AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35114


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35114.t1 MTR_4g094520 98.493 531 8 0 1 531 6 536 0.0 1087
MS.gene35114.t1 MTR_2g031390 71.132 530 152 1 1 529 2 531 0.0 777
MS.gene35114.t1 MTR_4g094518 70.472 508 143 2 26 529 28 532 0.0 712
MS.gene35114.t1 MTR_3g009820 51.136 528 247 8 5 527 1 522 0.0 544
MS.gene35114.t1 MTR_3g009760 51.136 528 247 8 5 527 1 522 0.0 541
MS.gene35114.t1 MTR_4g094488 52.700 537 237 9 4 525 1 535 0.0 540
MS.gene35114.t1 MTR_4g094492 50.755 530 251 6 5 527 10 536 0.0 539
MS.gene35114.t1 MTR_2g031590 49.713 523 255 4 12 528 13 533 0.0 536
MS.gene35114.t1 MTR_4g094478 51.955 537 243 7 4 527 1 535 0.0 535
MS.gene35114.t1 MTR_4g094498 49.814 538 255 5 1 527 1 534 0.0 531
MS.gene35114.t1 MTR_4g094480 50.758 528 251 6 4 525 9 533 0.0 530
MS.gene35114.t1 MTR_2g031560 48.381 525 265 5 7 527 1 523 0.0 530
MS.gene35114.t1 MTR_3g009880 50.951 526 249 7 5 527 1 520 0.0 530
MS.gene35114.t1 MTR_2g031420 52.756 508 234 5 21 527 25 527 0.0 523
MS.gene35114.t1 MTR_4g094495 50.473 529 250 7 7 525 12 538 0.0 521
MS.gene35114.t1 MTR_2g031460 49.713 523 255 6 8 527 10 527 1.66e-178 513
MS.gene35114.t1 MTR_4g091150 51.473 509 234 8 27 527 37 540 7.14e-174 501
MS.gene35114.t1 MTR_4g094515 50.189 530 254 4 7 528 624 1151 8.57e-174 521
MS.gene35114.t1 MTR_4g094515 48.282 524 257 6 13 528 24 541 2.39e-156 476
MS.gene35114.t1 MTR_4g094418 54.462 437 188 6 100 527 1 435 6.52e-171 497
MS.gene35114.t1 MTR_2g031510 49.412 510 250 5 24 528 35 541 9.60e-171 494
MS.gene35114.t1 MTR_2g031490 48.381 525 258 6 14 528 18 539 1.26e-167 486
MS.gene35114.t1 MTR_4g091200 47.368 532 262 8 1 525 4 524 1.76e-167 485
MS.gene35114.t1 MTR_6g017205 48.000 525 257 8 7 525 10 524 1.39e-166 483
MS.gene35114.t1 MTR_4g091190 46.792 530 270 7 1 525 4 526 1.53e-165 480
MS.gene35114.t1 MTR_4g088355 48.611 504 247 7 29 525 33 531 4.00e-163 474
MS.gene35114.t1 MTR_4g057990 46.970 528 269 7 1 525 1 520 4.62e-163 473
MS.gene35114.t1 MTR_4g091170 47.368 456 213 7 75 525 107 540 2.08e-150 443
MS.gene35114.t1 MTR_2g023590 47.097 465 239 5 64 525 4 464 9.22e-148 432
MS.gene35114.t1 MTR_1g076830 39.429 525 302 9 15 530 21 538 3.77e-120 364
MS.gene35114.t1 MTR_3g009850 52.193 228 107 2 302 527 1 228 1.22e-79 249
MS.gene35114.t1 MTR_2g031600 53.648 233 106 1 12 244 14 244 1.40e-79 255
MS.gene35114.t1 MTR_2g031600 47.531 162 84 1 368 528 240 401 3.17e-47 169
MS.gene35114.t1 MTR_2g084370 41.441 111 43 2 126 236 1 89 4.82e-26 102
MS.gene35114.t1 MTR_8g062280 46.392 97 24 1 428 524 4 72 2.07e-22 91.7
MS.gene35114.t1 MTR_2g084405 50.633 79 39 0 126 204 1 79 2.86e-19 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35114.t1 AT1G30760 64.752 505 171 3 24 525 48 548 0.0 665
MS.gene35114.t1 AT1G30760 64.752 505 171 3 24 525 30 530 0.0 664
MS.gene35114.t1 AT2G34790 62.141 523 190 4 6 525 11 528 0.0 662
MS.gene35114.t1 AT5G44400 61.017 531 197 7 4 527 9 536 0.0 655
MS.gene35114.t1 AT5G44390 56.262 535 223 7 3 529 11 542 0.0 605
MS.gene35114.t1 AT5G44380 57.558 516 212 6 18 528 67 580 0.0 579
MS.gene35114.t1 AT5G44380 57.558 516 212 6 18 528 27 540 0.0 579
MS.gene35114.t1 AT1G30700 50.095 525 256 4 7 528 6 527 6.17e-177 509
MS.gene35114.t1 AT5G44360 48.496 532 259 9 5 529 9 532 6.61e-170 491
MS.gene35114.t1 AT5G44360 48.496 532 259 9 5 529 25 548 8.78e-170 491
MS.gene35114.t1 AT1G26380 48.864 528 258 7 6 527 4 525 8.54e-169 488
MS.gene35114.t1 AT4G20860 49.126 515 246 9 22 527 22 529 2.69e-168 487
MS.gene35114.t1 AT4G20800 49.203 502 249 4 27 526 27 524 1.12e-166 483
MS.gene35114.t1 AT4G20820 47.547 530 261 8 3 527 9 526 1.05e-165 481
MS.gene35114.t1 AT1G26400 47.826 529 267 6 1 526 1 523 8.87e-165 478
MS.gene35114.t1 AT1G26420 48.000 525 260 6 14 529 7 527 9.80e-165 478
MS.gene35114.t1 AT1G11770 47.103 535 267 7 5 528 1 530 1.28e-163 475
MS.gene35114.t1 AT1G26390 49.008 504 251 4 29 529 29 529 8.73e-163 473
MS.gene35114.t1 AT1G26410 47.913 503 256 5 29 529 53 551 1.47e-161 471
MS.gene35114.t1 AT1G34575 45.180 529 264 10 7 525 10 522 2.30e-160 467
MS.gene35114.t1 AT1G30730 46.110 527 275 6 4 525 1 523 2.71e-159 464
MS.gene35114.t1 AT4G20840 48.323 507 253 6 25 527 34 535 4.89e-159 464
MS.gene35114.t1 AT1G30710 45.247 526 268 9 12 527 13 528 2.33e-158 462
MS.gene35114.t1 AT5G44440 45.301 532 277 7 1 525 3 527 1.15e-156 457
MS.gene35114.t1 AT1G30720 46.784 513 266 5 16 525 16 524 1.90e-156 457
MS.gene35114.t1 AT5G44440 45.301 532 277 7 1 525 73 597 2.10e-155 457
MS.gene35114.t1 AT1G30740 47.419 523 258 8 15 528 15 529 2.76e-151 444
MS.gene35114.t1 AT1G30740 47.419 523 258 8 15 528 18 532 2.91e-151 444
MS.gene35114.t1 AT5G44410 47.059 544 252 12 1 525 1 527 4.96e-151 443
MS.gene35114.t1 AT4G20830 47.451 510 259 6 22 527 32 536 4.39e-150 441
MS.gene35114.t1 AT1G01980 47.093 516 259 8 22 528 25 535 1.09e-149 440
MS.gene35114.t1 AT4G20830 47.451 510 259 6 22 527 32 536 1.85e-149 441
MS.gene35114.t1 AT2G34810 44.788 518 268 9 22 527 28 539 8.43e-143 422

Find 114 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGGGAGAAGACCTATTT+TGG 0.145172 4.4:-19828997 MS.gene35114:CDS
TTGCTAACTCTTGGGGTTAT+AGG 0.226534 4.4:-19828184 MS.gene35114:CDS
TACAAAATTCAGTACTTATC+TGG 0.232561 4.4:-19828368 MS.gene35114:CDS
AGGGAATTGAGGGAAGTTTC+TGG 0.233163 4.4:+19828506 None:intergenic
GATTGAAGTGTAAGACTTAT+TGG 0.240801 4.4:+19829498 None:intergenic
GCAGGCCTTTGTACATCTTT+AGG 0.242864 4.4:-19829142 MS.gene35114:CDS
TATAGATTGAAGAGGGAAAT+TGG 0.267535 4.4:+19829527 None:intergenic
TTTCTTGTTAAACCCAATTC+AGG 0.270282 4.4:+19828674 None:intergenic
TTTCCCTGGAGCAGAACTTC+TGG 0.282559 4.4:+19828584 None:intergenic
TTGATCCATCTAATTTCTTT+AGG 0.288821 4.4:-19828115 MS.gene35114:CDS
GTCTTTCTCTTGCTAACTCT+TGG 0.294277 4.4:-19828193 MS.gene35114:CDS
AATTATAGAGATTTGGATAT+AGG 0.299944 4.4:-19828239 MS.gene35114:CDS
TCTTACCAAGCTCTATTTCT+TGG 0.303983 4.4:-19828737 MS.gene35114:CDS
TAGGGATTCCATATCATTAA+AGG 0.306572 4.4:+19828455 None:intergenic
ATGATGGTCCTTTAATGATA+TGG 0.309466 4.4:-19828463 MS.gene35114:CDS
GCTAAAATCGTTAATGCTAA+TGG 0.309493 4.4:-19829040 MS.gene35114:CDS
CCAGGCAATGGTAGTGTTCC+TGG 0.320965 4.4:-19828779 MS.gene35114:CDS
TCTTTCTCTTGCTAACTCTT+GGG 0.323097 4.4:-19828192 MS.gene35114:CDS
CTATGTGAATTATAGAGATT+TGG 0.331419 4.4:-19828246 MS.gene35114:CDS
TTTAACAAGAAAGGATTGTT+TGG 0.345762 4.4:-19828663 MS.gene35114:CDS
ACTTCTGGAGGTGTTGTATT+GGG 0.356109 4.4:+19828599 None:intergenic
GATTGATGGAGAAAAGAATA+TGG 0.359004 4.4:-19828342 MS.gene35114:CDS
GTGAATATGAAATCTGGTTT+TGG 0.363570 4.4:+19829430 None:intergenic
