AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028353

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028353.t1 MTR_4g094492 95.387 542 25 0 1 542 1 542 0.0 1050
MS.gene028353.t1 MTR_4g094488 79.853 546 103 3 1 542 1 543 0.0 874
MS.gene028353.t1 MTR_4g094495 79.964 549 100 5 1 542 1 546 0.0 872
MS.gene028353.t1 MTR_4g094478 78.479 539 111 2 1 537 1 536 0.0 859
MS.gene028353.t1 MTR_4g094480 77.206 544 119 2 1 542 1 541 0.0 852
MS.gene028353.t1 MTR_4g094418 71.005 438 119 3 104 536 1 435 0.0 651
MS.gene028353.t1 MTR_2g031560 51.992 527 242 5 13 536 5 523 0.0 573
MS.gene028353.t1 MTR_2g031390 52.425 536 239 8 5 536 6 529 0.0 571
MS.gene028353.t1 MTR_3g009880 55.682 528 220 9 12 536 4 520 0.0 563
MS.gene028353.t1 MTR_3g009760 54.291 536 225 9 6 536 2 522 0.0 561
MS.gene028353.t1 MTR_3g009820 53.645 535 230 8 6 536 2 522 0.0 555
MS.gene028353.t1 MTR_2g031420 53.558 534 235 6 6 536 4 527 0.0 551
MS.gene028353.t1 MTR_4g094520 51.887 530 245 6 10 536 10 532 0.0 547
MS.gene028353.t1 MTR_4g094498 55.777 502 214 5 35 536 41 534 0.0 547
MS.gene028353.t1 MTR_2g031460 53.933 534 233 6 6 536 4 527 0.0 546
MS.gene028353.t1 MTR_2g031590 52.134 539 247 5 2 536 1 532 0.0 545
MS.gene028353.t1 MTR_4g094518 54.386 513 218 8 30 536 28 530 0.0 532
MS.gene028353.t1 MTR_2g031490 50.926 540 252 9 3 536 6 538 7.38e-179 515
MS.gene028353.t1 MTR_4g091150 51.765 510 236 4 31 536 37 540 6.75e-177 510
MS.gene028353.t1 MTR_2g031510 49.711 519 250 6 26 540 33 544 2.01e-172 498
MS.gene028353.t1 MTR_4g057990 49.811 528 255 7 8 535 4 521 4.58e-171 494
MS.gene028353.t1 MTR_4g094515 49.254 536 263 5 7 539 624 1153 3.67e-169 509
MS.gene028353.t1 MTR_4g094515 50.394 508 241 7 32 535 39 539 1.20e-166 503
MS.gene028353.t1 MTR_6g017205 48.204 529 261 5 10 537 11 527 4.07e-169 490
MS.gene028353.t1 MTR_4g091200 47.736 530 263 5 7 535 9 525 1.19e-168 488
MS.gene028353.t1 MTR_4g088355 49.119 511 255 3 32 541 32 538 6.02e-168 487
MS.gene028353.t1 MTR_4g091190 48.924 511 252 5 32 541 31 533 3.25e-165 480
MS.gene028353.t1 MTR_4g091170 46.983 464 222 3 73 535 101 541 7.34e-154 452
MS.gene028353.t1 MTR_2g023590 48.401 469 234 4 68 535 4 465 1.07e-147 433
MS.gene028353.t1 MTR_1g076830 43.451 481 262 7 57 533 58 532 2.41e-125 378
MS.gene028353.t1 MTR_2g031600 58.537 246 100 1 1 246 1 244 2.99e-87 275
MS.gene028353.t1 MTR_2g031600 51.572 159 74 2 378 536 245 400 3.78e-50 177
MS.gene028353.t1 MTR_3g009850 59.130 230 87 5 308 536 5 228 9.83e-85 263
MS.gene028353.t1 MTR_2g084370 49.550 111 34 2 128 238 1 89 1.75e-31 117
MS.gene028353.t1 MTR_2g084405 55.000 80 36 0 128 207 1 80 4.21e-21 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028353.t1 AT5G44400 50.093 539 250 9 10 537 7 537 0.0 526
MS.gene028353.t1 AT5G44440 50.464 539 249 7 2 534 1 527 0.0 523
MS.gene028353.t1 AT5G44440 50.464 539 249 7 2 534 71 597 0.0 522
MS.gene028353.t1 AT4G20820 49.257 538 254 6 2 534 1 524 0.0 522
MS.gene028353.t1 AT2G34790 48.948 523 249 9 21 537 21 531 4.22e-180 518
MS.gene028353.t1 AT5G44360 48.807 545 257 10 1 537 17 547 1.11e-174 504
MS.gene028353.t1 AT5G44410 49.721 537 247 8 4 534 8 527 1.18e-174 504
MS.gene028353.t1 AT5G44360 48.807 545 257 10 1 537 1 531 1.48e-174 503
