AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028369

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028369.t1 MTR_4g094418 95.690 464 20 0 1 464 1 464 0.0 919
MS.gene028369.t1 MTR_4g094488 73.913 437 107 3 1 434 104 536 0.0 648
MS.gene028369.t1 MTR_4g094478 72.248 436 116 2 1 435 104 535 0.0 642
MS.gene028369.t1 MTR_4g094495 70.709 437 121 2 1 434 107 539 0.0 630
MS.gene028369.t1 MTR_4g094492 69.526 443 127 3 1 440 104 541 0.0 625
MS.gene028369.t1 MTR_4g094480 70.805 435 122 3 1 434 104 534 0.0 623
MS.gene028369.t1 MTR_3g009820 58.945 436 169 4 1 436 98 523 0.0 526
MS.gene028369.t1 MTR_3g009760 58.486 436 171 4 1 436 98 523 0.0 524
MS.gene028369.t1 MTR_3g009880 58.202 445 173 5 1 445 96 527 0.0 519
MS.gene028369.t1 MTR_2g031560 55.530 443 190 3 1 443 96 531 8.41e-180 515
MS.gene028369.t1 MTR_2g031390 55.149 437 186 5 1 435 101 529 6.64e-179 512
MS.gene028369.t1 MTR_2g031590 57.207 444 179 5 1 440 101 537 3.01e-176 505
MS.gene028369.t1 MTR_2g031460 58.296 446 175 5 1 446 104 538 2.54e-174 500
MS.gene028369.t1 MTR_4g094498 59.174 436 168 4 1 436 110 535 5.82e-172 494
MS.gene028369.t1 MTR_2g031420 57.339 436 175 5 1 436 104 528 1.41e-171 493
MS.gene028369.t1 MTR_4g094520 54.691 437 187 6 1 435 105 532 2.33e-164 474
MS.gene028369.t1 MTR_4g094518 55.378 437 185 5 1 435 102 530 2.34e-163 472
MS.gene028369.t1 MTR_2g031490 52.184 435 204 3 1 435 108 538 3.92e-156 454
MS.gene028369.t1 MTR_2g031510 51.945 437 206 3 1 437 110 542 2.39e-154 449
MS.gene028369.t1 MTR_4g094515 53.793 435 194 3 1 435 723 1150 3.57e-154 468
MS.gene028369.t1 MTR_4g094515 51.030 437 203 4 1 434 111 539 4.48e-143 439
MS.gene028369.t1 MTR_4g088355 52.847 439 195 5 1 436 105 534 3.91e-150 438
MS.gene028369.t1 MTR_4g091150 51.708 439 200 6 1 435 110 540 7.67e-149 435
MS.gene028369.t1 MTR_4g091190 51.034 435 203 4 1 434 102 527 9.36e-149 435
MS.gene028369.t1 MTR_4g091200 51.259 437 205 4 1 436 98 527 1.09e-148 434
MS.gene028369.t1 MTR_4g091170 49.078 434 197 4 1 434 132 541 3.28e-148 435
MS.gene028369.t1 MTR_4g057990 51.030 437 203 4 1 436 97 523 6.02e-147 430
MS.gene028369.t1 MTR_6g017205 51.494 435 203 4 1 434 98 525 1.79e-146 429
MS.gene028369.t1 MTR_2g023590 48.975 439 214 4 1 438 40 469 4.74e-140 410
MS.gene028369.t1 MTR_1g076830 46.136 440 225 7 1 436 105 536 2.25e-121 365
MS.gene028369.t1 MTR_3g009850 57.447 235 94 3 202 436 1 229 1.28e-90 275
MS.gene028369.t1 MTR_2g031600 70.629 143 42 0 1 143 102 244 2.07e-61 206
MS.gene028369.t1 MTR_2g031600 53.801 171 75 3 271 440 238 405 1.59e-55 190
MS.gene028369.t1 MTR_2g084370 47.748 111 36 2 25 135 1 89 3.93e-30 113
MS.gene028369.t1 MTR_2g084405 47.917 96 44 2 25 120 1 90 1.27e-19 84.3
MS.gene028369.t1 MTR_8g062280 35.354 99 34 3 334 432 4 72 6.21e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028369.t1 AT4G20820 53.899 436 185 5 1 436 108 527 1.90e-164 475
MS.gene028369.t1 AT1G30760 53.899 436 187 5 1 434 126 549 2.51e-164 475
MS.gene028369.t1 AT1G30760 53.899 436 187 5 1 434 108 531 2.69e-164 474
MS.gene028369.t1 AT5G44360 53.653 438 185 7 1 435 108 530 5.92e-163 471
MS.gene028369.t1 AT5G44360 53.653 438 185 7 1 435 124 546 6.63e-163 471
MS.gene028369.t1 AT2G34790 54.442 439 180 8 1 434 106 529 8.57e-163 471
MS.gene028369.t1 AT5G44440 52.608 441 194 5 1 437 102 531 2.29e-161 467
MS.gene028369.t1 AT5G44440 52.608 441 194 5 1 437 172 601 1.30e-160 468
MS.gene028369.t1 AT4G20860 52.294 436 196 5 1 435 105 529 8.96e-160 463
MS.gene028369.t1 AT5G44400 52.392 439 195 7 1 435 108 536 1.27e-159 462
MS.gene028369.t1 AT5G44390 51.708 439 200 7 1 435 110 540 1.50e-158 460
MS.gene028369.t1 AT5G44380 53.986 439 188 7 1 435 111 539 1.09e-154 450
MS.gene028369.t1 AT5G44380 53.986 439 188 7 1 435 151 579 2.06e-154 451
MS.gene028369.t1 AT5G44410 51.794 446 194 6 1 441 106 535 3.30e-152 444
MS.gene028369.t1 AT1G11770 52.414 435 198 6 1 435 104 529 8.40e-151 440
MS.gene028369.t1 AT1G30700 53.653 438 190 6 1 435 99 526 8.60e-151 440
MS.gene028369.t1 AT1G26420 51.945 437 196 8 1 435 101 525 9.93e-148 432
MS.gene028369.t1 AT4G20840 51.270 433 202 5 3 435 112 535 1.37e-146 429
MS.gene028369.t1 AT1G26380 52.184 435 198 6 1 435 101 525 1.33e-145 427
MS.gene028369.t1 AT1G26390 50.805 435 206 4 1 435 101 527 2.61e-145 426
MS.gene028369.t1 AT1G30710 49.545 440 203 6 1 436 105 529 8.25e-145 425
MS.gene028369.t1 AT1G26410 49.655 435 209 6 1 435 125 549 8.55e-144 423
MS.gene028369.t1 AT1G26400 50.926 432 201 6 1 432 101 521 5.40e-143 420
MS.gene028369.t1 AT1G01980 52.392 439 195 8 2 435 105 534 1.48e-142 419
MS.gene028369.t1 AT1G34575 50.229 436 199 6 1 433 102 522 3.81e-142 418
MS.gene028369.t1 AT1G30730 49.770 434 207 5 1 433 100 523 6.76e-140 412
MS.gene028369.t1 AT4G20830 50.808 433 204 5 3 435 113 536 1.80e-137 406
MS.gene028369.t1 AT4G20800 48.741 437 213 6 1 436 100 526 1.86e-137 406
MS.gene028369.t1 AT4G20830 49.673 459 208 7 3 461 113 548 5.67e-137 406
MS.gene028369.t1 AT1G30740 50.343 437 206 7 1 435 104 531 7.72e-137 404
MS.gene028369.t1 AT1G30740 50.343 437 206 7 1 435 101 528 8.27e-137 404
MS.gene028369.t1 AT1G30720 49.539 434 208 5 1 433 101 524 2.73e-135 400
MS.gene028369.t1 AT2G34810 45.330 439 232 4 1 436 107 540 1.36e-130 389

Find 105 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAACATTAGGGTCATTT+TGG 0.158436 4.2:-18183951 MS.gene028369:CDS
GTTATAAGCAAGCTAGTATT+TGG 0.173497 4.2:-18183313 MS.gene028369:CDS
AGAGAGCCTATTCCTGATAT+TGG 0.262653 4.2:-18183650 MS.gene028369:CDS
TGACAATATTCAGAGTTTCT+AGG 0.284906 4.2:-18184042 MS.gene028369:CDS
CTGAATATTGTCACAGTTGA+TGG 0.291976 4.2:+18184052 None:intergenic
ACATTTGAATCCTTGTTTCT+TGG 0.300277 4.2:-18183881 MS.gene028369:CDS
ATTCCTGATATTGGGTTAGA+AGG 0.305269 4.2:-18183641 MS.gene028369:CDS
TTGTTTCTTGGAGGTGTAGA+TGG 0.315456 4.2:-18183869 MS.gene028369:CDS
AAGCAAAACTCTTGGCTTCC+CGG 0.319839 4.2:-18184311 MS.gene028369:CDS
CAATGGGTGAGGATCTGTTT+TGG 0.324567 4.2:-18184144 MS.gene028369:CDS
TGGAATAATGGATGAGATTT+CGG 0.325191 4.2:-18183555 MS.gene028369:CDS
ATACCTTCTCTGTCTCGTTT+TGG 0.346393 4.2:-18183200 MS.gene028369:CDS
CACTCCTTATGGTGGAATAA+TGG 0.346906 4.2:-18183567 MS.gene028369:CDS
GATGCGTAAGTTTGGTCTTT+CGG 0.350217 4.2:-18184227 MS.gene028369:CDS
TTATAAGCAAGCTAGTATTT+GGG 0.359669 4.2:-18183312 MS.gene028369:CDS
AACCCTTCTAACCCAATATC+AGG 0.364075 4.2:+18183638 None:intergenic
TTGATGAGGACTTAAACATT+AGG 0.365884 4.2:-18183961 MS.gene028369:CDS
CTTATCAGTGGCGGCGGCTA+TGG 0.371457 4.2:-18184256 MS.gene028369:CDS
CAAGAATAACTTCAAAAGAT+TGG 0.374379 4.2:-18183276 MS.gene028369:CDS
CTTGGAGACTTTGAAACAAA+AGG 0.375011 4.2:+18183398 None:intergenic
GAGAGCCTATTCCTGATATT+GGG 0.380379 4.2:-18183649 MS.gene028369:CDS
GGAGGTGGAGGTGCAAGCTT+TGG 0.389215 4.2:-18184112 MS.gene028369:CDS
TTTGAATCCTTGTTTCTTGG+AGG 0.404634 4.2:-18183878 MS.gene028369:CDS
ATATTGGGTTAGAAGGGTTA+TGG 0.406546 4.2:-18183634 MS.gene028369:CDS
CATCTACTTGGACTTCTTGA+AGG 0.407407 4.2:+18184404 None:intergenic
TGATGAGGACTTAAACATTA+GGG 0.412260 4.2:-18183960 MS.gene028369:CDS
ATGAGATCAATGACAACAAA+TGG 0.413992 4.2:+18184430 None:intergenic
GTGTTGATATTCACTCCTTA+TGG 0.417599 4.2:-18183578 MS.gene028369:CDS
TCTAACCCAATATCAGGAAT+AGG 0.418514 4.2:+18183644 None:intergenic
GGATTCTTGATGCGTAAGTT+TGG 0.420162 4.2:-18184235 MS.gene028369:CDS
TTCTATTCAACAAAACTTCA+AGG 0.420531 4.2:+18183717 None:intergenic
TAATTCACATATGCAGCTCT+TGG 0.438945 4.2:+18183380 None:intergenic
AATTATAGAGATCTTGATAT+TGG 0.441086 4.2:-18183362 MS.gene028369:CDS
AAGATTGTACTGAGATGAGT+TGG 0.447941 4.2:-18183796 MS.gene028369:CDS
GTTCAAGGAGGGGCAACTGC+TGG 0.456565 4.2:-18184361 MS.gene028369:CDS
GGTTCGTGACAGAGAATCAA+TGG 0.464766 4.2:-18184161 MS.gene028369:CDS
TGCCCTACTGTAGGTGTTAG+CGG 0.465359 4.2:-18184280 MS.gene028369:CDS
AATAGCAGTGCATGGGTTCA+AGG 0.466266 4.2:-18184376 MS.gene028369:CDS
AATACATTGCCTTGTGAAGA+AGG 0.472389 4.2:-18183158 MS.gene028369:CDS
TCTCTAACCAAACCAAGCTC+TGG 0.473432 4.2:+18183818 None:intergenic
GGAGTTTCCAGAGCTTGGTT+TGG 0.476037 4.2:-18183825 MS.gene028369:CDS
TAGAAAACTTTATAGTTACA+TGG 0.480388 4.2:-18183423 MS.gene028369:CDS
TGGAAACTCCTCTTCCATCA+AGG 0.482075 4.2:+18183838 None:intergenic
GAAGAGGAGTTTCCAGAGCT+TGG 0.483846 4.2:-18183830 MS.gene028369:CDS
ATTCAGAGTTTCTAGGACAC+TGG 0.484970 4.2:-18184035 MS.gene028369:CDS
AGATGGACTTATCCCCTTGA+TGG 0.488351 4.2:-18183852 MS.gene028369:CDS
TCATCCATTATTCCACCATA+AGG 0.498834 4.2:+18183563 None:intergenic
TGGGCTATTAGAGGAGGTGG+AGG 0.498949 4.2:-18184124 MS.gene028369:CDS
TTCCTGATATTGGGTTAGAA+GGG 0.500382 4.2:-18183640 MS.gene028369:CDS
TTGGAAAGAGGAAGGTGATG+AGG 0.502301 4.2:-18183471 MS.gene028369:CDS
ACATAATTGATGTGAATGGT+AGG 0.505623 4.2:-18184183 MS.gene028369:CDS
AAAACTCTTGGCTTCCCGGC+AGG 0.513479 4.2:-18184307 MS.gene028369:CDS
ATTCCATTCCCACACAGAGC+TGG 0.515576 4.2:-18183524 MS.gene028369:CDS
TCTATTCAACAAAACTTCAA+GGG 0.517551 4.2:+18183718 None:intergenic
TTTCCAGCTCTGTGTGGGAA+TGG 0.526072 4.2:+18183521 None:intergenic
AAATGGAACTTCAGAAACAT+AGG 0.532136 4.2:+18184447 None:intergenic
CTGCCACTTGTGAATAAGCC+TGG 0.540705 4.2:+18184000 None:intergenic
GGAAACTCCTCTTCCATCAA+GGG 0.545602 4.2:+18183839 None:intergenic
GCCTCGTCTTCATAAAACAT+TGG 0.545940 4.2:+18183611 None:intergenic
CGTAGTCGTGGCCACCACTT+CGG 0.548447 4.2:+18184479 None:intergenic
ATGTAGAAAATAGCAGTGCA+TGG 0.560180 4.2:-18184384 MS.gene028369:CDS
AATTGCATCCCTTCTTCACA+AGG 0.562431 4.2:+18183149 None:intergenic
CATAATTGATGTGAATGGTA+GGG 0.562579 4.2:-18184182 MS.gene028369:CDS
TTGATATTCACTCCTTATGG+TGG 0.565905 4.2:-18183575 MS.gene028369:CDS
ATGCAATTATTAGAGTTCCC+TGG 0.575808 4.2:-18183134 MS.gene028369:CDS
GCTTTGGAGTTATCATAGCA+TGG 0.581899 4.2:-18184096 MS.gene028369:CDS
GCAGTGCATGGGTTCAAGGA+GGG 0.582300 4.2:-18184372 MS.gene028369:CDS
ACTTATCCCCTTGATGGAAG+AGG 0.583355 4.2:-18183846 MS.gene028369:CDS
AGTCCGCTAACACCTACAGT+AGG 0.585729 4.2:+18184277 None:intergenic
ACAGTAGGGCAAATACCTGC+CGG 0.587491 4.2:+18184292 None:intergenic
TTGTTGAATAGAACTCATAG+TGG 0.587672 4.2:-18183707 MS.gene028369:CDS
TGACAGAGAATCAATGGGTG+AGG 0.587800 4.2:-18184155 MS.gene028369:CDS
CTATTCAACAAAACTTCAAG+GGG 0.590722 4.2:+18183719 None:intergenic
AGCGGACTTATCAGTGGCGG+CGG 0.591156 4.2:-18184262 MS.gene028369:CDS
TGTAGAAAATAGCAGTGCAT+GGG 0.602666 4.2:-18184383 MS.gene028369:CDS
CAGTAGGGCAAATACCTGCC+GGG 0.605644 4.2:+18184293 None:intergenic
ATTGGTGTGAATAATAACAA+TGG 0.605661 4.2:-18183344 MS.gene028369:CDS
ATACATTGCCTTGTGAAGAA+GGG 0.605745 4.2:-18183157 MS.gene028369:CDS
GTTCGTGACAGAGAATCAAT+GGG 0.608043 4.2:-18184160 MS.gene028369:CDS
AGGACAGACCTTCGTAGTCG+TGG 0.610475 4.2:+18184467 None:intergenic
GCTCACATAATTGATGTGAA+TGG 0.610798 4.2:-18184187 MS.gene028369:CDS
CAGTGCATGGGTTCAAGGAG+GGG 0.614481 4.2:-18184371 MS.gene028369:CDS
CACTGGAACAAAATGCAACC+AGG 0.614754 4.2:-18184018 MS.gene028369:CDS
GCAGGTATTTGCCCTACTGT+AGG 0.615009 4.2:-18184289 MS.gene028369:CDS
TATAAGCAAGCTAGTATTTG+GGG 0.615112 4.2:-18183311 MS.gene028369:CDS
ATCTACACCTCCAAGAAACA+AGG 0.617374 4.2:+18183871 None:intergenic
ATTGAATCAGTTCTCTACCA+TGG 0.621990 4.2:-18183773 MS.gene028369:CDS
AAGAAACAAGGATTCAAATG+TGG 0.623440 4.2:+18183883 None:intergenic
GTCCGCTAACACCTACAGTA+GGG 0.627164 4.2:+18184278 None:intergenic
CAGATTCGAATCCGAAGTGG+TGG 0.628502 4.2:-18184490 MS.gene028369:CDS
CAACCAGGCTTATTCACAAG+TGG 0.642716 4.2:-18184003 MS.gene028369:CDS
AAATGTTTCCAGCTCTGTGT+GGG 0.643042 4.2:+18183516 None:intergenic
GGTGTTAGCGGACTTATCAG+TGG 0.652652 4.2:-18184268 MS.gene028369:CDS
GAATCAGTTCTCTACCATGG+TGG 0.653386 4.2:-18183770 MS.gene028369:CDS
AGTAGCAAATAAGCTTGATG+AGG 0.653614 4.2:-18183975 MS.gene028369:CDS
TTACCAAAACGAGACAGAGA+AGG 0.660634 4.2:+18183197 None:intergenic
AGCAGTGCATGGGTTCAAGG+AGG 0.665984 4.2:-18184373 MS.gene028369:CDS
GAAACTCCTCTTCCATCAAG+GGG 0.668982 4.2:+18183840 None:intergenic
ATGCAGATTCGAATCCGAAG+TGG 0.674707 4.2:-18184493 MS.gene028369:CDS
TAAATGTTTCCAGCTCTGTG+TGG 0.685122 4.2:+18183515 None:intergenic
TGAATACAAGTACTCAAACA+AGG 0.687986 4.2:-18183922 MS.gene028369:CDS
AGTGGTGGCCACGACTACGA+AGG 0.696564 4.2:-18184475 MS.gene028369:CDS
GTTAGCGGACTTATCAGTGG+CGG 0.699597 4.2:-18184265 MS.gene028369:CDS
TGAAGACGAGGCTAAATCTG+CGG 0.704785 4.2:-18183600 MS.gene028369:CDS
AATCACTTGTAAAACCACCA+TGG 0.721311 4.2:+18183756 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAGAGATCTTGATAT+TGG - chr4.2:18184246-18184265 MS.gene028369:CDS 20.0%
!! TAGAAAACTTTATAGTTACA+TGG - chr4.2:18184185-18184204 MS.gene028369:CDS 20.0%
!!! TAGAAAAAAGGTACATAAAT+TGG - chr4.2:18184160-18184179 MS.gene028369:CDS 20.0%
! ATTGGTGTGAATAATAACAA+TGG - chr4.2:18184264-18184283 MS.gene028369:CDS 25.0%
! CAAGAATAACTTCAAAAGAT+TGG - chr4.2:18184332-18184351 MS.gene028369:CDS 25.0%
! TCTATTCAACAAAACTTCAA+GGG + chr4.2:18183893-18183912 None:intergenic 25.0%
! TTATAAGCAAGCTAGTATTT+GGG - chr4.2:18184296-18184315 MS.gene028369:CDS 25.0%
! TTCTATTCAACAAAACTTCA+AGG + chr4.2:18183894-18183913 None:intergenic 25.0%
!! TCATTTCTGAAAAAGTTTAG+AGG + chr4.2:18184381-18184400 None:intergenic 25.0%
!!! AAAAAACTAAGTGCTGAATT+TGG + chr4.2:18184119-18184138 None:intergenic 25.0%
!!! AAATTCAGCACTTAGTTTTT+TGG - chr4.2:18184118-18184137 MS.gene028369:CDS 25.0%
!!! GTTTTGGTAACATAACAATA+AGG - chr4.2:18184424-18184443 MS.gene028369:CDS 25.0%
AAATGGAACTTCAGAAACAT+AGG + chr4.2:18183164-18183183 None:intergenic 30.0%
AAGAAACAAGGATTCAAATG+TGG + chr4.2:18183728-18183747 None:intergenic 30.0%
ACATAATTGATGTGAATGGT+AGG - chr4.2:18183425-18183444 MS.gene028369:CDS 30.0%
ATGAGATCAATGACAACAAA+TGG + chr4.2:18183181-18183200 None:intergenic 30.0%
CATAATTGATGTGAATGGTA+GGG - chr4.2:18183426-18183445 MS.gene028369:CDS 30.0%
CTATTCAACAAAACTTCAAG+GGG + chr4.2:18183892-18183911 None:intergenic 30.0%
GTTATAAGCAAGCTAGTATT+TGG - chr4.2:18184295-18184314 MS.gene028369:CDS 30.0%
TATAAGCAAGCTAGTATTTG+GGG - chr4.2:18184297-18184316 MS.gene028369:CDS 30.0%
TGAATACAAGTACTCAAACA+AGG - chr4.2:18183686-18183705 MS.gene028369:CDS 30.0%
TGACAATATTCAGAGTTTCT+AGG - chr4.2:18183566-18183585 MS.gene028369:CDS 30.0%
TGATGAGGACTTAAACATTA+GGG - chr4.2:18183648-18183667 MS.gene028369:CDS 30.0%
TTGATGAGGACTTAAACATT+AGG - chr4.2:18183647-18183666 MS.gene028369:CDS 30.0%
TTGTTGAATAGAACTCATAG+TGG - chr4.2:18183901-18183920 MS.gene028369:CDS 30.0%
! ACATTTGAATCCTTGTTTCT+TGG - chr4.2:18183727-18183746 MS.gene028369:CDS 30.0%
! CTTAAACATTAGGGTCATTT+TGG - chr4.2:18183657-18183676 MS.gene028369:CDS 30.0%
!! ATTTTATATGTAGAGCACCA+GGG + chr4.2:18184494-18184513 None:intergenic 30.0%
!! TATTTTATATGTAGAGCACC+AGG + chr4.2:18184495-18184514 None:intergenic 30.0%
!! TGGAATAATGGATGAGATTT+CGG - chr4.2:18184053-18184072 MS.gene028369:CDS 30.0%
!!! TGCTATTTTCTACATCTACT+TGG + chr4.2:18183219-18183238 None:intergenic 30.0%
!!! TTAGTTTTTTGGAAAGAGGA+AGG - chr4.2:18184129-18184148 MS.gene028369:CDS 30.0%
AAGATTGTACTGAGATGAGT+TGG - chr4.2:18183812-18183831 MS.gene028369:CDS 35.0%
AAGGTGATGAGGTAGAAAAA+AGG - chr4.2:18184148-18184167 MS.gene028369:CDS 35.0%
AATACATTGCCTTGTGAAGA+AGG - chr4.2:18184450-18184469 MS.gene028369:CDS 35.0%
AATCACTTGTAAAACCACCA+TGG + chr4.2:18183855-18183874 None:intergenic 35.0%
AGCCAAAAAAGCAAAACTCT+TGG - chr4.2:18183289-18183308 MS.gene028369:CDS 35.0%
AGTAGCAAATAAGCTTGATG+AGG - chr4.2:18183633-18183652 MS.gene028369:CDS 35.0%
ATACATTGCCTTGTGAAGAA+GGG - chr4.2:18184451-18184470 MS.gene028369:CDS 35.0%
ATGCAATTATTAGAGTTCCC+TGG - chr4.2:18184474-18184493 MS.gene028369:CDS 35.0%
ATGTAGAAAATAGCAGTGCA+TGG - chr4.2:18183224-18183243 MS.gene028369:CDS 35.0%
ATTGAATCAGTTCTCTACCA+TGG - chr4.2:18183835-18183854 MS.gene028369:CDS 35.0%
CTGAATATTGTCACAGTTGA+TGG + chr4.2:18183559-18183578 None:intergenic 35.0%
GCTCACATAATTGATGTGAA+TGG - chr4.2:18183421-18183440 MS.gene028369:CDS 35.0%
TAATTCACATATGCAGCTCT+TGG + chr4.2:18184231-18184250 None:intergenic 35.0%
TCATCCATTATTCCACCATA+AGG + chr4.2:18184048-18184067 None:intergenic 35.0%
TCTAACCCAATATCAGGAAT+AGG + chr4.2:18183967-18183986 None:intergenic 35.0%
TGTAGAAAATAGCAGTGCAT+GGG - chr4.2:18183225-18183244 MS.gene028369:CDS 35.0%
TTGATATTCACTCCTTATGG+TGG - chr4.2:18184033-18184052 MS.gene028369:CDS 35.0%
! ATATTGGGTTAGAAGGGTTA+TGG - chr4.2:18183974-18183993 MS.gene028369:CDS 35.0%
! ATTCCTGATATTGGGTTAGA+AGG - chr4.2:18183967-18183986 MS.gene028369:CDS 35.0%
! GTGTTGATATTCACTCCTTA+TGG - chr4.2:18184030-18184049 MS.gene028369:CDS 35.0%
! TTCCTGATATTGGGTTAGAA+GGG - chr4.2:18183968-18183987 MS.gene028369:CDS 35.0%
! TTTGAATCCTTGTTTCTTGG+AGG - chr4.2:18183730-18183749 MS.gene028369:CDS 35.0%
!! CTTGGAGACTTTGAAACAAA+AGG + chr4.2:18184213-18184232 None:intergenic 35.0%
!!! AGCCAAGAGTTTTGCTTTTT+TGG + chr4.2:18183294-18183313 None:intergenic 35.0%
!!! GCACTTAGTTTTTTGGAAAG+AGG - chr4.2:18184125-18184144 MS.gene028369:CDS 35.0%
!!! TAGTGGTGTGTTGTTTTTCA+AGG - chr4.2:18183918-18183937 MS.gene028369:CDS 35.0%
AAATGTTTCCAGCTCTGTGT+GGG + chr4.2:18184095-18184114 None:intergenic 40.0%
AACCCTTCTAACCCAATATC+AGG + chr4.2:18183973-18183992 None:intergenic 40.0%
AATTGCATCCCTTCTTCACA+AGG + chr4.2:18184462-18184481 None:intergenic 40.0%
AGAGAGCCTATTCCTGATAT+TGG - chr4.2:18183958-18183977 MS.gene028369:CDS 40.0%
ATCTACACCTCCAAGAAACA+AGG + chr4.2:18183740-18183759 None:intergenic 40.0%
CATCTACTTGGACTTCTTGA+AGG + chr4.2:18183207-18183226 None:intergenic 40.0%
GAGAGCCTATTCCTGATATT+GGG - chr4.2:18183959-18183978 MS.gene028369:CDS 40.0%
GCCTCGTCTTCATAAAACAT+TGG + chr4.2:18184000-18184019 None:intergenic 40.0%
GGATTCTTGATGCGTAAGTT+TGG - chr4.2:18183373-18183392 MS.gene028369:CDS 40.0%
GTTCGTGACAGAGAATCAAT+GGG - chr4.2:18183448-18183467 MS.gene028369:CDS 40.0%
TAAATGTTTCCAGCTCTGTG+TGG + chr4.2:18184096-18184115 None:intergenic 40.0%
TTACCAAAACGAGACAGAGA+AGG + chr4.2:18184414-18184433 None:intergenic 40.0%
! AATGGGTGAGGATCTGTTTT+GGG - chr4.2:18183465-18183484 MS.gene028369:CDS 40.0%
! ATACCTTCTCTGTCTCGTTT+TGG - chr4.2:18184408-18184427 MS.gene028369:CDS 40.0%
! CACTCCTTATGGTGGAATAA+TGG - chr4.2:18184041-18184060 MS.gene028369:CDS 40.0%
! GATGCGTAAGTTTGGTCTTT+CGG - chr4.2:18183381-18183400 MS.gene028369:CDS 40.0%
! GCCAATGTTTTATGAAGACG+AGG - chr4.2:18183996-18184015 MS.gene028369:CDS 40.0%
! TTGTTTCTTGGAGGTGTAGA+TGG - chr4.2:18183739-18183758 MS.gene028369:CDS 40.0%
!! ACATTAGGGTCATTTTGGAG+AGG - chr4.2:18183662-18183681 MS.gene028369:CDS 40.0%
!! ATTCAGAGTTTCTAGGACAC+TGG - chr4.2:18183573-18183592 MS.gene028369:CDS 40.0%
!! CATTAGGGTCATTTTGGAGA+GGG - chr4.2:18183663-18183682 MS.gene028369:CDS 40.0%
!! GATCTGTTTTGGGCTATTAG+AGG - chr4.2:18183475-18183494 MS.gene028369:CDS 40.0%
!! GCTTTGGAGTTATCATAGCA+TGG - chr4.2:18183512-18183531 MS.gene028369:CDS 40.0%
AAGCAAAACTCTTGGCTTCC+CGG - chr4.2:18183297-18183316 MS.gene028369:CDS 45.0%
AATAGCAGTGCATGGGTTCA+AGG - chr4.2:18183232-18183251 MS.gene028369:CDS 45.0%
ACTTATCCCCTTGATGGAAG+AGG - chr4.2:18183762-18183781 MS.gene028369:CDS 45.0%
ATGCAGATTCGAATCCGAAG+TGG - chr4.2:18183115-18183134 MS.gene028369:CDS 45.0%
CAACCAGGCTTATTCACAAG+TGG - chr4.2:18183605-18183624 MS.gene028369:CDS 45.0%
CACTGGAACAAAATGCAACC+AGG - chr4.2:18183590-18183609 MS.gene028369:CDS 45.0%
GAAACTCCTCTTCCATCAAG+GGG + chr4.2:18183771-18183790 None:intergenic 45.0%
GAATCAGTTCTCTACCATGG+TGG - chr4.2:18183838-18183857 MS.gene028369:CDS 45.0%
GGAAACTCCTCTTCCATCAA+GGG + chr4.2:18183772-18183791 None:intergenic 45.0%
GGTTCGTGACAGAGAATCAA+TGG - chr4.2:18183447-18183466 MS.gene028369:CDS 45.0%
TCTCTAACCAAACCAAGCTC+TGG + chr4.2:18183793-18183812 None:intergenic 45.0%
TGAAGACGAGGCTAAATCTG+CGG - chr4.2:18184008-18184027 MS.gene028369:CDS 45.0%
TGACAGAGAATCAATGGGTG+AGG - chr4.2:18183453-18183472 MS.gene028369:CDS 45.0%
TGGAAACTCCTCTTCCATCA+AGG + chr4.2:18183773-18183792 None:intergenic 45.0%
TTGGAAAGAGGAAGGTGATG+AGG - chr4.2:18184137-18184156 MS.gene028369:CDS 45.0%
! AGATGGACTTATCCCCTTGA+TGG - chr4.2:18183756-18183775 MS.gene028369:CDS 45.0%
! CAATGGGTGAGGATCTGTTT+TGG - chr4.2:18183464-18183483 MS.gene028369:CDS 45.0%
! TTTTGGGCTATTAGAGGAGG+TGG - chr4.2:18183481-18183500 MS.gene028369:CDS 45.0%
!! CTGTTTTGGGCTATTAGAGG+AGG - chr4.2:18183478-18183497 MS.gene028369:CDS 45.0%
ACAGTAGGGCAAATACCTGC+CGG + chr4.2:18183319-18183338 None:intergenic 50.0%
AGTCCGCTAACACCTACAGT+AGG + chr4.2:18183334-18183353 None:intergenic 50.0%
ATTCCATTCCCACACAGAGC+TGG - chr4.2:18184084-18184103 MS.gene028369:CDS 50.0%
CAGATTCGAATCCGAAGTGG+TGG - chr4.2:18183118-18183137 MS.gene028369:CDS 50.0%
GAAGAGGAGTTTCCAGAGCT+TGG - chr4.2:18183778-18183797 MS.gene028369:CDS 50.0%
GCAGGTATTTGCCCTACTGT+AGG - chr4.2:18183319-18183338 MS.gene028369:CDS 50.0%
GGAGTTTCCAGAGCTTGGTT+TGG - chr4.2:18183783-18183802 MS.gene028369:CDS 50.0%
GTCCGCTAACACCTACAGTA+GGG + chr4.2:18183333-18183352 None:intergenic 50.0%
TGCCCTACTGTAGGTGTTAG+CGG - chr4.2:18183328-18183347 MS.gene028369:CDS 50.0%
TTTCCAGCTCTGTGTGGGAA+TGG + chr4.2:18184090-18184109 None:intergenic 50.0%
! CTGCCACTTGTGAATAAGCC+TGG + chr4.2:18183611-18183630 None:intergenic 50.0%
!! GGTGTTAGCGGACTTATCAG+TGG - chr4.2:18183340-18183359 MS.gene028369:CDS 50.0%
!! GTTAGCGGACTTATCAGTGG+CGG - chr4.2:18183343-18183362 MS.gene028369:CDS 50.0%
AAAACTCTTGGCTTCCCGGC+AGG - chr4.2:18183301-18183320 MS.gene028369:CDS 55.0%
AGCAGTGCATGGGTTCAAGG+AGG - chr4.2:18183235-18183254 MS.gene028369:CDS 55.0%
AGGACAGACCTTCGTAGTCG+TGG + chr4.2:18183144-18183163 None:intergenic 55.0%
CAGTAGGGCAAATACCTGCC+GGG + chr4.2:18183318-18183337 None:intergenic 55.0%
CAGTGCATGGGTTCAAGGAG+GGG - chr4.2:18183237-18183256 MS.gene028369:CDS 55.0%
GCAGTGCATGGGTTCAAGGA+GGG - chr4.2:18183236-18183255 MS.gene028369:CDS 55.0%
TGGGCTATTAGAGGAGGTGG+AGG - chr4.2:18183484-18183503 MS.gene028369:CDS 55.0%
AGTGGTGGCCACGACTACGA+AGG - chr4.2:18183133-18183152 MS.gene028369:CDS 60.0%
CGTAGTCGTGGCCACCACTT+CGG + chr4.2:18183132-18183151 None:intergenic 60.0%
CTTATCAGTGGCGGCGGCTA+TGG - chr4.2:18183352-18183371 MS.gene028369:CDS 60.0%
GTTCAAGGAGGGGCAACTGC+TGG - chr4.2:18183247-18183266 MS.gene028369:CDS 60.0%
! AGCGGACTTATCAGTGGCGG+CGG - chr4.2:18183346-18183365 MS.gene028369:CDS 60.0%
! GGAGGTGGAGGTGCAAGCTT+TGG - chr4.2:18183496-18183515 MS.gene028369:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 18183115 18184515 18183115 ID=MS.gene028369
chr4.2 mRNA 18183115 18184515 18183115 ID=MS.gene028369.t1;Parent=MS.gene028369
chr4.2 exon 18183115 18184515 18183115 ID=MS.gene028369.t1.exon1;Parent=MS.gene028369.t1
chr4.2 CDS 18183115 18184515 18183115 ID=cds.MS.gene028369.t1;Parent=MS.gene028369.t1
Gene Sequence

>MS.gene028369

ATGCAGATTCGAATCCGAAGTGGTGGCCACGACTACGAAGGTCTGTCCTATGTTTCTGAAGTTCCATTTGTTGTCATTGATCTCATAAACCTTCAAGAAGTCCAAGTAGATGTAGAAAATAGCAGTGCATGGGTTCAAGGAGGGGCAACTGCTGGCGAACTTTTGTACAAAATTAGCCAAAAAAGCAAAACTCTTGGCTTCCCGGCAGGTATTTGCCCTACTGTAGGTGTTAGCGGACTTATCAGTGGCGGCGGCTATGGATTCTTGATGCGTAAGTTTGGTCTTTCGGCTGATAATATACTTGACGCTCACATAATTGATGTGAATGGTAGGGTTCGTGACAGAGAATCAATGGGTGAGGATCTGTTTTGGGCTATTAGAGGAGGTGGAGGTGCAAGCTTTGGAGTTATCATAGCATGGAAGATAAAACTAGTTCGTGTTCCATCAACTGTGACAATATTCAGAGTTTCTAGGACACTGGAACAAAATGCAACCAGGCTTATTCACAAGTGGCAGTTAGTAGCAAATAAGCTTGATGAGGACTTAAACATTAGGGTCATTTTGGAGAGGGTGAATACAAGTACTCAAACAAGGAAACTAACAATAAAAGCCACATTTGAATCCTTGTTTCTTGGAGGTGTAGATGGACTTATCCCCTTGATGGAAGAGGAGTTTCCAGAGCTTGGTTTGGTTAGAGAAGATTGTACTGAGATGAGTTGGATTGAATCAGTTCTCTACCATGGTGGTTTTACAAGTGATTTTACAAGTGATCAACCCCTTGAAGTTTTGTTGAATAGAACTCATAGTGGTGTGTTGTTTTTCAAGGCAAAATCTGATTATGTGAGAGAGCCTATTCCTGATATTGGGTTAGAAGGGTTATGGCCAATGTTTTATGAAGACGAGGCTAAATCTGCGGTGTTGATATTCACTCCTTATGGTGGAATAATGGATGAGATTTCGGAGTCTGAAATTCCATTCCCACACAGAGCTGGAAACATTTACCAAATTCAGCACTTAGTTTTTTGGAAAGAGGAAGGTGATGAGGTAGAAAAAAGGTACATAAATTGGATTAGAAAACTTTATAGTTACATGGAACCTTTTGTTTCAAAGTCTCCAAGAGCTGCATATGTGAATTATAGAGATCTTGATATTGGTGTGAATAATAACAATGGATACACAAGTTATAAGCAAGCTAGTATTTGGGGTGTTAAGTACTTCAAGAATAACTTCAAAAGATTGGCAAAAGTGAAGACAAAAGTTGATCCTCTAAACTTTTTCAGAAATGAACAGAGTATACCTTCTCTGTCTCGTTTTGGTAACATAACAATAAGGCATAATACATTGCCTTGTGAAGAAGGGATGCAATTATTAGAGTTCCCTGGTGCTCTACATATAAAATAA
Protein sequence

>MS.gene028369.t1

MQIRIRSGGHDYEGLSYVSEVPFVVIDLINLQEVQVDVENSSAWVQGGATAGELLYKISQKSKTLGFPAGICPTVGVSGLISGGGYGFLMRKFGLSADNILDAHIIDVNGRVRDRESMGEDLFWAIRGGGGASFGVIIAWKIKLVRVPSTVTIFRVSRTLEQNATRLIHKWQLVANKLDEDLNIRVILERVNTSTQTRKLTIKATFESLFLGGVDGLIPLMEEEFPELGLVREDCTEMSWIESVLYHGGFTSDFTSDQPLEVLLNRTHSGVLFFKAKSDYVREPIPDIGLEGLWPMFYEDEAKSAVLIFTPYGGIMDEISESEIPFPHRAGNIYQIQHLVFWKEEGDEVEKRYINWIRKLYSYMEPFVSKSPRAAYVNYRDLDIGVNNNNGYTSYKQASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSLSRFGNITIRHNTLPCEEGMQLLEFPGALHIK