AlfalfaGEDB | MS.gene36435

M. sativa cultivar XinJiangDaYe / MS.gene36435

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363
PFAM: PF01565.26 PF08031.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36435.t1	XP_013457288.1	96.1	540	21	0	1	540	1	540	2.40E-302	1047.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36435.t1	Q8GTB6	50.1	535	259	4	7	535	8	540	1.9e-154	547.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36435.t1	G8A1B7	96.1	540	21	0	1	540	1	540	1.7e-302	1047.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052225	MS.gene36435	0.806539	7.83E-50	-1.69E-46
MS.gene054585	MS.gene36435	0.811498	6.80E-51	-1.69E-46
MS.gene055251	MS.gene36435	0.830682	2.56E-55	-1.69E-46
MS.gene056266	MS.gene36435	-0.812923	3.32E-51	-1.69E-46
MS.gene060076	MS.gene36435	0.811339	7.36E-51	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene36421	MS.gene36435	PPI
MS.gene009481	MS.gene36435	PPI
MS.gene28726	MS.gene36435	PPI
MS.gene36437	MS.gene36435	PPI
MS.gene28717	MS.gene36435	PPI
MS.gene36435	MS.gene36444	PPI
MS.gene28723	MS.gene36435	PPI
MS.gene35114	MS.gene36435	PPI
MS.gene028352	MS.gene36435	PPI
MS.gene35102	MS.gene36435	PPI
MS.gene028354	MS.gene36435	PPI
MS.gene63532	MS.gene36435	PPI
MS.gene36435	MS.gene35103	PPI
MS.gene28742	MS.gene36435	PPI
MS.gene047977	MS.gene36435	PPI
MS.gene36445	MS.gene36435	PPI
MS.gene36435	MS.gene36437	PPI
MS.gene56278	MS.gene36435	PPI
MS.gene009479	MS.gene36435	PPI
MS.gene36435	MS.gene028346	PPI
MS.gene51646	MS.gene36435	PPI
MS.gene63535	MS.gene36435	PPI
MS.gene028369	MS.gene36435	PPI
MS.gene35083	MS.gene36435	PPI
MS.gene028353	MS.gene36435	PPI
MS.gene35103	MS.gene36435	PPI
MS.gene28725	MS.gene36435	PPI
MS.gene35106	MS.gene36435	PPI
MS.gene36439	MS.gene36435	PPI
MS.gene28727	MS.gene36435	PPI
MS.gene51643	MS.gene36435	PPI
MS.gene35104	MS.gene36435	PPI
MS.gene56279	MS.gene36435	PPI
MS.gene35105	MS.gene36435	PPI
MS.gene36438	MS.gene36435	PPI
MS.gene003357	MS.gene36435	PPI
MS.gene28724	MS.gene36435	PPI
MS.gene51644	MS.gene36435	PPI
MS.gene028347	MS.gene36435	PPI
MS.gene02146	MS.gene36435	PPI
MS.gene56282	MS.gene36435	PPI
MS.gene028357	MS.gene36435	PPI
MS.gene63533	MS.gene36435	PPI
MS.gene35113	MS.gene36435	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36435.t1	MTR_4g094478	96.111	540	21	0	1	540	1	540	0.0	1047
MS.gene36435.t1	MTR_4g094480	85.019	534	80	0	1	534	1	534	0.0	924
MS.gene36435.t1	MTR_4g094488	80.597	536	102	1	1	534	1	536	0.0	888
MS.gene36435.t1	MTR_4g094495	77.365	539	117	2	1	534	1	539	0.0	850
MS.gene36435.t1	MTR_4g094492	76.838	544	121	2	1	541	1	542	0.0	848
MS.gene36435.t1	MTR_4g094418	71.560	436	119	2	104	535	1	435	0.0	662
MS.gene36435.t1	MTR_2g031560	51.711	526	250	2	10	535	2	523	0.0	568
MS.gene36435.t1	MTR_2g031390	52.250	511	237	5	30	538	27	532	0.0	560
MS.gene36435.t1	MTR_3g009880	53.422	526	235	6	11	535	4	520	0.0	551
MS.gene36435.t1	MTR_2g031590	53.073	537	244	5	2	535	1	532	0.0	550
MS.gene36435.t1	MTR_3g009760	52.182	527	242	5	11	535	4	522	0.0	549
MS.gene36435.t1	MTR_3g009820	52.182	527	242	5	11	535	4	522	0.0	548
MS.gene36435.t1	MTR_4g094498	56.088	501	213	3	35	535	41	534	0.0	546
MS.gene36435.t1	MTR_2g031420	54.528	519	221	7	18	535	23	527	0.0	537