MS.gene028353.t1 AT5G44390 47.048 542 272 9 3 536 6 540 5.88e-174 502
MS.gene028353.t1 AT1G30760 49.031 516 243 9 27 535 29 531 5.65e-171 494
MS.gene028353.t1 AT1G30760 49.031 516 243 9 27 535 47 549 7.93e-171 495
MS.gene028353.t1 AT5G44380 49.815 540 259 7 2 536 7 539 2.08e-168 488
MS.gene028353.t1 AT4G20860 49.126 515 243 10 30 536 26 529 2.41e-168 488
MS.gene028353.t1 AT5G44380 49.815 540 259 7 2 536 47 579 4.62e-168 489
MS.gene028353.t1 AT1G30730 48.015 529 261 6 8 534 7 523 5.00e-166 481
MS.gene028353.t1 AT1G11770 48.828 512 250 7 28 536 27 529 9.24e-166 481
MS.gene028353.t1 AT1G30700 47.932 532 264 6 8 536 5 526 7.34e-164 476
MS.gene028353.t1 AT1G26420 47.015 536 266 9 4 534 1 523 3.37e-163 474
MS.gene028353.t1 AT1G26380 47.378 534 264 8 11 539 7 528 1.10e-161 471
MS.gene028353.t1 AT4G20840 46.394 513 263 7 31 540 36 539 1.55e-159 466
MS.gene028353.t1 AT1G30720 49.206 504 246 5 33 534 29 524 2.93e-158 462
MS.gene028353.t1 AT1G26400 45.572 542 265 9 1 533 1 521 1.14e-156 457
MS.gene028353.t1 AT1G30710 45.996 537 263 11 8 536 11 528 1.61e-156 457
MS.gene028353.t1 AT1G26410 47.628 506 254 8 33 536 53 549 3.06e-156 457
MS.gene028353.t1 AT1G34575 47.767 515 248 10 30 539 29 527 3.37e-156 456
MS.gene028353.t1 AT1G26390 47.921 505 254 5 32 534 28 525 2.90e-155 454
MS.gene028353.t1 AT4G20800 46.230 504 264 4 31 534 27 523 1.54e-154 452
MS.gene028353.t1 AT4G20830 47.104 518 262 7 26 540 32 540 4.26e-152 446
MS.gene028353.t1 AT1G01980 46.402 528 265 11 20 539 20 537 1.65e-151 445
MS.gene028353.t1 AT4G20830 47.276 514 259 7 26 536 32 536 3.09e-151 445
MS.gene028353.t1 AT1G30740 46.182 537 270 10 12 538 3 530 9.84e-149 437
MS.gene028353.t1 AT1G30740 45.996 537 271 10 12 538 6 533 1.12e-148 437
MS.gene028353.t1 AT2G34810 44.118 510 278 4 31 536 33 539 5.47e-141 418

Find 115 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCTGGAGGCCATGATTT+TGG 0.130838 4.2:+18010286 None:intergenic
AAATTATGGCTGTTTGAATA+TGG 0.187785 4.2:+18010313 None:intergenic
GCTACAAGCAAGCTAGTATT+TGG 0.235073 4.2:-18009099 MS.gene028353:CDS
CGCCTTTCGGAAATTGAAAA+AGG 0.237346 4.2:+18009539 None:intergenic
AAAACTCCTATTCCTGAAAA+TGG 0.251375 4.2:-18009436 MS.gene028353:CDS
CAATGGGTGAAGATTTGTTT+TGG 0.263104 4.2:-18009924 MS.gene028353:CDS
GGTGGTGGAGGAGCAAGTTT+TGG 0.291186 4.2:-18009892 MS.gene028353:CDS
ATATTTCAATCCTTGTTTCT+TGG 0.298323 4.2:-18009664 MS.gene028353:CDS
GTTTCAAAGTCTCCAAGAAT+TGG 0.300797 4.2:-18009178 MS.gene028353:CDS
TTTGCTTTGTAAATAAATCT+TGG 0.313472 4.2:+18009472 None:intergenic
GTTTCCTTATGGTGGAATAA+TGG 0.315442 4.2:-18009353 MS.gene028353:CDS
CCTTTGAAAGACAATATTGA+TGG 0.321417 4.2:+18009726 None:intergenic
AATCAACCTGGTAATGAATA+TGG 0.323880 4.2:+18009278 None:intergenic
TACTGGGGAGTAAGAGGAAT+TGG 0.347621 4.2:+18010419 None:intergenic
ATTCCTGAAAATGGATTAGA+AGG 0.350473 4.2:-18009427 MS.gene028353:CDS
CCCCACTACGGGTTCGAATC+TGG 0.361159 4.2:+18010271 None:intergenic
TAGTTGATATACCCAATTCT+TGG 0.362017 4.2:+18009166 None:intergenic
TGAGTTGTATATTTGAGTAC+TGG 0.362400 4.2:+18010402 None:intergenic
CATTGATCTCATAAACTTCA+AGG 0.362548 4.2:-18010199 MS.gene028353:CDS
ATATTCATTACCAGGTTGAT+TGG 0.363341 4.2:-18009276 MS.gene028353:CDS
TTGCTTTGTAAATAAATCTT+GGG 0.367450 4.2:+18009473 None:intergenic
