AlfalfaGEDB | MS.gene009481

M. sativa cultivar XinJiangDaYe / MS.gene009481

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0016491 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050660 GO:0050662 GO:0055114 GO:0071949 GO:0097159 GO:1901265 GO:1901363
PFAM: PF01565.26 PF08031.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009481.t1	AES68535.2	89.5	505	27	1	1	479	27	531	2.40E-258	901

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009481.t1	Q9SUC6	53.2	485	194	6	15	468	47	529	1.1e-147	524.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009481.t1	G7J0D0	89.5	505	27	1	1	479	27	531	1.8e-258	901.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene028369	MS.gene009481	PPI
MS.gene009481	MS.gene028352	PPI
MS.gene009481	MS.gene36435	PPI
MS.gene009481	MS.gene28725	PPI
MS.gene009481	MS.gene36445	PPI
MS.gene009481	MS.gene28723	PPI
MS.gene009481	MS.gene35083	PPI
MS.gene009481	MS.gene35113	PPI
MS.gene35104	MS.gene009481	PPI
MS.gene35105	MS.gene009481	PPI
MS.gene36438	MS.gene009481	PPI
MS.gene003357	MS.gene009481	PPI
MS.gene009481	MS.gene28742	PPI
MS.gene28724	MS.gene009481	PPI
MS.gene009481	MS.gene047977	PPI
MS.gene009481	MS.gene36444	PPI
MS.gene02146	MS.gene009481	PPI
MS.gene009481	MS.gene028347	PPI
MS.gene009481	MS.gene35102	PPI
MS.gene009481	MS.gene28726	PPI
MS.gene36421	MS.gene009481	PPI
MS.gene009481	MS.gene28717	PPI
MS.gene009481	MS.gene35106	PPI
MS.gene009481	MS.gene028353	PPI
MS.gene009481	MS.gene28727	PPI
MS.gene009481	MS.gene35114	PPI
MS.gene009481	MS.gene028354	PPI
MS.gene009481	MS.gene35103	PPI
MS.gene009481	MS.gene36437	PPI
MS.gene009481	MS.gene028357	PPI
MS.gene009481	MS.gene36439	PPI
MS.gene009481	MS.gene028346	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009481.t1	MTR_3g009880	89.109	505	29	2	1	479	27	531	0.0	908
MS.gene009481.t1	MTR_3g009760	81.891	497	62	3	1	469	27	523	0.0	830
MS.gene009481.t1	MTR_3g009820	80.885	497	67	3	1	469	27	523	0.0	825
MS.gene009481.t1	MTR_4g094488	52.883	503	199	7	1	466	34	535	0.0	521
MS.gene009481.t1	MTR_2g031420	52.600	500	201	8	1	469	34	528	1.41e-179	514
MS.gene009481.t1	MTR_2g031460	51.786	504	207	8	1	473	34	532	3.63e-178	510
MS.gene009481.t1	MTR_4g094495	52.390	502	203	7	1	466	37	538	1.66e-177	509
MS.gene009481.t1	MTR_4g094478	51.594	502	209	6	1	468	34	535	2.80e-177	508
MS.gene009481.t1	MTR_4g094492	51.889	503	207	7	1	468	34	536	4.82e-177	508
MS.gene009481.t1	MTR_2g031390	49.109	505	222	6	1	472	31	533	2.19e-175	504
MS.gene009481.t1	MTR_4g094418	54.566	438	163	5	70	471	1	438	1.08e-168	489
MS.gene009481.t1	MTR_4g094480	48.400	500	224	6	1	466	34	533	4.45e-168	485
MS.gene009481.t1	MTR_4g094518	50.497	503	214	6	1	470	32	532	6.07e-168	484
MS.gene009481.t1	MTR_2g031560	47.817	504	221	8	1	468	26	523	1.36e-167	484
MS.gene009481.t1	MTR_4g094498	47.809	502	229	6	2	473	41	539	6.49e-165	477
MS.gene009481.t1	MTR_4g094520	50.000	484	207	9	19	470	54	534	9.24e-165	476
MS.gene009481.t1	MTR_2g031590	47.835	485	211	8	22	468	52	532	3.99e-163	472
MS.gene009481.t1	MTR_4g091200	46.107	488	230	7	11	466	38	524	1.18e-147	432
MS.gene009481.t1	MTR_2g031490	43.227	502	249	7	1	468	39	538	2.94e-146	429
MS.gene009481.t1	MTR_3g009850	88.444	225	26	0	245	469	5	229	7.98e-146	416
MS.gene009481.t1	MTR_4g088355	47.807	456	206	6	42	466	77	531	2.24e-145	427
MS.gene009481.t1	MTR_2g031510	43.539	503	246	8	1	468	41	540	2.60e-145	427
MS.gene009481.t1	MTR_4g057990	45.032	473	231	5	22	466	49	520	3.83e-143	421
MS.gene009481.t1	MTR_6g017205	44.376	489	239	7	10	466	37	524	1.30e-142	420
MS.gene009481.t1	MTR_4g091190	46.272	456	211	7	42	466	74	526	4.03e-140	413
MS.gene009481.t1	MTR_4g091150	45.238	504	237	12	1	468	40	540	5.84e-140	413
MS.gene009481.t1	MTR_4g094515	43.200	500	250	7	1	468	653	1150	1.13e-137	425
MS.gene009481.t1	MTR_4g094515	41.800	500	255	7	1	466	41	538	1.35e-130	406
MS.gene009481.t1	MTR_4g091170	45.133	452	200	6	45	466	107	540	1.74e-135	403
MS.gene009481.t1	MTR_2g023590	43.319	464	227	8	42	473	12	471	6.01e-131	388
MS.gene009481.t1	MTR_1g076830	38.144	485	265	8	26	476	60	543	4.25e-112	342
MS.gene009481.t1	MTR_2g031600	55.063	158	68	2	312	468	245	400	7.54e-56	191
MS.gene009481.t1	MTR_2g031600	43.750	192	81	3	22	186	53	244	4.19e-48	171
MS.gene009481.t1	MTR_2g084370	87.640	89	7	1	94	178	1	89	7.45e-49	163
MS.gene009481.t1	MTR_2g084405	60.000	80	6	2	94	147	1	80	2.67e-17	77.8
MS.gene009481.t1	MTR_8g062280	53.846	52	24	0	414	465	21	72	4.61e-12	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene009481.t1	AT4G20860	53.626	455	181	6	42	468	77	529	5.25e-179	512
MS.gene009481.t1	AT5G44360	51.190	504	207	11	1	470	34	532	2.61e-173	498
MS.gene009481.t1	AT5G44360	51.190	504	207	11	1	470	50	548	6.47e-173	498
MS.gene009481.t1	AT5G44400	51.875	480	192	10	22	466	59	534	5.13e-166	479
MS.gene009481.t1	AT1G30760	49.585	482	204	8	18	466	73	548	2.28e-163	473
MS.gene009481.t1	AT1G30760	49.585	482	204	8	18	466	55	530	2.45e-163	473
MS.gene009481.t1	AT2G34790	49.582	478	202	7	22	466	57	528	2.96e-161	467
MS.gene009481.t1	AT5G44390	49.385	488	202	11	22	470	61	542	2.98e-156	455
MS.gene009481.t1	AT5G44440	44.554	505	244	9	1	472	32	533	2.38e-152	444
MS.gene009481.t1	AT4G20820	45.657	495	232	8	1	466	38	524	9.47e-152	443
MS.gene009481.t1	AT5G44440	44.554	505	244	9	1	472	102	603	3.31e-151	444
MS.gene009481.t1	AT1G26420	44.246	504	241	10	1	470	30	527	2.05e-147	432
MS.gene009481.t1	AT1G26390	45.114	481	229	8	22	470	52	529	2.44e-146	429
MS.gene009481.t1	AT1G26380	45.929	479	222	8	22	468	52	525	4.66e-145	426
MS.gene009481.t1	AT5G44380	47.879	495	223	10	5	466	45	537	1.15e-144	425
MS.gene009481.t1	AT5G44380	47.879	495	223	10	5	466	85	577	3.00e-144	426
MS.gene009481.t1	AT1G26410	44.215	484	235	8	18	470	72	551	7.47e-144	424
MS.gene009481.t1	AT5G44410	46.331	477	214	10	26	468	61	529	1.23e-141	417
MS.gene009481.t1	AT1G30710	42.690	513	240	12	2	475	34	531	1.10e-139	412
MS.gene009481.t1	AT1G34575	42.254	497	249	9	2	467	34	523	7.94e-139	410
MS.gene009481.t1	AT1G30700	46.555	479	214	10	26	468	54	526	2.69e-137	406
MS.gene009481.t1	AT1G26400	43.908	476	233	8	20	465	50	521	1.02e-135	402
MS.gene009481.t1	AT1G01980	41.765	510	259	9	1	474	33	540	4.51e-135	400
MS.gene009481.t1	AT4G20800	42.052	497	254	8	1	466	30	523	3.44e-134	398
MS.gene009481.t1	AT1G11770	41.283	499	260	8	1	468	33	529	1.09e-133	397
MS.gene009481.t1	AT4G20840	39.920	501	264	9	1	468	39	535	1.90e-133	396
