AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028354

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028354.t1 MTR_4g094488 97.273 440 12 0 1 440 104 543 0.0 891
MS.gene028354.t1 MTR_4g094495 83.182 440 74 0 1 440 107 546 0.0 748
MS.gene028354.t1 MTR_4g094478 80.139 433 84 1 1 433 104 534 0.0 716
MS.gene028354.t1 MTR_4g094480 78.864 440 91 1 1 440 104 541 0.0 708
MS.gene028354.t1 MTR_4g094492 78.781 443 87 3 1 440 104 542 0.0 707
MS.gene028354.t1 MTR_4g094418 73.227 437 110 3 1 433 1 434 0.0 662
MS.gene028354.t1 MTR_3g009880 60.185 432 163 3 1 432 96 518 0.0 528
MS.gene028354.t1 MTR_3g009820 59.028 432 168 3 1 432 98 520 0.0 524
MS.gene028354.t1 MTR_3g009760 59.122 433 166 4 1 432 98 520 0.0 522
MS.gene028354.t1 MTR_2g031390 55.172 435 184 6 1 432 101 527 1.19e-175 503
MS.gene028354.t1 MTR_2g031560 56.019 432 184 3 1 432 96 521 1.53e-175 503
MS.gene028354.t1 MTR_2g031420 59.259 432 166 6 1 432 104 525 3.42e-171 491
MS.gene028354.t1 MTR_2g031460 59.165 431 166 5 1 431 104 524 8.75e-170 488
MS.gene028354.t1 MTR_2g031590 55.760 434 188 3 1 433 101 531 1.28e-167 482
MS.gene028354.t1 MTR_4g094518 57.241 435 175 6 1 432 102 528 5.43e-166 478
MS.gene028354.t1 MTR_4g094520 56.552 435 179 6 1 433 105 531 1.04e-165 477
MS.gene028354.t1 MTR_4g094498 55.378 437 186 3 1 437 110 537 6.40e-165 476
MS.gene028354.t1 MTR_2g031490 54.253 435 190 4 1 432 108 536 4.93e-154 447
MS.gene028354.t1 MTR_2g031510 53.103 435 195 4 1 432 110 538 1.29e-151 441
MS.gene028354.t1 MTR_4g057990 52.874 435 195 4 1 434 97 522 8.28e-149 434
MS.gene028354.t1 MTR_4g088355 52.381 441 199 5 1 438 105 537 1.80e-148 433
MS.gene028354.t1 MTR_4g094515 54.691 437 192 3 1 437 723 1153 7.19e-148 450
MS.gene028354.t1 MTR_4g094515 52.403 437 198 5 1 434 111 540 1.71e-139 428
MS.gene028354.t1 MTR_6g017205 53.089 437 196 4 1 435 98 527 1.05e-147 431
MS.gene028354.t1 MTR_4g091200 52.294 436 199 4 1 434 98 526 2.86e-146 427
MS.gene028354.t1 MTR_4g091150 52.765 434 198 5 1 432 110 538 4.73e-146 427
MS.gene028354.t1 MTR_4g091170 49.318 440 198 5 1 439 132 547 2.49e-144 424
MS.gene028354.t1 MTR_4g091190 51.030 437 205 3 2 437 103 531 5.08e-144 422
MS.gene028354.t1 MTR_2g023590 48.848 434 213 3 1 433 40 465 3.51e-135 397
MS.gene028354.t1 MTR_1g076830 45.205 438 223 6 1 431 105 532 1.20e-117 355
MS.gene028354.t1 MTR_3g009850 58.222 225 90 3 209 432 5 226 2.92e-87 266
MS.gene028354.t1 MTR_2g031600 72.028 143 40 0 1 143 102 244 1.25e-61 205
MS.gene028354.t1 MTR_2g031600 52.532 158 72 2 276 433 245 399 2.54e-51 178
MS.gene028354.t1 MTR_2g084370 47.748 111 36 2 25 135 1 89 6.12e-32 117
MS.gene028354.t1 MTR_2g084405 58.750 80 33 0 25 104 1 80 4.42e-24 96.7