ATTAATTTATTTGTGTCCCT+TGG 0.367735 4.2:+18008970 None:intergenic
AACTATAGAGACCTTGATAT+TGG 0.379359 4.2:-18009148 MS.gene028353:CDS
CAAGAACAACTTCAAAAGAT+TGG 0.382060 4.2:-18009062 MS.gene028353:CDS
GGAACCTTAGTGCGTAAATA+TGG 0.383768 4.2:-18010015 MS.gene028353:CDS
CCATATCATCATTGCACCTT+TGG 0.387821 4.2:+18009375 None:intergenic
CTTGGAGACTTTGAAACAAA+AGG 0.388823 4.2:+18009184 None:intergenic
CACTTCAGTGGTGGCGGCTA+TGG 0.388986 4.2:-18010036 MS.gene028353:CDS
ATAGACAAATATGAGCTTAG+AGG 0.392833 4.2:+18010576 None:intergenic
CAGCTGGGAAACCGAGATTT+CGG 0.397206 4.2:+18010088 None:intergenic
CTACAAGCAAGCTAGTATTT+GGG 0.397390 4.2:-18009098 MS.gene028353:CDS
CCAAAGGTGCAATGATGATA+TGG 0.399938 4.2:-18009375 MS.gene028353:CDS
GTAAACACCGTCACAGTTGA+TGG 0.407633 4.2:+18009832 None:intergenic
AGATAAACTCATTCCCTTGA+TGG 0.407746 4.2:-18009635 MS.gene028353:CDS
AATTATGGCTGTTTGAATAT+GGG 0.408415 4.2:+18010314 None:intergenic
TTTCAAAGTCTCCAAGAATT+GGG 0.412921 4.2:-18009177 MS.gene028353:CDS
ATGAGATCAATGACAACAAA+TGG 0.413992 4.2:+18010210 None:intergenic
AAAATGGATTAGAAGGAATA+TGG 0.414702 4.2:-18009420 MS.gene028353:CDS
TTAATTTATTTGTGTCCCTT+GGG 0.415606 4.2:+18008971 None:intergenic
AAAATTGTATTGAAATGAGT+TGG 0.420053 4.2:-18009579 MS.gene028353:CDS
GGAGTAAGAGGAATTGGTTT+TGG 0.421410 4.2:+18010425 None:intergenic
ACTTCAGGTAATGCGCCTTT+CGG 0.422852 4.2:+18009526 None:intergenic
TTTCAATCCTTGTTTCTTGG+AGG 0.424294 4.2:-18009661 MS.gene028353:CDS
GTGATGATGACAAGTGGTTT+AGG 0.431669 4.2:+18010351 None:intergenic
ATGATGATATGGTTTCCTTA+TGG 0.438370 4.2:-18009364 MS.gene028353:CDS
ATTCCATTTCCTCATAGAAA+AGG 0.440912 4.2:-18009310 MS.gene028353:CDS
GCTGGTGCTTGTCCTACAAT+AGG 0.442267 4.2:-18010069 MS.gene028353:CDS
AAATGGAACTTCTGAAACAT+AGG 0.442493 4.2:+18010227 None:intergenic
TGAAATGAGTTGGATTGAAT+CGG 0.452927 4.2:-18009569 MS.gene028353:CDS
GTTCTGTTAAGCAACACTTC+AGG 0.454581 4.2:+18009511 None:intergenic
CTACAAAGCTTGTTCATAAG+TGG 0.467175 4.2:-18009783 MS.gene028353:CDS
TCCAGATTCGAACCCGTAGT+GGG 0.475163 4.2:-18010272 MS.gene028353:CDS
TTACCAGGTTGATTGGCAAC+AGG 0.475690 4.2:-18009269 MS.gene028353:CDS
TTTGAGTACTGGGGAGTAAG+AGG 0.476425 4.2:+18010413 None:intergenic
ATAATTTGTTCCCAAAATCA+TGG 0.478899 4.2:-18010297 MS.gene028353:CDS
AAAGTTTAGAGGATCAACTT+TGG 0.482938 4.2:+18009027 None:intergenic
TGTAGAAAGCAAAACTGCTT+GGG 0.483507 4.2:-18010163 MS.gene028353:CDS
TGGTCTTTGTTTCATGAAGA+TGG 0.483871 4.2:-18009400 MS.gene028353:CDS
GAAGAAAAGTTTCCTGAGTT+GGG 0.486919 4.2:-18009613 MS.gene028353:CDS
CGAAATCTCGGTTTCCCAGC+TGG 0.487820 4.2:-18010087 MS.gene028353:CDS
TGTCCACCAACACCTATTGT+AGG 0.487897 4.2:+18010057 None:intergenic
AAAACTGCTTGGGTTCAGTC+TGG 0.489702 4.2:-18010153 MS.gene028353:CDS
TGGGCTATTAGAGGTGGTGG+AGG 0.490480 4.2:-18009904 MS.gene028353:CDS
ATTGGTGTGAATAACATTGA+TGG 0.497447 4.2:-18009130 MS.gene028353:CDS
GAGTTGTATATTTGAGTACT+GGG 0.500108 4.2:+18010403 None:intergenic
GTTTACTGTTGCAAAAGCAT+TGG 0.502433 4.2:-18009815 MS.gene028353:CDS
GTATCCATTATTCCACCATA+AGG 0.507512 4.2:+18009349 None:intergenic
ATTGTAGGACAAGCACCAGC+TGG 0.507999 4.2:+18010072 None:intergenic
CTTCCTGTTGCCAATCAACC+TGG 0.513010 4.2:+18009266 None:intergenic
TGCTCACATTATTGATGTGA+AGG 0.514863 4.2:-18009968 MS.gene028353:CDS
TAGACCATATTTACGCACTA+AGG 0.515862 4.2:+18010011 None:intergenic
TGTCCCTTGGGCACAAGAGA+AGG 0.516026 4.2:+18008983 None:intergenic
ATGTAGAAAGCAAAACTGCT+TGG 0.516128 4.2:-18010164 MS.gene028353:CDS
GGAAGAAAAGTTTCCTGAGT+TGG 0.517366 4.2:-18009614 MS.gene028353:CDS
ACATTATTGATGTGAAGGGT+AGG 0.525031 4.2:-18009963 MS.gene028353:CDS
TCTCTAACCACACCCAACTC+AGG 0.530976 4.2:+18009601 None:intergenic
GTTTCTTGACAGAGAAGCAA+TGG 0.534469 4.2:-18009941 MS.gene028353:CDS
AATAACTAGAAAGACATTGA+AGG 0.537999 4.2:+18010484 None:intergenic
GTTCAGTCTGGTGCAACACT+TGG 0.538464 4.2:-18010141 MS.gene028353:CDS
TGTTATTCACACCAATATCA+AGG 0.539812 4.2:+18009137 None:intergenic
CTCCAGATTCGAACCCGTAG+TGG 0.540664 4.2:-18010273 MS.gene028353:CDS
TTTATACCATATTCATTACC+AGG 0.548049 4.2:-18009284 MS.gene028353:CDS
CCATCAATATTGTCTTTCAA+AGG 0.551890 4.2:-18009726 MS.gene028353:CDS
AAAGTTTCCTGAGTTGGGTG+TGG 0.552427 4.2:-18009608 MS.gene028353:CDS
TATACCTTCTCTTGTGCCCA+AGG 0.564129 4.2:-18008987 MS.gene028353:CDS
TTTCTTGACAGAGAAGCAAT+GGG 0.565816 4.2:-18009940 MS.gene028353:CDS
TGTTCATAAGTGGCAGTATG+TGG 0.577932 4.2:-18009773 MS.gene028353:CDS
ATGATATGGTTTCCTTATGG+TGG 0.582909 4.2:-18009361 MS.gene028353:CDS
ATGGCTGTTTGAATATGGGA+AGG 0.583461 4.2:+18010318 None:intergenic
ATCTACACCTCCAAGAAACA+AGG 0.586811 4.2:+18009654 None:intergenic
AAGTGGTTTAGGTGTTGTGT+AGG 0.592233 4.2:+18010362 None:intergenic
TGTCCTACAATAGGTGTTGG+TGG 0.592774 4.2:-18010060 MS.gene028353:CDS
CCAGATTCGAACCCGTAGTG+GGG 0.593132 4.2:-18010271 MS.gene028353:CDS
GCTTGTCCTACAATAGGTGT+TGG 0.602006 4.2:-18010063 MS.gene028353:CDS
TACAAGCAAGCTAGTATTTG+GGG 0.602138 4.2:-18009097 MS.gene028353:CDS
TTGTAGGACAAGCACCAGCT+GGG 0.603228 4.2:+18010073 None:intergenic
TGAATATGGGAAGGTTCTAG+AGG 0.607797 4.2:+18010327 None:intergenic
CAGGTTGATTGGCAACAGGA+AGG 0.608073 4.2:-18009265 MS.gene028353:CDS
AGGATAGACCCTCAAAGTCA+TGG 0.608222 4.2:+18010247 None:intergenic
CAGATTCGAACCCGTAGTGG+GGG 0.608743 4.2:-18010270 MS.gene028353:CDS
GCAACAGGAAGGTGATGAGG+TGG 0.620727 4.2:-18009254 MS.gene028353:CDS
GCTCACATTATTGATGTGAA+GGG 0.621396 4.2:-18009967 MS.gene028353:CDS
AGTTGTATATTTGAGTACTG+GGG 0.622067 4.2:+18010404 None:intergenic
GGTGGACACTTCAGTGGTGG+CGG 0.622668 4.2:-18010042 MS.gene028353:CDS
TCAAGTTCCATCAACTGTGA+CGG 0.625682 4.2:-18009839 MS.gene028353:CDS
TTTCATGAAGATGGTGCCAA+AGG 0.627110 4.2:-18009391 MS.gene028353:CDS
GTTGGTGGACACTTCAGTGG+TGG 0.638376 4.2:-18010045 MS.gene028353:CDS
ATACCTTCTCTTGTGCCCAA+GGG 0.645386 4.2:-18008986 MS.gene028353:CDS
CACTACGGGTTCGAATCTGG+AGG 0.666507 4.2:+18010274 None:intergenic
GGTGTTGGTGGACACTTCAG+TGG 0.668243 4.2:-18010048 MS.gene028353:CDS
AGAGGTGTGATGATGACAAG+TGG 0.700893 4.2:+18010345 None:intergenic
AGCATCGATCACATTATCCG+CGG 0.701535 4.2:+18009987 None:intergenic
AGTGTTGCTTAACAGAACAC+TGG 0.704218 4.2:-18009506 MS.gene028353:CDS
TTGGCAACAGGAAGGTGATG+AGG 0.705230 4.2:-18009257 MS.gene028353:CDS
GCGTAAATATGGTCTAGCCG+CGG 0.716514 4.2:-18010004 MS.gene028353:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAAATTTATAATTACA+TGG - chr4.2:18010349-18010368 MS.gene028353:CDS 10.0%
!! AAAATTGTATTGAAATGAGT+TGG - chr4.2:18009979-18009998 MS.gene028353:CDS 20.0%
!! AGGATAAATTCAAGTAAAAA+AGG - chr4.2:18009852-18009871 MS.gene028353:CDS 20.0%
!! TTGCTTTGTAAATAAATCTT+GGG + chr4.2:18010088-18010107 None:intergenic 20.0%
!! TTTGCTTTGTAAATAAATCT+TGG + chr4.2:18010089-18010108 None:intergenic 20.0%
!!! TATAAATTTCCTTTTCTATG+AGG + chr4.2:18010260-18010279 None:intergenic 20.0%
! AAATTATGGCTGTTTGAATA+TGG + chr4.2:18009248-18009267 None:intergenic 25.0%
! AATAACTAGAAAGACATTGA+AGG + chr4.2:18009077-18009096 None:intergenic 25.0%
! AATTATGGCTGTTTGAATAT+GGG + chr4.2:18009247-18009266 None:intergenic 25.0%
! TTTATACCATATTCATTACC+AGG - chr4.2:18010274-18010293 MS.gene028353:CDS 25.0%
!! ATATTTCAATCCTTGTTTCT+TGG - chr4.2:18009894-18009913 MS.gene028353:CDS 25.0%
!! TCATTTCTGAAAAAGTTTAG+AGG + chr4.2:18010545-18010564 None:intergenic 25.0%
!!! AAAATGGATTAGAAGGAATA+TGG - chr4.2:18010138-18010157 MS.gene028353:CDS 25.0%
!!! ATAATTTGTTCCCAAAATCA+TGG - chr4.2:18009261-18009280 MS.gene028353:CDS 25.0%
!!! ATGATTTTGGGAACAAATTA+TGG + chr4.2:18009262-18009281 None:intergenic 25.0%
AAAACTCCTATTCCTGAAAA+TGG - chr4.2:18010122-18010141 MS.gene028353:CDS 30.0%
AAAGTTTAGAGGATCAACTT+TGG + chr4.2:18010534-18010553 None:intergenic 30.0%
AACTATAGAGACCTTGATAT+TGG - chr4.2:18010410-18010429 MS.gene028353:CDS 30.0%
ATAGACAAATATGAGCTTAG+AGG + chr4.2:18008985-18009004 None:intergenic 30.0%
ATGAGATCAATGACAACAAA+TGG + chr4.2:18009351-18009370 None:intergenic 30.0%
ATGATGATATGGTTTCCTTA+TGG - chr4.2:18010194-18010213 MS.gene028353:CDS 30.0%
ATTCCATTTCCTCATAGAAA+AGG - chr4.2:18010248-18010267 MS.gene028353:CDS 30.0%
ATTGGTGTGAATAACATTGA+TGG - chr4.2:18010428-18010447 MS.gene028353:CDS 30.0%
CAAGAACAACTTCAAAAGAT+TGG - chr4.2:18010496-18010515 MS.gene028353:CDS 30.0%
CATTGATCTCATAAACTTCA+AGG - chr4.2:18009359-18009378 MS.gene028353:CDS 30.0%
CCATCAATATTGTCTTTCAA+AGG - chr4.2:18009832-18009851 MS.gene028353:CDS 30.0%
GAGTTGTATATTTGAGTACT+GGG + chr4.2:18009158-18009177 None:intergenic 30.0%
TGAGTTGTATATTTGAGTAC+TGG + chr4.2:18009159-18009178 None:intergenic 30.0%
TGGAAAAACTGCACATTAAT+TGG - chr4.2:18010324-18010343 MS.gene028353:CDS 30.0%
TGTTATTCACACCAATATCA+AGG + chr4.2:18010424-18010443 None:intergenic 30.0%
TTTCAAAGTCTCCAAGAATT+GGG - chr4.2:18010381-18010400 MS.gene028353:CDS 30.0%
! AATCAACCTGGTAATGAATA+TGG + chr4.2:18010283-18010302 None:intergenic 30.0%
! AGTTGTATATTTGAGTACTG+GGG + chr4.2:18009157-18009176 None:intergenic 30.0%
! ATTCCTTCTAATCCATTTTC+AGG + chr4.2:18010137-18010156 None:intergenic 30.0%
! CCTTTGAAAGACAATATTGA+TGG + chr4.2:18009835-18009854 None:intergenic 30.0%
! TAGTTGATATACCCAATTCT+TGG + chr4.2:18010395-18010414 None:intergenic 30.0%
! TGAAATGAGTTGGATTGAAT+CGG - chr4.2:18009989-18010008 MS.gene028353:CDS 30.0%
! TTTCCTTTTCTATGAGGAAA+TGG + chr4.2:18010254-18010273 None:intergenic 30.0%
!! AAATGGAACTTCTGAAACAT+AGG + chr4.2:18009334-18009353 None:intergenic 30.0%
!! AATGGGTGAAGATTTGTTTT+GGG - chr4.2:18009635-18009654 MS.gene028353:CDS 30.0%
!! ATATTCATTACCAGGTTGAT+TGG - chr4.2:18010282-18010301 MS.gene028353:CDS 30.0%
!! ATTCCTGAAAATGGATTAGA+AGG - chr4.2:18010131-18010150 MS.gene028353:CDS 30.0%
!! TCTAATCCATTTTCAGGAAT+AGG + chr4.2:18010131-18010150 None:intergenic 30.0%
!!! GTTTTGGAGTCATAATTTCA+TGG - chr4.2:18009682-18009701 MS.gene028353:CDS 30.0%
!!! TACCTTTTTCAATTTCCGAA+AGG - chr4.2:18010017-18010036 MS.gene028353:CDS 30.0%
ACATTATTGATGTGAAGGGT+AGG - chr4.2:18009595-18009614 MS.gene028353:CDS 35.0%
AGATAAACTCATTCCCTTGA+TGG - chr4.2:18009923-18009942 MS.gene028353:CDS 35.0%
AGCAAAAAAAGCCGAAATCT+CGG - chr4.2:18009459-18009478 MS.gene028353:CDS 35.0%
ATGATATGGTTTCCTTATGG+TGG - chr4.2:18010197-18010216 MS.gene028353:CDS 35.0%
ATGTAGAAAGCAAAACTGCT+TGG - chr4.2:18009394-18009413 MS.gene028353:CDS 35.0%
CTACAAGCAAGCTAGTATTT+GGG - chr4.2:18010460-18010479 MS.gene028353:CDS 35.0%
GAAGAAAAGTTTCCTGAGTT+GGG - chr4.2:18009945-18009964 MS.gene028353:CDS 35.0%
GCTCACATTATTGATGTGAA+GGG - chr4.2:18009591-18009610 MS.gene028353:CDS 35.0%
GTATCCATTATTCCACCATA+AGG + chr4.2:18010212-18010231 None:intergenic 35.0%
GTTTCAAAGTCTCCAAGAAT+TGG - chr4.2:18010380-18010399 MS.gene028353:CDS 35.0%
TACAAGCAAGCTAGTATTTG+GGG - chr4.2:18010461-18010480 MS.gene028353:CDS 35.0%
TAGACCATATTTACGCACTA+AGG + chr4.2:18009550-18009569 None:intergenic 35.0%
TGCTCACATTATTGATGTGA+AGG - chr4.2:18009590-18009609 MS.gene028353:CDS 35.0%
TGTAGAAAGCAAAACTGCTT+GGG - chr4.2:18009395-18009414 MS.gene028353:CDS 35.0%
TTTCTTGACAGAGAAGCAAT+GGG - chr4.2:18009618-18009637 MS.gene028353:CDS 35.0%
! AGGAAACTTTTCTTCCATCA+AGG + chr4.2:18009940-18009959 None:intergenic 35.0%
! CTACAAAGCTTGTTCATAAG+TGG - chr4.2:18009775-18009794 MS.gene028353:CDS 35.0%
! GGAAACTTTTCTTCCATCAA+GGG + chr4.2:18009939-18009958 None:intergenic 35.0%
! GTTTACTGTTGCAAAAGCAT+TGG - chr4.2:18009743-18009762 MS.gene028353:CDS 35.0%
! GTTTCCTTATGGTGGAATAA+TGG - chr4.2:18010205-18010224 MS.gene028353:CDS 35.0%
! TGGTCTTTGTTTCATGAAGA+TGG - chr4.2:18010158-18010177 MS.gene028353:CDS 35.0%
! TTTCAATCCTTGTTTCTTGG+AGG - chr4.2:18009897-18009916 MS.gene028353:CDS 35.0%
!! CAATGGGTGAAGATTTGTTT+TGG - chr4.2:18009634-18009653 MS.gene028353:CDS 35.0%
!! CTTGGAGACTTTGAAACAAA+AGG + chr4.2:18010377-18010396 None:intergenic 35.0%
!!! GATTTGTTTTGGGCTATTAG+AGG - chr4.2:18009645-18009664 MS.gene028353:CDS 35.0%
ATCTACACCTCCAAGAAACA+AGG + chr4.2:18009907-18009926 None:intergenic 40.0%
ATGGCTGTTTGAATATGGGA+AGG + chr4.2:18009243-18009262 None:intergenic 40.0%
CCATATCATCATTGCACCTT+TGG + chr4.2:18010186-18010205 None:intergenic 40.0%
CGCCTTTCGGAAATTGAAAA+AGG + chr4.2:18010022-18010041 None:intergenic 40.0%
GCTACAAGCAAGCTAGTATT+TGG - chr4.2:18010459-18010478 MS.gene028353:CDS 40.0%
GGAACCTTAGTGCGTAAATA+TGG - chr4.2:18009543-18009562 MS.gene028353:CDS 40.0%
GGAAGAAAAGTTTCCTGAGT+TGG - chr4.2:18009944-18009963 MS.gene028353:CDS 40.0%
GTTCTGTTAAGCAACACTTC+AGG + chr4.2:18010050-18010069 None:intergenic 40.0%
GTTTCTTGACAGAGAAGCAA+TGG - chr4.2:18009617-18009636 MS.gene028353:CDS 40.0%
TCAAGTTCCATCAACTGTGA+CGG - chr4.2:18009719-18009738 MS.gene028353:CDS 40.0%
TGTTCATAAGTGGCAGTATG+TGG - chr4.2:18009785-18009804 MS.gene028353:CDS 40.0%
! AAGTGGTTTAGGTGTTGTGT+AGG + chr4.2:18009199-18009218 None:intergenic 40.0%
! AATCTGGAGGCCATGATTTT+GGG + chr4.2:18009274-18009293 None:intergenic 40.0%
! CCAAAGGTGCAATGATGATA+TGG - chr4.2:18010183-18010202 MS.gene028353:CDS 40.0%
! GTGATGATGACAAGTGGTTT+AGG + chr4.2:18009210-18009229 None:intergenic 40.0%
! TGAATATGGGAAGGTTCTAG+AGG + chr4.2:18009234-18009253 None:intergenic 40.0%
! TTTCATGAAGATGGTGCCAA+AGG - chr4.2:18010167-18010186 MS.gene028353:CDS 40.0%
!! AGTGTTGCTTAACAGAACAC+TGG - chr4.2:18010052-18010071 MS.gene028353:CDS 40.0%
!! GGAGTAAGAGGAATTGGTTT+TGG + chr4.2:18009136-18009155 None:intergenic 40.0%
!!! TTGTTTTGGGCTATTAGAGG+TGG - chr4.2:18009648-18009667 MS.gene028353:CDS 40.0%
AAAACTGCTTGGGTTCAGTC+TGG - chr4.2:18009405-18009424 MS.gene028353:CDS 45.0%
ACTTCAGGTAATGCGCCTTT+CGG + chr4.2:18010035-18010054 None:intergenic 45.0%
AGGATAGACCCTCAAAGTCA+TGG + chr4.2:18009314-18009333 None:intergenic 45.0%
ATACCTTCTCTTGTGCCCAA+GGG - chr4.2:18010572-18010591 MS.gene028353:CDS 45.0%
GCTTGTCCTACAATAGGTGT+TGG - chr4.2:18009495-18009514 MS.gene028353:CDS 45.0%
GTAAACACCGTCACAGTTGA+TGG + chr4.2:18009729-18009748 None:intergenic 45.0%
TACTGGGGAGTAAGAGGAAT+TGG + chr4.2:18009142-18009161 None:intergenic 45.0%
TATACCTTCTCTTGTGCCCA+AGG - chr4.2:18010571-18010590 MS.gene028353:CDS 45.0%
TGTCCACCAACACCTATTGT+AGG + chr4.2:18009504-18009523 None:intergenic 45.0%
! AAAGTTTCCTGAGTTGGGTG+TGG - chr4.2:18009950-18009969 MS.gene028353:CDS 45.0%
! AGAGGTGTGATGATGACAAG+TGG + chr4.2:18009216-18009235 None:intergenic 45.0%
! GAATCTGGAGGCCATGATTT+TGG + chr4.2:18009275-18009294 None:intergenic 45.0%
! TTTTGGGCTATTAGAGGTGG+TGG - chr4.2:18009651-18009670 MS.gene028353:CDS 45.0%
!! AGCATCGATCACATTATCCG+CGG + chr4.2:18009574-18009593 None:intergenic 45.0%
!! TGTCCTACAATAGGTGTTGG+TGG - chr4.2:18009498-18009517 MS.gene028353:CDS 45.0%
!! TTACCAGGTTGATTGGCAAC+AGG - chr4.2:18010289-18010308 MS.gene028353:CDS 45.0%
!! TTTGAGTACTGGGGAGTAAG+AGG + chr4.2:18009148-18009167 None:intergenic 45.0%
ATTGTAGGACAAGCACCAGC+TGG + chr4.2:18009489-18009508 None:intergenic 50.0%
CAGCTGGGAAACCGAGATTT+CGG + chr4.2:18009473-18009492 None:intergenic 50.0%
CTTCCTGTTGCCAATCAACC+TGG + chr4.2:18010295-18010314 None:intergenic 50.0%
GCGTAAATATGGTCTAGCCG+CGG - chr4.2:18009554-18009573 MS.gene028353:CDS 50.0%
GCTGGTGCTTGTCCTACAAT+AGG - chr4.2:18009489-18009508 MS.gene028353:CDS 50.0%
GTTCAGTCTGGTGCAACACT+TGG - chr4.2:18009417-18009436 MS.gene028353:CDS 50.0%
TCCAGATTCGAACCCGTAGT+GGG - chr4.2:18009286-18009305 MS.gene028353:CDS 50.0%
TCTCTAACCACACCCAACTC+AGG + chr4.2:18009960-18009979 None:intergenic 50.0%
TTGGCAACAGGAAGGTGATG+AGG - chr4.2:18010301-18010320 MS.gene028353:CDS 50.0%
TTGTAGGACAAGCACCAGCT+GGG + chr4.2:18009488-18009507 None:intergenic 50.0%
!! CAGGTTGATTGGCAACAGGA+AGG - chr4.2:18010293-18010312 MS.gene028353:CDS 50.0%
AAAGTCATGGCCCCCACTAC+GGG + chr4.2:18009301-18009320 None:intergenic 55.0%
AGTGGGGGCCATGACTTTGA+GGG - chr4.2:18009303-18009322 MS.gene028353:CDS 55.0%
CAAAGTCATGGCCCCCACTA+CGG + chr4.2:18009302-18009321 None:intergenic 55.0%
CACTACGGGTTCGAATCTGG+AGG + chr4.2:18009287-18009306 None:intergenic 55.0%
CAGATTCGAACCCGTAGTGG+GGG - chr4.2:18009288-18009307 MS.gene028353:CDS 55.0%
CCAGATTCGAACCCGTAGTG+GGG - chr4.2:18009287-18009306 MS.gene028353:CDS 55.0%
CGAAATCTCGGTTTCCCAGC+TGG - chr4.2:18009471-18009490 MS.gene028353:CDS 55.0%
CTCCAGATTCGAACCCGTAG+TGG - chr4.2:18009285-18009304 MS.gene028353:CDS 55.0%
GCAACAGGAAGGTGATGAGG+TGG - chr4.2:18010304-18010323 MS.gene028353:CDS 55.0%
TAGTGGGGGCCATGACTTTG+AGG - chr4.2:18009302-18009321 MS.gene028353:CDS 55.0%
