AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36438


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36438.t1 MTR_4g094492 94.824 541 28 0 1 541 2 542 0.0 1043
MS.gene36438.t1 MTR_4g094488 79.817 545 103 3 1 541 2 543 0.0 873
MS.gene36438.t1 MTR_4g094495 80.109 548 99 5 1 541 2 546 0.0 873
MS.gene36438.t1 MTR_4g094478 78.439 538 111 2 1 536 2 536 0.0 855
MS.gene36438.t1 MTR_4g094480 77.164 543 119 2 1 541 2 541 0.0 848
MS.gene36438.t1 MTR_4g094418 70.776 438 120 3 103 535 1 435 0.0 650
MS.gene36438.t1 MTR_2g031560 51.803 527 243 5 12 535 5 523 0.0 573
MS.gene36438.t1 MTR_2g031390 52.052 536 241 8 4 535 6 529 0.0 568
MS.gene36438.t1 MTR_3g009880 55.303 528 222 9 11 535 4 520 0.0 561
MS.gene36438.t1 MTR_3g009760 53.918 536 227 9 5 535 2 522 0.0 559
MS.gene36438.t1 MTR_3g009820 53.271 535 232 8 5 535 2 522 0.0 553
MS.gene36438.t1 MTR_2g031420 53.832 535 232 7 5 535 4 527 0.0 551
MS.gene36438.t1 MTR_4g094520 51.509 530 247 6 9 535 10 532 0.0 546
MS.gene36438.t1 MTR_2g031460 53.618 539 227 7 5 535 4 527 0.0 545
MS.gene36438.t1 MTR_4g094498 55.578 502 215 5 34 535 41 534 0.0 545
MS.gene36438.t1 MTR_2g031590 52.134 539 247 5 1 535 1 532 0.0 543
MS.gene36438.t1 MTR_4g094518 53.996 513 220 8 29 535 28 530 0.0 532
MS.gene36438.t1 MTR_2g031490 51.111 540 251 9 2 535 6 538 1.46e-178 514
MS.gene36438.t1 MTR_4g091150 51.772 508 239 4 30 535 37 540 2.09e-176 508
MS.gene36438.t1 MTR_2g031510 50.391 512 243 6 32 539 40 544 3.90e-172 498
MS.gene36438.t1 MTR_4g057990 49.811 528 255 7 7 534 4 521 1.20e-170 493
MS.gene36438.t1 MTR_6g017205 48.204 529 261 5 9 536 11 527 1.00e-168 489
MS.gene36438.t1 MTR_4g091200 47.925 530 262 5 6 534 9 525 1.10e-168 488
MS.gene36438.t1 MTR_4g094515 49.440 536 262 5 6 538 624 1153 1.15e-168 508
MS.gene36438.t1 MTR_4g094515 50.197 508 242 7 31 534 39 539 2.13e-166 502
MS.gene36438.t1 MTR_4g088355 49.315 511 254 3 31 540 32 538 8.41e-168 486
MS.gene36438.t1 MTR_4g091190 48.924 511 252 5 31 540 31 533 1.21e-164 478
MS.gene36438.t1 MTR_4g091170 46.983 464 222 3 72 534 101 541 1.27e-153 451
MS.gene36438.t1 MTR_2g023590 48.401 469 234 4 67 534 4 465 5.67e-147 431
MS.gene36438.t1 MTR_1g076830 43.659 481 261 7 56 532 58 532 5.05e-126 380
MS.gene36438.t1 MTR_2g031600 58.848 243 98 1 3 245 4 244 1.76e-86 273
MS.gene36438.t1 MTR_2g031600 51.572 159 74 2 377 535 245 400 4.07e-50 177
MS.gene36438.t1 MTR_3g009850 59.130 230 87 5 307 535 5 228 8.60e-85 263
MS.gene36438.t1 MTR_2g084370 47.748 111 36 2 127 237 1 89 3.77e-31 116
MS.gene36438.t1 MTR_2g084405 53.750 80 37 0 127 206 1 80 3.32e-21 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36438.t1 AT5G44400 49.907 539 251 9 9 536 7 537 0.0 526
MS.gene36438.t1 AT5G44440 50.649 539 248 7 1 533 1 527 0.0 525
MS.gene36438.t1 AT5G44440 50.649 539 248 7 1 533 71 597 0.0 524
MS.gene36438.t1 AT4G20820 49.071 538 255 6 1 533 1 524 0.0 523
MS.gene36438.t1 AT2G34790 48.566 523 251 9 20 536 21 531 5.26e-179 515
MS.gene36438.t1 AT5G44410 49.907 537 246 8 3 533 8 527 1.69e-176 508
MS.gene36438.t1 AT5G44390 46.863 542 273 9 2 535 6 540 3.80e-174 503
MS.gene36438.t1 AT5G44360 48.704 540 259 10 3 536 4 531 8.05e-174 501