MS.gene009481.t1	AT1G30730	43.421	456	225	7	42	467	72	524	8.26e-130	387
MS.gene009481.t1	AT4G20830	40.600	500	262	9	1	468	40	536	4.48e-128	383
MS.gene009481.t1	AT4G20830	40.600	500	262	9	1	468	40	536	1.31e-127	382
MS.gene009481.t1	AT1G30720	40.681	499	261	10	1	467	30	525	3.99e-127	380
MS.gene009481.t1	AT2G34810	39.604	505	267	10	1	468	36	539	8.31e-124	372
MS.gene009481.t1	AT1G30740	40.438	502	262	9	1	468	30	528	2.17e-119	360
MS.gene009481.t1	AT1G30740	40.438	502	262	9	1	468	33	531	2.51e-119	360

Find 91 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGGGGCATCAAGTACTTTA+AGG	0.182488	3.2:+3837576	MS.gene009481:CDS
AAGCTGGTTTAGAAGGTATT+TGG	0.194170	3.2:+3837242	MS.gene009481:CDS
AATGAGAGTTTCCCTGAATT+AGG	0.214946	3.2:+3837058	MS.gene009481:CDS
CACATTAGCATTACTTATAA+TGG	0.248787	3.2:+3837285	MS.gene009481:CDS
GGAGGTAGTGCTGCTAGTTT+TGG	0.287867	3.2:+3836788	MS.gene009481:CDS
CATCCACTTTATATGTTTGT+TGG	0.301040	3.2:-3837428	None:intergenic
CTTGATGAGTTCACCCATCT+TGG	0.322731	3.2:-3836078	None:intergenic
GTGGATTTGGTACCTTGTTT+AGG	0.323328	3.2:+3836657	MS.gene009481:CDS
TAGAGGTGGTGGAATTAATT+AGG	0.323700	3.2:+3837702	MS.gene009481:CDS
GGGCTGCATATTACAACTAT+AGG	0.325111	3.2:+3837497	MS.gene009481:CDS
CTGTTTAGCAAGAGTTCTAT+AGG	0.326862	3.2:-3837157	None:intergenic
AATCTCTTTGCTGCATAGTA+TGG	0.329557	3.2:-3836151	None:intergenic
AGAGAGAGTTAAACATGGTT+TGG	0.351945	3.2:-3837000	None:intergenic
TTTCCCTGAATTAGGGTTGC+AGG	0.354321	3.2:+3837066	MS.gene009481:CDS
CACATCAGTGGAGGTGGATT+TGG	0.356454	3.2:+3836644	MS.gene009481:CDS
ATGAGAGTTTCCCTGAATTA+GGG	0.357011	3.2:+3837059	MS.gene009481:CDS
TCTAAACCAGCTTCTGGTAT+AGG	0.365053	3.2:-3837232	None:intergenic
GCTACTCAGAAGCAAGTGTT+TGG	0.368108	3.2:+3837557	MS.gene009481:CDS
ATTCAGGCTGGTGCAACATT+AGG	0.380469	3.2:+3836309	MS.gene009481:CDS
AGCAGCACTACCTCCTCTTA+TGG	0.383413	3.2:-3836780	None:intergenic
GCTTTCGTAATAGATGTAAA+TGG	0.384315	3.2:+3836713	MS.gene009481:CDS
TAATCGGATTTCGCTTTGAA+TGG	0.386047	3.2:-3837199	None:intergenic
AAATGAATCTGCTTGGATTC+AGG	0.391403	3.2:+3836293	MS.gene009481:CDS
TTCAGAATAGCTACTAACTA+TGG	0.395170	3.2:-3835986	None:intergenic
TCACTCATTCTTCCACCATA+TGG	0.398978	3.2:-3837310	None:intergenic
AGAATAGTTGCTCAAACTAA+TGG	0.401600	3.2:+3836959	MS.gene009481:CDS
TGGGGCATCAAGTACTTTAA+GGG	0.402731	3.2:+3837577	MS.gene009481:CDS
ATACCTTCTAAACCAGCTTC+TGG	0.406374	3.2:-3837238	None:intergenic
ATACCAGAAGCTGGTTTAGA+AGG	0.411336	3.2:+3837235	MS.gene009481:CDS
CCACCTATGAATGAGCTTTG+TGG	0.412900	3.2:-3836897	None:intergenic
CTACTCAGAAGCAAGTGTTT+GGG	0.418460	3.2:+3837558	MS.gene009481:CDS
GGCTGCATATTACAACTATA+GGG	0.426482	3.2:+3837498	MS.gene009481:CDS
CTTGGAGACTTTGAAACATA+AGG	0.427868	3.2:-3837475	None:intergenic
GATGAGATCAATCATGATAA+AGG	0.434881	3.2:-3836241	None:intergenic
TCATTCTTGCATGGAAGATA+AGG	0.459271	3.2:+3836813	MS.gene009481:CDS
ATCTTGCAAATGAATCTGCT+TGG	0.463262	3.2:+3836286	MS.gene009481:CDS
AAGACTGCATTGAAATGAGT+TGG	0.465070	3.2:+3837092	MS.gene009481:CDS
AACTATAGGGATCTTGATAT+AGG	0.467290	3.2:+3837511	MS.gene009481:CDS
ATGTTTAACTCTCTCTTCCT+TGG	0.469431	3.2:+3837007	MS.gene009481:CDS
GATTCTTAATAGAAAATCAA+TGG	0.470027	3.2:+3836739	MS.gene009481:CDS
AATCGGATTTCGCTTTGAAT+GGG	0.470031	3.2:-3837198	None:intergenic
TAAGGGAAACTTTAAGCGAT+TGG	0.470910	3.2:+3837594	MS.gene009481:CDS
TTTCCTGCAACCCTAATTCA+GGG	0.475582	3.2:-3837069	None:intergenic
ATGAGATCAATCATGATAAA+GGG	0.478729	3.2:-3836240	None:intergenic
AAGATAGTCCTTCATAATCA+TGG	0.479154	3.2:-3836203	None:intergenic
CATTGAAACAAAATCCAAGA+TGG	0.486669	3.2:+3836064	MS.gene009481:CDS
GTCTTTACTTCTTCACATAG+AGG	0.488926	3.2:+3837685	MS.gene009481:CDS
AGTCCAACAAACATATAAAG+TGG	0.489218	3.2:+3837425	MS.gene009481:CDS
ATGGTGAAAACAGTCACAAT+AGG	0.490465	3.2:-3836851	None:intergenic
TTCAATGATTCCAACACTTG+TGG	0.495973	3.2:-3836048	None:intergenic
GAGCCACAAAGCTCATTCAT+AGG	0.497880	3.2:+3836894	MS.gene009481:CDS
ATACTATGCAGCAAAGAGAT+TGG	0.503786	3.2:+3836153	MS.gene009481:CDS
ACTTCTTCACATAGAGGTGG+TGG	0.504499	3.2:+3837691	MS.gene009481:CDS
CTTGTACAACATACAATACA+TGG	0.505452	3.2:+3837375	MS.gene009481:CDS
TTCCAACACTTGTGGATACA+AGG	0.515360	3.2:-3836040	None:intergenic
TTTCACCATTCATAAAACTC+TGG	0.515900	3.2:+3836865	MS.gene009481:CDS
GGCGGTCACATCAGTGGAGG+TGG	0.518000	3.2:+3836638	MS.gene009481:intron
ATTCATAAAACTCTGGAAGA+AGG	0.518363	3.2:+3836872	MS.gene009481:CDS
ATTCTTAATAGAAAATCAAT+GGG	0.522100	3.2:+3836740	MS.gene009481:CDS
ATCCTTGTATCCACAAGTGT+TGG	0.532948	3.2:+3836038	MS.gene009481:CDS
GGTACCTTGTTTAGGAAACA+TGG	0.537180	3.2:+3836665	MS.gene009481:CDS
TTACTTATAATGGAACCATA+TGG	0.538421	3.2:+3837295	MS.gene009481:CDS
TCTTGCATGGAAGATAAGGT+TGG	0.542256	3.2:+3836817	MS.gene009481:CDS
TGAATTTCTGATTCATGAGA+AGG	0.547415	3.2:-3836123	None:intergenic
ATTGAAACAAAATCCAAGAT+GGG	0.551532	3.2:+3836065	MS.gene009481:CDS
CAAGATTAATGTCAATCGAA+CGG	0.553223	3.2:-3836269	None:intergenic
TAGTTGTAATATGCAGCCCT+TGG	0.555414	3.2:-3837493	None:intergenic
TTTACTTCTTCACATAGAGG+TGG	0.557178	3.2:+3837688	MS.gene009481:CDS
CTTATGTTTCAAAGTCTCCA+AGG	0.559379	3.2:+3837476	MS.gene009481:CDS
AAAGAGCCTATACCAGAAGC+TGG	0.561825	3.2:+3837226	MS.gene009481:CDS
GATTGGTGTGCAAATTAGAG+TGG	0.569189	3.2:+3836170	MS.gene009481:CDS
GAAGTAAAGACATTTAGTAG+AGG	0.572122	3.2:-3837673	None:intergenic
ACATACAATACATGGTCAAG+TGG	0.580747	3.2:+3837383	MS.gene009481:CDS
TTATGTTTCAAAGTCTCCAA+GGG	0.584994	3.2:+3837477	MS.gene009481:CDS
GTGCAAATTAGAGTGGTTAG+TGG	0.589648	3.2:+3836177	MS.gene009481:CDS
ATAGGGATCTTGATATAGGA+AGG	0.589814	3.2:+3837515	MS.gene009481:CDS
AGTGGTGGCCATGATTATGA+AGG	0.592283	3.2:+3836195	MS.gene009481:CDS
GAATCTGCTTGGATTCAGGC+TGG	0.594184	3.2:+3836297	MS.gene009481:CDS
TACTCAGAAGCAAGTGTTTG+GGG	0.597018	3.2:+3837559	MS.gene009481:CDS
GGAATAGGCGGTCACATCAG+TGG	0.603755	3.2:+3836632	MS.gene009481:intron
GTGAAAACAGTCACAATAGG+TGG	0.604309	3.2:-3836848	None:intergenic
TCGTAATAGATGTAAATGGA+AGG	0.606869	3.2:+3836717	MS.gene009481:CDS
GAAGGTGTCATAATGAGAAG+AGG	0.607937	3.2:-3836105	None:intergenic
CTTATAATGGAACCATATGG+TGG	0.625352	3.2:+3837298	MS.gene009481:CDS
CATACAATACATGGTCAAGT+GGG	0.625707	3.2:+3837384	MS.gene009481:CDS
TAGACCATGTTTCCTAAACA+AGG	0.647398	3.2:-3836669	None:intergenic
CCACAAAGCTCATTCATAGG+TGG	0.650755	3.2:+3836897	MS.gene009481:CDS
TTACGAAAGCATCAACAACA+TGG	0.668839	3.2:-3836700	None:intergenic