MS.gene028354.t1 MTR_8g062280 36.893 103 35 3 333 435 4 76 3.18e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028354.t1 AT2G34790 54.110 438 186 7 1 435 106 531 5.22e-164 473
MS.gene028354.t1 AT5G44400 53.547 437 188 7 1 432 108 534 1.33e-162 469
MS.gene028354.t1 AT5G44440 54.233 437 184 5 1 432 102 527 4.48e-160 462
MS.gene028354.t1 AT1G30760 53.653 438 188 6 1 435 108 533 5.82e-160 462
MS.gene028354.t1 AT1G30760 53.653 438 188 6 1 435 126 551 9.30e-160 462
MS.gene028354.t1 AT4G20820 55.324 432 178 5 1 432 108 524 1.25e-159 461
MS.gene028354.t1 AT5G44440 54.233 437 184 5 1 432 172 597 7.64e-159 462
MS.gene028354.t1 AT4G20860 54.128 436 183 9 1 432 105 527 2.26e-157 456
MS.gene028354.t1 AT5G44360 54.817 436 178 9 1 432 108 528 2.29e-157 456
MS.gene028354.t1 AT5G44360 54.817 436 178 9 1 432 124 544 2.72e-157 456
MS.gene028354.t1 AT5G44410 53.653 438 181 7 1 432 106 527 4.18e-153 445
MS.gene028354.t1 AT5G44390 51.591 440 196 8 1 433 110 539 6.37e-153 445
MS.gene028354.t1 AT5G44380 54.358 436 186 6 1 432 111 537 1.13e-149 436
MS.gene028354.t1 AT5G44380 54.358 436 186 6 1 432 151 577 2.29e-149 437
MS.gene028354.t1 AT1G26410 52.887 433 193 7 1 432 125 547 3.87e-147 430
MS.gene028354.t1 AT1G26390 53.009 432 196 4 1 432 101 525 3.27e-146 427
MS.gene028354.t1 AT1G26380 52.500 440 200 6 1 440 101 531 6.05e-146 427
MS.gene028354.t1 AT1G30710 51.487 437 192 8 1 432 105 526 1.24e-145 426
MS.gene028354.t1 AT1G26420 52.425 433 195 7 1 432 101 523 4.34e-145 424
MS.gene028354.t1 AT1G11770 51.264 435 200 5 1 433 104 528 1.52e-143 421
MS.gene028354.t1 AT1G30700 52.184 435 196 6 1 432 99 524 3.18e-142 417
MS.gene028354.t1 AT1G34575 50.567 441 199 8 1 437 102 527 4.65e-142 416
MS.gene028354.t1 AT1G30730 50.577 433 204 5 1 432 100 523 8.36e-142 416
MS.gene028354.t1 AT4G20840 50.228 438 206 5 3 438 112 539 9.22e-142 416
MS.gene028354.t1 AT1G26400 51.147 436 202 6 1 435 101 526 1.55e-140 412
MS.gene028354.t1 AT4G20800 51.039 433 202 6 1 432 100 523 8.40e-138 405
MS.gene028354.t1 AT1G30720 50.346 433 205 5 1 432 101 524 2.49e-136 402
MS.gene028354.t1 AT1G01980 50.339 443 203 7 2 437 105 537 4.75e-134 396
MS.gene028354.t1 AT4G20830 49.203 439 209 6 3 438 113 540 1.25e-131 390
MS.gene028354.t1 AT4G20830 49.309 434 206 6 3 433 113 535 2.11e-130 388
MS.gene028354.t1 AT1G30740 49.091 440 204 7 1 433 104 530 2.69e-129 384
MS.gene028354.t1 AT1G30740 49.091 440 204 7 1 433 101 527 3.11e-129 384
MS.gene028354.t1 AT2G34810 46.667 435 225 4 1 432 107 537 4.82e-125 374

Find 93 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATAAGCATGCTAGTATT+TGG 0.193317 4.2:-18018494 MS.gene028354:CDS
AATCCTTCTAAACCAGTTTC+AGG 0.221499 4.2:+18018819 None:intergenic
GTTTCAAGTGGTTCGCCTTC+TGG 0.231675 4.2:+18018912 None:intergenic