GGAGGCGGAGGAGGCAGCTT+CGG 0.369626 4.4:-19828965 MS.gene35114:CDS
ATTGAAGAGGGAAATTGGTT+TGG 0.371420 4.4:+19829532 None:intergenic
GAAACAAGCTTCTTTATAGA+TGG 0.373043 4.4:-19828856 MS.gene35114:CDS
ATTCAAGTGGGCGCAACTAT+TGG 0.377296 4.4:-19829214 MS.gene35114:CDS
TCTCTGGTGGAAGATCAAAT+TGG 0.387633 4.4:-19828936 MS.gene35114:CDS
ATTATAGAGATTTGGATATA+GGG 0.388143 4.4:-19828238 MS.gene35114:CDS
TGAATTGGGTTTAACAAGAA+AGG 0.388314 4.4:-19828672 MS.gene35114:CDS
GAATTTGAGCATGAAGTGAT+AGG 0.400466 4.4:+19829554 None:intergenic
ACACTTTCTTACTTACCAAT+TGG 0.404020 4.4:+19828068 None:intergenic
CTCATTACCGGAGGTGCTTA+CGG 0.407070 4.4:-19829109 MS.gene35114:CDS
AGGATTGTTTGGAAACTAGT+TGG 0.409589 4.4:-19828652 MS.gene35114:CDS
TACTTATCTGGATGGATTGA+TGG 0.410447 4.4:-19828356 MS.gene35114:CDS
GAAAACTCTGCTTCATAACT+TGG 0.419933 4.4:+19828696 None:intergenic
AACTTCTGGAGGTGTTGTAT+TGG 0.421717 4.4:+19828598 None:intergenic
TCAGTTCATGGCTTCCCTGC+AGG 0.425476 4.4:-19829160 MS.gene35114:CDS
GGTTCTATGATGAGAAAGTA+TGG 0.433505 4.4:-19829088 MS.gene35114:CDS
GGTATCGGTGGCCTCATTAC+CGG 0.435936 4.4:-19829121 MS.gene35114:CDS
TACCAAGCTCTATTTCTTGG+TGG 0.445176 4.4:-19828734 MS.gene35114:CDS
CCTACTCATCATTCCTCCAT+AGG 0.458631 4.4:+19828436 None:intergenic
CTTTCTCTTGCTAACTCTTG+GGG 0.458680 4.4:-19828191 MS.gene35114:CDS
CTCCTCTTATTGCCCAAAAT+AGG 0.459368 4.4:+19828984 None:intergenic
GCAGCTTCGGAGTTATTCTC+TGG 0.461190 4.4:-19828952 MS.gene35114:CDS
GCAATAAGAGGAGGCGGAGG+AGG 0.463947 4.4:-19828974 MS.gene35114:CDS
GGAAACTAGTTGGATCAAAT+CGG 0.466810 4.4:-19828642 MS.gene35114:CDS
AGGTGTTGTATTGGGATAAC+CGG 0.468626 4.4:+19828607 None:intergenic
CTTTGTACATCTTTAGGTAT+CGG 0.472738 4.4:-19829136 MS.gene35114:CDS
TCATGCCTAAAGAAATTAGA+TGG 0.473346 4.4:+19828110 None:intergenic
ACCTCCAGAAGTTCTGCTCC+AGG 0.474916 4.4:-19828588 MS.gene35114:CDS
ATATTCCACATAACACGGCT+TGG 0.479287 4.4:-19829237 MS.gene35114:CDS
AAAGATGTACAAAGGCCTGC+AGG 0.483734 4.4:+19829145 None:intergenic
TTGAAGTAAGCCTTGGATGT+AGG 0.484349 4.4:+19828560 None:intergenic
TTCTTCAATTGAAACTGAAG+TGG 0.484924 4.4:+19829591 None:intergenic
ATGAAGGCAATAGATACCTT+AGG 0.486269 4.4:+19829455 None:intergenic
CCCTGGAGCAGAACTTCTGG+AGG 0.490999 4.4:+19828587 None:intergenic
TACTTACCAATTGGAAGTGG+AGG 0.497327 4.4:+19828077 None:intergenic
CATAGAACCGTAAGCACCTC+CGG 0.501126 4.4:+19829102 None:intergenic
AAACTTCCCTCAATTCCCTA+TGG 0.503759 4.4:-19828502 MS.gene35114:CDS
AATGGTGTGAATATGAAATC+TGG 0.504260 4.4:+19829424 None:intergenic
TGAATCCAAGCCGTGTTATG+TGG 0.508263 4.4:+19829232 None:intergenic
GAACTACGAAAGTTGCTAAG+AGG 0.515266 4.4:+19829632 None:intergenic
CCAGGAACACTACCATTGCC+TGG 0.516099 4.4:+19828779 None:intergenic
AGTATCCCTCCACTTCCAAT+TGG 0.521965 4.4:-19828083 MS.gene35114:CDS
CGTAAGCACCTCCGGTAATG+AGG 0.522399 4.4:+19829110 None:intergenic
CACGTAGTTTAGCCAGGTCT+AGG 0.524645 4.4:+19829272 None:intergenic
CTCCACCAAGAAATAGAGCT+TGG 0.526513 4.4:+19828732 None:intergenic
TCTTACTTACCAATTGGAAG+TGG 0.527064 4.4:+19828074 None:intergenic
TTAATGATATGGAATCCCTA+TGG 0.528439 4.4:-19828452 MS.gene35114:CDS
ATTCTTGACAGAAAAGCAAT+GGG 0.529934 4.4:-19829013 MS.gene35114:CDS
ATATGGCAAAACATATGAGT+TGG 0.530345 4.4:-19828325 MS.gene35114:CDS
ATTGAAACTGAAGTGGAAAG+TGG 0.535886 4.4:+19829598 None:intergenic
AAATCGGTTCTTTATATCGC+CGG 0.536045 4.4:-19828626 MS.gene35114:CDS
GCTTCGGAGTTATTCTCTGG+TGG 0.536428 4.4:-19828949 MS.gene35114:CDS
TTACTGCACGTAGTTTAGCC+AGG 0.536709 4.4:+19829266 None:intergenic
CTACTCATCATTCCTCCATA+GGG 0.537440 4.4:+19828437 None:intergenic
AAATTCAGTACTTATCTGGA+TGG 0.539864 4.4:-19828364 MS.gene35114:CDS
CGTTGATATTCCACATAACA+CGG 0.539970 4.4:-19829242 MS.gene35114:CDS
TAACTTCAATAGGTTAGTAA+AGG 0.543846 4.4:-19828150 MS.gene35114:CDS
AATTCTTGACAGAAAAGCAA+TGG 0.545747 4.4:-19829014 MS.gene35114:CDS
TTGCACATATCACAGCTGCT+TGG 0.546395 4.4:+19829386 None:intergenic
ATGATGAGAAAGTATGGCCT+CGG 0.549358 4.4:-19829082 MS.gene35114:CDS
CTGCTTGGACTTGTGAGTCA+TGG 0.555171 4.4:+19829401 None:intergenic
AGTGTAAGACTTATTGGTTG+AGG 0.555975 4.4:+19829504 None:intergenic
AGCGGAGGACACGACTATGA+AGG 0.557599 4.4:-19829334 MS.gene35114:CDS
GTTGAGGTATAGATTGAAGA+GGG 0.560414 4.4:+19829520 None:intergenic
AATCCACTGCTCAAAACCTA+AGG 0.560820 4.4:-19829471 MS.gene35114:CDS
ACCGTTCATGATCCTAGACC+TGG 0.569999 4.4:-19829284 MS.gene35114:CDS
TGGGCAATAAGAGGAGGCGG+AGG 0.574351 4.4:-19828977 MS.gene35114:CDS
AACTACGAAAGTTGCTAAGA+GGG 0.580812 4.4:+19829633 None:intergenic
TGTACATCTTTAGGTATCGG+TGG 0.582234 4.4:-19829133 MS.gene35114:CDS
CCTATGGAGGAATGATGAGT+AGG 0.584439 4.4:-19828436 MS.gene35114:CDS
CAAAACATATGAGTTGGATG+AGG 0.585356 4.4:-19828319 MS.gene35114:CDS
GTCTTGATTCAACCAGGCAA+TGG 0.587697 4.4:-19828791 MS.gene35114:CDS
GCCAGGTCTAGGATCATGAA+CGG 0.594071 4.4:+19829283 None:intergenic
GTAGTTACAGTTCTTTGACC+AGG 0.595410 4.4:+19828761 None:intergenic
ATCAGAGTCTTGATTCAACC+AGG 0.596708 4.4:-19828797 MS.gene35114:CDS
ACTTACCAATTGGAAGTGGA+GGG 0.597383 4.4:+19828078 None:intergenic
TGGACTTGTGAGTCATGGAA+TGG 0.604528 4.4:+19829406 None:intergenic
AAGATGTACAAAGGCCTGCA+GGG 0.604713 4.4:+19829146 None:intergenic
CCAGGGAAAACCTACATCCA+AGG 0.606686 4.4:-19828570 MS.gene35114:CDS
CCTCCAGAAGTTCTGCTCCA+GGG 0.608247 4.4:-19828587 MS.gene35114:CDS
GGTTGAGGTATAGATTGAAG+AGG 0.611987 4.4:+19829519 None:intergenic
ATCGGTGGCCTCATTACCGG+AGG 0.636534 4.4:-19829118 MS.gene35114:CDS
AACACGGCTTGGATTCAAGT+GGG 0.646968 4.4:-19829226 MS.gene35114:CDS
ATGATATGGAATCCCTATGG+AGG 0.647237 4.4:-19828449 MS.gene35114:CDS
TAACACGGCTTGGATTCAAG+TGG 0.652527 4.4:-19829227 MS.gene35114:CDS
CATATGAGAATACGAAGCGG+AGG 0.688013 4.4:-19829349 MS.gene35114:CDS
CGATACCTAAAGATGTACAA+AGG 0.714905 4.4:+19829137 None:intergenic
ACAAAGAGTCTAGAACAAGG+TGG 0.730420 4.4:-19828878 MS.gene35114:CDS
ATTCATATGAGAATACGAAG+CGG 0.748676 4.4:-19829352 MS.gene35114:CDS
GTAACAAAGAGTCTAGAACA+AGG 0.765309 4.4:-19828881 MS.gene35114:CDS
CAACAACGTTGTCAACACCG+AGG 0.799916 4.4:+19829065 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAGAGATTTGGATAT+AGG - chr4.4:19829486-19829505 MS.gene35114:CDS 20.0%
!! ATTATAGAGATTTGGATATA+GGG - chr4.4:19829487-19829506 MS.gene35114:CDS 20.0%
!!! AAAATTTTTCTTCAAGATGA+TGG - chr4.4:19829246-19829265 MS.gene35114:CDS 20.0%
!!! AAGAGATTTTCATCAATATT+TGG + chr4.4:19828907-19828926 None:intergenic 20.0%
!!! TTGAAGAAAAATTTTCCATA+GGG + chr4.4:19829241-19829260 None:intergenic 20.0%
! CTATGTGAATTATAGAGATT+TGG - chr4.4:19829479-19829498 MS.gene35114:CDS 25.0%
! TAACTTCAATAGGTTAGTAA+AGG - chr4.4:19829575-19829594 MS.gene35114:CDS 25.0%
! TACAAAATTCAGTACTTATC+TGG - chr4.4:19829357-19829376 MS.gene35114:CDS 25.0%
! TTATGCATCAAAAAATCCAA+GGG - chr4.4:19829452-19829471 MS.gene35114:CDS 25.0%
! TTGATCCATCTAATTTCTTT+AGG - chr4.4:19829610-19829629 MS.gene35114:CDS 25.0%
! TTTAACAAGAAAGGATTGTT+TGG - chr4.4:19829062-19829081 MS.gene35114:CDS 25.0%
!! CTTGAAGAAAAATTTTCCAT+AGG + chr4.4:19829242-19829261 None:intergenic 25.0%
!!! ATTTTAAGGGTAACTTCAAT+AGG - chr4.4:19829565-19829584 MS.gene35114:CDS 25.0%
AAATTCAGTACTTATCTGGA+TGG - chr4.4:19829361-19829380 MS.gene35114:CDS 30.0%
AATGGTGTGAATATGAAATC+TGG + chr4.4:19828304-19828323 None:intergenic 30.0%
AATTCTTGACAGAAAAGCAA+TGG - chr4.4:19828711-19828730 MS.gene35114:CDS 30.0%
ATATGGCAAAACATATGAGT+TGG - chr4.4:19829400-19829419 MS.gene35114:CDS 30.0%
ATGATGGTCCTTTAATGATA+TGG - chr4.4:19829262-19829281 MS.gene35114:CDS 30.0%
ATTCATATGAGAATACGAAG+CGG - chr4.4:19828373-19828392 MS.gene35114:CDS 30.0%
ATTCTTGACAGAAAAGCAAT+GGG - chr4.4:19828712-19828731 MS.gene35114:CDS 30.0%
CTTATGCATCAAAAAATCCA+AGG - chr4.4:19829451-19829470 MS.gene35114:CDS 30.0%
CTTTGTACATCTTTAGGTAT+CGG - chr4.4:19828589-19828608 MS.gene35114:CDS 30.0%
GAAACAAGCTTCTTTATAGA+TGG - chr4.4:19828869-19828888 MS.gene35114:CDS 30.0%
GATTGAAGTGTAAGACTTAT+TGG + chr4.4:19828230-19828249 None:intergenic 30.0%
GATTGATGGAGAAAAGAATA+TGG - chr4.4:19829383-19829402 MS.gene35114:CDS 30.0%
GCTAAAATCGTTAATGCTAA+TGG - chr4.4:19828685-19828704 MS.gene35114:CDS 30.0%
GTGATATGTGCAAAAAAACA+TGG - chr4.4:19828349-19828368 MS.gene35114:CDS 30.0%
TAGGGATTCCATATCATTAA+AGG + chr4.4:19829273-19829292 None:intergenic 30.0%
TATAGATTGAAGAGGGAAAT+TGG + chr4.4:19828201-19828220 None:intergenic 30.0%
TCATGCCTAAAGAAATTAGA+TGG + chr4.4:19829618-19829637 None:intergenic 30.0%
TGAATTGGGTTTAACAAGAA+AGG - chr4.4:19829053-19829072 MS.gene35114:CDS 30.0%
TTAATGATATGGAATCCCTA+TGG - chr4.4:19829273-19829292 MS.gene35114:CDS 30.0%
TTCTTCAATTGAAACTGAAG+TGG + chr4.4:19828137-19828156 None:intergenic 30.0%
TTTCTTGTTAAACCCAATTC+AGG + chr4.4:19829054-19829073 None:intergenic 30.0%
! AAAAACTGTGACAGTTTTCA+CGG - chr4.4:19828822-19828841 MS.gene35114:CDS 30.0%
! AAATTTTCCATAGGGAATTG+AGG + chr4.4:19829233-19829252 None:intergenic 30.0%
! AATTTTCCATAGGGAATTGA+GGG + chr4.4:19829232-19829251 None:intergenic 30.0%
! TAATTCACATAGTTTTCCCT+TGG + chr4.4:19829471-19829490 None:intergenic 30.0%
! TTGGGGTTATAGGTATTTTA+AGG - chr4.4:19829551-19829570 MS.gene35114:CDS 30.0%
!! GTGAATATGAAATCTGGTTT+TGG + chr4.4:19828298-19828317 None:intergenic 30.0%
!! TGGGGTTATAGGTATTTTAA+GGG - chr4.4:19829552-19829571 MS.gene35114:CDS 30.0%
!!! CTTGGATTTTTTGATGCATA+AGG + chr4.4:19829453-19829472 None:intergenic 30.0%
AACTACGAAAGTTGCTAAGA+GGG + chr4.4:19828095-19828114 None:intergenic 35.0%
AGGATTGTTTGGAAACTAGT+TGG - chr4.4:19829073-19829092 MS.gene35114:CDS 35.0%
ATGAAGGCAATAGATACCTT+AGG + chr4.4:19828273-19828292 None:intergenic 35.0%
ATTGAAACTGAAGTGGAAAG+TGG + chr4.4:19828130-19828149 None:intergenic 35.0%
ATTGAAGAGGGAAATTGGTT+TGG + chr4.4:19828196-19828215 None:intergenic 35.0%
CGATACCTAAAGATGTACAA+AGG + chr4.4:19828591-19828610 None:intergenic 35.0%
CGTTGATATTCCACATAACA+CGG - chr4.4:19828483-19828502 MS.gene35114:CDS 35.0%
GAAAACTCTGCTTCATAACT+TGG + chr4.4:19829032-19829051 None:intergenic 35.0%
GAATTTGAGCATGAAGTGAT+AGG + chr4.4:19828174-19828193 None:intergenic 35.0%
GGAAACTAGTTGGATCAAAT+CGG - chr4.4:19829083-19829102 MS.gene35114:CDS 35.0%
GGTTCTATGATGAGAAAGTA+TGG - chr4.4:19828637-19828656 MS.gene35114:CDS 35.0%
GTTGAGGTATAGATTGAAGA+GGG + chr4.4:19828208-19828227 None:intergenic 35.0%
TCTTTCTCTTGCTAACTCTT+GGG - chr4.4:19829533-19829552 MS.gene35114:CDS 35.0%
! AAATCGGTTCTTTATATCGC+CGG - chr4.4:19829099-19829118 MS.gene35114:CDS 35.0%
! AAGCAGAGTTTTCCTGAATT+GGG - chr4.4:19829039-19829058 MS.gene35114:CDS 35.0%
! AATGGGAGAAGACCTATTTT+GGG - chr4.4:19828729-19828748 MS.gene35114:CDS 35.0%
! AGTGTAAGACTTATTGGTTG+AGG + chr4.4:19828224-19828243 None:intergenic 35.0%
! CAAAACATATGAGTTGGATG+AGG - chr4.4:19829406-19829425 MS.gene35114:CDS 35.0%
! GTAACAAAGAGTCTAGAACA+AGG - chr4.4:19828844-19828863 MS.gene35114:CDS 35.0%
! GTGAAAACTGTCACAGTTTT+TGG + chr4.4:19828823-19828842 None:intergenic 35.0%
! TAAAGAGTTCCTTTTCTGTG+AGG + chr4.4:19829339-19829358 None:intergenic 35.0%
! TCTTACCAAGCTCTATTTCT+TGG - chr4.4:19828988-19829007 MS.gene35114:CDS 35.0%
!! TACTTATCTGGATGGATTGA+TGG - chr4.4:19829369-19829388 MS.gene35114:CDS 35.0%
!!! AAATCTGGTTTTGGCAATGA+AGG + chr4.4:19828289-19828308 None:intergenic 35.0%
!!! TTTTGCTTTGAAGTAAGCCT+TGG + chr4.4:19829175-19829194 None:intergenic 35.0%
AAACTTCCCTCAATTCCCTA+TGG - chr4.4:19829223-19829242 MS.gene35114:CDS 40.0%
AATCCACTGCTCAAAACCTA+AGG - chr4.4:19828254-19828273 MS.gene35114:CDS 40.0%
ACTTACCAATTGGAAGTGGA+GGG + chr4.4:19829650-19829669 None:intergenic 40.0%
ATATTCCACATAACACGGCT+TGG - chr4.4:19828488-19828507 MS.gene35114:CDS 40.0%
ATCAGAGTCTTGATTCAACC+AGG - chr4.4:19828928-19828947 MS.gene35114:CDS 40.0%
ATGATATGGAATCCCTATGG+AGG - chr4.4:19829276-19829295 MS.gene35114:CDS 40.0%
CTACTCATCATTCCTCCATA+GGG + chr4.4:19829291-19829310 None:intergenic 40.0%
CTCCTCTTATTGCCCAAAAT+AGG + chr4.4:19828744-19828763 None:intergenic 40.0%
CTTTCTCTTGCTAACTCTTG+GGG - chr4.4:19829534-19829553 MS.gene35114:CDS 40.0%
GAACTACGAAAGTTGCTAAG+AGG + chr4.4:19828096-19828115 None:intergenic 40.0%
GGTTGAGGTATAGATTGAAG+AGG + chr4.4:19828209-19828228 None:intergenic 40.0%
GTAGTTACAGTTCTTTGACC+AGG + chr4.4:19828967-19828986 None:intergenic 40.0%
GTCTTTCTCTTGCTAACTCT+TGG - chr4.4:19829532-19829551 MS.gene35114:CDS 40.0%
TACTTACCAATTGGAAGTGG+AGG + chr4.4:19829651-19829670 None:intergenic 40.0%
TCCGCAAAAAGTTCAGTTCA+TGG - chr4.4:19828553-19828572 MS.gene35114:CDS 40.0%
TCTCTGGTGGAAGATCAAAT+TGG - chr4.4:19828789-19828808 MS.gene35114:CDS 40.0%
TTGAAGTAAGCCTTGGATGT+AGG + chr4.4:19829168-19829187 None:intergenic 40.0%
TTGCTAACTCTTGGGGTTAT+AGG - chr4.4:19829541-19829560 MS.gene35114:CDS 40.0%
! ACAAAGAGTCTAGAACAAGG+TGG - chr4.4:19828847-19828866 MS.gene35114:CDS 40.0%
! ACACCTTTTCCTCACAGAAA+AGG - chr4.4:19829327-19829346 MS.gene35114:CDS 40.0%
! AGGTGTTGTATTGGGATAAC+CGG + chr4.4:19829121-19829140 None:intergenic 40.0%
! ATGATGAGAAAGTATGGCCT+CGG - chr4.4:19828643-19828662 MS.gene35114:CDS 40.0%
! CAATGGGAGAAGACCTATTT+TGG - chr4.4:19828728-19828747 MS.gene35114:CDS 40.0%
! GAAGCAGAGTTTTCCTGAAT+TGG - chr4.4:19829038-19829057 MS.gene35114:CDS 40.0%
! GCCATGAACTGAACTTTTTG+CGG + chr4.4:19828557-19828576 None:intergenic 40.0%
! GTTCCTTTTCTGTGAGGAAA+AGG + chr4.4:19829333-19829352 None:intergenic 40.0%
! TACCAAGCTCTATTTCTTGG+TGG - chr4.4:19828991-19829010 MS.gene35114:CDS 40.0%
!! AACTTCTGGAGGTGTTGTAT+TGG + chr4.4:19829130-19829149 None:intergenic 40.0%
!! ACTTCTGGAGGTGTTGTATT+GGG + chr4.4:19829129-19829148 None:intergenic 40.0%
!! CTATTTTGGGCAATAAGAGG+AGG - chr4.4:19828742-19828761 MS.gene35114:CDS 40.0%
!! GACCTATTTTGGGCAATAAG+AGG - chr4.4:19828739-19828758 MS.gene35114:CDS 40.0%
!! TGTACATCTTTAGGTATCGG+TGG - chr4.4:19828592-19828611 MS.gene35114:CDS 40.0%
!!! ATACCTTAGGTTTTGAGCAG+TGG + chr4.4:19828260-19828279 None:intergenic 40.0%
AAAGATGTACAAAGGCCTGC+AGG + chr4.4:19828583-19828602 None:intergenic 45.0%
AAGATGTACAAAGGCCTGCA+GGG + chr4.4:19828582-19828601 None:intergenic 45.0%
AGGGAATTGAGGGAAGTTTC+TGG + chr4.4:19829222-19829241 None:intergenic 45.0%
AGTATCCCTCCACTTCCAAT+TGG - chr4.4:19829642-19829661 MS.gene35114:CDS 45.0%
ATTCAAGTGGGCGCAACTAT+TGG - chr4.4:19828511-19828530 MS.gene35114:CDS 45.0%
CATATGAGAATACGAAGCGG+AGG - chr4.4:19828376-19828395 MS.gene35114:CDS 45.0%
CCTACTCATCATTCCTCCAT+AGG + chr4.4:19829292-19829311 None:intergenic 45.0%
CCTATGGAGGAATGATGAGT+AGG - chr4.4:19829289-19829308 MS.gene35114:CDS 45.0%
CTCCACCAAGAAATAGAGCT+TGG + chr4.4:19828996-19829015 None:intergenic 45.0%
GCAGGCCTTTGTACATCTTT+AGG - chr4.4:19828583-19828602 MS.gene35114:CDS 45.0%
GTCTTGATTCAACCAGGCAA+TGG - chr4.4:19828934-19828953 MS.gene35114:CDS 45.0%
TGAATCCAAGCCGTGTTATG+TGG + chr4.4:19828496-19828515 None:intergenic 45.0%
TGGACTTGTGAGTCATGGAA+TGG + chr4.4:19828322-19828341 None:intergenic 45.0%
TTACTGCACGTAGTTTAGCC+AGG + chr4.4:19828462-19828481 None:intergenic 45.0%
TTGCACATATCACAGCTGCT+TGG + chr4.4:19828342-19828361 None:intergenic 45.0%
! AACACGGCTTGGATTCAAGT+GGG - chr4.4:19828499-19828518 MS.gene35114:CDS 45.0%
! TAACACGGCTTGGATTCAAG+TGG - chr4.4:19828498-19828517 MS.gene35114:CDS 45.0%
! TTTTGGGCAATAAGAGGAGG+CGG - chr4.4:19828745-19828764 MS.gene35114:CDS 45.0%
!!! ACTGTCACAGTTTTTGGCAC+AGG + chr4.4:19828817-19828836 None:intergenic 45.0%
!!! GGTTTTGAGCAGTGGATTCA+AGG + chr4.4:19828252-19828271 None:intergenic 45.0%
ACCGTTCATGATCCTAGACC+TGG - chr4.4:19828441-19828460 MS.gene35114:CDS 50.0%
CAACAACGTTGTCAACACCG+AGG + chr4.4:19828663-19828682 None:intergenic 50.0%
CACGTAGTTTAGCCAGGTCT+AGG + chr4.4:19828456-19828475 None:intergenic 50.0%
CATAGAACCGTAAGCACCTC+CGG + chr4.4:19828626-19828645 None:intergenic 50.0%
CCAGGGAAAACCTACATCCA+AGG - chr4.4:19829155-19829174 MS.gene35114:CDS 50.0%
CTGCTTGGACTTGTGAGTCA+TGG + chr4.4:19828327-19828346 None:intergenic 50.0%
GCAGCTTCGGAGTTATTCTC+TGG - chr4.4:19828773-19828792 MS.gene35114:CDS 50.0%
GCTTCGGAGTTATTCTCTGG+TGG - chr4.4:19828776-19828795 MS.gene35114:CDS 50.0%
TTTCCCTGGAGCAGAACTTC+TGG + chr4.4:19829144-19829163 None:intergenic 50.0%
! CCTTGGATGTAGGTTTTCCC+TGG + chr4.4:19829158-19829177 None:intergenic 50.0%
! GCCAGGTCTAGGATCATGAA+CGG + chr4.4:19828445-19828464 None:intergenic 50.0%
!! CTCATTACCGGAGGTGCTTA+CGG - chr4.4:19828616-19828635 MS.gene35114:CDS 50.0%
ACCTCCAGAAGTTCTGCTCC+AGG - chr4.4:19829137-19829156 MS.gene35114:CDS 55.0%
AGCGGAGGACACGACTATGA+AGG - chr4.4:19828391-19828410 MS.gene35114:CDS 55.0%
CCAGGAACACTACCATTGCC+TGG + chr4.4:19828949-19828968 None:intergenic 55.0%
CCTCCAGAAGTTCTGCTCCA+GGG - chr4.4:19829138-19829157 MS.gene35114:CDS 55.0%
CGTAAGCACCTCCGGTAATG+AGG + chr4.4:19828618-19828637 None:intergenic 55.0%
TCAGTTCATGGCTTCCCTGC+AGG - chr4.4:19828565-19828584 MS.gene35114:CDS 55.0%
! CCAGGCAATGGTAGTGTTCC+TGG - chr4.4:19828946-19828965 MS.gene35114:CDS 55.0%
!! GGTATCGGTGGCCTCATTAC+CGG - chr4.4:19828604-19828623 MS.gene35114:CDS 55.0%
ATCGGTGGCCTCATTACCGG+AGG - chr4.4:19828607-19828626 MS.gene35114:CDS 60.0%
CCCTGGAGCAGAACTTCTGG+AGG + chr4.4:19829141-19829160 None:intergenic 60.0%
GCAATAAGAGGAGGCGGAGG+AGG - chr4.4:19828751-19828770 MS.gene35114:CDS 60.0%
TGGGCAATAAGAGGAGGCGG+AGG - chr4.4:19828748-19828767 MS.gene35114:CDS 60.0%
GGAGGCGGAGGAGGCAGCTT+CGG - chr4.4:19828760-19828779 MS.gene35114:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 19828076 19829671 19828076 ID=MS.gene35114
chr4.4 mRNA 19828076 19829671 19828076 ID=MS.gene35114.t1;Parent=MS.gene35114
chr4.4 exon 19828076 19829671 19828076 ID=MS.gene35114.t1.exon1;Parent=MS.gene35114.t1
chr4.4 CDS 19828076 19829671 19828076 ID=cds.MS.gene35114.t1;Parent=MS.gene35114.t1
Gene Sequence

>MS.gene35114

ATGCAGTCTATGATGTCCCTCTTAGCAACTTTCGTAGTTCTGCTATCTGTTCCACTTTCCACTTCAGTTTCAATTGAAGAAATTTTCAATAATTGCCTATCACTTCATGCTCAAATTCCAAACCAATTTCCCTCTTCAATCTATACCTCAACCAATAAGTCTTACACTTCAATCCTTGAATCCACTGCTCAAAACCTAAGGTATCTATTGCCTTCATTGCCAAAACCAGATTTCATATTCACACCATTCCATGACTCACAAGTCCAAGCAGCTGTGATATGTGCAAAAAAACATGGTATTCATATGAGAATACGAAGCGGAGGACACGACTATGAAGGTCTTTCTTATGTTTCTCTTATCGAGAAACCGTTCATGATCCTAGACCTGGCTAAACTACGTGCAGTAAACGTTGATATTCCACATAACACGGCTTGGATTCAAGTGGGCGCAACTATTGGTGAAGTCTATTACAAAATTTCCGCAAAAAGTTCAGTTCATGGCTTCCCTGCAGGCCTTTGTACATCTTTAGGTATCGGTGGCCTCATTACCGGAGGTGCTTACGGTTCTATGATGAGAAAGTATGGCCTCGGTGTTGACAACGTTGTTGACGCTAAAATCGTTAATGCTAATGGAAAAATTCTTGACAGAAAAGCAATGGGAGAAGACCTATTTTGGGCAATAAGAGGAGGCGGAGGAGGCAGCTTCGGAGTTATTCTCTGGTGGAAGATCAAATTGGTTCCTGTGCCAAAAACTGTGACAGTTTTCACGGTAACAAAGAGTCTAGAACAAGGTGGAAACAAGCTTCTTTATAGATGGCAACAAGTAGCACCAAATATTGATGAAAATCTCTTCATCAGAGTCTTGATTCAACCAGGCAATGGTAGTGTTCCTGGTCAAAGAACTGTAACTACTTCTTACCAAGCTCTATTTCTTGGTGGAGCTAATAGACTTCTCCAAGTTATGAAGCAGAGTTTTCCTGAATTGGGTTTAACAAGAAAGGATTGTTTGGAAACTAGTTGGATCAAATCGGTTCTTTATATCGCCGGTTATCCCAATACAACACCTCCAGAAGTTCTGCTCCAGGGAAAACCTACATCCAAGGCTTACTTCAAAGCAAAATCAGATTTTGTAAGACAAGTGATTCCAGAAACTTCCCTCAATTCCCTATGGAAAATTTTTCTTCAAGATGATGGTCCTTTAATGATATGGAATCCCTATGGAGGAATGATGAGTAGGATTGCAGAATCTGCAACACCTTTTCCTCACAGAAAAGGAACTCTTTACAAAATTCAGTACTTATCTGGATGGATTGATGGAGAAAAGAATATGGCAAAACATATGAGTTGGATGAGGAAATTTTACTCTTATATGACTCCTTATGCATCAAAAAATCCAAGGGAAAACTATGTGAATTATAGAGATTTGGATATAGGGATGAACAAGAAGAATTGTACAAGTCTTTCTCTTGCTAACTCTTGGGGTTATAGGTATTTTAAGGGTAACTTCAATAGGTTAGTAAAGGTGAAAACTAAAGTTGATCCATCTAATTTCTTTAGGCATGAGCAAAGTATCCCTCCACTTCCAATTGGTAAGTAA

Protein sequence

>MS.gene35114.t1

MQSMMSLLATFVVLLSVPLSTSVSIEEIFNNCLSLHAQIPNQFPSSIYTSTNKSYTSILESTAQNLRYLLPSLPKPDFIFTPFHDSQVQAAVICAKKHGIHMRIRSGGHDYEGLSYVSLIEKPFMILDLAKLRAVNVDIPHNTAWIQVGATIGEVYYKISAKSSVHGFPAGLCTSLGIGGLITGGAYGSMMRKYGLGVDNVVDAKIVNANGKILDRKAMGEDLFWAIRGGGGGSFGVILWWKIKLVPVPKTVTVFTVTKSLEQGGNKLLYRWQQVAPNIDENLFIRVLIQPGNGSVPGQRTVTTSYQALFLGGANRLLQVMKQSFPELGLTRKDCLETSWIKSVLYIAGYPNTTPPEVLLQGKPTSKAYFKAKSDFVRQVIPETSLNSLWKIFLQDDGPLMIWNPYGGMMSRIAESATPFPHRKGTLYKIQYLSGWIDGEKNMAKHMSWMRKFYSYMTPYASKNPRENYVNYRDLDIGMNKKNCTSLSLANSWGYRYFKGNFNRLVKVKTKVDPSNFFRHEQSIPPLPIGK