MS.gene36438.t1 AT5G44360 48.704 540 259 10 3 536 20 547 9.41e-174 502
MS.gene36438.t1 AT1G30760 48.643 516 245 9 26 534 29 531 4.60e-170 492
MS.gene36438.t1 AT1G30760 48.643 516 245 9 26 534 47 549 5.66e-170 493
MS.gene36438.t1 AT5G44380 49.444 540 261 7 1 535 7 539 3.14e-168 488
MS.gene36438.t1 AT5G44380 49.444 540 261 7 1 535 47 579 5.08e-168 489
MS.gene36438.t1 AT4G20860 48.932 515 244 10 29 535 26 529 6.25e-168 486
MS.gene36438.t1 AT1G30730 47.826 529 262 6 7 533 7 523 4.88e-166 481
MS.gene36438.t1 AT1G11770 48.819 508 248 7 31 535 31 529 1.89e-165 480
MS.gene36438.t1 AT1G30700 47.753 534 266 6 7 535 1 526 1.13e-164 478
MS.gene36438.t1 AT1G26420 46.828 536 267 9 3 533 1 523 1.03e-163 476
MS.gene36438.t1 AT1G26380 47.191 534 265 8 10 538 7 528 3.34e-162 472
MS.gene36438.t1 AT4G20840 46.394 513 263 7 30 539 36 539 1.76e-159 465
MS.gene36438.t1 AT1G30720 49.008 504 247 5 32 533 29 524 3.26e-158 462
MS.gene36438.t1 AT1G26400 45.083 539 269 9 3 532 1 521 1.79e-156 457
MS.gene36438.t1 AT1G34575 47.961 515 247 10 29 538 29 527 1.96e-156 457
MS.gene36438.t1 AT1G26410 46.979 513 261 8 25 535 46 549 3.23e-156 457
MS.gene36438.t1 AT1G30710 45.896 536 265 10 7 535 11 528 6.26e-156 456
MS.gene36438.t1 AT4G20800 45.898 512 270 4 22 533 19 523 1.66e-155 455
MS.gene36438.t1 AT1G26390 47.222 504 259 4 31 533 28 525 1.15e-154 452
MS.gene36438.t1 AT4G20830 46.911 518 263 7 25 539 32 540 1.36e-151 445
MS.gene36438.t1 AT1G01980 46.422 517 260 10 30 538 30 537 6.47e-151 443
MS.gene36438.t1 AT4G20830 47.082 514 260 7 25 535 32 536 1.33e-150 444
MS.gene36438.t1 AT1G30740 45.810 537 272 10 11 537 6 533 1.88e-148 437
MS.gene36438.t1 AT1G30740 45.810 537 272 10 11 537 3 530 1.92e-148 437
MS.gene36438.t1 AT2G34810 44.510 510 276 4 30 535 33 539 9.25e-142 420

Find 112 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCTGGAGGCCATGATTT+TGG 0.130838 4.1:+18852900 None:intergenic
AAATTATGGCTGTTTGAATA+TGG 0.187785 4.1:+18852927 None:intergenic
GCTACAAGCAAGCTAGTATT+TGG 0.235073 4.1:-18851713 MS.gene36438:CDS
CGCCTTTCGGAAATTGAAAA+AGG 0.237346 4.1:+18852153 None:intergenic
AAAACTCCTATTCCTGAAAA+TGG 0.251375 4.1:-18852050 MS.gene36438:CDS
CAATGGGTGAAGATTTGTTT+TGG 0.263104 4.1:-18852538 MS.gene36438:CDS
GGTGGCGGAGGAGCAAGTTT+TGG 0.297604 4.1:-18852506 MS.gene36438:CDS
ATATTTCAATCCTTGTTTCT+TGG 0.298323 4.1:-18852278 MS.gene36438:CDS
GTTTCAAAGTCTCCAAGAAT+TGG 0.300797 4.1:-18851792 MS.gene36438:CDS
GTGAGCATCAATTATATTAT+CGG 0.307370 4.1:+18852598 None:intergenic
TTTGCTTTGTAAATAAATCT+TGG 0.313472 4.1:+18852086 None:intergenic
GTTTCCTTATGGTGGAATAA+TGG 0.315442 4.1:-18851967 MS.gene36438:CDS
GGAACCTTGGTTCGTAAATA+TGG 0.319156 4.1:-18852629 MS.gene36438:CDS
CCTTTGAAAGACAATATTGA+TGG 0.321417 4.1:+18852340 None:intergenic
CATTGATCTTGTAAACTTCA+AGG 0.323648 4.1:-18852813 MS.gene36438:CDS
AATCAACCTGGTAATGAATA+TGG 0.323880 4.1:+18851892 None:intergenic
ATTCCTGAAAATGGATTAGA+AGG 0.350473 4.1:-18852041 MS.gene36438:CDS
CCCCACTACGGGTTCGAATC+TGG 0.361159 4.1:+18852885 None:intergenic
TAGTTGATATACCCAATTCT+TGG 0.362017 4.1:+18851780 None:intergenic
ATATTCATTACCAGGTTGAT+TGG 0.363341 4.1:-18851890 MS.gene36438:CDS