AAGGAAGAGAGAGTTAAACA+TGG	0.687832	3.2:-3837005	None:intergenic
ATAGGCGGTCACATCAGTGG+AGG	0.689151	3.2:+3836635	MS.gene009481:intron
CAAATTAGAGTGGTTAGTGG+TGG	0.705025	3.2:+3836180	MS.gene009481:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTCTTAATAGAAAATCAAT+GGG	+	chr3.2:3836740-3836759	MS.gene009481:CDS	15.0%
!!	GATTCTTAATAGAAAATCAA+TGG	+	chr3.2:3836739-3836758	MS.gene009481:CDS	20.0%
!!	TTTATAACTTCTGTGAAAAT+AGG	+	chr3.2:3836534-3836553	MS.gene009481:intron	20.0%
!	AGAGAGCTTATATAAATAAG+CGG	-	chr3.2:3836494-3836513	None:intergenic	25.0%
!	ATGAGATCAATCATGATAAA+GGG	-	chr3.2:3836243-3836262	None:intergenic	25.0%
!	ATTGAAACAAAATCCAAGAT+GGG	+	chr3.2:3836065-3836084	MS.gene009481:CDS	25.0%
!	CACATTAGCATTACTTATAA+TGG	+	chr3.2:3837285-3837304	MS.gene009481:CDS	25.0%
!!	TATAGGCTCTTTTACATAAT+CGG	-	chr3.2:3837218-3837237	None:intergenic	25.0%
!!	TTAAGTTTTCTTTTCTTCCA+AGG	-	chr3.2:3837027-3837046	None:intergenic	25.0%
!!	TTACTTATAATGGAACCATA+TGG	+	chr3.2:3837295-3837314	MS.gene009481:CDS	25.0%
!!!	ATTAAGTTGTTTTTCCAAAC+AGG	+	chr3.2:3836593-3836612	MS.gene009481:intron	25.0%
!!!	TTAAGTTGTTTTTCCAAACA+GGG	+	chr3.2:3836594-3836613	MS.gene009481:intron	25.0%
	AACTATAGGGATCTTGATAT+AGG	+	chr3.2:3837511-3837530	MS.gene009481:CDS	30.0%
	AAGATAGTCCTTCATAATCA+TGG	-	chr3.2:3836206-3836225	None:intergenic	30.0%
	AGAATAGTTGCTCAAACTAA+TGG	+	chr3.2:3836959-3836978	MS.gene009481:CDS	30.0%
	AGCACAAGCAAATTATAAGA+CGG	+	chr3.2:3836419-3836438	MS.gene009481:intron	30.0%
	AGTCCAACAAACATATAAAG+TGG	+	chr3.2:3837425-3837444	MS.gene009481:CDS	30.0%
	CAAGATTAATGTCAATCGAA+CGG	-	chr3.2:3836272-3836291	None:intergenic	30.0%
	CATCCACTTTATATGTTTGT+TGG	-	chr3.2:3837431-3837450	None:intergenic	30.0%
	CATTGAAACAAAATCCAAGA+TGG	+	chr3.2:3836064-3836083	MS.gene009481:CDS	30.0%
	CTTGTACAACATACAATACA+TGG	+	chr3.2:3837375-3837394	MS.gene009481:CDS	30.0%
	GAAGTAAAGACATTTAGTAG+AGG	-	chr3.2:3837676-3837695	None:intergenic	30.0%
	GATGAGATCAATCATGATAA+AGG	-	chr3.2:3836244-3836263	None:intergenic	30.0%
	GCTTTCGTAATAGATGTAAA+TGG	+	chr3.2:3836713-3836732	MS.gene009481:CDS	30.0%
	TCGTAATAGATGTAAATGGA+AGG	+	chr3.2:3836717-3836736	MS.gene009481:CDS	30.0%
	TGAATTTCTGATTCATGAGA+AGG	-	chr3.2:3836126-3836145	None:intergenic	30.0%
	TTATGTTTCAAAGTCTCCAA+GGG	+	chr3.2:3837477-3837496	MS.gene009481:CDS	30.0%
	TTCAGAATAGCTACTAACTA+TGG	-	chr3.2:3835989-3836008	None:intergenic	30.0%
	TTTCACCATTCATAAAACTC+TGG	+	chr3.2:3836865-3836884	MS.gene009481:CDS	30.0%
!	ATTCATAAAACTCTGGAAGA+AGG	+	chr3.2:3836872-3836891	MS.gene009481:CDS	30.0%
!	CAATCTGTTTTGTATTTTGC+AGG	+	chr3.2:3837118-3837137	MS.gene009481:CDS	30.0%
!	CTCATTCCTGAAAAAGTTTT+GGG	-	chr3.2:3837644-3837663	None:intergenic	30.0%
!	TCATTCCTGAAAAAGTTTTG+GGG	-	chr3.2:3837643-3837662	None:intergenic	30.0%
!!	TTCTTCCAGAGTTTTATGAA+TGG	-	chr3.2:3836873-3836892	None:intergenic	30.0%
!!!	AATGGGAGAAGATGTTTTTT+GGG	+	chr3.2:3836757-3836776	MS.gene009481:CDS	30.0%
!!!	GATAGACACTGTTTTTTCAT+TGG	-	chr3.2:3836013-3836032	None:intergenic	30.0%
	AAATGAATCTGCTTGGATTC+AGG	+	chr3.2:3836293-3836312	MS.gene009481:CDS	35.0%
	AAGACTGCATTGAAATGAGT+TGG	+	chr3.2:3837092-3837111	MS.gene009481:CDS	35.0%
	AAGGAAGAGAGAGTTAAACA+TGG	-	chr3.2:3837008-3837027	None:intergenic	35.0%
	AAGTCAAACTAATTCACCTG+AGG	-	chr3.2:3836382-3836401	None:intergenic	35.0%
	AATCTCTTTGCTGCATAGTA+TGG	-	chr3.2:3836154-3836173	None:intergenic	35.0%
	AATGAGAGTTTCCCTGAATT+AGG	+	chr3.2:3837058-3837077	MS.gene009481:CDS	35.0%
	ACATACAATACATGGTCAAG+TGG	+	chr3.2:3837383-3837402	MS.gene009481:CDS	35.0%
	AGAGAGAGTTAAACATGGTT+TGG	-	chr3.2:3837003-3837022	None:intergenic	35.0%
	AGTCAAACTAATTCACCTGA+GGG	-	chr3.2:3836381-3836400	None:intergenic	35.0%
	ATACTATGCAGCAAAGAGAT+TGG	+	chr3.2:3836153-3836172	MS.gene009481:CDS	35.0%
	ATAGGGATCTTGATATAGGA+AGG	+	chr3.2:3837515-3837534	MS.gene009481:CDS	35.0%
	ATCTTGCAAATGAATCTGCT+TGG	+	chr3.2:3836286-3836305	MS.gene009481:CDS	35.0%
	ATGAGAGTTTCCCTGAATTA+GGG	+	chr3.2:3837059-3837078	MS.gene009481:CDS	35.0%
	ATGGTGAAAACAGTCACAAT+AGG	-	chr3.2:3836854-3836873	None:intergenic	35.0%
	ATGTTTAACTCTCTCTTCCT+TGG	+	chr3.2:3837007-3837026	MS.gene009481:CDS	35.0%
	CATACAATACATGGTCAAGT+GGG	+	chr3.2:3837384-3837403	MS.gene009481:CDS	35.0%
	CTGTTTAGCAAGAGTTCTAT+AGG	-	chr3.2:3837160-3837179	None:intergenic	35.0%
	CTTATGTTTCAAAGTCTCCA+AGG	+	chr3.2:3837476-3837495	MS.gene009481:CDS	35.0%
	GGCTGCATATTACAACTATA+GGG	+	chr3.2:3837498-3837517	MS.gene009481:CDS	35.0%
	GTCTTTACTTCTTCACATAG+AGG	+	chr3.2:3837685-3837704	MS.gene009481:CDS	35.0%
	TAAGGGAAACTTTAAGCGAT+TGG	+	chr3.2:3837594-3837613	MS.gene009481:CDS	35.0%
	TAGACCATGTTTCCTAAACA+AGG	-	chr3.2:3836672-3836691	None:intergenic	35.0%
	TCATTCTTGCATGGAAGATA+AGG	+	chr3.2:3836813-3836832	MS.gene009481:CDS	35.0%
	TTCAATGATTCCAACACTTG+TGG	-	chr3.2:3836051-3836070	None:intergenic	35.0%
	TTTACTTCTTCACATAGAGG+TGG	+	chr3.2:3837688-3837707	MS.gene009481:CDS	35.0%
!	AATCGGATTTCGCTTTGAAT+GGG	-	chr3.2:3837201-3837220	None:intergenic	35.0%
!	CTTATAATGGAACCATATGG+TGG	+	chr3.2:3837298-3837317	MS.gene009481:CDS	35.0%
!	GCTCATTCCTGAAAAAGTTT+TGG	-	chr3.2:3837645-3837664	None:intergenic	35.0%
!	TAATCGGATTTCGCTTTGAA+TGG	-	chr3.2:3837202-3837221	None:intergenic	35.0%
!	TACAAGTTTCCTTTTCTGTG+TGG	-	chr3.2:3837361-3837380	None:intergenic	35.0%
!	TTCCTTTTCTGTGTGGAAAA+GGG	-	chr3.2:3837354-3837373	None:intergenic	35.0%
!	TTTCCTTTTCTGTGTGGAAA+AGG	-	chr3.2:3837355-3837374	None:intergenic	35.0%
!!	AAGCTGGTTTAGAAGGTATT+TGG	+	chr3.2:3837242-3837261	MS.gene009481:CDS	35.0%
!!	CTTGGAGACTTTGAAACATA+AGG	-	chr3.2:3837478-3837497	None:intergenic	35.0%
!!	TTACGAAAGCATCAACAACA+TGG	-	chr3.2:3836703-3836722	None:intergenic	35.0%
!!	TTGATCCCCAAAACTTTTTC+AGG	+	chr3.2:3837635-3837654	MS.gene009481:CDS	35.0%
!!!	CAATGGGAGAAGATGTTTTT+TGG	+	chr3.2:3836756-3836775	MS.gene009481:CDS	35.0%
	ATACCTTCTAAACCAGCTTC+TGG	-	chr3.2:3837241-3837260	None:intergenic	40.0%
	ATCCTTGTATCCACAAGTGT+TGG	+	chr3.2:3836038-3836057	MS.gene009481:CDS	40.0%
	CAAATTAGAGTGGTTAGTGG+TGG	+	chr3.2:3836180-3836199	MS.gene009481:CDS	40.0%
	CTACTCAGAAGCAAGTGTTT+GGG	+	chr3.2:3837558-3837577	MS.gene009481:CDS	40.0%
	GATTGGTGTGCAAATTAGAG+TGG	+	chr3.2:3836170-3836189	MS.gene009481:CDS	40.0%
	GGGCTGCATATTACAACTAT+AGG	+	chr3.2:3837497-3837516	MS.gene009481:CDS	40.0%
	GTCAAACTAATTCACCTGAG+GGG	-	chr3.2:3836380-3836399	None:intergenic	40.0%
	GTGAAAACAGTCACAATAGG+TGG	-	chr3.2:3836851-3836870	None:intergenic	40.0%
	GTGCAAATTAGAGTGGTTAG+TGG	+	chr3.2:3836177-3836196	MS.gene009481:CDS	40.0%
	TACTCAGAAGCAAGTGTTTG+GGG	+	chr3.2:3837559-3837578	MS.gene009481:CDS	40.0%
	TAGTTGTAATATGCAGCCCT+TGG	-	chr3.2:3837496-3837515	None:intergenic	40.0%
	TCACTCATTCTTCCACCATA+TGG	-	chr3.2:3837313-3837332	None:intergenic	40.0%
	TCCAAAGCGAGTAAAGTTCA+TGG	+	chr3.2:3836351-3836370	MS.gene009481:intron	40.0%
	TCCATGAACTTTACTCGCTT+TGG	-	chr3.2:3836355-3836374	None:intergenic	40.0%
	TCTAAACCAGCTTCTGGTAT+AGG	-	chr3.2:3837235-3837254	None:intergenic	40.0%
	TCTTGCATGGAAGATAAGGT+TGG	+	chr3.2:3836817-3836836	MS.gene009481:CDS	40.0%
	TTCCAACACTTGTGGATACA+AGG	-	chr3.2:3836043-3836062	None:intergenic	40.0%
	TTTCCTGCAACCCTAATTCA+GGG	-	chr3.2:3837072-3837091	None:intergenic	40.0%
!	ATACCAGAAGCTGGTTTAGA+AGG	+	chr3.2:3837235-3837254	MS.gene009481:CDS	40.0%
!	ATCCCTTTTCCACACAGAAA+AGG	+	chr3.2:3837349-3837368	MS.gene009481:CDS	40.0%
!	GGTACCTTGTTTAGGAAACA+TGG	+	chr3.2:3836665-3836684	MS.gene009481:CDS	40.0%
!	GTGGATTTGGTACCTTGTTT+AGG	+	chr3.2:3836657-3836676	MS.gene009481:CDS	40.0%
!	TGGGGCATCAAGTACTTTAA+GGG	+	chr3.2:3837577-3837596	MS.gene009481:CDS	40.0%
!	TTGGGGCATCAAGTACTTTA+AGG	+	chr3.2:3837576-3837595	MS.gene009481:CDS	40.0%
!	TTTTCCTGCAACCCTAATTC+AGG	-	chr3.2:3837073-3837092	None:intergenic	40.0%
!!	GAAGGTGTCATAATGAGAAG+AGG	-	chr3.2:3836108-3836127	None:intergenic	40.0%
!!	TTATGTCCAAGCGTTGGAAT+AGG	+	chr3.2:3836617-3836636	MS.gene009481:intron	40.0%
!!!	GATGTTTTTTGGGCCATAAG+AGG	+	chr3.2:3836767-3836786	MS.gene009481:CDS	40.0%
!!!	GTTTTGGAGTCATTCTTGCA+TGG	+	chr3.2:3836804-3836823	MS.gene009481:CDS	40.0%
	AAAGAGCCTATACCAGAAGC+TGG	+	chr3.2:3837226-3837245	MS.gene009481:CDS	45.0%
	AAAGTTCATGGATTCCCCTC+AGG	+	chr3.2:3836363-3836382	MS.gene009481:intron	45.0%
	ACTTCTTCACATAGAGGTGG+TGG	+	chr3.2:3837691-3837710	MS.gene009481:CDS	45.0%
	AGTGGTGGCCATGATTATGA+AGG	+	chr3.2:3836195-3836214	MS.gene009481:CDS	45.0%
	ATTCAGGCTGGTGCAACATT+AGG	+	chr3.2:3836309-3836328	MS.gene009481:CDS	45.0%
	CCACAAAGCTCATTCATAGG+TGG	+	chr3.2:3836897-3836916	MS.gene009481:CDS	45.0%
	CCACCTATGAATGAGCTTTG+TGG	-	chr3.2:3836900-3836919	None:intergenic	45.0%
	CTTGATGAGTTCACCCATCT+TGG	-	chr3.2:3836081-3836100	None:intergenic	45.0%
	GAGCCACAAAGCTCATTCAT+AGG	+	chr3.2:3836894-3836913	MS.gene009481:CDS	45.0%
	GCTACTCAGAAGCAAGTGTT+TGG	+	chr3.2:3837557-3837576	MS.gene009481:CDS	45.0%
	TTTCCCTGAATTAGGGTTGC+AGG	+	chr3.2:3837066-3837085	MS.gene009481:CDS	45.0%
!!	CGCTTTGAATGGGCTTTTGT+AGG	-	chr3.2:3837191-3837210	None:intergenic	45.0%
!!!	GTTTTTTGGGCCATAAGAGG+AGG	+	chr3.2:3836770-3836789	MS.gene009481:CDS	45.0%
	ACAGGGTTATGTCCAAGCGT+TGG	+	chr3.2:3836611-3836630	MS.gene009481:intron	50.0%
	AGCAGCACTACCTCCTCTTA+TGG	-	chr3.2:3836783-3836802	None:intergenic	50.0%
	CGCTTGGACATAACCCTGTT+TGG	-	chr3.2:3836610-3836629	None:intergenic	50.0%
	GAATCTGCTTGGATTCAGGC+TGG	+	chr3.2:3836297-3836316	MS.gene009481:CDS	50.0%
!	CACATCAGTGGAGGTGGATT+TGG	+	chr3.2:3836644-3836663	MS.gene009481:CDS	50.0%
!!	GGAGGTAGTGCTGCTAGTTT+TGG	+	chr3.2:3836788-3836807	MS.gene009481:CDS	50.0%
!!	TGTCCAAGCGTTGGAATAGG+CGG	+	chr3.2:3836620-3836639	MS.gene009481:intron	50.0%
	ATAGGCGGTCACATCAGTGG+AGG	+	chr3.2:3836635-3836654	MS.gene009481:intron	55.0%
	GGAATAGGCGGTCACATCAG+TGG	+	chr3.2:3836632-3836651	MS.gene009481:intron	55.0%
	TGACCGCCTATTCCAACGCT+TGG	-	chr3.2:3836626-3836645	None:intergenic	55.0%
	GGCGGTCACATCAGTGGAGG+TGG	+	chr3.2:3836638-3836657	MS.gene009481:intron	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	3835970	3837723	3835970	ID=MS.gene009481
chr3.2	mRNA	3835970	3837723	3835970	ID=MS.gene009481.t1;Parent=MS.gene009481
chr3.2	exon	3835970	3836330	3835970	ID=MS.gene009481.t1.exon1;Parent=MS.gene009481.t1
chr3.2	CDS	3835970	3836330	3835970	ID=cds.MS.gene009481.t1;Parent=MS.gene009481.t1
chr3.2	exon	3836639	3837723	3836639	ID=MS.gene009481.t1.exon2;Parent=MS.gene009481.t1
chr3.2	CDS	3836639	3837723	3836639	ID=cds.MS.gene009481.t1;Parent=MS.gene009481.t1

Gene Sequence

>MS.gene009481

ATGCAGTGCATGTCAACCATAGTTAGTAGCTATTCTGAATCCAATGAAAAAACAGTGTCTATCAACTCATCCTTGTATCCACAAGTGTTGGAATCATTGAAACAAAATCCAAGATGGGTGAACTCATCAAGCAAACCTCTTCTCATTATGACACCTTCTCATGAATCAGAAATTCAAGCAGCCATACTATGCAGCAAAGAGATTGGTGTGCAAATTAGAGTGGTTAGTGGTGGCCATGATTATGAAGGACTATCTTATCTTTGTAAGACACCCTTTATCATGATTGATCTCATCAACATCCGTTCGATTGACATTAATCTTGCAAATGAATCTGCTTGGATTCAGGCTGGTGCAACATTAGGTGAACTTTACTATAAAATCTCCAAAGCGAGTAAAGTTCATGGATTCCCCTCAGGTGAATTAGTTTGACTTTTTTGAGACTATCTACTAGCACAAGCAAATTATAAGACGGTCTGAGAGAGCTTGTGAAAATAGCTTATGACATGTTCATAAGCTATTTTCCGCTTATTTATATAAGCTCTCTACTATTGCTTGTGAAAAGAGTTTATAACTTCTGTGAAAATAGGCTAGACTTTATTAATTACTTTATTTATAAGCACTTAATTAAGTTGTTTTTCCAAACAGGGTTATGTCCAAGCGTTGGAATAGGCGGTCACATCAGTGGAGGTGGATTTGGTACCTTGTTTAGGAAACATGGTCTAGCAGCAGACCATGTTGTTGATGCTTTCGTAATAGATGTAAATGGAAGGATTCTTAATAGAAAATCAATGGGAGAAGATGTTTTTTGGGCCATAAGAGGAGGTAGTGCTGCTAGTTTTGGAGTCATTCTTGCATGGAAGATAAGGTTGGTTAGAGTTCCACCTATTGTGACTGTTTTCACCATTCATAAAACTCTGGAAGAAGGAGCCACAAAGCTCATTCATAGGTGGCAATACATAGCAGATAAATTGCATAAAGATCTTTTAATTAGAATAGTTGCTCAAACTAATGGTGCAAATTCAATAACAATCCAAACCATGTTTAACTCTCTCTTCCTTGGAAGAAAAGAAAACTTAATCACAATAATGAATGAGAGTTTCCCTGAATTAGGGTTGCAGGAAAAAGACTGCATTGAAATGAGTTGGATTCAATCTGTTTTGTATTTTGCAGGATTCGACAAATATGATCCTATAGAACTCTTGCTAAACAGAACTGTAGCCTACAAAAGCCCATTCAAAGCGAAATCCGATTATGTAAAAGAGCCTATACCAGAAGCTGGTTTAGAAGGTATTTGGAGAATGCTTCTAAAAGAAGACACATTAGCATTACTTATAATGGAACCATATGGTGGAAGAATGAGTGAAATTTCAGAATCTGAAATCCCTTTTCCACACAGAAAAGGAAACTTGTACAACATACAATACATGGTCAAGTGGGAAGTGAATAGCATTGAAGAGTCCAACAAACATATAAAGTGGATGAAAAAACTTTATAAATACATGACTCCTTATGTTTCAAAGTCTCCAAGGGCTGCATATTACAACTATAGGGATCTTGATATAGGAAGGAACAAGCATTTTAACACAAGCTACTCAGAAGCAAGTGTTTGGGGCATCAAGTACTTTAAGGGAAACTTTAAGCGATTGGCACAAATTAAGACAAAATTTGATCCCCAAAACTTTTTCAGGAATGAGCAGAGCATTCCTCTACTAAATGTCTTTACTTCTTCACATAGAGGTGGTGGAATTAATTAG

Protein sequence

>MS.gene009481.t1

MQCMSTIVSSYSESNEKTVSINSSLYPQVLESLKQNPRWVNSSSKPLLIMTPSHESEIQAAILCSKEIGVQIRVVSGGHDYEGLSYLCKTPFIMIDLINIRSIDINLANESAWIQAGATLGGHISGGGFGTLFRKHGLAADHVVDAFVIDVNGRILNRKSMGEDVFWAIRGGSAASFGVILAWKIRLVRVPPIVTVFTIHKTLEEGATKLIHRWQYIADKLHKDLLIRIVAQTNGANSITIQTMFNSLFLGRKENLITIMNESFPELGLQEKDCIEMSWIQSVLYFAGFDKYDPIELLLNRTVAYKSPFKAKSDYVKEPIPEAGLEGIWRMLLKEDTLALLIMEPYGGRMSEISESEIPFPHRKGNLYNIQYMVKWEVNSIEESNKHIKWMKKLYKYMTPYVSKSPRAAYYNYRDLDIGRNKHFNTSYSEASVWGIKYFKGNFKRLAQIKTKFDPQNFFRNEQSIPLLNVFTSSHRGGGIN