CCTTTGCAAGATAATATTAA+TGG 0.233800 4.2:+18019124 None:intergenic
TAGAAAACTTTATAGTTATA+TGG 0.249330 4.2:-18018604 MS.gene028354:CDS
CAATGGGTGAAGATTTGTTT+TGG 0.263104 4.2:-18019322 MS.gene028354:CDS
TTATTTCAATCCTTGTTTCT+AGG 0.269621 4.2:-18019050 MS.gene028354:CDS
CTAATGGTATTGTTTCCTTA+TGG 0.282122 4.2:-18018759 MS.gene028354:CDS
AAACTGGTTTAGAAGGATTA+TGG 0.294935 4.2:-18018815 MS.gene028354:CDS
CTATAAGCATGCTAGTATTT+GGG 0.298519 4.2:-18018493 MS.gene028354:CDS
CGCCTTCTGGAAACCGAAAA+AGG 0.314622 4.2:+18018925 None:intergenic
ATTCCTGAAACTGGTTTAGA+AGG 0.316827 4.2:-18018822 MS.gene028354:CDS
CACTTCAGTGGTGGTGGATA+TGG 0.317127 4.2:-18019434 MS.gene028354:CDS
TCTAAACCAGTTTCAGGAAT+AGG 0.319812 4.2:+18018825 None:intergenic
AATTATAGAGACCTTGATAT+TGG 0.322332 4.2:-18018543 MS.gene028354:CDS
AAAATTCCTATTCCTGAAAC+TGG 0.323303 4.2:-18018831 MS.gene028354:CDS
GGTGGTGGAGGAGCTAGTTT+TGG 0.332734 4.2:-18019290 MS.gene028354:CDS
AAATAACCTCTTACCCTTGA+TGG 0.335087 4.2:-18019021 MS.gene028354:CDS
ATTGGTGTGAATAACATTAA+TGG 0.338315 4.2:-18018525 MS.gene028354:CDS
ATTCCATTTCCACATAGATA+TGG 0.343229 4.2:-18018705 MS.gene028354:CDS
TCATTTCTGAAGAAGTTTAG+AGG 0.357451 4.2:+18018411 None:intergenic
GGAACCTTGTTGCGTAAATA+TGG 0.364610 4.2:-18019413 MS.gene028354:CDS
TGGAAAAGTTGCACATCAAT+TGG 0.370174 4.2:-18018629 MS.gene028354:CDS
CTTGGTGACTTTGAAACAAA+AGG 0.372572 4.2:+18018579 None:intergenic
AAAGTTTCCTGAACTTGGTT+TGG 0.379762 4.2:-18018994 MS.gene028354:CDS
CAAGAACAACTTCAAAAGAT+TGG 0.382060 4.2:-18018457 MS.gene028354:CDS
GTTTCCTTATGGTGGCATAA+TGG 0.388858 4.2:-18018748 MS.gene028354:CDS
GTTCCATATCTATGTGGAAA+TGG 0.394166 4.2:+18018702 None:intergenic
GAAATTCTATTTGCGTCCCT+TGG 0.394677 4.2:+18018365 None:intergenic
GTAAACACCGTCACAGTTGA+TGG 0.407633 4.2:+18019230 None:intergenic
GACAAAATCAGATTTCGCTT+TGG 0.411110 4.2:+18018854 None:intergenic
GTGAGCATCAATGATGTTAT+CGG 0.419983 4.2:+18019382 None:intergenic
AAAACTCTTGGTTTCCCTGC+AGG 0.420339 4.2:-18019485 MS.gene028354:CDS
TCTCTAACCAAACCAAGTTC+AGG 0.420493 4.2:+18018987 None:intergenic
TTTCTTCCATCAAGGGTAAG+AGG 0.424421 4.2:+18019015 None:intergenic
TTGGTGTGAATAACATTAAT+GGG 0.432181 4.2:-18018524 MS.gene028354:CDS
AAAACTGCTTGGGTTCAATC+TGG 0.435993 4.2:-18019551 MS.gene028354:CDS
GAAGAAAAGTTTCCTGAACT+TGG 0.447161 4.2:-18018999 MS.gene028354:CDS
AGCCAAGAAAGCAAAACTCT+TGG 0.456316 4.2:-18019497 MS.gene028354:CDS
AAAGCTAGTACTGTTGACTT+TGG 0.458454 4.2:+18019071 None:intergenic
AAGATTGTGTTGAAATGAGT+TGG 0.466692 4.2:-18018965 MS.gene028354:CDS
GTGAGATCAATGATGACAAA+AGG 0.482657 4.2:+18019608 None:intergenic
TGTTATTCACACCAATATCA+AGG 0.485733 4.2:+18018532 None:intergenic
TGGGCTATTAGAGGTGGTGG+AGG 0.490480 4.2:-18019302 MS.gene028354:CDS
TGTAGAAAACAAAACTGCTT+GGG 0.493208 4.2:-18019561 MS.gene028354:CDS
TGGTGCGGAAGAGGTACTAA+TGG 0.495510 4.2:-18018775 MS.gene028354:CDS
TAATTAATATATGCAGCTCT+TGG 0.501793 4.2:+18018561 None:intergenic
TTATCCATTATGCCACCATA+AGG 0.506968 4.2:+18018744 None:intergenic
TGAAATGAGTTGGATTGAAT+CGG 0.514164 4.2:-18018955 MS.gene028354:CDS
ACAGTAGGACAAACACCTGC+AGG 0.514616 4.2:+18019470 None:intergenic
ATGGTATTGTTTCCTTATGG+TGG 0.522116 4.2:-18018756 MS.gene028354:CDS
TAGCGGTGGCCATGACTTCG+AGG 0.526765 4.2:-18019654 MS.gene028354:CDS
TTTCTTGACAAAGAAGCAAT+GGG 0.528413 4.2:-18019338 MS.gene028354:CDS
TGGCCTATGTTTGATGAAGA+TGG 0.529049 4.2:-18018795 MS.gene028354:CDS
CTGTTGAGCAACGTTTCAAG+TGG 0.530743 4.2:+18018900 None:intergenic
TGTCCTACTGTAGGTGTTGG+TGG 0.531106 4.2:-18019458 MS.gene028354:CDS
ATGTAGAAAACAAAACTGCT+TGG 0.538313 4.2:-18019562 MS.gene028354:CDS
GTTTACTGTTCCAAGAACAT+TGG 0.538372 4.2:-18019213 MS.gene028354:CDS
GCAGGTGTTTGTCCTACTGT+AGG 0.539536 4.2:-18019467 MS.gene028354:CDS
AGGATAGACCCTCGAAGTCA+TGG 0.545471 4.2:+18019645 None:intergenic
GTTTGTCCTACTGTAGGTGT+TGG 0.546834 4.2:-18019461 MS.gene028354:CDS
TATACCTTCTCATGTGTCCA+AGG 0.549356 4.2:-18018382 MS.gene028354:CDS
CGTCCCTTGGACACATGAGA+AGG 0.549392 4.2:+18018378 None:intergenic
GTTTCTTGACAAAGAAGCAA+TGG 0.553824 4.2:-18019339 MS.gene028354:CDS
TGATGAAGATGGTGCGGAAG+AGG 0.557116 4.2:-18018784 MS.gene028354:CDS
GTTCAATCTGGTGCAACGCT+TGG 0.557989 4.2:-18019539 MS.gene028354:CDS
CAACAGAACACTAGCTGCAA+AGG 0.565270 4.2:-18018883 MS.gene028354:CDS
GGTGGACACTTCAGTGGTGG+TGG 0.566542 4.2:-18019440 MS.gene028354:CDS
TATAAGGTTCCATATCTATG+TGG 0.572757 4.2:+18018696 None:intergenic
CCATTAATATTATCTTGCAA+AGG 0.573285 4.2:-18019124 MS.gene028354:CDS
AAATTCAGTATGCAGTGCAC+TGG 0.574982 4.2:-18018671 MS.gene028354:CDS
CAACAAAGCTTGTTCACAAG+TGG 0.578289 4.2:-18019181 MS.gene028354:CDS
ACATAATTGATGTGAAAGGT+AGG 0.586594 4.2:-18019361 MS.gene028354:CDS
TATAAGCATGCTAGTATTTG+GGG 0.597569 4.2:-18018492 MS.gene028354:CDS
AAGACCATATTTACGCAACA+AGG 0.597900 4.2:+18019409 None:intergenic
GCACCATCTTCATCAAACAT+AGG 0.602030 4.2:+18018792 None:intergenic
ATTTACACTTCCTAGAAACA+AGG 0.611724 4.2:+18019040 None:intergenic
CAAATTCGAATTCGTAGCGG+TGG 0.611749 4.2:-18019668 MS.gene028354:CDS
GCATCAAGAAGGTGATGAGG+TGG 0.615161 4.2:-18018649 MS.gene028354:CDS
TCAAGTTCCATCAACTGTGA+CGG 0.625682 4.2:-18019237 MS.gene028354:CDS
GTTGGTGGACACTTCAGTGG+TGG 0.625730 4.2:-18019443 MS.gene028354:CDS
GCAGTGCACTGGCATCAAGA+AGG 0.625900 4.2:-18018660 MS.gene028354:CDS
AGCGGTGGCCATGACTTCGA+GGG 0.627631 4.2:-18019653 MS.gene028354:CDS
GATTTAAATTCAAGTAAACA+AGG 0.630011 4.2:-18019098 MS.gene028354:CDS
GTTGCGTAAATATGGTCTTG+CGG 0.634179 4.2:-18019405 MS.gene028354:CDS
GGTGTTGGTGGACACTTCAG+TGG 0.638405 4.2:-18019446 MS.gene028354:CDS
ATACCTTCTCATGTGTCCAA+GGG 0.642295 4.2:-18018381 MS.gene028354:CDS
CAGTAGGACAAACACCTGCA+GGG 0.647987 4.2:+18019471 None:intergenic
GCTCACATAATTGATGTGAA+AGG 0.660187 4.2:-18019365 MS.gene028354:CDS
TGTCCACCAACACCTACAGT+AGG 0.663218 4.2:+18019455 None:intergenic
CTGGCATCAAGAAGGTGATG+AGG 0.689653 4.2:-18018652 MS.gene028354:CDS
TATGTTTGATGAAGATGGTG+CGG 0.701729 4.2:-18018790 MS.gene028354:CDS
ATGCAAATTCGAATTCGTAG+CGG 0.744504 4.2:-18019671 MS.gene028354:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGAAAACTTTATAGTTATA+TGG - chr4.2:18019438-18019457 MS.gene028354:CDS 15.0%
!! GATTTAAATTCAAGTAAACA+AGG - chr4.2:18018944-18018963 MS.gene028354:CDS 20.0%
! AATTATAGAGACCTTGATAT+TGG - chr4.2:18019499-18019518 MS.gene028354:CDS 25.0%
! ATTGGTGTGAATAACATTAA+TGG - chr4.2:18019517-18019536 MS.gene028354:CDS 25.0%
! CCATTAATATTATCTTGCAA+AGG - chr4.2:18018918-18018937 MS.gene028354:CDS 25.0%
! CCTTTGCAAGATAATATTAA+TGG + chr4.2:18018921-18018940 None:intergenic 25.0%
! TAATTAATATATGCAGCTCT+TGG + chr4.2:18019484-18019503 None:intergenic 25.0%
! TTGGTGTGAATAACATTAAT+GGG - chr4.2:18019518-18019537 MS.gene028354:CDS 25.0%
!! TGCATACTGAATTTTGTATA+AGG + chr4.2:18019365-18019384 None:intergenic 25.0%
!! TTATTTCAATCCTTGTTTCT+AGG - chr4.2:18018992-18019011 MS.gene028354:CDS 25.0%
!!! AAAAGGAACTTTTGAAACAA+AGG + chr4.2:18018420-18018439 None:intergenic 25.0%
AAAATTCCTATTCCTGAAAC+TGG - chr4.2:18019211-18019230 MS.gene028354:CDS 30.0%
AAGATTGTGTTGAAATGAGT+TGG - chr4.2:18019077-18019096 MS.gene028354:CDS 30.0%
ACATAATTGATGTGAAAGGT+AGG - chr4.2:18018681-18018700 MS.gene028354:CDS 30.0%
ATGTAGAAAACAAAACTGCT+TGG - chr4.2:18018480-18018499 MS.gene028354:CDS 30.0%
ATTCCATTTCCACATAGATA+TGG - chr4.2:18019337-18019356 MS.gene028354:CDS 30.0%
ATTTACACTTCCTAGAAACA+AGG + chr4.2:18019005-18019024 None:intergenic 30.0%
CAAGAACAACTTCAAAAGAT+TGG - chr4.2:18019585-18019604 MS.gene028354:CDS 30.0%
CTAATGGTATTGTTTCCTTA+TGG - chr4.2:18019283-18019302 MS.gene028354:CDS 30.0%
CTATAAGCATGCTAGTATTT+GGG - chr4.2:18019549-18019568 MS.gene028354:CDS 30.0%
TATAAGCATGCTAGTATTTG+GGG - chr4.2:18019550-18019569 MS.gene028354:CDS 30.0%
TATAAGGTTCCATATCTATG+TGG + chr4.2:18019349-18019368 None:intergenic 30.0%
TGTAGAAAACAAAACTGCTT+GGG - chr4.2:18018481-18018500 MS.gene028354:CDS 30.0%
TGTTATTCACACCAATATCA+AGG + chr4.2:18019513-18019532 None:intergenic 30.0%
TTTCTTGACAAAGAAGCAAT+GGG - chr4.2:18018704-18018723 MS.gene028354:CDS 30.0%
! AAACTGGTTTAGAAGGATTA+TGG - chr4.2:18019227-18019246 MS.gene028354:CDS 30.0%
! TCATTTCTGAAGAAGTTTAG+AGG + chr4.2:18019634-18019653 None:intergenic 30.0%
! TGAAATGAGTTGGATTGAAT+CGG - chr4.2:18019087-18019106 MS.gene028354:CDS 30.0%
!! AATCGGTTCTTTACCTTTTT+CGG - chr4.2:18019104-18019123 MS.gene028354:CDS 30.0%
!! AATGGGTGAAGATTTGTTTT+GGG - chr4.2:18018721-18018740 MS.gene028354:CDS 30.0%
AAAGTTTCCTGAACTTGGTT+TGG - chr4.2:18019048-18019067 MS.gene028354:CDS 35.0%
AAATAACCTCTTACCCTTGA+TGG - chr4.2:18019021-18019040 MS.gene028354:CDS 35.0%
AAGACCATATTTACGCAACA+AGG + chr4.2:18018636-18018655 None:intergenic 35.0%
AATCCTTCTAAACCAGTTTC+AGG + chr4.2:18019226-18019245 None:intergenic 35.0%
ATGCAAATTCGAATTCGTAG+CGG - chr4.2:18018371-18018390 MS.gene028354:CDS 35.0%
ATGGTATTGTTTCCTTATGG+TGG - chr4.2:18019286-18019305 MS.gene028354:CDS 35.0%
GAAGAAAAGTTTCCTGAACT+TGG - chr4.2:18019043-18019062 MS.gene028354:CDS 35.0%
GACAAAATCAGATTTCGCTT+TGG + chr4.2:18019191-18019210 None:intergenic 35.0%
GCTATAAGCATGCTAGTATT+TGG - chr4.2:18019548-18019567 MS.gene028354:CDS 35.0%
GCTCACATAATTGATGTGAA+AGG - chr4.2:18018677-18018696 MS.gene028354:CDS 35.0%
GTGAGATCAATGATGACAAA+AGG + chr4.2:18018437-18018456 None:intergenic 35.0%
GTGAGCATCAATGATGTTAT+CGG + chr4.2:18018663-18018682 None:intergenic 35.0%
GTTCCATATCTATGTGGAAA+TGG + chr4.2:18019343-18019362 None:intergenic 35.0%
GTTTACTGTTCCAAGAACAT+TGG - chr4.2:18018829-18018848 MS.gene028354:CDS 35.0%
GTTTCTTGACAAAGAAGCAA+TGG - chr4.2:18018703-18018722 MS.gene028354:CDS 35.0%
TATGTTTGATGAAGATGGTG+CGG - chr4.2:18019252-18019271 MS.gene028354:CDS 35.0%
TCTAAACCAGTTTCAGGAAT+AGG + chr4.2:18019220-18019239 None:intergenic 35.0%
TGGAAAAGTTGCACATCAAT+TGG - chr4.2:18019413-18019432 MS.gene028354:CDS 35.0%
TTATCCATTATGCCACCATA+AGG + chr4.2:18019301-18019320 None:intergenic 35.0%
! AACCAAGAGTTTTGCTTTCT+TGG + chr4.2:18018550-18018569 None:intergenic 35.0%
! AGGAAACTTTTCTTCCATCA+AGG + chr4.2:18019038-18019057 None:intergenic 35.0%
! ATTCCTGAAACTGGTTTAGA+AGG - chr4.2:18019220-18019239 MS.gene028354:CDS 35.0%
! GCATTTTGTTCCAATGTTCT+TGG + chr4.2:18018842-18018861 None:intergenic 35.0%
! GGAAACTTTTCTTCCATCAA+GGG + chr4.2:18019037-18019056 None:intergenic 35.0%
!! AAAGCTAGTACTGTTGACTT+TGG + chr4.2:18018974-18018993 None:intergenic 35.0%
!! CAATGGGTGAAGATTTGTTT+TGG - chr4.2:18018720-18018739 MS.gene028354:CDS 35.0%
!! CTTGGTGACTTTGAAACAAA+AGG + chr4.2:18019466-18019485 None:intergenic 35.0%
!!! GATTTGTTTTGGGCTATTAG+AGG - chr4.2:18018731-18018750 MS.gene028354:CDS 35.0%
!!! GTTTTGGTGTCATAGTTTCA+TGG - chr4.2:18018768-18018787 MS.gene028354:CDS 35.0%
AAAACTGCTTGGGTTCAATC+TGG - chr4.2:18018491-18018510 MS.gene028354:CDS 40.0%
AAATTCAGTATGCAGTGCAC+TGG - chr4.2:18019371-18019390 MS.gene028354:CDS 40.0%
AGCCAAGAAAGCAAAACTCT+TGG - chr4.2:18018545-18018564 MS.gene028354:CDS 40.0%
ATACCTTCTCATGTGTCCAA+GGG - chr4.2:18019661-18019680 MS.gene028354:CDS 40.0%
GCACCATCTTCATCAAACAT+AGG + chr4.2:18019253-18019272 None:intergenic 40.0%
GGAACCTTGTTGCGTAAATA+TGG - chr4.2:18018629-18018648 MS.gene028354:CDS 40.0%
GTTTCCTTATGGTGGCATAA+TGG - chr4.2:18019294-18019313 MS.gene028354:CDS 40.0%
TATACCTTCTCATGTGTCCA+AGG - chr4.2:18019660-18019679 MS.gene028354:CDS 40.0%
TCAAGTTCCATCAACTGTGA+CGG - chr4.2:18018805-18018824 MS.gene028354:CDS 40.0%
TCTCTAACCAAACCAAGTTC+AGG + chr4.2:18019058-18019077 None:intergenic 40.0%
TGGCCTATGTTTGATGAAGA+TGG - chr4.2:18019247-18019266 MS.gene028354:CDS 40.0%
TTTCTTCCATCAAGGGTAAG+AGG + chr4.2:18019030-18019049 None:intergenic 40.0%
! CAACAAAGCTTGTTCACAAG+TGG - chr4.2:18018861-18018880 MS.gene028354:CDS 40.0%
! GTTGCGTAAATATGGTCTTG+CGG - chr4.2:18018637-18018656 MS.gene028354:CDS 40.0%
!!! TACCTTTTTCGGTTTCCAGA+AGG - chr4.2:18019115-18019134 MS.gene028354:CDS 40.0%
!!! TTGTTTTGGGCTATTAGAGG+TGG - chr4.2:18018734-18018753 MS.gene028354:CDS 40.0%
AAAACTCTTGGTTTCCCTGC+AGG - chr4.2:18018557-18018576 MS.gene028354:CDS 45.0%
CAAATTCGAATTCGTAGCGG+TGG - chr4.2:18018374-18018393 MS.gene028354:CDS 45.0%
CAACAGAACACTAGCTGCAA+AGG - chr4.2:18019159-18019178 MS.gene028354:CDS 45.0%
CTGTTGAGCAACGTTTCAAG+TGG + chr4.2:18019145-18019164 None:intergenic 45.0%
GTAAACACCGTCACAGTTGA+TGG + chr4.2:18018815-18018834 None:intergenic 45.0%
GTTTGTCCTACTGTAGGTGT+TGG - chr4.2:18018581-18018600 MS.gene028354:CDS 45.0%
! TTTTGGGCTATTAGAGGTGG+TGG - chr4.2:18018737-18018756 MS.gene028354:CDS 45.0%
ACAGTAGGACAAACACCTGC+AGG + chr4.2:18018575-18018594 None:intergenic 50.0%
AGGATAGACCCTCGAAGTCA+TGG + chr4.2:18018400-18018419 None:intergenic 50.0%
CAGTAGGACAAACACCTGCA+GGG + chr4.2:18018574-18018593 None:intergenic 50.0%
CTGGCATCAAGAAGGTGATG+AGG - chr4.2:18019390-18019409 MS.gene028354:CDS 50.0%
GCAGGTGTTTGTCCTACTGT+AGG - chr4.2:18018575-18018594 MS.gene028354:CDS 50.0%
GCATCAAGAAGGTGATGAGG+TGG - chr4.2:18019393-18019412 MS.gene028354:CDS 50.0%
GTTCAATCTGGTGCAACGCT+TGG - chr4.2:18018503-18018522 MS.gene028354:CDS 50.0%
TGATGAAGATGGTGCGGAAG+AGG - chr4.2:18019258-18019277 MS.gene028354:CDS 50.0%
TGTCCACCAACACCTACAGT+AGG + chr4.2:18018590-18018609 None:intergenic 50.0%
! CGCCTTCTGGAAACCGAAAA+AGG + chr4.2:18019120-18019139 None:intergenic 50.0%
! GTTTCAAGTGGTTCGCCTTC+TGG + chr4.2:18019133-18019152 None:intergenic 50.0%
!! CACTTCAGTGGTGGTGGATA+TGG - chr4.2:18018608-18018627 MS.gene028354:CDS 50.0%
!! TGGTGCGGAAGAGGTACTAA+TGG - chr4.2:18019267-18019286 MS.gene028354:CDS 50.0%
!! TGTCCTACTGTAGGTGTTGG+TGG - chr4.2:18018584-18018603 MS.gene028354:CDS 50.0%
CGTCCCTTGGACACATGAGA+AGG + chr4.2:18019667-18019686 None:intergenic 55.0%
! GCAGTGCACTGGCATCAAGA+AGG - chr4.2:18019382-18019401 MS.gene028354:CDS 55.0%
! GTTGGTGGACACTTCAGTGG+TGG - chr4.2:18018599-18018618 MS.gene028354:CDS 55.0%
! TGGGCTATTAGAGGTGGTGG+AGG - chr4.2:18018740-18018759 MS.gene028354:CDS 55.0%
!! GGTGTTGGTGGACACTTCAG+TGG - chr4.2:18018596-18018615 MS.gene028354:CDS 55.0%
!!! GGTGGTGGAGGAGCTAGTTT+TGG - chr4.2:18018752-18018771 MS.gene028354:CDS 55.0%
AGCGGTGGCCATGACTTCGA+GGG - chr4.2:18018389-18018408 MS.gene028354:CDS 60.0%
GGTGGACACTTCAGTGGTGG+TGG - chr4.2:18018602-18018621 MS.gene028354:CDS 60.0%
TAGCGGTGGCCATGACTTCG+AGG - chr4.2:18018388-18018407 MS.gene028354:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 18018371 18019693 18018371 ID=MS.gene028354
chr4.2 mRNA 18018371 18019693 18018371 ID=MS.gene028354.t1;Parent=MS.gene028354
chr4.2 exon 18018371 18019693 18018371 ID=MS.gene028354.t1.exon1;Parent=MS.gene028354.t1
chr4.2 CDS 18018371 18019693 18018371 ID=cds.MS.gene028354.t1;Parent=MS.gene028354.t1
Gene Sequence

>MS.gene028354

ATGCAAATTCGAATTCGTAGCGGTGGCCATGACTTCGAGGGTCTATCCTTTGTTTCAAAAGTTCCTTTTGTCATCATTGATCTCACAAACTTTAGAGAAATTGATGTAGATGTAGAAAACAAAACTGCTTGGGTTCAATCTGGTGCAACGCTTGGTGAACTTTACTACAAAATTAGCCAAGAAAGCAAAACTCTTGGTTTCCCTGCAGGTGTTTGTCCTACTGTAGGTGTTGGTGGACACTTCAGTGGTGGTGGATATGGAACCTTGTTGCGTAAATATGGTCTTGCGGCCGATAACATCATTGATGCTCACATAATTGATGTGAAAGGTAGGTTTCTTGACAAAGAAGCAATGGGTGAAGATTTGTTTTGGGCTATTAGAGGTGGTGGAGGAGCTAGTTTTGGTGTCATAGTTTCATGGAAGATTAAACTTGTTCAAGTTCCATCAACTGTGACGGTGTTTACTGTTCCAAGAACATTGGAACAAAATGCAACAAAGCTTGTTCACAAGTGGCAGTTTGTAGCTCATAAACTTGAAGAAAACTTAGCCATTAATATTATCTTGCAAAGGCTAGATTTAAATTCAAGTAAACAAGGTGAGCCAAAGTCAACAGTACTAGCTTTATTTCAATCCTTGTTTCTAGGAAGTGTAAATAACCTCTTACCCTTGATGGAAGAAAAGTTTCCTGAACTTGGTTTGGTTAGAGAAGATTGTGTTGAAATGAGTTGGATTGAATCGGTTCTTTACCTTTTTCGGTTTCCAGAAGGCGAACCACTTGAAACGTTGCTCAACAGAACACTAGCTGCAAAGGATAATTCCAAAGCGAAATCTGATTTTGTCAAAATTCCTATTCCTGAAACTGGTTTAGAAGGATTATGGCCTATGTTTGATGAAGATGGTGCGGAAGAGGTACTAATGGTATTGTTTCCTTATGGTGGCATAATGGATAAGATTTCAGAATCTGAAATTCCATTTCCACATAGATATGGAACCTTATACAAAATTCAGTATGCAGTGCACTGGCATCAAGAAGGTGATGAGGTGGAAAAGTTGCACATCAATTGGATTAGAAAACTTTATAGTTATATGGAACCTTTTGTTTCAAAGTCACCAAGAGCTGCATATATTAATTATAGAGACCTTGATATTGGTGTGAATAACATTAATGGGTACACAAGCTATAAGCATGCTAGTATTTGGGGTGTTAAGTACTTCAAGAACAACTTCAAAAGATTGGCAAAAGTGAAGACAAAAGTTGATCCTCTAAACTTCTTCAGAAATGAACAAAGTATACCTTCTCATGTGTCCAAGGGACGCAAATAG
Protein sequence

>MS.gene028354.t1

MQIRIRSGGHDFEGLSFVSKVPFVIIDLTNFREIDVDVENKTAWVQSGATLGELYYKISQESKTLGFPAGVCPTVGVGGHFSGGGYGTLLRKYGLAADNIIDAHIIDVKGRFLDKEAMGEDLFWAIRGGGGASFGVIVSWKIKLVQVPSTVTVFTVPRTLEQNATKLVHKWQFVAHKLEENLAINIILQRLDLNSSKQGEPKSTVLALFQSLFLGSVNNLLPLMEEKFPELGLVREDCVEMSWIESVLYLFRFPEGEPLETLLNRTLAAKDNSKAKSDFVKIPIPETGLEGLWPMFDEDGAEEVLMVLFPYGGIMDKISESEIPFPHRYGTLYKIQYAVHWHQEGDEVEKLHINWIRKLYSYMEPFVSKSPRAAYINYRDLDIGVNNINGYTSYKHASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSHVSKGRK