GGG - chr4.2:18047888-18047907 MS.gene028357:CDS 35.0%
!! TTGGAGTATTGATGAGTAAG+AGG + chr4.2:18047401-18047420 None:intergenic 35.0%
!!! GATTTGTTTTGGGCTATTAG+AGG - chr4.2:18047898-18047917 MS.gene028357:CDS 35.0%
AAGATTGTGTGGAGATGAGT+TGG - chr4.2:18048238-18048257 MS.gene028357:CDS 40.0%
AATCTGCAGGCTGTGAATTT+GGG + chr4.2:18047527-18047546 None:intergenic 40.0%
AGAAATCCTTGGAGAAGCTA+AGG - chr4.2:18048851-18048870 MS.gene028357:CDS 40.0%
AGATTGTGTGGAGATGAGTT+GGG - chr4.2:18048239-18048258 MS.gene028357:CDS 40.0%
ATCTACACCTCCAAGAAACA+AGG + chr4.2:18048166-18048185 None:intergenic 40.0%
ATTCCATTTCCACACAGACA+TGG - chr4.2:18048498-18048517 MS.gene028357:CDS 40.0%
GAATGTCCTACTATAGGTGT+TGG - chr4.2:18047748-18047767 MS.gene028357:CDS 40.0%
GCACCATCTTCATGAAACAT+AGG + chr4.2:18048414-18048433 None:intergenic 40.0%
GCTACAAGCAAGCTAGTATT+TGG - chr4.2:18048709-18048728 MS.gene028357:CDS 40.0%
GTTCAATCTGGTGCAACAAT+TGG - chr4.2:18047670-18047689 MS.gene028357:CDS 40.0%
GTTTCTTGACAGAGAAGCAA+TGG - chr4.2:18047870-18047889 MS.gene028357:CDS 40.0%
TGGCCTATGTTTCATGAAGA+TGG - chr4.2:18048408-18048427 MS.gene028357:CDS 40.0%
TTATGACCTTAGCTTCTCCA+AGG + chr4.2:18048860-18048879 None:intergenic 40.0%
TTGGCATCAAGAAAGTGATG+AGG - chr4.2:18048551-18048570 MS.gene028357:CDS 40.0%
TTTCCATGTCTGTGTGGAAA+TGG + chr4.2:18048504-18048523 None:intergenic 40.0%
! AAGAGGTTTAGGTGTTGTGT+TGG + chr4.2:18047452-18047471 None:intergenic 40.0%
! GTTTCAAGTGGTTCGTCTTT+CGG + chr4.2:18048294-18048313 None:intergenic 40.0%
! TGAGTAAGAGGAATTGGCTT+TGG + chr4.2:18047389-18047408 None:intergenic 40.0%
!! CAATGGGTGAGGATTTGTTT+TGG - chr4.2:18047887-18047906 MS.gene028357:CDS 40.0%
!! CTCTGAAGTTTGTGAGATCA+AGG + chr4.2:18047615-18047634 None:intergenic 40.0%
!! GAACGTTGGTTCGTAAATTC+GGG - chr4.2:18047797-18047816 MS.gene028357:CDS 40.0%
!! GGAACGTTGGTTCGTAAATT+CGG - chr4.2:18047796-18047815 MS.gene028357:CDS 40.0%
!! TTTCAAGCCTTGTTTCTTGG+AGG - chr4.2:18048156-18048175 MS.gene028357:CDS 40.0%
!!! TTGTTTTGGGCTATTAGAGG+TGG - chr4.2:18047901-18047920 MS.gene028357:CDS 40.0%
AGAACAGCTTGGGTTCAATC+TGG - chr4.2:18047658-18047677 MS.gene028357:CDS 45.0%
ATAGTAGGACATTCACCACC+CGG + chr4.2:18047742-18047761 None:intergenic 45.0%
CAAGAGAAGTTTCCTGAGCT+TGG - chr4.2:18048204-18048223 MS.gene028357:CDS 45.0%
CGTCTTTCGGAAACCCATAA+AGG + chr4.2:18048281-18048300 None:intergenic 45.0%
CTGTTGAGCAACGTTTCAAG+TGG + chr4.2:18048306-18048325 None:intergenic 45.0%
GAAGTTTCCTGAGCTTGGTT+TGG - chr4.2:18048209-18048228 MS.gene028357:CDS 45.0%
GAATCTGCAGGCTGTGAATT+TGG + chr4.2:18047528-18047547 None:intergenic 45.0%
GGTGGTGAATGTCCTACTAT+AGG - chr4.2:18047742-18047761 MS.gene028357:CDS 45.0%
TCTCTAACCAAACCAAGCTC+AGG + chr4.2:18048219-18048238 None:intergenic 45.0%
TGTCCACCAACACCTATAGT+AGG + chr4.2:18047757-18047776 None:intergenic 45.0%
TGTCCCTTGAACACATGAGA+AGG + chr4.2:18048828-18048847 None:intergenic 45.0%
! CACCCGGAAAACCAAGATTT+TGG + chr4.2:18047726-18047745 None:intergenic 45.0%
! TTTTGGGCTATTAGAGGTGG+TGG - chr4.2:18047904-18047923 MS.gene028357:CDS 45.0%
!! CAAAATCTTGGTTTTCCGGG+TGG - chr4.2:18047724-18047743 MS.gene028357:CDS 45.0%
!! GGAGATGAGTTGGGTTGAAT+CGG - chr4.2:18048248-18048267 MS.gene028357:CDS 45.0%
!! TGTCCTACTATAGGTGTTGG+TGG - chr4.2:18047751-18047770 MS.gene028357:CDS 45.0%
AAGTGGTGGCCATGACTTTG+AGG - chr4.2:18047555-18047574 MS.gene028357:CDS 50.0%
AGGACCTACCCTCAAAGTCA+TGG + chr4.2:18047567-18047586 None:intergenic 50.0%
AGTGGTGGCCATGACTTTGA+GGG - chr4.2:18047556-18047575 MS.gene028357:CDS 50.0%
CAAAGTCATGGCCACCACTT+CGG + chr4.2:18047555-18047574 None:intergenic 50.0%
CAACAGAACCCTAGCTGCAA+AGG - chr4.2:18048320-18048339 MS.gene028357:CDS 50.0%
CACTTCGGATTCGAATCTGC+AGG + chr4.2:18047540-18047559 None:intergenic 50.0%
CAGATTCGAATCCGAAGTGG+TGG - chr4.2:18047541-18047560 MS.gene028357:CDS 50.0%
CTGCAGATTCGAATCCGAAG+TGG - chr4.2:18047538-18047557 MS.gene028357:CDS 50.0%
TGACAGAGAAGCAATGGGTG+AGG - chr4.2:18047876-18047895 MS.gene028357:CDS 50.0%
! AGATGGTGCCAAAGATGCCA+TGG - chr4.2:18048425-18048444 MS.gene028357:CDS 50.0%
! GTGTTGGTGGACACATCAGT+GGG - chr4.2:18047764-18047783 MS.gene028357:CDS 50.0%
! TGTTGGTGGACACATCAGTG+GGG - chr4.2:18047765-18047784 MS.gene028357:CDS 50.0%
! GTGGCCATGACTTTGAGGGT+AGG - chr4.2:18047560-18047579 MS.gene028357:CDS 55.0%
! GTTGGTGGACACATCAGTGG+GGG - chr4.2:18047766-18047785 MS.gene028357:CDS 55.0%
! TGGGCTATTAGAGGTGGTGG+AGG - chr4.2:18047907-18047926 MS.gene028357:CDS 55.0%
!! GGTGGTGGAGGAGCAAGTTT+CGG - chr4.2:18047919-18047938 MS.gene028357:CDS 55.0%
!! GGTGTTGGTGGACACATCAG+TGG - chr4.2:18047763-18047782 MS.gene028357:CDS 55.0%
CACATCAGTGGGGGCGGCTA+TGG - chr4.2:18047775-18047794 MS.gene028357:CDS 65.0%
GGTGGACACATCAGTGGGGG+CGG - chr4.2:18047769-18047788 MS.gene028357:CDS 65.0%
TGGGGGCGGCTATGGAACGT+TGG - chr4.2:18047783-18047802 MS.gene028357:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 18047229 18048887 18047229 ID=MS.gene028357
chr4.2 mRNA 18047229 18048887 18047229 ID=MS.gene028357.t1;Parent=MS.gene028357
chr4.2 exon 18047229 18048887 18047229 ID=MS.gene028357.t1.exon1;Parent=MS.gene028357.t1
chr4.2 CDS 18047229 18048887 18047229 ID=cds.MS.gene028357.t1;Parent=MS.gene028357.t1
Gene Sequence

>MS.gene028357

ATGATGCCTCTAAACTTATATTTTACTATTGTACTAATTGCTCTCTTATTTACATATACATCTTCAGCAATTGATACTAGTACACATGAAGAAAATTTCCTTCAGTGCCTCTATAGTTATTCACATAACTCAACTTCAATCTCTGAAGTTGTGTACACCAAAGCCAATTCCTCTTACTCATCAATACTCCAATTTACAACTCAAAATCTCAGATTTGCATCCAACACAACACCTAAACCTCTTGTCATTATCACACCTAAACAGATTTCCCAAATTCAAACAACCATAATCTGTTCCCAAATTCACAGCCTGCAGATTCGAATCCGAAGTGGTGGCCATGACTTTGAGGGTAGGTCCTATGTTTCTGAAGTTCTGTTTATCATCCTTGATCTCACAAACTTCAGAGAAATTGAAGTAGATGTAGAAAACAGAACAGCTTGGGTTCAATCTGGTGCAACAATTGGTGAACTTTACTACACAATTAACCGAAAAAACCAAAATCTTGGTTTTCCGGGTGGTGAATGTCCTACTATAGGTGTTGGTGGACACATCAGTGGGGGCGGCTATGGAACGTTGGTTCGTAAATTCGGGCTTGCAGCTGATAATATAATTGATGCTAACATAATTGATGTGAAGGGTAGGTTTCTTGACAGAGAAGCAATGGGTGAGGATTTGTTTTGGGCTATTAGAGGTGGTGGAGGAGCAAGTTTCGGAGTCATAATTTCATGGAAGATTAAACTTGTTCATGTTCCATCAACTGTGACAGTCTTTAATGTTCCAAAAACATTGGAACAAAATGCAACAAAGCTTATTCACAAGTGGCAGTTTTTGACAAGTAGAATTGATGAAAACTTAGAAATTACTGTTATCTTACAAAGGGTAAATTCACGTATAAAGGGGAAGTCAAAGTCAACAGTACAAGCTATATTTCAAGCCTTGTTTCTTGGAGGTGTAGATAAGCTCATACACTTGATGCAAGAGAAGTTTCCTGAGCTTGGTTTGGTTAGAGAAGATTGTGTGGAGATGAGTTGGGTTGAATCGGTTCTTTACCTTTATGGGTTTCCGAAAGACGAACCACTTGAAACGTTGCTCAACAGAACCCTAGCTGCAAAGGATATTTACAAAGTAAAATCTGATTTTGTCAAAATTCCCATTCCTGAAATTGGATTAGAAGGAATATGGCCTATGTTTCATGAAGATGGTGCCAAAGATGCCATGGTGATATTTTTTCCTTATGGTGGCATAATGGATAATATTTCAGAATCTGAAATTCCATTTCCACACAGACATGGAAATTTATATCAAATTTATTACTCAGTTCATTGGCATCAAGAAAGTGATGAGGTCGAAAAAATGAAAATGAATTGGATTGGAAGACTGTATAGTTATATGGAACCTTTTGTTTCAAAATCTCCAAGAGCTGCATATATTAATTATAGAGACCTTGATATTGGGATGAATAATATTAATGGATACACAAGCTACAAGCAAGCTAGTATTTGGGGTGTTAAGTACTTCAAGAACAACTTCAAAAGATTGGTAAAAGTGAAGACTAAAGTTGATCCTCTAAACTTCTTCAGAAATGAACAGAGTATACCTTCTCATGTGTTCAAGGGACATAAAGAAATCCTTGGAGAAGCTAAGGTCATAATAGAATAA
Protein sequence

>MS.gene028357.t1

MMPLNLYFTIVLIALLFTYTSSAIDTSTHEENFLQCLYSYSHNSTSISEVVYTKANSSYSSILQFTTQNLRFASNTTPKPLVIITPKQISQIQTTIICSQIHSLQIRIRSGGHDFEGRSYVSEVLFIILDLTNFREIEVDVENRTAWVQSGATIGELYYTINRKNQNLGFPGGECPTIGVGGHISGGGYGTLVRKFGLAADNIIDANIIDVKGRFLDREAMGEDLFWAIRGGGGASFGVIISWKIKLVHVPSTVTVFNVPKTLEQNATKLIHKWQFLTSRIDENLEITVILQRVNSRIKGKSKSTVQAIFQALFLGGVDKLIHLMQEKFPELGLVREDCVEMSWVESVLYLYGFPKDEPLETLLNRTLAAKDIYKVKSDFVKIPIPEIGLEGIWPMFHEDGAKDAMVIFFPYGGIMDNISESEIPFPHRHGNLYQIYYSVHWHQESDEVEKMKMNWIGRLYSYMEPFVSKSPRAAYINYRDLDIGMNNINGYTSYKQASIWGVKYFKNNFKRLVKVKTKVDPLNFFRNEQSIPSHVFKGHKEILGEAKVIIE