TACTGGTGAGTAAGAGGAAT+TGG 0.365636 4.1:+18853033 None:intergenic
TTGCTTTGTAAATAAATCTT+GGG 0.367450 4.1:+18852087 None:intergenic
ATTAATTTATTTGTGTCCCT+TGG 0.367735 4.1:+18851584 None:intergenic
AACTATAGAGACCTTGATAT+TGG 0.379359 4.1:-18851762 MS.gene36438:CDS
CAAGAACAACTTCAAAAGAT+TGG 0.382060 4.1:-18851676 MS.gene36438:CDS
CCATATCATCATTGCACCTT+TGG 0.387821 4.1:+18851989 None:intergenic
CTTGGAGACTTTGAAACAAA+AGG 0.388823 4.1:+18851798 None:intergenic
ATAGACAAATATGAGCTTAG+AGG 0.392833 4.1:+18853190 None:intergenic
CAGCTGGGAAACCGAGATTT+CGG 0.397206 4.1:+18852702 None:intergenic
CTACAAGCAAGCTAGTATTT+GGG 0.397390 4.1:-18851712 MS.gene36438:CDS
CCAAAGGTGCAATGATGATA+TGG 0.399938 4.1:-18851989 MS.gene36438:CDS
GTAAACACCGTCACAGTTGA+TGG 0.407633 4.1:+18852446 None:intergenic
AGATAAACTCATTCCCTTGA+TGG 0.407746 4.1:-18852249 MS.gene36438:CDS
AATTATGGCTGTTTGAATAT+GGG 0.408415 4.1:+18852928 None:intergenic
TTTCAAAGTCTCCAAGAATT+GGG 0.412921 4.1:-18851791 MS.gene36438:CDS
ACAAGATCAATGACAACAAA+TGG 0.413992 4.1:+18852824 None:intergenic
AAAATGGATTAGAAGGAATA+TGG 0.414702 4.1:-18852034 MS.gene36438:CDS
TTAATTTATTTGTGTCCCTT+GGG 0.415606 4.1:+18851585 None:intergenic
AAAATTGTATTGAAATGAGT+TGG 0.420053 4.1:-18852193 MS.gene36438:CDS
ACTTCAGGTAATGCGCCTTT+CGG 0.422852 4.1:+18852140 None:intergenic
TTTCAATCCTTGTTTCTTGG+AGG 0.424294 4.1:-18852275 MS.gene36438:CDS
GTGATGATGACAAGTGGTTT+AGG 0.431669 4.1:+18852965 None:intergenic
ATGATGATATGGTTTCCTTA+TGG 0.438370 4.1:-18851978 MS.gene36438:CDS
ATTCCATTTCCTCATAGAAA+AGG 0.440912 4.1:-18851924 MS.gene36438:CDS
GCTGGTGCTTGTCCTACAAT+AGG 0.442267 4.1:-18852683 MS.gene36438:CDS
TGAAATGAGTTGGATTGAAT+CGG 0.452927 4.1:-18852183 MS.gene36438:CDS
GTTCTGTTAAGCAACACTTC+AGG 0.454581 4.1:+18852125 None:intergenic
TTTGAGTACTGGTGAGTAAG+AGG 0.455507 4.1:+18853027 None:intergenic
CACTTCAGTGGTGGTGGCTA+TGG 0.458500 4.1:-18852650 MS.gene36438:CDS
TGAGTAAGAGGAATTGGTTT+TGG 0.462718 4.1:+18853039 None:intergenic
TCCAGATTCGAACCCGTAGT+GGG 0.475163 4.1:-18852886 MS.gene36438:CDS
TTACCAGGTTGATTGGCAAC+AGG 0.475690 4.1:-18851883 MS.gene36438:CDS
ATAATTTGTTCCCAAAATCA+TGG 0.478899 4.1:-18852911 MS.gene36438:CDS
AAAGTTTAGAGGATCAACTT+TGG 0.482938 4.1:+18851641 None:intergenic
TGTAGAAAGCAAAACTGCTT+GGG 0.483507 4.1:-18852777 MS.gene36438:CDS
TGGTCTTTGTTTCATGAAGA+TGG 0.483871 4.1:-18852014 MS.gene36438:CDS
TGAGTTGTAAATTTGAGTAC+TGG 0.484352 4.1:+18853016 None:intergenic
GAAGAAAAGTTTCCTGAGTT+GGG 0.486919 4.1:-18852227 MS.gene36438:CDS
CGAAATCTCGGTTTCCCAGC+TGG 0.487820 4.1:-18852701 MS.gene36438:CDS
TGTCCACCAACACCTATTGT+AGG 0.487897 4.1:+18852671 None:intergenic
AAAACTGCTTGGGTTCAGTC+TGG 0.489702 4.1:-18852767 MS.gene36438:CDS
ATTGGTGTGAATAACATTGA+TGG 0.497447 4.1:-18851744 MS.gene36438:CDS
GTTTACTGTTGCAAAAGCAT+TGG 0.502433 4.1:-18852429 MS.gene36438:CDS
GTATCCATTATTCCACCATA+AGG 0.507512 4.1:+18851963 None:intergenic
ATTGTAGGACAAGCACCAGC+TGG 0.507999 4.1:+18852686 None:intergenic
CTTCCTGTTGCCAATCAACC+TGG 0.513010 4.1:+18851880 None:intergenic
TGTCCCTTGGGCACAAGAGA+AGG 0.516026 4.1:+18851597 None:intergenic
ATGTAGAAAGCAAAACTGCT+TGG 0.516128 4.1:-18852778 MS.gene36438:CDS
GGAAGAAAAGTTTCCTGAGT+TGG 0.517366 4.1:-18852228 MS.gene36438:CDS
TCTCTAACCACACCCAACTC+AGG 0.530976 4.1:+18852215 None:intergenic
AATAACTAGAAAGACATTGA+AGG 0.537999 4.1:+18853098 None:intergenic
GTTCAGTCTGGTGCAACACT+TGG 0.538464 4.1:-18852755 MS.gene36438:CDS
TGTTATTCACACCAATATCA+AGG 0.539812 4.1:+18851751 None:intergenic
CTCCAGATTCGAACCCGTAG+TGG 0.540664 4.1:-18852887 MS.gene36438:CDS
TTTATACCATATTCATTACC+AGG 0.548049 4.1:-18851898 MS.gene36438:CDS
TTTCTTGACAGACAAGCAAT+GGG 0.551117 4.1:-18852554 MS.gene36438:CDS
CCATCAATATTGTCTTTCAA+AGG 0.551890 4.1:-18852340 MS.gene36438:CDS
GTTTCTTGACAGACAAGCAA+TGG 0.552283 4.1:-18852555 MS.gene36438:CDS
AAAGTTTCCTGAGTTGGGTG+TGG 0.552427 4.1:-18852222 MS.gene36438:CDS
TATACCTTCTCTTGTGCCCA+AGG 0.564129 4.1:-18851601 MS.gene36438:CDS
GGTGGACACTTCAGTGGTGG+TGG 0.569924 4.1:-18852656 MS.gene36438:CDS
TGTTCACAAGTGGCAGTATG+TGG 0.580228 4.1:-18852387 MS.gene36438:CDS
ATGATATGGTTTCCTTATGG+TGG 0.582909 4.1:-18851975 MS.gene36438:CDS
ATGGCTGTTTGAATATGGGA+AGG 0.583461 4.1:+18852932 None:intergenic
TGGGCTATTAGAGGTGGCGG+AGG 0.585106 4.1:-18852518 MS.gene36438:CDS
CTACAAAGCTTGTTCACAAG+TGG 0.585250 4.1:-18852397 MS.gene36438:CDS
TGCTCACATAATTGATGTGA+AGG 0.585552 4.1:-18852582 MS.gene36438:CDS
ATCTACACCTCCAAGAAACA+AGG 0.586811 4.1:+18852268 None:intergenic
ACATAATTGATGTGAAGGGT+AGG 0.589985 4.1:-18852577 MS.gene36438:CDS
AAGTGGTTTAGGTGTTGTGT+AGG 0.592233 4.1:+18852976 None:intergenic
TGTCCTACAATAGGTGTTGG+TGG 0.592774 4.1:-18852674 MS.gene36438:CDS
CCAGATTCGAACCCGTAGTG+GGG 0.593132 4.1:-18852885 MS.gene36438:CDS
GCTTGTCCTACAATAGGTGT+TGG 0.602006 4.1:-18852677 MS.gene36438:CDS
TACAAGCAAGCTAGTATTTG+GGG 0.602138 4.1:-18851711 MS.gene36438:CDS
TGGTGGTGGCTATGGAACCT+TGG 0.603059 4.1:-18852642 MS.gene36438:CDS
TTGTAGGACAAGCACCAGCT+GGG 0.603228 4.1:+18852687 None:intergenic
TGAATATGGGAAGGTTCTAG+AGG 0.607797 4.1:+18852941 None:intergenic
CAGGTTGATTGGCAACAGGA+AGG 0.608073 4.1:-18851879 MS.gene36438:CDS
AGGATAGACCCTCAAAGTCA+TGG 0.608222 4.1:+18852861 None:intergenic
CAGATTCGAACCCGTAGTGG+GGG 0.608743 4.1:-18852884 MS.gene36438:CDS
GCAACAGGAAGGTGATGAGG+TGG 0.620727 4.1:-18851868 MS.gene36438:CDS
TCAAGTTCCATCAACTGTGA+CGG 0.625682 4.1:-18852453 MS.gene36438:CDS
GTTGGTGGACACTTCAGTGG+TGG 0.625730 4.1:-18852659 MS.gene36438:CDS
TTTCATGAAGATGGTGCCAA+AGG 0.627110 4.1:-18852005 MS.gene36438:CDS
AAGACCATATTTACGAACCA+AGG 0.633836 4.1:+18852625 None:intergenic
ATACCTTCTCTTGTGCCCAA+GGG 0.645386 4.1:-18851600 MS.gene36438:CDS
CACTACGGGTTCGAATCTGG+AGG 0.666507 4.1:+18852888 None:intergenic
GGTGTTGGTGGACACTTCAG+TGG 0.668243 4.1:-18852662 MS.gene36438:CDS
GCTCACATAATTGATGTGAA+GGG 0.694549 4.1:-18852581 MS.gene36438:CDS
AGAGGTGTGATGATGACAAG+TGG 0.700893 4.1:+18852959 None:intergenic
AGTGTTGCTTAACAGAACAC+TGG 0.704218 4.1:-18852120 MS.gene36438:CDS
TTGGCAACAGGAAGGTGATG+AGG 0.705230 4.1:-18851871 MS.gene36438:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAAATTTATAATTACA+TGG - chr4.1:18852960-18852979 MS.gene36438:CDS 10.0%
!! AAAATTGTATTGAAATGAGT+TGG - chr4.1:18852590-18852609 MS.gene36438:CDS 20.0%
!! AGGATAAATTCAAGTAAAAA+AGG - chr4.1:18852463-18852482 MS.gene36438:CDS 20.0%
!! TTGCTTTGTAAATAAATCTT+GGG + chr4.1:18852699-18852718 None:intergenic 20.0%
!! TTTGCTTTGTAAATAAATCT+TGG + chr4.1:18852700-18852719 None:intergenic 20.0%
!!! TATAAATTTCCTTTTCTATG+AGG + chr4.1:18852871-18852890 None:intergenic 20.0%
! AAATTATGGCTGTTTGAATA+TGG + chr4.1:18851859-18851878 None:intergenic 25.0%
! AATAACTAGAAAGACATTGA+AGG + chr4.1:18851688-18851707 None:intergenic 25.0%
! AATTATGGCTGTTTGAATAT+GGG + chr4.1:18851858-18851877 None:intergenic 25.0%
! GTGAGCATCAATTATATTAT+CGG + chr4.1:18852188-18852207 None:intergenic 25.0%
! TTTATACCATATTCATTACC+AGG - chr4.1:18852885-18852904 MS.gene36438:CDS 25.0%
!! ATATTTCAATCCTTGTTTCT+TGG - chr4.1:18852505-18852524 MS.gene36438:CDS 25.0%
!! TCATTTCTGAAAAAGTTTAG+AGG + chr4.1:18853156-18853175 None:intergenic 25.0%
!!! AAAATGGATTAGAAGGAATA+TGG - chr4.1:18852749-18852768 MS.gene36438:CDS 25.0%
!!! AAATGGAACTTTTGAAACAT+AGG + chr4.1:18851945-18851964 None:intergenic 25.0%
!!! ATAATTTGTTCCCAAAATCA+TGG - chr4.1:18851872-18851891 MS.gene36438:CDS 25.0%
!!! ATGATTTTGGGAACAAATTA+TGG + chr4.1:18851873-18851892 None:intergenic 25.0%
AAAACTCCTATTCCTGAAAA+TGG - chr4.1:18852733-18852752 MS.gene36438:CDS 30.0%
AAAGTTTAGAGGATCAACTT+TGG + chr4.1:18853145-18853164 None:intergenic 30.0%
AACTATAGAGACCTTGATAT+TGG - chr4.1:18853021-18853040 MS.gene36438:CDS 30.0%
ACAAGATCAATGACAACAAA+TGG + chr4.1:18851962-18851981 None:intergenic 30.0%
ATAGACAAATATGAGCTTAG+AGG + chr4.1:18851596-18851615 None:intergenic 30.0%
ATGATGATATGGTTTCCTTA+TGG - chr4.1:18852805-18852824 MS.gene36438:CDS 30.0%
ATTCCATTTCCTCATAGAAA+AGG - chr4.1:18852859-18852878 MS.gene36438:CDS 30.0%
ATTGGTGTGAATAACATTGA+TGG - chr4.1:18853039-18853058 MS.gene36438:CDS 30.0%
CAAGAACAACTTCAAAAGAT+TGG - chr4.1:18853107-18853126 MS.gene36438:CDS 30.0%
CATTGATCTTGTAAACTTCA+AGG - chr4.1:18851970-18851989 MS.gene36438:CDS 30.0%
CCATCAATATTGTCTTTCAA+AGG - chr4.1:18852443-18852462 MS.gene36438:CDS 30.0%
TGAGTTGTAAATTTGAGTAC+TGG + chr4.1:18851770-18851789 None:intergenic 30.0%
TGGAAAAACTGCACATTAAT+TGG - chr4.1:18852935-18852954 MS.gene36438:CDS 30.0%
TGTTATTCACACCAATATCA+AGG + chr4.1:18853035-18853054 None:intergenic 30.0%
TTTCAAAGTCTCCAAGAATT+GGG - chr4.1:18852992-18853011 MS.gene36438:CDS 30.0%
! AATCAACCTGGTAATGAATA+TGG + chr4.1:18852894-18852913 None:intergenic 30.0%
! ATTCCTTCTAATCCATTTTC+AGG + chr4.1:18852748-18852767 None:intergenic 30.0%
! CCTTTGAAAGACAATATTGA+TGG + chr4.1:18852446-18852465 None:intergenic 30.0%
! TAGTTGATATACCCAATTCT+TGG + chr4.1:18853006-18853025 None:intergenic 30.0%
! TGAAATGAGTTGGATTGAAT+CGG - chr4.1:18852600-18852619 MS.gene36438:CDS 30.0%
! TTTCCTTTTCTATGAGGAAA+TGG + chr4.1:18852865-18852884 None:intergenic 30.0%
!! AATGGGTGAAGATTTGTTTT+GGG - chr4.1:18852246-18852265 MS.gene36438:CDS 30.0%
!! ATATTCATTACCAGGTTGAT+TGG - chr4.1:18852893-18852912 MS.gene36438:CDS 30.0%
!! ATTCCTGAAAATGGATTAGA+AGG - chr4.1:18852742-18852761 MS.gene36438:CDS 30.0%
!! TCTAATCCATTTTCAGGAAT+AGG + chr4.1:18852742-18852761 None:intergenic 30.0%
!!! GTTTTGGAGTCATAATTTCA+TGG - chr4.1:18852293-18852312 MS.gene36438:CDS 30.0%
!!! TACCTTTTTCAATTTCCGAA+AGG - chr4.1:18852628-18852647 MS.gene36438:CDS 30.0%
AAGACCATATTTACGAACCA+AGG + chr4.1:18852161-18852180 None:intergenic 35.0%
ACATAATTGATGTGAAGGGT+AGG - chr4.1:18852206-18852225 MS.gene36438:CDS 35.0%
AGATAAACTCATTCCCTTGA+TGG - chr4.1:18852534-18852553 MS.gene36438:CDS 35.0%
ATGATATGGTTTCCTTATGG+TGG - chr4.1:18852808-18852827 MS.gene36438:CDS 35.0%
ATGTAGAAAGCAAAACTGCT+TGG - chr4.1:18852005-18852024 MS.gene36438:CDS 35.0%
CTACAAGCAAGCTAGTATTT+GGG - chr4.1:18853071-18853090 MS.gene36438:CDS 35.0%
GAAGAAAAGTTTCCTGAGTT+GGG - chr4.1:18852556-18852575 MS.gene36438:CDS 35.0%
GCTCACATAATTGATGTGAA+GGG - chr4.1:18852202-18852221 MS.gene36438:CDS 35.0%
GTATCCATTATTCCACCATA+AGG + chr4.1:18852823-18852842 None:intergenic 35.0%
GTTTCAAAGTCTCCAAGAAT+TGG - chr4.1:18852991-18853010 MS.gene36438:CDS 35.0%
TACAAGCAAGCTAGTATTTG+GGG - chr4.1:18853072-18853091 MS.gene36438:CDS 35.0%
TGCTCACATAATTGATGTGA+AGG - chr4.1:18852201-18852220 MS.gene36438:CDS 35.0%
TGTAGAAAGCAAAACTGCTT+GGG - chr4.1:18852006-18852025 MS.gene36438:CDS 35.0%
TTTCTTGACAGACAAGCAAT+GGG - chr4.1:18852229-18852248 MS.gene36438:CDS 35.0%
! AGGAAACTTTTCTTCCATCA+AGG + chr4.1:18852551-18852570 None:intergenic 35.0%
! GGAAACTTTTCTTCCATCAA+GGG + chr4.1:18852550-18852569 None:intergenic 35.0%
! GTTTACTGTTGCAAAAGCAT+TGG - chr4.1:18852354-18852373 MS.gene36438:CDS 35.0%
! GTTTCCTTATGGTGGAATAA+TGG - chr4.1:18852816-18852835 MS.gene36438:CDS 35.0%
! TGGTCTTTGTTTCATGAAGA+TGG - chr4.1:18852769-18852788 MS.gene36438:CDS 35.0%
! TTTCAATCCTTGTTTCTTGG+AGG - chr4.1:18852508-18852527 MS.gene36438:CDS 35.0%
!! CAATGGGTGAAGATTTGTTT+TGG - chr4.1:18852245-18852264 MS.gene36438:CDS 35.0%
!! CTTGGAGACTTTGAAACAAA+AGG + chr4.1:18852988-18853007 None:intergenic 35.0%
!! TGAGTAAGAGGAATTGGTTT+TGG + chr4.1:18851747-18851766 None:intergenic 35.0%
!!! GATTTGTTTTGGGCTATTAG+AGG - chr4.1:18852256-18852275 MS.gene36438:CDS 35.0%
AGCCAAAAAAGCCGAAATCT+CGG - chr4.1:18852070-18852089 MS.gene36438:CDS 40.0%
ATCTACACCTCCAAGAAACA+AGG + chr4.1:18852518-18852537 None:intergenic 40.0%
ATGGCTGTTTGAATATGGGA+AGG + chr4.1:18851854-18851873 None:intergenic 40.0%
CCATATCATCATTGCACCTT+TGG + chr4.1:18852797-18852816 None:intergenic 40.0%
CGCCTTTCGGAAATTGAAAA+AGG + chr4.1:18852633-18852652 None:intergenic 40.0%
GCTACAAGCAAGCTAGTATT+TGG - chr4.1:18853070-18853089 MS.gene36438:CDS 40.0%
GGAAGAAAAGTTTCCTGAGT+TGG - chr4.1:18852555-18852574 MS.gene36438:CDS 40.0%
GTTCTGTTAAGCAACACTTC+AGG + chr4.1:18852661-18852680 None:intergenic 40.0%
GTTTCTTGACAGACAAGCAA+TGG - chr4.1:18852228-18852247 MS.gene36438:CDS 40.0%
TACTGGTGAGTAAGAGGAAT+TGG + chr4.1:18851753-18851772 None:intergenic 40.0%
TCAAGTTCCATCAACTGTGA+CGG - chr4.1:18852330-18852349 MS.gene36438:CDS 40.0%
! AAGTGGTTTAGGTGTTGTGT+AGG + chr4.1:18851810-18851829 None:intergenic 40.0%
! AATCTGGAGGCCATGATTTT+GGG + chr4.1:18851885-18851904 None:intergenic 40.0%
! CCAAAGGTGCAATGATGATA+TGG - chr4.1:18852794-18852813 MS.gene36438:CDS 40.0%
! CTACAAAGCTTGTTCACAAG+TGG - chr4.1:18852386-18852405 MS.gene36438:CDS 40.0%
! GGAACCTTGGTTCGTAAATA+TGG - chr4.1:18852154-18852173 MS.gene36438:CDS 40.0%
! GTGATGATGACAAGTGGTTT+AGG + chr4.1:18851821-18851840 None:intergenic 40.0%
! TGAATATGGGAAGGTTCTAG+AGG + chr4.1:18851845-18851864 None:intergenic 40.0%
! TTTCATGAAGATGGTGCCAA+AGG - chr4.1:18852778-18852797 MS.gene36438:CDS 40.0%
!! AGTGTTGCTTAACAGAACAC+TGG - chr4.1:18852663-18852682 MS.gene36438:CDS 40.0%
!! TTTGAGTACTGGTGAGTAAG+AGG + chr4.1:18851759-18851778 None:intergenic 40.0%
!!! AACCGAGATTTCGGCTTTTT+TGG + chr4.1:18852075-18852094 None:intergenic 40.0%
!!! TTGTTTTGGGCTATTAGAGG+TGG - chr4.1:18852259-18852278 MS.gene36438:CDS 40.0%
AAAACTGCTTGGGTTCAGTC+TGG - chr4.1:18852016-18852035 MS.gene36438:CDS 45.0%
ACTTCAGGTAATGCGCCTTT+CGG + chr4.1:18852646-18852665 None:intergenic 45.0%
AGGATAGACCCTCAAAGTCA+TGG + chr4.1:18851925-18851944 None:intergenic 45.0%
ATACCTTCTCTTGTGCCCAA+GGG - chr4.1:18853183-18853202 MS.gene36438:CDS 45.0%
GCTTGTCCTACAATAGGTGT+TGG - chr4.1:18852106-18852125 MS.gene36438:CDS 45.0%
GTAAACACCGTCACAGTTGA+TGG + chr4.1:18852340-18852359 None:intergenic 45.0%
TATACCTTCTCTTGTGCCCA+AGG - chr4.1:18853182-18853201 MS.gene36438:CDS 45.0%
TGTCCACCAACACCTATTGT+AGG + chr4.1:18852115-18852134 None:intergenic 45.0%
TGTTCACAAGTGGCAGTATG+TGG - chr4.1:18852396-18852415 MS.gene36438:CDS 45.0%
! AAAGTTTCCTGAGTTGGGTG+TGG - chr4.1:18852561-18852580 MS.gene36438:CDS 45.0%
! AGAGGTGTGATGATGACAAG+TGG + chr4.1:18851827-18851846 None:intergenic 45.0%
! GAATCTGGAGGCCATGATTT+TGG + chr4.1:18851886-18851905 None:intergenic 45.0%
! TTTTGGGCTATTAGAGGTGG+CGG - chr4.1:18852262-18852281 MS.gene36438:CDS 45.0%
!! TGTCCTACAATAGGTGTTGG+TGG - chr4.1:18852109-18852128 MS.gene36438:CDS 45.0%
!! TTACCAGGTTGATTGGCAAC+AGG - chr4.1:18852900-18852919 MS.gene36438:CDS 45.0%
ATTGTAGGACAAGCACCAGC+TGG + chr4.1:18852100-18852119 None:intergenic 50.0%
CAGCTGGGAAACCGAGATTT+CGG + chr4.1:18852084-18852103 None:intergenic 50.0%
CTTCCTGTTGCCAATCAACC+TGG + chr4.1:18852906-18852925 None:intergenic 50.0%
GCTGGTGCTTGTCCTACAAT+AGG - chr4.1:18852100-18852119 MS.gene36438:CDS 50.0%
GTTCAGTCTGGTGCAACACT+TGG - chr4.1:18852028-18852047 MS.gene36438:CDS 50.0%
TCCAGATTCGAACCCGTAGT+GGG - chr4.1:18851897-18851916 MS.gene36438:CDS 50.0%
TCTCTAACCACACCCAACTC+AGG + chr4.1:18852571-18852590 None:intergenic 50.0%
TTGGCAACAGGAAGGTGATG+AGG - chr4.1:18852912-18852931 MS.gene36438:CDS 50.0%
TTGTAGGACAAGCACCAGCT+GGG + chr4.1:18852099-18852118 None:intergenic 50.0%
!! CAGGTTGATTGGCAACAGGA+AGG - chr4.1:18852904-18852923 MS.gene36438:CDS 50.0%
AAAGTCATGGCCCCCACTAC+GGG + chr4.1:18851912-18851931 None:intergenic 55.0%
AGTGGGGGCCATGACTTTGA+GGG - chr4.1:18851914-18851933 MS.gene36438:CDS 55.0%
CAAAGTCATGGCCCCCACTA+CGG + chr4.1:18851913-18851932 None:intergenic 55.0%
CACTACGGGTTCGAATCTGG+AGG + chr4.1:18851898-18851917 None:intergenic 55.0%
CAGATTCGAACCCGTAGTGG+GGG - chr4.1:18851899-18851918 MS.gene36438:CDS 55.0%
CCAGATTCGAACCCGTAGTG+GGG - chr4.1:18851898-18851917 MS.gene36438:CDS 55.0%
CGAAATCTCGGTTTCCCAGC+TGG - chr4.1:18852082-18852101 MS.gene36438:CDS 55.0%
CTCCAGATTCGAACCCGTAG+TGG - chr4.1:18851896-18851915 MS.gene36438:CDS 55.0%
GCAACAGGAAGGTGATGAGG+TGG - chr4.1:18852915-18852934 MS.gene36438:CDS 55.0%
TAGTGGGGGCCATGACTTTG+AGG - chr4.1:18851913-18851932 MS.gene36438:CDS 55.0%
TGTCCCTTGGGCACAAGAGA+AGG + chr4.1:18853189-18853208 None:intergenic 55.0%
! GTTGGTGGACACTTCAGTGG+TGG - chr4.1:18852124-18852143 MS.gene36438:CDS 55.0%
!! CACTTCAGTGGTGGTGGCTA+TGG - chr4.1:18852133-18852152 MS.gene36438:CDS 55.0%
!! GGTGTTGGTGGACACTTCAG+TGG - chr4.1:18852121-18852140 MS.gene36438:CDS 55.0%
!! TGGTGGTGGCTATGGAACCT+TGG - chr4.1:18852141-18852160 MS.gene36438:CDS 55.0%
CCCCACTACGGGTTCGAATC+TGG + chr4.1:18851901-18851920 None:intergenic 60.0%
GGTGGACACTTCAGTGGTGG+TGG - chr4.1:18852127-18852146 MS.gene36438:CDS 60.0%
! TGGGCTATTAGAGGTGGCGG+AGG - chr4.1:18852265-18852284 MS.gene36438:CDS 60.0%
!!! GGTGGCGGAGGAGCAAGTTT+TGG - chr4.1:18852277-18852296 MS.gene36438:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 18851590 18853215 18851590 ID=MS.gene36438
chr4.1 mRNA 18851590 18853215 18851590 ID=MS.gene36438.t1;Parent=MS.gene36438
chr4.1 exon 18851590 18853215 18851590 ID=MS.gene36438.t1.exon1;Parent=MS.gene36438.t1
chr4.1 CDS 18851590 18853215 18851590 ID=cds.MS.gene36438.t1;Parent=MS.gene36438.t1
Gene Sequence

>MS.gene36438

ATGCCTCTAAGCTCATATTTGTCTATTGCACTTATTGCTATTTTATTTTCATATGCATCTTCTGCAATTGATACTAATACTAATGAAGATAACTTCCTTCAATGTCTTTCTAGTTATTCACATAACTCAACTTCAATCTCTAAAGTTGTGTACACCAAAACCAATTCCTCTTACTCACCAGTACTCAAATTTACAACTCAAAATCTAAGATTTGCATCCTACACAACACCTAAACCACTTGTCATCATCACACCTCTAGAACCTTCCCATATTCAAACAGCCATAATTTGTTCCCAAAATCATGGCCTCCAGATTCGAACCCGTAGTGGGGGCCATGACTTTGAGGGTCTATCCTATGTTTCAAAAGTTCCATTTGTTGTCATTGATCTTGTAAACTTCAAGGAAATTGATGTAGATGTAGAAAGCAAAACTGCTTGGGTTCAGTCTGGTGCAACACTTGGTGAACTTTACTACACAATTAGCCAAAAAAGCCGAAATCTCGGTTTCCCAGCTGGTGCTTGTCCTACAATAGGTGTTGGTGGACACTTCAGTGGTGGTGGCTATGGAACCTTGGTTCGTAAATATGGTCTTGCAGCCGATAATATAATTGATGCTCACATAATTGATGTGAAGGGTAGGTTTCTTGACAGACAAGCAATGGGTGAAGATTTGTTTTGGGCTATTAGAGGTGGCGGAGGAGCAAGTTTTGGAGTCATAATTTCATGGAAGATTAAACTTGTTCAAGTTCCATCAACTGTGACGGTGTTTACTGTTGCAAAAGCATTGGAGCAAAATGCTACAAAGCTTGTTCACAAGTGGCAGTATGTGGCAAGTAAAATTGATGAAAACATAGCCATCAATATTGTCTTTCAAAGGATAAATTCAAGTAAAAAAGGTGAGACAACAATTCTAGCTATATTTCAATCCTTGTTTCTTGGAGGTGTAGATAAACTCATTCCCTTGATGGAAGAAAAGTTTCCTGAGTTGGGTGTGGTTAGAGAAAATTGTATTGAAATGAGTTGGATTGAATCGGTTCTTTACCTTTTTCAATTTCCGAAAGGCGCATTACCTGAAGTGTTGCTTAACAGAACACTGGCTGCAAACAGCCCAAGATTTATTTACAAAGCAAAATCTGATTTTGTGAAAACTCCTATTCCTGAAAATGGATTAGAAGGAATATGGTCTTTGTTTCATGAAGATGGTGCCAAAGGTGCAATGATGATATGGTTTCCTTATGGTGGAATAATGGATACTATTTCAGAGTCTGAAATTCCATTTCCTCATAGAAAAGGAAATTTATACCATATTCATTACCAGGTTGATTGGCAACAGGAAGGTGATGAGGTGGAAAAACTGCACATTAATTGGATTAGAAAAATTTATAATTACATGGAACCTTTTGTTTCAAAGTCTCCAAGAATTGGGTATATCAACTATAGAGACCTTGATATTGGTGTGAATAACATTGATGGTTACACAAGCTACAAGCAAGCTAGTATTTGGGGTGTTAAGTACTTCAAGAACAACTTCAAAAGATTGGCAAAAGTGAAGACCAAAGTTGATCCTCTAAACTTTTTCAGAAATGAACAGAGTATACCTTCTCTTGTGCCCAAGGGACACAAATAA

Protein sequence

>MS.gene36438.t1

MPLSSYLSIALIAILFSYASSAIDTNTNEDNFLQCLSSYSHNSTSISKVVYTKTNSSYSPVLKFTTQNLRFASYTTPKPLVIITPLEPSHIQTAIICSQNHGLQIRTRSGGHDFEGLSYVSKVPFVVIDLVNFKEIDVDVESKTAWVQSGATLGELYYTISQKSRNLGFPAGACPTIGVGGHFSGGGYGTLVRKYGLAADNIIDAHIIDVKGRFLDRQAMGEDLFWAIRGGGGASFGVIISWKIKLVQVPSTVTVFTVAKALEQNATKLVHKWQYVASKIDENIAINIVFQRINSSKKGETTILAIFQSLFLGGVDKLIPLMEEKFPELGVVRENCIEMSWIESVLYLFQFPKGALPEVLLNRTLAANSPRFIYKAKSDFVKTPIPENGLEGIWSLFHEDGAKGAMMIWFPYGGIMDTISESEIPFPHRKGNLYHIHYQVDWQQEGDEVEKLHINWIRKIYNYMEPFVSKSPRIGYINYRDLDIGVNNIDGYTSYKQASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSLVPKGHK