AlfalfaGEDB | MS.gene35106

M. sativa cultivar XinJiangDaYe / MS.gene35106

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363
PFAM: PF01565.26 PF08031.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35106.t1	XP_013457292.1	94.5	545	28	1	1	543	2	546	3.10E-302	1047

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35106.t1	Q9FI21	50.4	536	249	6	6	535	3	527	1.0e-152	541.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35106.t1	A0A072UQJ9	94.5	545	28	1	1	543	2	546	2.2e-302	1047.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04925	MS.gene35106	0.806887	6.61E-50	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene28726	MS.gene35106	PPI
MS.gene028369	MS.gene35106	PPI
MS.gene35083	MS.gene35106	PPI
MS.gene028352	MS.gene35106	PPI
MS.gene35102	MS.gene35106	PPI
MS.gene35106	MS.gene35102	PPI
MS.gene35106	MS.gene28742	PPI
MS.gene36445	MS.gene35106	PPI
MS.gene36439	MS.gene35106	PPI
MS.gene35106	MS.gene028353	PPI
MS.gene35106	MS.gene56282	PPI
MS.gene35106	MS.gene51643	PPI
MS.gene009479	MS.gene35106	PPI
MS.gene35106	MS.gene047977	PPI
MS.gene35104	MS.gene35106	PPI
MS.gene35106	MS.gene36444	PPI
MS.gene36438	MS.gene35106	PPI
MS.gene28724	MS.gene35106	PPI
MS.gene51644	MS.gene35106	PPI
MS.gene35106	MS.gene56279	PPI
MS.gene028347	MS.gene35106	PPI
MS.gene02146	MS.gene35106	PPI
MS.gene28727	MS.gene35106	PPI
MS.gene35106	MS.gene51646	PPI
MS.gene35106	MS.gene36435	PPI
MS.gene35106	MS.gene028354	PPI
MS.gene35105	MS.gene35106	PPI
MS.gene63533	MS.gene35106	PPI
MS.gene003357	MS.gene35106	PPI
MS.gene35106	MS.gene35103	PPI
MS.gene35106	MS.gene36437	PPI
MS.gene36421	MS.gene35106	PPI
MS.gene35106	MS.gene028357	PPI
MS.gene009481	MS.gene35106	PPI
MS.gene35106	MS.gene56278	PPI
MS.gene35106	MS.gene028346	PPI
MS.gene35106	MS.gene63535	PPI
MS.gene28717	MS.gene35106	PPI
MS.gene28723	MS.gene35106	PPI
MS.gene35114	MS.gene35106	PPI
MS.gene63532	MS.gene35106	PPI
MS.gene35106	MS.gene28725	PPI
MS.gene35113	MS.gene35106	PPI
MS.gene28742	MS.gene35106	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35106.t1	MTR_4g094495	94.495	545	28	1	1	543	2	546	0.0	1037
MS.gene35106.t1	MTR_4g094488	81.952	543	97	1	1	543	2	543	0.0	905
MS.gene35106.t1	MTR_4g094492	80.586	546	98	4	1	543	2	542	0.0	875
MS.gene35106.t1	MTR_4g094478	78.358	536	113	2	1	536	2	534	0.0	857
MS.gene35106.t1	MTR_4g094480	78.269	543	115	2	1	543	2	541	0.0	854
MS.gene35106.t1	MTR_4g094418	70.481	437	122	2	104	536	1	434	0.0	652
MS.gene35106.t1	MTR_2g031560	53.774	530	233	5	7	535	3	521	0.0	581
MS.gene35106.t1	MTR_2g031390	52.336	535	239	7	4	535	6	527	0.0	568
MS.gene35106.t1	MTR_3g009880	55.703	526	221	6	11	535	4	518	0.0	563
MS.gene35106.t1	MTR_3g009760	54.034	533	229	6	5	535	2	520	0.0	561
MS.gene35106.t1	MTR_2g031590	52.444	532	248	4	7	536	3	531	0.0	558
MS.gene35106.t1	MTR_3g009820	53.659	533	231	6	5	535	2	520	0.0	557
MS.gene35106.t1	MTR_2g031420	54.784	533	228	7	5	535	4	525	0.0	549
MS.gene35106.t1	MTR_2g031460	56.634	505	209	5	30	534	30	524	0.0	549
MS.gene35106.t1	MTR_4g094498	55.138	506	218	3	35	540	41	537	0.0	544
MS.gene35106.t1	MTR_4g094518	53.937	508	223	6	31	535	29	528	0.0	524
MS.gene35106.t1	MTR_4g094520	50.758	528	250	6	11	536	12	531	0.0	521
MS.gene35106.t1	MTR_4g057990	50.185	540	248	8	1	537	1	522	8.87e-175	504
MS.gene35106.t1	MTR_2g031490	49.343	533	260	5	6	535	11	536	1.53e-174	504
MS.gene35106.t1	MTR_4g091150	50.649	539	249	6	7	535	7	538	1.65e-174	504
MS.gene35106.t1	MTR_6g017205	50.566	530	248	6	11	538	10	527	1.94e-174	503
MS.gene35106.t1	MTR_4g091200	49.625	534	251	6	6	537	9	526	9.57e-174	501
MS.gene35106.t1	MTR_4g094515	51.306	536	254	4	6	540	624	1153	1.08e-172	519
MS.gene35106.t1	MTR_4g094515	51.670	509	236	5	32	537	39	540	3.11e-167	504
MS.gene35106.t1	MTR_4g091190	48.776	531	262	4	11	540	10	531	1.53e-172	498
MS.gene35106.t1	MTR_4g088355	51.068	515	236	7	32	540	32	536	1.13e-171	496
MS.gene35106.t1	MTR_2g031510	50.988	506	238	5	33	535	40	538	3.77e-171	495
MS.gene35106.t1	MTR_4g091170	48.408	471	218	5	73	542	101	547	2.10e-155	456
MS.gene35106.t1	MTR_2g023590	49.149	470	230	3	68	536	4	465	1.56e-151	442
MS.gene35106.t1	MTR_1g076830	44.813	482	255	5	57	534	58	532	8.23e-130	390
MS.gene35106.t1	MTR_2g031600	59.091	242	98	1	6	246	3	244	4.79e-89	280
MS.gene35106.t1	MTR_2g031600	53.165	158	71	2	379	536	245	399	5.51e-52	182
MS.gene35106.t1	MTR_3g009850	60.889	225	84	3	312	535	5	226	3.20e-86	266
MS.gene35106.t1	MTR_2g084370	51.351	111	32	2	128	238	1	89	3.67e-32	119
MS.gene35106.t1	MTR_2g084405	58.750	80	33	0	128	207	1	80	1.96e-22	92.8
MS.gene35106.t1	MTR_8g062280	34.951	103	37	3	436	538	4	76	2.89e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35106.t1	AT5G44440	51.201	541	244	8	1	535	1	527	0.0	525
MS.gene35106.t1	AT5G44440	51.201	541	244	8	1	535	71	597	0.0	525
MS.gene35106.t1	AT5G44400	50.469	533	247	9	10	535	12	534	9.07e-179	514
MS.gene35106.t1	AT4G20820	49.074	540	254	7	1	535	1	524	6.09e-177	509
MS.gene35106.t1	AT5G44390	48.162	544	263	10	2	536	6	539	2.96e-175	506
MS.gene35106.t1	AT2G34790	48.134	536	255	9	7	538	15	531	5.33e-175	504
MS.gene35106.t1	AT5G44410	50.278	539	241	10	4	535	9	527	2.89e-171	495
MS.gene35106.t1	AT1G30760	49.805	514	239	8	31	538	33	533	8.20e-171	494
MS.gene35106.t1	AT1G30760	49.805	514	239	8	31	538	51	551	1.46e-170	494
MS.gene35106.t1	AT5G44360	51.953	512	225	11	31	535	31	528	6.27e-169	489
MS.gene35106.t1	AT5G44360	52.148	512	224	11	31	535	47	544	1.08e-168	489
MS.gene35106.t1	AT1G26420	47.940	534	258	11	7	535	5	523	4.76e-165	479
MS.gene35106.t1	AT1G30700	49.341	531	256	7	8	535	4	524	2.77e-164	477
MS.gene35106.t1	AT1G34575	47.048	542	267	8	3	540	2	527	6.60e-164	476
MS.gene35106.t1	AT1G30730	47.826	529	265	6	9	535	4	523	7.85e-164	476
MS.gene35106.t1	AT1G26380	48.155	542	255	10	10	543	8	531	1.55e-162	473
MS.gene35106.t1	AT1G26410	50.198	504	241	8	33	535	53	547	4.01e-162	473
MS.gene35106.t1	AT1G30710	47.015	536	257	9	7	535	11	526	4.53e-162	472
MS.gene35106.t1	AT5G44380	48.603	537	259	9	7	535	10	537	7.42e-162	471
MS.gene35106.t1	AT4G20860	50.095	527	233	13	21	535	19	527	7.80e-162	471
MS.gene35106.t1	AT5G44380	48.603	537	259	9	7	535	50	577	2.62e-161	471
MS.gene35106.t1	AT1G11770	47.575	536	262	8	10	536	3	528	1.16e-159	466
MS.gene35106.t1	AT1G26400	46.618	547	256	12	5	538	3	526	6.49e-158	461
MS.gene35106.t1	AT1G26390	49.109	505	249	5	32	535	28	525	1.18e-157	460
MS.gene35106.t1	AT4G20840	47.368	513	257	7	32	541	37	539	5.29e-157	459
MS.gene35106.t1	AT1G30720	49.307	505	245	6	33	535	29	524	1.23e-155	455
MS.gene35106.t1	AT4G20800	47.921	505	253	5	32	535	28	523	1.94e-153	449
MS.gene35106.t1	AT1G01980	47.969	517	251	8	32	540	31	537	1.16e-149	440
MS.gene35106.t1	AT4G20830	47.471	514	257	7	31	541	37	540	1.67e-148	437
MS.gene35106.t1	AT4G20830	47.544	509	254	7	31	536	37	535	2.26e-147	436
MS.gene35106.t1	AT2G34810	45.472	508	269	4	32	535	34	537	3.06e-143	424
MS.gene35106.t1	AT1G30740	46.845	523	259	9	20	536	21	530	4.78e-143	423
MS.gene35106.t1	AT1G30740	46.845	523	259	9	20	536	18	527	5.57e-143	423

Find 102 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGGTTGCTTGAATA+TGG	0.180289	4.4:+19884385	None:intergenic
ATGCCTTCTAATCCAGTTTC+AGG	0.203252	4.4:+19883493	None:intergenic
TTATTTCAAGCTTTGTTTCT+TGG	0.234973	4.4:-19883724	MS.gene35106:CDS
CCATATCATCATTGCATCTT+TGG	0.239092	4.4:+19883444	None:intergenic
AAGACCATATTTACGCATTA+AGG	0.240019	4.4:+19884083	None:intergenic
TAGAAAACTTTATAGTTATA+TGG	0.249330	4.4:-19883278	MS.gene35106:CDS
AATTATAGAGACCTTGATAT+TGG	0.257911	4.4:-19883217	MS.gene35106:CDS
TCTAATCCAGTTTCAGGAAT+TGG	0.286688	4.4:+19883499	None:intergenic
AGAATTCCAATTCCTGAAAC+TGG	0.301096	4.4:-19883505	MS.gene35106:CDS
ATTATAGAGACCTTGATATT+GGG	0.303431	4.4:-19883216	MS.gene35106:CDS
GCTACAAGCAAGCTAGTATC+TGG	0.310882	4.4:-19883168	MS.gene35106:CDS
CACTTCAGTGGTGGTGGATA+TGG	0.317127	4.4:-19884108	MS.gene35106:CDS
GAACCATCTTCATCAAATAA+AGG	0.318041	4.4:+19883466	None:intergenic
GGTGGTGGAGGAGCTAGTTT+TGG	0.318628	4.4:-19883964	MS.gene35106:CDS
GTGATAATTACAAGGGGTTT+AGG	0.325114	4.4:+19884423	None:intergenic
CCAAAGATGCAATGATGATA+TGG	0.328286	4.4:-19883444	MS.gene35106:CDS
TATCTGTAGGCCGTGGTATT+GGG	0.342748	4.4:+19884359	None:intergenic
ACAGTAGGACAAACACTTGC+AGG	0.361034	4.4:+19884144	None:intergenic
TATTGATGTGTAAGAGGAAT+TGG	0.365680	4.4:+19884491	None:intergenic
ACTTCAGGCGGAGAACCTTT+TGG	0.366395	4.4:+19883586	None:intergenic
TGATTCAATACTCGGTTCAT+TGG	0.373369	4.4:-19883345	MS.gene35106:CDS
ATTCCTGAAACTGGATTAGA+AGG	0.376708	4.4:-19883496	MS.gene35106:CDS
GGAACCTTAATGCGTAAATA+TGG	0.378375	4.4:-19884087	MS.gene35106:CDS
CAAGAACAACTTCAAAAGAT+TGG	0.382060	4.4:-19883131	MS.gene35106:CDS
GTGGTATTGGGAACAAAATA+TGG	0.390596	4.4:+19884371	None:intergenic
TTTCCACTTCTATGAGGAAA+TGG	0.391171	4.4:+19883376	None:intergenic
GTATCTGTAGGCCGTGGTAT+TGG	0.391847	4.4:+19884358	None:intergenic
GTGAGCATCGATGACGTTAT+CGG	0.393971	4.4:+19884056	None:intergenic
TCATTTACCTCTTCAGCAAT+TGG	0.403207	4.4:-19884606	MS.gene35106:CDS
AAGCGGCGGCCACGACTTTG+AGG	0.408872	4.4:-19884328	MS.gene35106:CDS
ATGAGATCAATGACAACAAA+TGG	0.413992	4.4:+19884282	None:intergenic
ATATAGAGATGAATATTGTT+TGG	0.424409	4.4:-19883804	MS.gene35106:CDS
CAAGAGAAGTTTCCTGAGCT+TGG	0.427109	4.4:-19883673	MS.gene35106:CDS
GATGAATATTGTTTGGCAAA+GGG	0.436036	4.4:-19883797	MS.gene35106:CDS
GAAGTTTCCTGAGCTTGGTT+TGG	0.437875	4.4:-19883668	MS.gene35106:CDS
CTTATTCATGATTCAATACT+CGG	0.438411	4.4:-19883353	MS.gene35106:CDS
AAAACTCTATTTGCGTCCCT+TGG	0.438567	4.4:+19883039	None:intergenic
AATATTGTATTGAAATGAGT+TGG	0.439258	4.4:-19883639	MS.gene35106:CDS
TGGCCTTTATTTGATGAAGA+TGG	0.441205	4.4:-19883469	MS.gene35106:CDS
AAATATGGTTGCTTGAATAT+GGG	0.452572	4.4:+19884386	None:intergenic
CTTGGTGACTTCGAAACAAA+AGG	0.457842	4.4:+19883253	None:intergenic
TTGGAGTATTGATGTGTAAG+AGG	0.458954	4.4:+19884485	None:intergenic
GCTTGAAATAAAACTAGTAC+TGG	0.469012	4.4:+19883736	None:intergenic
GTTCTGTTAAGCAACACTTC+AGG	0.476097	4.4:+19883571	None:intergenic
AAAGTTTAGAGGATCAACTT+TGG	0.482938	4.4:+19883096	None:intergenic
AAAACTGCATGGGTTCAATC+TGG	0.487082	4.4:-19884225	MS.gene35106:CDS
TGGGCTATTAGAGGTGGTGG+AGG	0.490480	4.4:-19883976	MS.gene35106:CDS
CTAGAGGTGTGATAATTACA+AGG	0.491996	4.4:+19884415	None:intergenic
ATTCCATTTCCTCATAGAAG+TGG	0.498515	4.4:-19883379	MS.gene35106:CDS
TAATTAATATATGCAGCTCT+TGG	0.501793	4.4:+19883235	None:intergenic
TGTGTAAGAGGAATTGGCTT+TGG	0.503548	4.4:+19884497	None:intergenic
AGTAGTACCAATTGCTGAAG+AGG	0.507421	4.4:+19884599	None:intergenic
AAACTGGATTAGAAGGCATA+TGG	0.508202	4.4:-19883489	MS.gene35106:CDS
ATTGGGGTGAATAACATTGA+TGG	0.510060	4.4:-19883199	MS.gene35106:CDS
AGATGAATATTGTTTGGCAA+AGG	0.512835	4.4:-19883798	MS.gene35106:CDS
AATAAGTTTCCACTTCTATG+AGG	0.514228	4.4:+19883370	None:intergenic
TGCTCACATAATTGATGTGA+AGG	0.514863	4.4:-19884040	MS.gene35106:CDS
TCTCTAACCAAACCAAGCTC+AGG	0.524526	4.4:+19883661	None:intergenic
ATAGACAAATATGAGCTTCG+AGG	0.525149	4.4:+19884651	None:intergenic
AGCGGCGGCCACGACTTTGA+GGG	0.526742	4.4:-19884327	MS.gene35106:CDS
TGTCCTACTGTAGGTGTTGG+TGG	0.531106	4.4:-19884132	MS.gene35106:CDS
TGTAGATAAACTCATGCCCT+TGG	0.532718	4.4:-19883698	MS.gene35106:CDS
GTTTCTTGACAGAGAAGCAA+TGG	0.534469	4.4:-19884013	MS.gene35106:CDS
CTACAAGCAAGCTAGTATCT+GGG	0.536155	4.4:-19883167	MS.gene35106:CDS
TGTTATTCACCCCAATATCA+AGG	0.539511	4.4:+19883206	None:intergenic
TTATAGAGACCTTGATATTG+GGG	0.545838	4.4:-19883215	MS.gene35106:CDS
AATAACTATAGAGACATTGA+AGG	0.545897	4.4:+19884556	None:intergenic
TATACCTTCTCATGTGTCCA+AGG	0.549356	4.4:-19883056	MS.gene35106:CDS
AGGAAACTTCTCTTGAACCA+AGG	0.549379	4.4:+19883681	None:intergenic
CGTCCCTTGGACACATGAGA+AGG	0.549392	4.4:+19883052	None:intergenic
GCAAGTGTTTGTCCTACTGT+AGG	0.562475	4.4:-19884141	MS.gene35106:CDS
GTAAACACTGTCACAATCGA+TGG	0.562630	4.4:+19883904	None:intergenic
TTTCTTGACAGAGAAGCAAT+GGG	0.565816	4.4:-19884012	MS.gene35106:CDS
GGTGGACACTTCAGTGGTGG+TGG	0.566542	4.4:-19884114	MS.gene35106:CDS
GTTTGTCCTACTGTAGGTGT+TGG	0.572069	4.4:-19884135	MS.gene35106:CDS
CAACAAAGCTTGTTCACAAG+TGG	0.578289	4.4:-19883855	MS.gene35106:CDS
GGAAACTTCTCTTGAACCAA+GGG	0.587211	4.4:+19883682	None:intergenic
TGACAGAGAAGCAATGGGTG+AGG	0.588886	4.4:-19884007	MS.gene35106:CDS
ACATAATTGATGTGAAGGGT+AGG	0.589985	4.4:-19884035	MS.gene35106:CDS
GACAACAAATGGAACTTCAG+AGG	0.600388	4.4:+19884293	None:intergenic
TAGAGGTGTGATAATTACAA+GGG	0.601185	4.4:+19884416	None:intergenic
CTGTTAAGCAACACTTCAGG+CGG	0.606215	4.4:+19883574	None:intergenic
ATGATATGGTTTCCATATGG+TGG	0.610132	4.4:-19883430	MS.gene35106:CDS
GTTCAATCTGGTGCAACACT+TGG	0.613052	4.4:-19884213	MS.gene35106:CDS
TCGGTTCATTGGCATCAAGA+AGG	0.613335	4.4:-19883334	MS.gene35106:CDS
CAGTAGGACAAACACTTGCA+GGG	0.613601	4.4:+19884145	None:intergenic
GCATCAAGAAGGTGATGAGG+TGG	0.615161	4.4:-19883323	MS.gene35106:CDS
TGAATATGGGAAATTTCTAG+AGG	0.616023	4.4:+19884399	None:intergenic
ATGATGATATGGTTTCCATA+TGG	0.616039	4.4:-19883433	MS.gene35106:CDS
GTTGGTGGACACTTCAGTGG+TGG	0.625730	4.4:-19884117	MS.gene35106:CDS
CGCTTCGAATTCGTATCTGT+AGG	0.628395	4.4:+19884346	None:intergenic
GAATTCGTATCTGTAGGCCG+TGG	0.634094	4.4:+19884352	None:intergenic
GGTGTTGGTGGACACTTCAG+TGG	0.638405	4.4:-19884120	MS.gene35106:CDS
TACAAGCAAGCTAGTATCTG+GGG	0.640553	4.4:-19883166	MS.gene35106:CDS
GCTCACATAATTGATGTGAA+GGG	0.641206	4.4:-19884039	MS.gene35106:CDS
ATACCTTCTCATGTGTCCAA+GGG	0.642295	4.4:-19883055	MS.gene35106:CDS
TTGGCATCAAGAAGGTGATG+AGG	0.656241	4.4:-19883326	MS.gene35106:CDS
AAGACAGACCCTCAAAGTCG+TGG	0.662183	4.4:+19884319	None:intergenic
AGAGGTGTGATAATTACAAG+GGG	0.662301	4.4:+19884417	None:intergenic
TGTCCACCAACACCTACAGT+AGG	0.663218	4.4:+19884129	None:intergenic
CAGATACGAATTCGAAGCGG+CGG	0.669694	4.4:-19884342	MS.gene35106:CDS
CTACAGATACGAATTCGAAG+CGG	0.745982	4.4:-19884345	MS.gene35106:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTTAAATTCAAGTAAAAA+AGG	-	chr4.4:19883927-19883946	MS.gene35106:CDS	10.0%
!!	TAGAAAACTTTATAGTTATA+TGG	-	chr4.4:19884421-19884440	MS.gene35106:CDS	15.0%
!!	AATATTGTATTGAAATGAGT+TGG	-	chr4.4:19884060-19884079	MS.gene35106:CDS	20.0%
!!	ATATAGAGATGAATATTGTT+TGG	-	chr4.4:19883895-19883914	MS.gene35106:CDS	20.0%
!	AAAATATGGTTGCTTGAATA+TGG	+	chr4.4:19883317-19883336	None:intergenic	25.0%
!	AAATATGGTTGCTTGAATAT+GGG	+	chr4.4:19883316-19883335	None:intergenic	25.0%
!	AATAACTATAGAGACATTGA+AGG	+	chr4.4:19883146-19883165	None:intergenic	25.0%
!	AATTATAGAGACCTTGATAT+TGG	-	chr4.4:19884482-19884501	MS.gene35106:CDS	25.0%
!	ATTATAGAGACCTTGATATT+GGG	-	chr4.4:19884483-19884502	MS.gene35106:CDS	25.0%
!	CTTATTCATGATTCAATACT+CGG	-	chr4.4:19884346-19884365	MS.gene35106:CDS	25.0%
!	TAATTAATATATGCAGCTCT+TGG	+	chr4.4:19884467-19884486	None:intergenic	25.0%
!	TGGAAAAACTGCATATTAAT+TGG	-	chr4.4:19884396-19884415	MS.gene35106:CDS	25.0%
!!	TCATTTCTGAAAAAGTTTAG+AGG	+	chr4.4:19884617-19884636	None:intergenic	25.0%
!!!	TACTTTTTTCAGTTTCCAAA+AGG	-	chr4.4:19884098-19884117	MS.gene35106:CDS	25.0%
!!!	TGAGATTTTGAGTTGAAAAT+TGG	+	chr4.4:19883236-19883255	None:intergenic	25.0%
!!!	TTATTTCAAGCTTTGTTTCT+TGG	-	chr4.4:19883975-19883994	MS.gene35106:CDS	25.0%
	AAAGTTTAGAGGATCAACTT+TGG	+	chr4.4:19884606-19884625	None:intergenic	30.0%
	AAGACCATATTTACGCATTA+AGG	+	chr4.4:19883619-19883638	None:intergenic	30.0%
	AATAAGTTTCCACTTCTATG+AGG	+	chr4.4:19884332-19884351	None:intergenic	30.0%
	AGATGAATATTGTTTGGCAA+AGG	-	chr4.4:19883901-19883920	MS.gene35106:CDS	30.0%
	ATGAGATCAATGACAACAAA+TGG	+	chr4.4:19883420-19883439	None:intergenic	30.0%
	ATGATGATATGGTTTCCATA+TGG	-	chr4.4:19884266-19884285	MS.gene35106:CDS	30.0%
	ATGTACACAAAAAAACTGCA+TGG	-	chr4.4:19883463-19883482	MS.gene35106:CDS	30.0%
	CAAGAACAACTTCAAAAGAT+TGG	-	chr4.4:19884568-19884587	MS.gene35106:CDS	30.0%
	GAACCATCTTCATCAAATAA+AGG	+	chr4.4:19884236-19884255	None:intergenic	30.0%
	GATGAATATTGTTTGGCAAA+GGG	-	chr4.4:19883902-19883921	MS.gene35106:CDS	30.0%
	GCTTGAAATAAAACTAGTAC+TGG	+	chr4.4:19883966-19883985	None:intergenic	30.0%
	GTTTACTGTTCCAAAAACAT+TGG	-	chr4.4:19883812-19883831	MS.gene35106:CDS	30.0%
	TATTGATGTGTAAGAGGAAT+TGG	+	chr4.4:19883211-19883230	None:intergenic	30.0%
	TGTACACAAAAAAACTGCAT+GGG	-	chr4.4:19883464-19883483	MS.gene35106:CDS	30.0%
	TTATAGAGACCTTGATATTG+GGG	-	chr4.4:19884484-19884503	MS.gene35106:CDS	30.0%
!	ATATTTTGTTCCCAATACCA+CGG	-	chr4.4:19883330-19883349	MS.gene35106:CDS	30.0%
!	GCATTTTGTTCCAATGTTTT+TGG	+	chr4.4:19883825-19883844	None:intergenic	30.0%
!	TAGAGGTGTGATAATTACAA+GGG	+	chr4.4:19883286-19883305	None:intergenic	30.0%
!	TGAATATGGGAAATTTCTAG+AGG	+	chr4.4:19883303-19883322	None:intergenic	30.0%
!!	AATGGGTGAGGATTATTTTT+GGG	-	chr4.4:19883704-19883723	MS.gene35106:CDS	30.0%
!!	TTTTTGGCAAGTAAACTTGA+TGG	-	chr4.4:19883870-19883889	MS.gene35106:CDS	30.0%
!!!	AACCAAGAGTTTTGCTTTTT+TGG	+	chr4.4:19883533-19883552	None:intergenic	30.0%
!!!	GATTATTTTTGGGCTATTAG+AGG	-	chr4.4:19883714-19883733	MS.gene35106:CDS	30.0%
!!!	GTTTTGGAGTCATAATTTCA+TGG	-	chr4.4:19883751-19883770	MS.gene35106:CDS	30.0%
	ACATAATTGATGTGAAGGGT+AGG	-	chr4.4:19883664-19883683	MS.gene35106:CDS	35.0%
	AGAATTCCAATTCCTGAAAC+TGG	-	chr4.4:19884194-19884213	MS.gene35106:CDS	35.0%
	AGCCAAAAAAGCAAAACTCT+TGG	-	chr4.4:19883528-19883547	MS.gene35106:CDS	35.0%
	ATAGACAAATATGAGCTTCG+AGG	+	chr4.4:19883051-19883070	None:intergenic	35.0%
	ATGATATGGTTTCCATATGG+TGG	-	chr4.4:19884269-19884288	MS.gene35106:CDS	35.0%
	ATTCCATTTCCTCATAGAAG+TGG	-	chr4.4:19884320-19884339	MS.gene35106:CDS	35.0%
	ATTGGGGTGAATAACATTGA+TGG	-	chr4.4:19884500-19884519	MS.gene35106:CDS	35.0%
	CCAAAGATGCAATGATGATA+TGG	-	chr4.4:19884255-19884274	MS.gene35106:CDS	35.0%
	CCATATCATCATTGCATCTT+TGG	+	chr4.4:19884258-19884277	None:intergenic	35.0%
	GCTCACATAATTGATGTGAA+GGG	-	chr4.4:19883660-19883679	MS.gene35106:CDS	35.0%
	GGAACCTTAATGCGTAAATA+TGG	-	chr4.4:19883612-19883631	MS.gene35106:CDS	35.0%
	GTGATAATTACAAGGGGTTT+AGG	+	chr4.4:19883279-19883298	None:intergenic	35.0%
	TCATTTACCTCTTCAGCAAT+TGG	-	chr4.4:19883093-19883112	MS.gene35106:CDS	35.0%
	TCTAATCCAGTTTCAGGAAT+TGG	+	chr4.4:19884203-19884222	None:intergenic	35.0%
	TGATTCAATACTCGGTTCAT+TGG	-	chr4.4:19884354-19884373	MS.gene35106:CDS	35.0%
	TGCTCACATAATTGATGTGA+AGG	-	chr4.4:19883659-19883678	MS.gene35106:CDS	35.0%
	TGTTATTCACCCCAATATCA+AGG	+	chr4.4:19884496-19884515	None:intergenic	35.0%
	TTTCCACTTCTATGAGGAAA+TGG	+	chr4.4:19884326-19884345	None:intergenic	35.0%
	TTTCTTGACAGAGAAGCAAT+GGG	-	chr4.4:19883687-19883706	MS.gene35106:CDS	35.0%
!	AAACTGGATTAGAAGGCATA+TGG	-	chr4.4:19884210-19884229	MS.gene35106:CDS	35.0%
!	AGAGGTGTGATAATTACAAG+GGG	+	chr4.4:19883285-19883304	None:intergenic	35.0%
!	ATTCCTGAAACTGGATTAGA+AGG	-	chr4.4:19884203-19884222	MS.gene35106:CDS	35.0%
!	CAATGGGTGAGGATTATTTT+TGG	-	chr4.4:19883703-19883722	MS.gene35106:CDS	35.0%
!	CTAGAGGTGTGATAATTACA+AGG	+	chr4.4:19883287-19883306	None:intergenic	35.0%
!	GTGGTATTGGGAACAAAATA+TGG	+	chr4.4:19883331-19883350	None:intergenic	35.0%
!	GTTTCCATATGGTGGAAAAA+TGG	-	chr4.4:19884277-19884296	MS.gene35106:CDS	35.0%
!	TGGCCTTTATTTGATGAAGA+TGG	-	chr4.4:19884230-19884249	MS.gene35106:CDS	35.0%
!	TGTTCACAAGTGGCAATTTT+TGG	-	chr4.4:19883854-19883873	MS.gene35106:CDS	35.0%
!!	GTATCCATTTTTCCACCATA+TGG	+	chr4.4:19884284-19884303	None:intergenic	35.0%
!!	TTGGAGTATTGATGTGTAAG+AGG	+	chr4.4:19883217-19883236	None:intergenic	35.0%
!!!	TATTTTTGGGCTATTAGAGG+TGG	-	chr4.4:19883717-19883736	MS.gene35106:CDS	35.0%
	AAAACTGCATGGGTTCAATC+TGG	-	chr4.4:19883474-19883493	MS.gene35106:CDS	40.0%
	AGGAAACTTCTCTTGAACCA+AGG	+	chr4.4:19884021-19884040	None:intergenic	40.0%
	AGTAGTACCAATTGCTGAAG+AGG	+	chr4.4:19883103-19883122	None:intergenic	40.0%
	ATACCTTCTCATGTGTCCAA+GGG	-	chr4.4:19884644-19884663	MS.gene35106:CDS	40.0%
	ATGCCTTCTAATCCAGTTTC+AGG	+	chr4.4:19884209-19884228	None:intergenic	40.0%
	CTACAAGCAAGCTAGTATCT+GGG	-	chr4.4:19884532-19884551	MS.gene35106:CDS	40.0%
	CTACAGATACGAATTCGAAG+CGG	-	chr4.4:19883354-19883373	MS.gene35106:CDS	40.0%
	GACAACAAATGGAACTTCAG+AGG	+	chr4.4:19883409-19883428	None:intergenic	40.0%
	GGAAACTTCTCTTGAACCAA+GGG	+	chr4.4:19884020-19884039	None:intergenic	40.0%
	GTAAACACTGTCACAATCGA+TGG	+	chr4.4:19883798-19883817	None:intergenic	40.0%
	GTTCTGTTAAGCAACACTTC+AGG	+	chr4.4:19884131-19884150	None:intergenic	40.0%
	GTTTCTTGACAGAGAAGCAA+TGG	-	chr4.4:19883686-19883705	MS.gene35106:CDS	40.0%
	TACAAGCAAGCTAGTATCTG+GGG	-	chr4.4:19884533-19884552	MS.gene35106:CDS	40.0%
	TATACCTTCTCATGTGTCCA+AGG	-	chr4.4:19884643-19884662	MS.gene35106:CDS	40.0%
	TGTAGATAAACTCATGCCCT+TGG	-	chr4.4:19884001-19884020	MS.gene35106:CDS	40.0%
!	CAACAAAGCTTGTTCACAAG+TGG	-	chr4.4:19883844-19883863	MS.gene35106:CDS	40.0%
!	CTTGGTGACTTCGAAACAAA+AGG	+	chr4.4:19884449-19884468	None:intergenic	40.0%
!	TGTGTAAGAGGAATTGGCTT+TGG	+	chr4.4:19883205-19883224	None:intergenic	40.0%
	ACAGTAGGACAAACACTTGC+AGG	+	chr4.4:19883558-19883577	None:intergenic	45.0%
	CAAGAGAAGTTTCCTGAGCT+TGG	-	chr4.4:19884026-19884045	MS.gene35106:CDS	45.0%
	CAGTAGGACAAACACTTGCA+GGG	+	chr4.4:19883557-19883576	None:intergenic	45.0%
	CGCTTCGAATTCGTATCTGT+AGG	+	chr4.4:19883356-19883375	None:intergenic	45.0%
	CTGTTAAGCAACACTTCAGG+CGG	+	chr4.4:19884128-19884147	None:intergenic	45.0%
	GAAGTTTCCTGAGCTTGGTT+TGG	-	chr4.4:19884031-19884050	MS.gene35106:CDS	45.0%
	GCAAGTGTTTGTCCTACTGT+AGG	-	chr4.4:19883558-19883577	MS.gene35106:CDS	45.0%
	GCTACAAGCAAGCTAGTATC+TGG	-	chr4.4:19884531-19884550	MS.gene35106:CDS	45.0%
	GTTCAATCTGGTGCAACACT+TGG	-	chr4.4:19883486-19883505	MS.gene35106:CDS	45.0%
	GTTTGTCCTACTGTAGGTGT+TGG	-	chr4.4:19883564-19883583	MS.gene35106:CDS	45.0%
	TATCTGTAGGCCGTGGTATT+GGG	+	chr4.4:19883343-19883362	None:intergenic	45.0%
	TCGGTTCATTGGCATCAAGA+AGG	-	chr4.4:19884365-19884384	MS.gene35106:CDS	45.0%
	TCTCTAACCAAACCAAGCTC+AGG	+	chr4.4:19884041-19884060	None:intergenic	45.0%
	TTGGCATCAAGAAGGTGATG+AGG	-	chr4.4:19884373-19884392	MS.gene35106:CDS	45.0%
!	TTTTGGGCTATTAGAGGTGG+TGG	-	chr4.4:19883720-19883739	MS.gene35106:CDS	45.0%
!!	GTGAGCATCGATGACGTTAT+CGG	+	chr4.4:19883646-19883665	None:intergenic	45.0%
	AAGACAGACCCTCAAAGTCG+TGG	+	chr4.4:19883383-19883402	None:intergenic	50.0%
	CAGATACGAATTCGAAGCGG+CGG	-	chr4.4:19883357-19883376	MS.gene35106:CDS	50.0%
	GAATTCGTATCTGTAGGCCG+TGG	+	chr4.4:19883350-19883369	None:intergenic	50.0%
	GCATCAAGAAGGTGATGAGG+TGG	-	chr4.4:19884376-19884395	MS.gene35106:CDS	50.0%
	GTATCTGTAGGCCGTGGTAT+TGG	+	chr4.4:19883344-19883363	None:intergenic	50.0%
	TGACAGAGAAGCAATGGGTG+AGG	-	chr4.4:19883692-19883711	MS.gene35106:CDS	50.0%
	TGTCCACCAACACCTACAGT+AGG	+	chr4.4:19883573-19883592	None:intergenic	50.0%
!	ACTTCAGGCGGAGAACCTTT+TGG	+	chr4.4:19884116-19884135	None:intergenic	50.0%
!!	CACTTCAGTGGTGGTGGATA+TGG	-	chr4.4:19883591-19883610	MS.gene35106:CDS	50.0%
!!	TGTCCTACTGTAGGTGTTGG+TGG	-	chr4.4:19883567-19883586	MS.gene35106:CDS	50.0%
	CGTCCCTTGGACACATGAGA+AGG	+	chr4.4:19884650-19884669	None:intergenic	55.0%
!	GTTGGTGGACACTTCAGTGG+TGG	-	chr4.4:19883582-19883601	MS.gene35106:CDS	55.0%
!	TGGGCTATTAGAGGTGGTGG+AGG	-	chr4.4:19883723-19883742	MS.gene35106:CDS	55.0%
!!	GGTGTTGGTGGACACTTCAG+TGG	-	chr4.4:19883579-19883598	MS.gene35106:CDS	55.0%
!!!	GGTGGTGGAGGAGCTAGTTT+TGG	-	chr4.4:19883735-19883754	MS.gene35106:CDS	55.0%
	GGTGGACACTTCAGTGGTGG+TGG	-	chr4.4:19883585-19883604	MS.gene35106:CDS	60.0%
	AAGCGGCGGCCACGACTTTG+AGG	-	chr4.4:19883371-19883390	MS.gene35106:CDS	65.0%
	AGCGGCGGCCACGACTTTGA+GGG	-	chr4.4:19883372-19883391	MS.gene35106:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	19883045	19884676	19883045	ID=MS.gene35106
chr4.4	mRNA	19883045	19884676	19883045	ID=MS.gene35106.t1;Parent=MS.gene35106
chr4.4	exon	19883045	19884676	19883045	ID=MS.gene35106.t1.exon1;Parent=MS.gene35106.t1
chr4.4	CDS	19883045	19884676	19883045	ID=cds.MS.gene35106.t1;Parent=MS.gene35106.t1

Gene Sequence

>MS.gene35106

ATGCCTCGAAGCTCATATTTGTCTATTATACTAATTGCTATTTTATTTTCATTTACCTCTTCAGCAATTGGTACTACTACTAATGAAGATAATAACTTCCTTCAATGTCTCTATAGTTATTCACATAACTCAACTTCAATCTCTGAAGTTGTGTACACCAAAGCCAATTCCTCTTACACATCAATACTCCAATTTTCAACTCAAAATCTCAGATTTGCAACAAACACAACACCTAAACCCCTTGTAATTATCACACCTCTAGAAATTTCCCATATTCAAGCAACCATATTTTGTTCCCAATACCACGGCCTACAGATACGAATTCGAAGCGGCGGCCACGACTTTGAGGGTCTGTCTTATGCCTCTGAAGTTCCATTTGTTGTCATTGATCTCATAAACTTCAGAGAAATTGAAATAAATGTACACAAAAAAACTGCATGGGTTCAATCTGGTGCAACACTTGGTGAACTTTACTACGCAATTAGCCAAAAAAGCAAAACTCTTGGTTTCCCTGCAAGTGTTTGTCCTACTGTAGGTGTTGGTGGACACTTCAGTGGTGGTGGATATGGAACCTTAATGCGTAAATATGGTCTTGCAGCCGATAACGTCATCGATGCTCACATAATTGATGTGAAGGGTAGGTTTCTTGACAGAGAAGCAATGGGTGAGGATTATTTTTGGGCTATTAGAGGTGGTGGAGGAGCTAGTTTTGGAGTCATAATTTCATGGAAGATTAAACTTGTTCATGTTCCATCGATTGTGACAGTGTTTACTGTTCCAAAAACATTGGAACAAAATGCAACAAAGCTTGTTCACAAGTGGCAATTTTTGGCAAGTAAACTTGATGGAAATATAGAGATGAATATTGTTTGGCAAAGGGTAAATTTAAATTCAAGTAAAAAAGGTGAGTCAAAGTCACCAGTACTAGTTTTATTTCAAGCTTTGTTTCTTGGAGATGTAGATAAACTCATGCCCTTGGTTCAAGAGAAGTTTCCTGAGCTTGGTTTGGTTAGAGAATATTGTATTGAAATGAGTTGGATTGAATCAGTTCTTTACTTTTTTCAGTTTCCAAAAGGTTCTCCGCCTGAAGTGTTGCTTAACAGAACACAAGCTACACTTGATATTTTCAAAGCAAAATCTGATTTTGTGAGAATTCCAATTCCTGAAACTGGATTAGAAGGCATATGGCCTTTATTTGATGAAGATGGTTCCAAAGATGCAATGATGATATGGTTTCCATATGGTGGAAAAATGGATACTATTTCAGAGTCTGAAATTCCATTTCCTCATAGAAGTGGAAACTTATTCATGATTCAATACTCGGTTCATTGGCATCAAGAAGGTGATGAGGTGGAAAAACTGCATATTAATTGGATTAGAAAACTTTATAGTTATATGGAACCTTTTGTTTCGAAGTCACCAAGAGCTGCATATATTAATTATAGAGACCTTGATATTGGGGTGAATAACATTGATGGATACACAAGCTACAAGCAAGCTAGTATCTGGGGTGTTAAATACTTCAAGAACAACTTCAAAAGATTGGCAAAAGTGAAGACCAAAGTTGATCCTCTAAACTTTTTCAGAAATGAACAAAGTATACCTTCTCATGTGTCCAAGGGACGCAAATAG

Protein sequence

>MS.gene35106.t1

MPRSSYLSIILIAILFSFTSSAIGTTTNEDNNFLQCLYSYSHNSTSISEVVYTKANSSYTSILQFSTQNLRFATNTTPKPLVIITPLEISHIQATIFCSQYHGLQIRIRSGGHDFEGLSYASEVPFVVIDLINFREIEINVHKKTAWVQSGATLGELYYAISQKSKTLGFPASVCPTVGVGGHFSGGGYGTLMRKYGLAADNVIDAHIIDVKGRFLDREAMGEDYFWAIRGGGGASFGVIISWKIKLVHVPSIVTVFTVPKTLEQNATKLVHKWQFLASKLDGNIEMNIVWQRVNLNSSKKGESKSPVLVLFQALFLGDVDKLMPLVQEKFPELGLVREYCIEMSWIESVLYFFQFPKGSPPEVLLNRTQATLDIFKAKSDFVRIPIPETGLEGIWPLFDEDGSKDAMMIWFPYGGKMDTISESEIPFPHRSGNLFMIQYSVHWHQEGDEVEKLHINWIRKLYSYMEPFVSKSPRAAYINYRDLDIGVNNIDGYTSYKQASIWGVKYFKNNFKRLAKVKTKVDPLNFFRNEQSIPSHVSKGRK