MS.gene36435.t1	MTR_4g094520	52.328	537	241	7	1	535	9	532	0.0	532
MS.gene36435.t1	MTR_4g094518	53.543	508	229	5	30	535	28	530	0.0	529
MS.gene36435.t1	MTR_2g031460	53.113	514	231	6	30	543	30	533	0.0	527
MS.gene36435.t1	MTR_2g031490	50.372	538	257	7	3	535	6	538	8.01e-177	509
MS.gene36435.t1	MTR_6g017205	50.095	525	252	5	11	534	10	525	1.80e-172	499
MS.gene36435.t1	MTR_4g088355	51.866	509	233	5	31	534	31	532	1.98e-172	498
MS.gene36435.t1	MTR_4g091200	49.811	530	253	5	6	534	8	525	2.03e-171	495
MS.gene36435.t1	MTR_4g091190	48.405	533	265	6	6	537	7	530	1.63e-170	493
MS.gene36435.t1	MTR_4g057990	50.093	535	252	7	1	534	1	521	6.02e-170	491
MS.gene36435.t1	MTR_4g091150	51.663	511	234	6	31	535	37	540	1.20e-169	491
MS.gene36435.t1	MTR_2g031510	50.593	506	242	5	33	535	40	540	1.84e-169	491
MS.gene36435.t1	MTR_4g094515	50.760	526	255	3	10	535	629	1150	7.58e-169	509
MS.gene36435.t1	MTR_4g094515	50.791	506	241	5	32	534	39	539	1.60e-163	495
MS.gene36435.t1	MTR_2g023590	49.359	468	230	3	68	534	4	465	1.36e-148	435
MS.gene36435.t1	MTR_4g091170	47.300	463	221	5	73	534	101	541	7.83e-147	434
MS.gene36435.t1	MTR_1g076830	40.458	524	295	8	32	545	31	547	2.14e-127	384
MS.gene36435.t1	MTR_3g009850	57.965	226	93	2	310	535	5	228	4.02e-87	269
MS.gene36435.t1	MTR_2g031600	58.130	246	101	1	1	246	1	244	4.28e-86	272
MS.gene36435.t1	MTR_2g031600	52.761	163	73	3	374	535	241	400	3.46e-50	178
MS.gene36435.t1	MTR_2g084370	46.847	111	37	2	128	238	1	89	2.62e-29	111
MS.gene36435.t1	MTR_2g084405	52.500	80	38	0	128	207	1	80	1.45e-18	81.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36435.t1	AT5G44440	50.659	531	246	7	8	533	8	527	2.91e-180	518
MS.gene36435.t1	AT4G20820	49.162	537	255	5	2	533	1	524	2.43e-179	516
MS.gene36435.t1	AT5G44440	50.659	531	246	7	8	533	78	597	7.62e-179	517
MS.gene36435.t1	AT5G44400	48.519	540	264	9	3	536	6	537	3.53e-177	510
MS.gene36435.t1	AT2G34790	47.925	530	261	8	9	534	11	529	5.11e-176	507
MS.gene36435.t1	AT5G44390	47.698	543	266	11	3	535	6	540	2.06e-172	498
MS.gene36435.t1	AT5G44410	49.813	536	247	9	4	533	8	527	2.36e-171	496
MS.gene36435.t1	AT1G30760	48.924	511	248	6	28	534	48	549	3.46e-171	496
MS.gene36435.t1	AT1G30760	48.924	511	248	6	28	534	30	531	4.06e-171	495
MS.gene36435.t1	AT5G44360	49.358	545	253	11	1	536	1	531	3.38e-170	493
MS.gene36435.t1	AT5G44360	49.358	545	253	11	1	536	17	547	6.29e-170	493
MS.gene36435.t1	AT5G44380	48.799	541	262	8	3	535	6	539	5.60e-166	482
MS.gene36435.t1	AT5G44380	48.799	541	262	8	3	535	46	579	1.04e-165	483
MS.gene36435.t1	AT1G26420	47.081	531	268	9	8	535	5	525	3.74e-162	472
MS.gene36435.t1	AT1G30730	47.358	530	266	6	6	533	5	523	5.77e-161	469
MS.gene36435.t1	AT1G30700	46.904	533	273	6	6	535	1	526	8.09e-161	468
MS.gene36435.t1	AT1G26380	47.398	538	268	10	11	543	8	535	1.76e-160	468
MS.gene36435.t1	AT1G26410	48.538	513	252	8	26	535	46	549	3.46e-160	468
MS.gene36435.t1	AT1G26400	46.869	527	268	7	8	532	5	521	4.70e-159	464
MS.gene36435.t1	AT1G30710	45.421	535	270	9	9	535	8	528	6.38e-159	464
MS.gene36435.t1	AT1G11770	45.996	537	277	7	4	535	1	529	6.90e-159	464
MS.gene36435.t1	AT4G20840	46.758	509	260	6	31	536	36	536	2.83e-158	462
MS.gene36435.t1	AT4G20860	48.767	527	241	12	22	535	19	529	7.19e-158	461
MS.gene36435.t1	AT1G26390	48.134	509	247	5	27	535	36	527	1.87e-156	457
MS.gene36435.t1	AT1G34575	45.966	533	264	10	6	533	9	522	1.23e-153	450
MS.gene36435.t1	AT4G20800	45.508	512	271	5	23	533	19	523	8.67e-152	445
MS.gene36435.t1	AT4G20830	47.244	508	255	7	32	535	38	536	3.10e-150	442
MS.gene36435.t1	AT4G20830	47.244	508	255	7	32	535	38	536	1.07e-149	441
MS.gene36435.t1	AT1G30740	45.640	539	272	10	10	539	6	532	3.94e-147	434
MS.gene36435.t1	AT1G30740	45.640	539	272	10	10	539	9	535	6.01e-147	433
MS.gene36435.t1	AT1G30720	47.117	503	257	5	33	533	29	524	1.60e-146	432
MS.gene36435.t1	AT1G01980	44.796	538	280	9	6	535	6	534	1.76e-145	430
MS.gene36435.t1	AT2G34810	43.922	510	278	5	31	535	33	539	2.33e-138	411

Find 104 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAATCGGTTCTTTACCTTTA+TGG	0.132034	4.1:-18893958	MS.gene36435:CDS
AAAATTCCCATTCCTGAAAT+TGG	0.132285	4.1:-18893850	MS.gene36435:CDS
AAATTATGGTTGTTTGAATA+TGG	0.144161	4.1:+18894724	None:intergenic
GTTATAAGCAAGCTAGTATT+TGG	0.173497	4.1:-18893513	MS.gene36435:CDS
ATTCCTTCTAATCCAATTTC+AGG	0.177038	4.1:+18893838	None:intergenic
AATCGGTTCTTTACCTTTAT+GGG	0.198752	4.1:-18893957	MS.gene36435:CDS
CACCCGGAAAACCAAGATTT+TGG	0.227676	4.1:+18894499	None:intergenic
TAGAAAACTTTATAGTTATA+TGG	0.249330	4.1:-18893623	MS.gene36435:CDS
ATGGATTTGTGAACAAATTA+TGG	0.257514	4.1:+18894710	None:intergenic
AATTATAGAGATCTTGATAT+TGG	0.259521	4.1:-18893562	MS.gene36435:CDS
CAATGGGTGAAGATTTGTTT+TGG	0.263104	4.1:-18894335	MS.gene36435:CDS
AATGAACTGAGTAATAAATT+TGG	0.287296	4.1:+18893692	None:intergenic
GGTGGTGGAGGAGCAAGTTT+TGG	0.291186	4.1:-18894303	MS.gene36435:CDS
GTTTCAAGTGGTTCGTCTTT+CGG	0.292602	4.1:+18893931	None:intergenic
GTGAGATCAAGGATGATAAA+TGG	0.304625	4.1:+18894621	None:intergenic
AAATATCACCATAGCATCTT+TGG	0.304978	4.1:+18893789	None:intergenic
ATATTTCAAGCCTTGTTTCT+TGG	0.305951	4.1:-18894069	MS.gene36435:CDS
ATTCCTGAAATTGGATTAGA+AGG	0.307063	4.1:-18893841	MS.gene36435:CDS
ATTATAGAGATCTTGATATT+GGG	0.316617	4.1:-18893561	MS.gene36435:CDS
ATTCCATTTCCACATAGATA+TGG	0.327139	4.1:-18893724	MS.gene36435:CDS
GGAACCTTGGTTCGTAAATT+CGG	0.334327	4.1:-18894426	MS.gene36435:CDS
AATTATGGTTGTTTGAATAT+GGG	0.337348	4.1:+18894725	None:intergenic
TTAAAGACTGTCACAATTGA+TGG	0.347075	4.1:+18894243	None:intergenic
GGATTCGAATCTGCAGGTTA+TGG	0.348552	4.1:+18894691	None:intergenic
ATAGTAAAATATAAGTTTAG+AGG	0.351664	4.1:+18894987	None:intergenic
TTATAAGCAAGCTAGTATTT+GGG	0.359669	4.1:-18893512	MS.gene36435:CDS
TATTGATGAGTAAGAGGAAT+TGG	0.360998	4.1:+18894830	None:intergenic
CTCTGAAGTTTGTGAGATCA+AGG	0.366703	4.1:+18894610	None:intergenic
AGGGTAAATTCAAGTATAAA+AGG	0.370990	4.1:-18894117	MS.gene36435:CDS
GTGATAATGACAAGAGGTTT+AGG	0.372360	4.1:+18894762	None:intergenic
CTTGGTGACTTTGAAACAAA+AGG	0.372572	4.1:+18893598	None:intergenic
CGTCTTTCGGAAACCCATAA+AGG	0.375701	4.1:+18893944	None:intergenic
AAATTTATTACTCAGTTCAT+TGG	0.379935	4.1:-18893690	MS.gene36435:CDS
TTTCCATATCTATGTGGAAA+TGG	0.380986	4.1:+18893721	None:intergenic
TTTGAGTATTGATGAGTAAG+AGG	0.381041	4.1:+18894824	None:intergenic
TGAATATGGGAAATCTGTTT+AGG	0.386909	4.1:+18894738	None:intergenic
CAAGAACAACTTCAAAAGAT+TGG	0.391940	4.1:-18893476	MS.gene36435:CDS
CACATCAGTGGCGGCGGCTA+TGG	0.400837	4.1:-18894447	MS.gene36435:CDS
AAATTGGATTAGAAGGAATA+TGG	0.403457	4.1:-18893834	MS.gene36435:CDS
CAAGAGAAGTTTCCTGAGCT+TGG	0.412203	4.1:-18894018	MS.gene36435:CDS
TCTAATCCAATTTCAGGAAT+GGG	0.420910	4.1:+18893844	None:intergenic
TACCTTCTCTCATGTGTTCA+AGG	0.422099	4.1:-18893399	MS.gene36435:CDS
TTCTAATCCAATTTCAGGAA+TGG	0.423335	4.1:+18893843	None:intergenic
AAGATTGTGTTGAGATGAGT+TGG	0.428995	4.1:-18893984	MS.gene36435:CDS
TCATTTCTGAAGAAGTTAAG+AGG	0.433059	4.1:+18893430	None:intergenic
GAAGTTTCCTGAGCTTGGTT+TGG	0.437875	4.1:-18894013	MS.gene36435:CDS
TTTCAAGCCTTGTTTCTTGG+AGG	0.440275	4.1:-18894066	MS.gene36435:CDS
CAAAGTCATGGCCACCGCTT+CGG	0.450183	4.1:+18894670	None:intergenic
AAGCGGTGGCCATGACTTTG+AGG	0.450822	4.1:-18894667	MS.gene36435:CDS
TGAGATCAAGGATGATAAAT+GGG	0.474438	4.1:+18894622	None:intergenic
GGTGGTGAATGTCCTACTAT+AGG	0.479825	4.1:-18894480	MS.gene36435:CDS
AGAACAGCTTGGGTTCAATC+TGG	0.484147	4.1:-18894564	MS.gene36435:CDS
TGGGCTATTAGAGGTGGTGG+AGG	0.490480	4.1:-18894315	MS.gene36435:CDS
AATTACTGTTATCTTACAAA+GGG	0.491690	4.1:-18894136	MS.gene36435:CDS
TGAGTAAGAGGAATTGGCTT+TGG	0.492341	4.1:+18894836	None:intergenic
TGTAGAAAGCAGAACAGCTT+GGG	0.494574	4.1:-18894574	MS.gene36435:CDS
CTATCCATTATGCCACCATA+AGG	0.494662	4.1:+18893763	None:intergenic
TGAGATGAGTTGGGTTGAAT+CGG	0.513533	4.1:-18893974	MS.gene36435:CDS
GTTCAATCTGGTGCAACAAT+TGG	0.515144	4.1:-18894552	MS.gene36435:CDS
TAATTGATATATGCAGCTCT+TGG	0.521563	4.1:+18893580	None:intergenic
AGATTGTGTTGAGATGAGTT+GGG	0.523370	4.1:-18893983	MS.gene36435:CDS
TCTCTAACCAAACCAAGCTC+AGG	0.524526	4.1:+18894006	None:intergenic
GACAAAGAAATCAGCAGCTA+AGG	0.525403	4.1:-18893376	None:intergenic
CTGTTGAGCAACGTTTCAAG+TGG	0.530743	4.1:+18893919	None:intergenic
CGCTTCGGATTCGAATCTGC+AGG	0.531779	4.1:+18894685	None:intergenic
AGCGGTGGCCATGACTTTGA+GGG	0.532159	4.1:-18894666	MS.gene36435:CDS
GTTTCTTGACAGAGAAGCAA+TGG	0.534469	4.1:-18894352	MS.gene36435:CDS
AAGAGGTTTAGGTGTTGTGT+TGG	0.535453	4.1:+18894773	None:intergenic
AAATGGGACTTCAGAAACAT+AGG	0.536814	4.1:+18894638	None:intergenic
TATAAATTTCCATATCTATG+TGG	0.540221	4.1:+18893715	None:intergenic
TGTCCACCAACACCTATAGT+AGG	0.545211	4.1:+18894468	None:intergenic
TGGCGGCGGCTATGGAACCT+TGG	0.554368	4.1:-18894439	MS.gene36435:CDS
GGTGGACACATCAGTGGCGG+CGG	0.558776	4.1:-18894453	MS.gene36435:CDS
TGGCCTATGTTTCATGATGA+TGG	0.560963	4.1:-18893814	MS.gene36435:CDS
GCACCATCATCATGAAACAT+AGG	0.563262	4.1:+18893811	None:intergenic
CAACAGAACACTAGCTGCAA+AGG	0.565270	4.1:-18893902	MS.gene36435:CDS
TTTCTTGACAGAGAAGCAAT+GGG	0.565816	4.1:-18894351	MS.gene36435:CDS
AAATTACTGTTATCTTACAA+AGG	0.566762	4.1:-18894137	MS.gene36435:CDS
TCCCTTGAACACATGAGAGA+AGG	0.572099	4.1:+18893397	None:intergenic
ATGTAGAAAGCAGAACAGCT+TGG	0.572213	4.1:-18894575	MS.gene36435:CDS
TTATAGAGATCTTGATATTG+GGG	0.576997	4.1:-18893560	MS.gene36435:CDS
TGCTCACATAATTGATGTGA+AGG	0.585552	4.1:-18894379	MS.gene36435:CDS
GCATCAAGAAAGTGATGAGG+TGG	0.587589	4.1:-18893668	MS.gene36435:CDS
CAACAAAGCTTATTCACAAG+TGG	0.589114	4.1:-18894194	MS.gene36435:CDS
ACATAATTGATGTGAAGGGT+AGG	0.589985	4.1:-18894374	MS.gene36435:CDS
TGTCCTACTATAGGTGTTGG+TGG	0.598722	4.1:-18894471	MS.gene36435:CDS
GAATGTCCTACTATAGGTGT+TGG	0.600015	4.1:-18894474	MS.gene36435:CDS
GTGGCCATGACTTTGAGGGT+CGG	0.601490	4.1:-18894662	MS.gene36435:CDS
ACCTTCTCTCATGTGTTCAA+GGG	0.603782	4.1:-18893398	MS.gene36435:CDS
ATTGGGGTGAATAATAACAA+TGG	0.606283	4.1:-18893544	MS.gene36435:CDS
TATAAGCAAGCTAGTATTTG+GGG	0.615112	4.1:-18893511	MS.gene36435:CDS
TGATGGTGCCAAAGATGCTA+TGG	0.619348	4.1:-18893797	MS.gene36435:CDS
CAGATTCGAATCCGAAGCGG+TGG	0.621977	4.1:-18894681	MS.gene36435:CDS
ATCTACACCTCCAAGAAACA+AGG	0.636642	4.1:+18894059	None:intergenic
AGGACCGACCCTCAAAGTCA+TGG	0.642967	4.1:+18894658	None:intergenic
GGTGTTGGTGGACACATCAG+TGG	0.646578	4.1:-18894459	MS.gene36435:CDS
GTTGGTGGACACATCAGTGG+CGG	0.651631	4.1:-18894456	MS.gene36435:CDS
AATAACTATAGAGACACTGA+AGG	0.658653	4.1:+18894895	None:intergenic
TTAGGTGTGATAATGACAAG+AGG	0.664428	4.1:+18894756	None:intergenic
AAGACCGAATTTACGAACCA+AGG	0.678437	4.1:+18894422	None:intergenic
ATAGTAGGACATTCACCACC+CGG	0.688594	4.1:+18894483	None:intergenic
GCTCACATAATTGATGTGAA+GGG	0.694549	4.1:-18894378	MS.gene36435:CDS
TTGGCATCAAGAAAGTGATG+AGG	0.701714	4.1:-18893671	MS.gene36435:CDS
CTGCAGATTCGAATCCGAAG+CGG	0.713192	4.1:-18894684	MS.gene36435:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAGTAAAATATAAGTTTAG+AGG	+	chr4.1:18893387-18893406	None:intergenic	15.0%
!!	TAGAAAACTTTATAGTTATA+TGG	-	chr4.1:18894748-18894767	MS.gene36435:CDS	15.0%
!!	AAATTACTGTTATCTTACAA+AGG	-	chr4.1:18894234-18894253	MS.gene36435:CDS	20.0%
!!	AAATTATGGTTGTTTGAATA+TGG	+	chr4.1:18893650-18893669	None:intergenic	20.0%
!!	AAATTTATTACTCAGTTCAT+TGG	-	chr4.1:18894681-18894700	MS.gene36435:CDS	20.0%
!!	AATGAACTGAGTAATAAATT+TGG	+	chr4.1:18894682-18894701	None:intergenic	20.0%
!!	AATTACTGTTATCTTACAAA+GGG	-	chr4.1:18894235-18894254	MS.gene36435:CDS	20.0%
!!	AATTATAGAGATCTTGATAT+TGG	-	chr4.1:18894809-18894828	MS.gene36435:CDS	20.0%
!!	AATTATGGTTGTTTGAATAT+GGG	+	chr4.1:18893649-18893668	None:intergenic	20.0%
!!	ATTATAGAGATCTTGATATT+GGG	-	chr4.1:18894810-18894829	MS.gene36435:CDS	20.0%
!!	TATAAATTTCCATATCTATG+TGG	+	chr4.1:18894659-18894678	None:intergenic	20.0%
!!	TGGAAAAAATGAAAATGAAT+TGG	-	chr4.1:18894723-18894742	MS.gene36435:CDS	20.0%
!	AGGGTAAATTCAAGTATAAA+AGG	-	chr4.1:18894254-18894273	MS.gene36435:CDS	25.0%
!	ATGGATTTGTGAACAAATTA+TGG	+	chr4.1:18893664-18893683	None:intergenic	25.0%
!	CTTTAATGTTCCAAAAACAT+TGG	-	chr4.1:18894145-18894164	MS.gene36435:CDS	25.0%
!	TTATAAGCAAGCTAGTATTT+GGG	-	chr4.1:18894859-18894878	MS.gene36435:CDS	25.0%
!	TTATAGAGATCTTGATATTG+GGG	-	chr4.1:18894811-18894830	MS.gene36435:CDS	25.0%
!!	AAATTGGATTAGAAGGAATA+TGG	-	chr4.1:18894537-18894556	MS.gene36435:CDS	25.0%
!!!	AACCAAGATTTTGGTTTTTT+CGG	+	chr4.1:18893866-18893885	None:intergenic	25.0%
!!!	ATGGTGATATTTTTTCCTTA+TGG	-	chr4.1:18894593-18894612	MS.gene36435:CDS	25.0%
	AAAATTCCCATTCCTGAAAT+TGG	-	chr4.1:18894521-18894540	MS.gene36435:CDS	30.0%
	AAATATCACCATAGCATCTT+TGG	+	chr4.1:18894585-18894604	None:intergenic	30.0%
	AATAACTATAGAGACACTGA+AGG	+	chr4.1:18893479-18893498	None:intergenic	30.0%
	ATTCCATTTCCACATAGATA+TGG	-	chr4.1:18894647-18894666	MS.gene36435:CDS	30.0%
	ATTCCTTCTAATCCAATTTC+AGG	+	chr4.1:18894536-18894555	None:intergenic	30.0%
	ATTGGGGTGAATAATAACAA+TGG	-	chr4.1:18894827-18894846	MS.gene36435:CDS	30.0%
	CAAGAACAACTTCAAAAGAT+TGG	-	chr4.1:18894895-18894914	MS.gene36435:CDS	30.0%
	GTTATAAGCAAGCTAGTATT+TGG	-	chr4.1:18894858-18894877	MS.gene36435:CDS	30.0%
	TAATTGATATATGCAGCTCT+TGG	+	chr4.1:18894794-18894813	None:intergenic	30.0%
	TACCGAAAAAACCAAAATCT+TGG	-	chr4.1:18893861-18893880	MS.gene36435:CDS	30.0%
	TATAAGCAAGCTAGTATTTG+GGG	-	chr4.1:18894860-18894879	MS.gene36435:CDS	30.0%
	TATTGATGAGTAAGAGGAAT+TGG	+	chr4.1:18893544-18893563	None:intergenic	30.0%
	TCTAATCCAATTTCAGGAAT+GGG	+	chr4.1:18894530-18894549	None:intergenic	30.0%
	TGAATATGGGAAATCTGTTT+AGG	+	chr4.1:18893636-18893655	None:intergenic	30.0%
	TGAGATCAAGGATGATAAAT+GGG	+	chr4.1:18893752-18893771	None:intergenic	30.0%
	TTAAAGACTGTCACAATTGA+TGG	+	chr4.1:18894131-18894150	None:intergenic	30.0%
	TTCTAATCCAATTTCAGGAA+TGG	+	chr4.1:18894531-18894550	None:intergenic	30.0%
	TTTCCATATCTATGTGGAAA+TGG	+	chr4.1:18894653-18894672	None:intergenic	30.0%
!	AATCGGTTCTTTACCTTTAT+GGG	-	chr4.1:18894414-18894433	MS.gene36435:CDS	30.0%
!	ATTCCTGAAATTGGATTAGA+AGG	-	chr4.1:18894530-18894549	MS.gene36435:CDS	30.0%
!	GCATTTTGTTCCAATGTTTT+TGG	+	chr4.1:18894158-18894177	None:intergenic	30.0%
!	TCATTTCTGAAGAAGTTAAG+AGG	+	chr4.1:18894944-18894963	None:intergenic	30.0%
!!	AAACCAAAATCTTGGTTTTC+CGG	-	chr4.1:18893869-18893888	MS.gene36435:CDS	30.0%
!!	AATGGGTGAAGATTTGTTTT+GGG	-	chr4.1:18894037-18894056	MS.gene36435:CDS	30.0%
!!	ATATTTCAAGCCTTGTTTCT+TGG	-	chr4.1:18894302-18894321	MS.gene36435:CDS	30.0%
!!	TTTGAGTATTGATGAGTAAG+AGG	+	chr4.1:18893550-18893569	None:intergenic	30.0%
!!!	GTGATATTTTTTCCTTATGG+TGG	-	chr4.1:18894596-18894615	MS.gene36435:CDS	30.0%
!!!	GTTTTGGAGTCATAATTTCA+TGG	-	chr4.1:18894084-18894103	MS.gene36435:CDS	30.0%
	AAATGGGACTTCAGAAACAT+AGG	+	chr4.1:18893736-18893755	None:intergenic	35.0%
	AAGATTGTGTTGAGATGAGT+TGG	-	chr4.1:18894387-18894406	MS.gene36435:CDS	35.0%
	ACATAATTGATGTGAAGGGT+AGG	-	chr4.1:18893997-18894016	MS.gene36435:CDS	35.0%
	AGATTGTGTTGAGATGAGTT+GGG	-	chr4.1:18894388-18894407	MS.gene36435:CDS	35.0%
	CAACAAAGCTTATTCACAAG+TGG	-	chr4.1:18894177-18894196	MS.gene36435:CDS	35.0%
	GCTCACATAATTGATGTGAA+GGG	-	chr4.1:18893993-18894012	MS.gene36435:CDS	35.0%
	GTGAGATCAAGGATGATAAA+TGG	+	chr4.1:18893753-18893772	None:intergenic	35.0%
	TGCTCACATAATTGATGTGA+AGG	-	chr4.1:18893992-18894011	MS.gene36435:CDS	35.0%
	TTTCTTGACAGAGAAGCAAT+GGG	-	chr4.1:18894020-18894039	MS.gene36435:CDS	35.0%
!	GAATCGGTTCTTTACCTTTA+TGG	-	chr4.1:18894413-18894432	MS.gene36435:CDS	35.0%
!	GTGATAATGACAAGAGGTTT+AGG	+	chr4.1:18893612-18893631	None:intergenic	35.0%
!	TTAGGTGTGATAATGACAAG+AGG	+	chr4.1:18893618-18893637	None:intergenic	35.0%
!	TTTTCCTTATGGTGGCATAA+TGG	-	chr4.1:18894604-18894623	MS.gene36435:CDS	35.0%
!!	AACCAAAATCTTGGTTTTCC+GGG	-	chr4.1:18893870-18893889	MS.gene36435:CDS	35.0%
!!	CAATGGGTGAAGATTTGTTT+TGG	-	chr4.1:18894036-18894055	MS.gene36435:CDS	35.0%
!!	CTTGGTGACTTTGAAACAAA+AGG	+	chr4.1:18894776-18894795	None:intergenic	35.0%
!!!	GATTTGTTTTGGGCTATTAG+AGG	-	chr4.1:18894047-18894066	MS.gene36435:CDS	35.0%
	AAGACCGAATTTACGAACCA+AGG	+	chr4.1:18893952-18893971	None:intergenic	40.0%
	ACCTTCTCTCATGTGTTCAA+GGG	-	chr4.1:18894973-18894992	MS.gene36435:CDS	40.0%
	ATCTACACCTCCAAGAAACA+AGG	+	chr4.1:18894315-18894334	None:intergenic	40.0%
	ATGTAGAAAGCAGAACAGCT+TGG	-	chr4.1:18893796-18893815	MS.gene36435:CDS	40.0%
	CTATCCATTATGCCACCATA+AGG	+	chr4.1:18894611-18894630	None:intergenic	40.0%
	GAATGTCCTACTATAGGTGT+TGG	-	chr4.1:18893897-18893916	MS.gene36435:CDS	40.0%
	GCACCATCATCATGAAACAT+AGG	+	chr4.1:18894563-18894582	None:intergenic	40.0%
	GTTCAATCTGGTGCAACAAT+TGG	-	chr4.1:18893819-18893838	MS.gene36435:CDS	40.0%
	GTTTCTTGACAGAGAAGCAA+TGG	-	chr4.1:18894019-18894038	MS.gene36435:CDS	40.0%
	TACCTTCTCTCATGTGTTCA+AGG	-	chr4.1:18894972-18894991	MS.gene36435:CDS	40.0%
	TGGCCTATGTTTCATGATGA+TGG	-	chr4.1:18894557-18894576	MS.gene36435:CDS	40.0%
	TGTAGAAAGCAGAACAGCTT+GGG	-	chr4.1:18893797-18893816	MS.gene36435:CDS	40.0%
	TTGGCATCAAGAAAGTGATG+AGG	-	chr4.1:18894700-18894719	MS.gene36435:CDS	40.0%
!	AAGAGGTTTAGGTGTTGTGT+TGG	+	chr4.1:18893601-18893620	None:intergenic	40.0%
!	GGAACCTTGGTTCGTAAATT+CGG	-	chr4.1:18893945-18893964	MS.gene36435:CDS	40.0%
!	GTTTCAAGTGGTTCGTCTTT+CGG	+	chr4.1:18894443-18894462	None:intergenic	40.0%
!	TGAGTAAGAGGAATTGGCTT+TGG	+	chr4.1:18893538-18893557	None:intergenic	40.0%
!!	CTCTGAAGTTTGTGAGATCA+AGG	+	chr4.1:18893764-18893783	None:intergenic	40.0%
!!	TGAGATGAGTTGGGTTGAAT+CGG	-	chr4.1:18894397-18894416	MS.gene36435:CDS	40.0%
!!	TTTCAAGCCTTGTTTCTTGG+AGG	-	chr4.1:18894305-18894324	MS.gene36435:CDS	40.0%
!!!	TTGTTTTGGGCTATTAGAGG+TGG	-	chr4.1:18894050-18894069	MS.gene36435:CDS	40.0%
	AGAACAGCTTGGGTTCAATC+TGG	-	chr4.1:18893807-18893826	MS.gene36435:CDS	45.0%
	ATAGTAGGACATTCACCACC+CGG	+	chr4.1:18893891-18893910	None:intergenic	45.0%
	CAACAGAACACTAGCTGCAA+AGG	-	chr4.1:18894469-18894488	MS.gene36435:CDS	45.0%
	CAAGAGAAGTTTCCTGAGCT+TGG	-	chr4.1:18894353-18894372	MS.gene36435:CDS	45.0%
	CGTCTTTCGGAAACCCATAA+AGG	+	chr4.1:18894430-18894449	None:intergenic	45.0%
	CTGTTGAGCAACGTTTCAAG+TGG	+	chr4.1:18894455-18894474	None:intergenic	45.0%
	GAAGTTTCCTGAGCTTGGTT+TGG	-	chr4.1:18894358-18894377	MS.gene36435:CDS	45.0%
	GCATCAAGAAAGTGATGAGG+TGG	-	chr4.1:18894703-18894722	MS.gene36435:CDS	45.0%
	GGATTCGAATCTGCAGGTTA+TGG	+	chr4.1:18893683-18893702	None:intergenic	45.0%
	GGTGGTGAATGTCCTACTAT+AGG	-	chr4.1:18893891-18893910	MS.gene36435:CDS	45.0%
	TCCCTTGAACACATGAGAGA+AGG	+	chr4.1:18894977-18894996	None:intergenic	45.0%
	TCTCTAACCAAACCAAGCTC+AGG	+	chr4.1:18894368-18894387	None:intergenic	45.0%
	TGTCCACCAACACCTATAGT+AGG	+	chr4.1:18893906-18893925	None:intergenic	45.0%
!	CACCCGGAAAACCAAGATTT+TGG	+	chr4.1:18893875-18893894	None:intergenic	45.0%
!	TGATGGTGCCAAAGATGCTA+TGG	-	chr4.1:18894574-18894593	MS.gene36435:CDS	45.0%
!	TTTTGGGCTATTAGAGGTGG+TGG	-	chr4.1:18894053-18894072	MS.gene36435:CDS	45.0%
!!	CAAAATCTTGGTTTTCCGGG+TGG	-	chr4.1:18893873-18893892	MS.gene36435:CDS	45.0%
!!	TGTCCTACTATAGGTGTTGG+TGG	-	chr4.1:18893900-18893919	MS.gene36435:CDS	45.0%
	CTGCAGATTCGAATCCGAAG+CGG	-	chr4.1:18893687-18893706	MS.gene36435:CDS	50.0%
	AAGCGGTGGCCATGACTTTG+AGG	-	chr4.1:18893704-18893723	MS.gene36435:CDS	55.0%
	AGCGGTGGCCATGACTTTGA+GGG	-	chr4.1:18893705-18893724	MS.gene36435:CDS	55.0%
	AGGACCGACCCTCAAAGTCA+TGG	+	chr4.1:18893716-18893735	None:intergenic	55.0%
	CAAAGTCATGGCCACCGCTT+CGG	+	chr4.1:18893704-18893723	None:intergenic	55.0%
	CAGATTCGAATCCGAAGCGG+TGG	-	chr4.1:18893690-18893709	MS.gene36435:CDS	55.0%
	CGCTTCGGATTCGAATCTGC+AGG	+	chr4.1:18893689-18893708	None:intergenic	55.0%
!	GTGGCCATGACTTTGAGGGT+CGG	-	chr4.1:18893709-18893728	MS.gene36435:CDS	55.0%
!	GTTGGTGGACACATCAGTGG+CGG	-	chr4.1:18893915-18893934	MS.gene36435:CDS	55.0%
!	TGGGCTATTAGAGGTGGTGG+AGG	-	chr4.1:18894056-18894075	MS.gene36435:CDS	55.0%
!!	GGTGTTGGTGGACACATCAG+TGG	-	chr4.1:18893912-18893931	MS.gene36435:CDS	55.0%
!!!	GGTGGTGGAGGAGCAAGTTT+TGG	-	chr4.1:18894068-18894087	MS.gene36435:CDS	55.0%
	CACATCAGTGGCGGCGGCTA+TGG	-	chr4.1:18893924-18893943	MS.gene36435:CDS	65.0%
	GGTGGACACATCAGTGGCGG+CGG	-	chr4.1:18893918-18893937	MS.gene36435:CDS	65.0%
	TGGCGGCGGCTATGGAACCT+TGG	-	chr4.1:18893932-18893951	MS.gene36435:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	18893378	18895015	18893378	ID=MS.gene36435
chr4.1	mRNA	18893378	18895015	18893378	ID=MS.gene36435.t1;Parent=MS.gene36435
chr4.1	exon	18893378	18895015	18893378	ID=MS.gene36435.t1.exon1;Parent=MS.gene36435.t1
chr4.1	CDS	18893378	18895015	18893378	ID=cds.MS.gene36435.t1;Parent=MS.gene36435.t1

Gene Sequence

>MS.gene36435

ATGATGCCTCTAAACTTATATTTTACTATTCTACTAATTGCTCTCTTATTTTCATATACATCTTCTGCAATTGATACTCGTACACATGAAAAAAATTTCCTTCAGTGTCTCTATAGTTATTCACATAACTCAACTTCATTCTCTGAAGTTGTGTACACCAAAGCCAATTCCTCTTACTCATCAATACTCAAATTTACAACTCAAAATCTCAGATTTGCATCCAACACAACACCTAAACCTCTTGTCATTATCACACCTAAACAGATTTCCCATATTCAAACAACCATAATTTGTTCACAAATCCATAACCTGCAGATTCGAATCCGAAGCGGTGGCCATGACTTTGAGGGTCGGTCCTATGTTTCTGAAGTCCCATTTATCATCCTTGATCTCACAAACTTCAGAGAAATTGAAGTAGATGTAGAAAGCAGAACAGCTTGGGTTCAATCTGGTGCAACAATTGGTGAACTTTACTACACAATTTACCGAAAAAACCAAAATCTTGGTTTTCCGGGTGGTGAATGTCCTACTATAGGTGTTGGTGGACACATCAGTGGCGGCGGCTATGGAACCTTGGTTCGTAAATTCGGTCTTGCAGCTGATAATATAATTGATGCTCACATAATTGATGTGAAGGGTAGGTTTCTTGACAGAGAAGCAATGGGTGAAGATTTGTTTTGGGCTATTAGAGGTGGTGGAGGAGCAAGTTTTGGAGTCATAATTTCATGGAAGATTAAACTTGTTCAAGTTCCATCAATTGTGACAGTCTTTAATGTTCCAAAAACATTGGAACAAAATGCAACAAAGCTTATTCACAAGTGGCAGTTTTTGACAAGTAGAATTGATGAAAACTTAGAAATTACTGTTATCTTACAAAGGGTAAATTCAAGTATAAAAGGTAAGTCAAAGTCAACAGTACAAGCTATATTTCAAGCCTTGTTTCTTGGAGGTGTAGATAAGCTCATACACTTGATGCAAGAGAAGTTTCCTGAGCTTGGTTTGGTTAGAGAAGATTGTGTTGAGATGAGTTGGGTTGAATCGGTTCTTTACCTTTATGGGTTTCCGAAAGACGAACCACTTGAAACGTTGCTCAACAGAACACTAGCTGCAAAGGATATTTACAAAGTAAAATCTGATTTTGTCAAAATTCCCATTCCTGAAATTGGATTAGAAGGAATATGGCCTATGTTTCATGATGATGGTGCCAAAGATGCTATGGTGATATTTTTTCCTTATGGTGGCATAATGGATAGAATTTTTGAGTCTGAAATTCCATTTCCACATAGATATGGAAATTTATACCAAATTTATTACTCAGTTCATTGGCATCAAGAAAGTGATGAGGTGGAAAAAATGAAAATGAATTGGATTAGAAAACTTTATAGTTATATGGAACCTTTTGTTTCAAAGTCACCAAGAGCTGCATATATCAATTATAGAGATCTTGATATTGGGGTGAATAATAACAATGGTTACACAAGTTATAAGCAAGCTAGTATTTGGGGTGTTAAGTACTTCAAGAACAACTTCAAAAGATTGGTAAAAGTGAAGACTAAAGTTGATCCTCTTAACTTCTTCAGAAATGAACAGAGTATACCTTCTCTCATGTGTTCAAGGGACAAAGAAATCAGCAGCTAA

Protein sequence

>MS.gene36435.t1

MMPLNLYFTILLIALLFSYTSSAIDTRTHEKNFLQCLYSYSHNSTSFSEVVYTKANSSYSSILKFTTQNLRFASNTTPKPLVIITPKQISHIQTTIICSQIHNLQIRIRSGGHDFEGRSYVSEVPFIILDLTNFREIEVDVESRTAWVQSGATIGELYYTIYRKNQNLGFPGGECPTIGVGGHISGGGYGTLVRKFGLAADNIIDAHIIDVKGRFLDREAMGEDLFWAIRGGGGASFGVIISWKIKLVQVPSIVTVFNVPKTLEQNATKLIHKWQFLTSRIDENLEITVILQRVNSSIKGKSKSTVQAIFQALFLGGVDKLIHLMQEKFPELGLVREDCVEMSWVESVLYLYGFPKDEPLETLLNRTLAAKDIYKVKSDFVKIPIPEIGLEGIWPMFHDDGAKDAMVIFFPYGGIMDRIFESEIPFPHRYGNLYQIYYSVHWHQESDEVEKMKMNWIRKLYSYMEPFVSKSPRAAYINYRDLDIGVNNNNGYTSYKQASIWGVKYFKNNFKRLVKVKTKVDPLNFFRNEQSIPSLMCSRDKEISS