TGTCCCTTGGGCACAAGAGA+AGG + chr4.2:18010578-18010597 None:intergenic 55.0%
! GTTGGTGGACACTTCAGTGG+TGG - chr4.2:18009513-18009532 MS.gene028353:CDS 55.0%
! TGGGCTATTAGAGGTGGTGG+AGG - chr4.2:18009654-18009673 MS.gene028353:CDS 55.0%
!! GGTGTTGGTGGACACTTCAG+TGG - chr4.2:18009510-18009529 MS.gene028353:CDS 55.0%
!!! GGTGGTGGAGGAGCAAGTTT+TGG - chr4.2:18009666-18009685 MS.gene028353:CDS 55.0%
CCCCACTACGGGTTCGAATC+TGG + chr4.2:18009290-18009309 None:intergenic 60.0%
GGTGGACACTTCAGTGGTGG+CGG - chr4.2:18009516-18009535 MS.gene028353:CDS 60.0%
!! CACTTCAGTGGTGGCGGCTA+TGG - chr4.2:18009522-18009541 MS.gene028353:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 18008976 18010604 18008976 ID=MS.gene028353
chr4.2 mRNA 18008976 18010604 18008976 ID=MS.gene028353.t1;Parent=MS.gene028353
chr4.2 exon 18008976 18010604 18008976 ID=MS.gene028353.t1.exon1;Parent=MS.gene028353.t1
chr4.2 CDS 18008976 18010604 18008976 ID=cds.MS.gene028353.t1;Parent=MS.gene028353.t1
Gene Sequence

>MS.gene028353

ATGATGCCTCTAAGCTCATATTTGTCTATTGCACTTATTGCTATTTTATTTTCATATGCATCTTCTGCAATTGATACTAATACTTATGAAGATAACTTCCTTCAATGTCTTTCTAGTTATTCACATAACTCAACTTCAATCTCTAAAGTTGTGTACACCAAAACCAATTCCTCTTACTCCCCAGTACTCAAATATACAACTCAAAATCTAAGATTTGCATCCTACACAACACCTAAACCACTTGTCATCATCACACCTCTAGAACCTTCCCATATTCAAACAGCCATAATTTGTTCCCAAAATCATGGCCTCCAGATTCGAACCCGTAGTGGGGGCCATGACTTTGAGGGTCTATCCTATGTTTCAGAAGTTCCATTTGTTGTCATTGATCTCATAAACTTCAAGGAAATTGATGTAGATGTAGAAAGCAAAACTGCTTGGGTTCAGTCTGGTGCAACACTTGGTGAACTTTACTACACAATTAGCAAAAAAAGCCGAAATCTCGGTTTCCCAGCTGGTGCTTGTCCTACAATAGGTGTTGGTGGACACTTCAGTGGTGGCGGCTATGGAACCTTAGTGCGTAAATATGGTCTAGCCGCGGATAATGTGATCGATGCTCACATTATTGATGTGAAGGGTAGGTTTCTTGACAGAGAAGCAATGGGTGAAGATTTGTTTTGGGCTATTAGAGGTGGTGGAGGAGCAAGTTTTGGAGTCATAATTTCATGGAAGATTAAACTTGTTCAAGTTCCATCAACTGTGACGGTGTTTACTGTTGCAAAAGCATTGGAGCAAAATGCTACAAAGCTTGTTCATAAGTGGCAGTATGTGGCAAGTAAAATTGATGAAAACATAGCCATCAATATTGTCTTTCAAAGGATAAATTCAAGTAAAAAAGGTGAGACAACAATTCTAGCTATATTTCAATCCTTGTTTCTTGGAGGTGTAGATAAACTCATTCCCTTGATGGAAGAAAAGTTTCCTGAGTTGGGTGTGGTTAGAGAAAATTGTATTGAAATGAGTTGGATTGAATCGGTTCTTTACCTTTTTCAATTTCCGAAAGGCGCATTACCTGAAGTGTTGCTTAACAGAACACTGGCTGCAAACAGCCCAAGATTTATTTACAAAGCAAAATCTGATTTTGTGAAAACTCCTATTCCTGAAAATGGATTAGAAGGAATATGGTCTTTGTTTCATGAAGATGGTGCCAAAGGTGCAATGATGATATGGTTTCCTTATGGTGGAATAATGGATACTATTTCAGAGTCTGAAATTCCATTTCCTCATAGAAAAGGAAATTTATACCATATTCATTACCAGGTTGATTGGCAACAGGAAGGTGATGAGGTGGAAAAACTGCACATTAATTGGATTAGAAAAATTTATAATTACATGGAACCTTTTGTTTCAAAGTCTCCAAGAATTGGGTATATCAACTATAGAGACCTTGATATTGGTGTGAATAACATTGATGGTTACACAAGCTACAAGCAAGCTAGTATTTGGGGTGTTAAGTACTTCAAGAACAACTTCAAAAGATTGGCAAAAGTGAAGACCAAAGTTGATCCTCTAAACTTTTTCAGAAATGAACAGAGTATACCTTCTCTTGTGCCCAAGGGACACAAATAA
Protein sequence

>MS.gene028353.t1

MMPLSSYLSIALIAILFSYASSAIDTNTYEDNFLQCLSSYSHNSTSISKVVYTKTNSSYSPVLKYTTQNLRFASYTTPKPLVIITPLEPSHIQTAIICSQNHGLQIRTRSGGHDFEGLSYVSEVPFVVIDLINFKEIDVDVESKTAWVQSGATLGELYYTISKKSRNLGFPAGACPTIGVGGHFSGGGYGTLVRKYGLAADNVIDAHIIDVKGRFLDREAMGEDLFWAIRGGGGASFGVIISWKIKLVQVPSTVTVFTVAKALEQNATKLVHKWQYVASKIDENIAINIVFQRINSSKKGETTILAIFQSLFLGGVDKLIPLMEEKFPELGVVRENCIEMSWIESVLYLFQFPKGALPEVLLNRTLAANSPRFIYKAKSDFVKTPIPENGLEGIWSLFHEDGAKGAMMIWFPYGGIMDTISESEIPFPHRKGNLYHIHYQVDWQQEGDEVEKLHINWIRKIYNYMEPFVSKSPRIGYINYRDLDIGVNNIDGYTSYKQASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSLVPKGHK