AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80547


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80547.t1 MTR_6g041980 96.875 320 10 0 1 320 24 343 0.0 647
MS.gene80547.t1 MTR_6g041980 94.064 219 13 0 1 219 24 242 1.30e-153 431
MS.gene80547.t1 MTR_6g053550 31.907 257 158 7 47 287 41 296 4.62e-30 116
MS.gene80547.t1 MTR_3g077410 29.615 260 166 7 47 291 41 298 1.55e-27 110
MS.gene80547.t1 MTR_4g105310 28.616 318 191 10 1 291 1 309 1.18e-26 107
MS.gene80547.t1 MTR_1g100395 30.534 262 154 8 46 287 32 285 4.33e-26 105
MS.gene80547.t1 MTR_1g100315 28.958 259 162 6 46 287 32 285 1.71e-25 104
MS.gene80547.t1 MTR_8g099995 28.912 294 189 9 29 303 19 311 1.01e-24 102
MS.gene80547.t1 MTR_8g098415 28.185 259 172 6 46 291 32 289 7.22e-24 99.8
MS.gene80547.t1 MTR_8g098415 28.185 259 172 6 46 291 32 289 1.10e-23 99.4
MS.gene80547.t1 MTR_1g100335 28.458 253 167 7 46 285 32 283 1.27e-23 99.0
MS.gene80547.t1 MTR_1g068970 27.562 283 186 7 47 310 38 320 2.19e-22 95.9
MS.gene80547.t1 MTR_7g099850 26.923 260 171 5 47 290 38 294 5.89e-22 94.7
MS.gene80547.t1 MTR_6g053600 30.233 215 137 5 47 248 27 241 1.48e-21 93.2
MS.gene80547.t1 MTR_4g105310 27.574 272 166 8 1 250 1 263 7.37e-21 90.5
MS.gene80547.t1 MTR_1g100305 28.235 255 169 6 46 287 32 285 2.11e-20 90.1
MS.gene80547.t1 MTR_1g100335 28.500 200 134 4 46 236 32 231 1.11e-19 87.0
MS.gene80547.t1 MTR_1g100335 28.643 199 133 4 47 236 33 231 1.33e-19 87.0
MS.gene80547.t1 MTR_8g098415 28.571 203 131 6 102 291 31 232 1.88e-18 83.6
MS.gene80547.t1 MTR_8g098415 28.161 174 118 2 47 213 33 206 1.28e-16 77.8
MS.gene80547.t1 MTR_3g009190 25.000 304 187 10 15 286 51 345 4.27e-15 75.5
MS.gene80547.t1 MTR_3g009190 25.000 304 187 10 15 286 33 327 4.51e-15 75.5
MS.gene80547.t1 MTR_3g091070 25.510 294 166 10 22 286 18 287 5.16e-15 75.1
MS.gene80547.t1 MTR_1g068970 26.316 228 149 7 102 310 26 253 5.18e-15 73.9
MS.gene80547.t1 MTR_4g087460 25.000 292 160 9 43 288 21 299 1.48e-13 70.5
MS.gene80547.t1 MTR_6g453040 26.531 196 130 5 15 201 33 223 2.56e-13 68.9
MS.gene80547.t1 MTR_6g453040 24.092 303 191 9 15 286 11 305 2.71e-13 70.1
MS.gene80547.t1 MTR_6g081020 26.482 253 166 9 41 276 59 308 7.37e-13 68.9
MS.gene80547.t1 MTR_6g453040 26.531 196 130 5 15 201 33 223 8.08e-13 68.2
MS.gene80547.t1 MTR_8g044240 36.559 93 59 0 39 131 67 159 1.41e-12 67.8
MS.gene80547.t1 MTR_2g079710 26.754 228 132 7 47 243 90 313 3.71e-12 67.0
MS.gene80547.t1 MTR_8g031940 25.581 301 159 11 40 286 3 292 5.43e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80547.t1 AT4G09750 76.875 320 74 0 1 320 1 320 0.0 532
MS.gene80547.t1 AT5G50130 31.439 264 155 9 47 290 40 297 1.68e-29 115
MS.gene80547.t1 AT5G50130 31.179 263 155 9 48 290 8 264 9.21e-29 112
MS.gene80547.t1 AT5G50130 31.061 264 153 10 48 290 8 263 1.45e-27 109
MS.gene80547.t1 AT4G24050 28.859 298 182 10 32 303 17 310 3.04e-26 106
MS.gene80547.t1 AT4G11410 29.528 254 167 5 46 287 32 285 3.53e-26 106
MS.gene80547.t1 AT5G50130 30.088 226 138 6 47 259 40 258 2.38e-25 102
MS.gene80547.t1 AT5G50130 31.250 224 132 7 47 254 40 257 3.49e-25 103
MS.gene80547.t1 AT5G50130 31.330 233 135 8 48 261 8 234 1.44e-24 101
MS.gene80547.t1 AT5G50130 30.131 229 133 8 47 259 40 257 3.91e-24 99.4
MS.gene80547.t1 AT5G50130 31.111 225 130 8 47 254 40 256 4.69e-24 100
MS.gene80547.t1 AT4G23420 29.231 260 161 7 46 287 32 286 1.57e-23 99.0
MS.gene80547.t1 AT4G23420 29.231 260 161 7 46 287 32 286 1.57e-23 99.0
MS.gene80547.t1 AT4G23420 29.231 260 161 7 46 287 49 303 1.79e-23 99.0
MS.gene80547.t1 AT5G50130 31.197 234 133 9 48 261 8 233 2.09e-23 98.2
MS.gene80547.t1 AT4G23430 27.907 258 167 6 46 287 32 286 3.51e-23 98.2
MS.gene80547.t1 AT4G11410 29.500 200 132 3 46 236 32 231 5.42e-23 96.3
MS.gene80547.t1 AT4G24050 29.075 227 142 6 32 240 17 242 3.39e-22 94.4
MS.gene80547.t1 AT4G23430 26.953 256 170 5 46 287 32 284 9.81e-22 94.0
MS.gene80547.t1 AT2G37540 29.452 292 172 10 46 318 36 312 1.83e-20 90.5
MS.gene80547.t1 AT4G23420 30.500 200 130 4 46 236 32 231 2.67e-20 89.0
MS.gene80547.t1 AT1G64590 26.515 264 171 6 47 291 38 297 2.96e-20 90.1
MS.gene80547.t1 AT4G23420 30.653 199 129 4 47 236 33 231 3.75e-20 88.6
MS.gene80547.t1 AT4G23430 27.559 254 163 6 46 287 32 276 5.82e-20 89.0
MS.gene80547.t1 AT5G02540 26.848 257 169 6 60 300 50 303 1.46e-18 85.1
MS.gene80547.t1 AT4G23430 26.587 252 166 5 46 287 32 274 1.67e-18 84.7
MS.gene80547.t1 AT2G37540 38.462 130 75 3 46 174 36 161 2.60e-17 80.5
MS.gene80547.t1 AT3G59710 26.937 271 164 10 43 286 18 281 3.15e-16 78.2
MS.gene80547.t1 AT5G61830 27.241 290 157 8 43 290 36 313 3.46e-16 78.2
MS.gene80547.t1 AT5G61830 27.241 290 157 8 43 290 36 313 3.46e-16 78.2
MS.gene80547.t1 AT3G59710 26.937 271 164 10 43 286 47 310 4.12e-16 78.2
MS.gene80547.t1 AT3G59710 27.306 271 163 11 43 286 28 291 5.46e-16 77.4
MS.gene80547.t1 AT5G15940 28.000 275 152 9 46 286 63 325 1.30e-14 74.3
MS.gene80547.t1 AT5G15940 28.000 275 152 9 46 286 63 325 1.30e-14 74.3
MS.gene80547.t1 AT5G15940 28.000 275 152 9 46 286 62 324 1.43e-14 73.9
MS.gene80547.t1 AT5G04070 26.545 275 156 7 46 286 61 323 1.32e-13 71.2
MS.gene80547.t1 AT4G27760 25.614 285 190 10 7 276 25 302 2.05e-12 67.8
MS.gene80547.t1 AT5G15940 27.099 262 147 8 46 273 63 314 2.93e-12 67.0
MS.gene80547.t1 AT5G53090 26.255 259 169 7 46 294 59 305 1.84e-11 64.7
MS.gene80547.t1 AT1G01800 25.497 302 155 10 47 293 8 294 2.07e-11 63.9
MS.gene80547.t1 AT5G53100 27.203 261 166 8 46 294 47 295 4.08e-11 63.5

Find 70 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTGAGAGCAGCTTTAA+TGG 0.245875 6.3:+35902938 MS.gene80547:CDS
AGGTTGCTCTAACAGAAAAT+TGG 0.270362 6.3:+35903680 MS.gene80547:intron
TCGATCCTTTGCATCTCTTT+AGG 0.288074 6.3:+35904350 MS.gene80547:CDS
CACAGTTACCTGTAGATCTT+TGG 0.313255 6.3:-35902846 None:intergenic
TCTCAAATTCAGACTAAAAC+TGG 0.322617 6.3:+35901269 MS.gene80547:CDS
ATATCAAGTCACTTGCTTCC+AGG 0.330836 6.3:+35901874 MS.gene80547:CDS
CGTGTCATCACAGTTTCTTC+TGG 0.349948 6.3:+35902800 MS.gene80547:CDS
CTATCTTGTATGTCGTAATA+AGG 0.351461 6.3:+35901226 MS.gene80547:CDS
ACATGGAGACAAACTGCTTT+TGG 0.355048 6.3:+35899202 MS.gene80547:CDS
TGAATTGATGGTACCGTTAC+TGG 0.361549 6.3:+35902757 MS.gene80547:CDS
GGTTGCTCTAACAGAAAATT+GGG 0.363426 6.3:+35903681 MS.gene80547:intron
CCAGATACCAACTTCTCCTT+TGG 0.367870 6.3:-35904231 None:intergenic
TTACGCCATGACTGAATTGA+TGG 0.373220 6.3:+35902745 MS.gene80547:CDS
TGCTCGAAACAAGCGTGTTC+AGG 0.379609 6.3:+35902973 MS.gene80547:CDS
TCTCACAATGTTTCTTATCA+AGG 0.380949 6.3:+35899080 None:intergenic
AGCATTATATGAAAGGTGAT+TGG 0.387014 6.3:-35904283 None:intergenic
CCAAAGGAGAAGTTGGTATC+TGG 0.391733 6.3:+35904231 MS.gene80547:CDS
GAGAAGAATTGCATCGTAAC+AGG 0.397382 6.3:+35901055 MS.gene80547:CDS
TGCATCAAGGTTAACAATGC+TGG 0.401264 6.3:+35902321 MS.gene80547:intron
ATTTGTGTTTCTGTTTCCTC+TGG 0.412827 6.3:-35901028 None:intergenic
CCAGGTTGGGCTGACACTCC+TGG 0.413309 6.3:+35903748 MS.gene80547:CDS
CAATCAAAATGTGTATTTAG+AGG 0.414226 6.3:+35901292 MS.gene80547:CDS
TAATTTACCAACACATGTAC+TGG 0.417616 6.3:-35901915 None:intergenic
ATTCTGAGAGCAGCTTTAAT+GGG 0.419800 6.3:+35902939 MS.gene80547:CDS
TACATACAGAAAAGCAGGTT+TGG 0.423098 6.3:-35899248 None:intergenic
TTACTCAATGCATCCAGGTT+GGG 0.424661 6.3:+35903735 MS.gene80547:CDS
GTTACGATGCAATTCTTCTC+TGG 0.429603 6.3:-35901052 None:intergenic
ACAGGAGCAAACTCTGGAAT+TGG 0.433631 6.3:+35901073 MS.gene80547:CDS
ACTGTGATGACACGTGCATC+AGG 0.434764 6.3:-35902791 None:intergenic
CCTAATTAATTACAGGTTAG+CGG 0.441515 6.3:+35904152 MS.gene80547:intron
AAGGTGCGGACACGGTTATC+TGG 0.442747 6.3:+35904196 MS.gene80547:CDS
CTAATTAATTACAGGTTAGC+GGG 0.456045 6.3:+35904153 MS.gene80547:intron
GCATTATATGAAAGGTGATT+GGG 0.474067 6.3:-35904282 None:intergenic
GAAATTACATACAGAAAAGC+AGG 0.485423 6.3:-35899253 None:intergenic
TCCCTTGACCAAAGATCTAC+AGG 0.490363 6.3:+35902838 MS.gene80547:CDS
TTTACTCAATGCATCCAGGT+TGG 0.525856 6.3:+35903734 MS.gene80547:CDS
CCAGGAGTGTCAGCCCAACC+TGG 0.529866 6.3:-35903748 None:intergenic
TTGTGATCTTTCATCTGTCA+CGG 0.529881 6.3:+35901851 MS.gene80547:CDS
AATCGAGTTACTACATCAGA+AGG 0.531699 6.3:+35902357 MS.gene80547:CDS
GTCATCACAGTTTCTTCTGG+TGG 0.534610 6.3:+35902803 MS.gene80547:CDS
CTTGTTTCGAGCATACTGTA+AGG 0.535266 6.3:-35902963 None:intergenic
GTGAAACGTACAAGAACAAA+GGG 0.539891 6.3:+35903704 MS.gene80547:CDS
ACCTGTAGATCTTTGGTCAA+GGG 0.546962 6.3:-35902839 None:intergenic
ATTGGTTATGCGGCAGCTGA+AGG 0.553460 6.3:+35901091 MS.gene80547:CDS
AAGCTTAGAACAAGCGAAGA+AGG 0.555151 6.3:+35904177 MS.gene80547:CDS
ACTACAACCAAAGGAGAAGT+TGG 0.556290 6.3:+35904224 MS.gene80547:CDS
TTCTAAGAATTTCAAACCAG+AGG 0.557905 6.3:+35901012 MS.gene80547:CDS
GAATGTTCCAGTACATGTGT+TGG 0.567662 6.3:+35901908 MS.gene80547:CDS
TACCTGTAGATCTTTGGTCA+AGG 0.568894 6.3:-35902840 None:intergenic
CTTTCATATAATGCTACAAG+TGG 0.572310 6.3:+35904291 MS.gene80547:CDS
AAGCGAAGAAGGTGCGGACA+CGG 0.573484 6.3:+35904188 MS.gene80547:CDS
CACTTGTAGCATTATATGAA+AGG 0.574575 6.3:-35904290 None:intergenic
ATCGTAACAGGAGCAAACTC+TGG 0.579578 6.3:+35901067 MS.gene80547:CDS
TGCGGACACGGTTATCTGGT+TGG 0.583033 6.3:+35904200 MS.gene80547:CDS
TTAAGCCTAAAGAGATGCAA+AGG 0.587308 6.3:-35904355 None:intergenic
ACGTACAAGAACAAAGGGAT+AGG 0.589903 6.3:+35903709 MS.gene80547:CDS
CGGTACCATCAATTCAGTCA+TGG 0.602047 6.3:-35902750 None:intergenic
GGGGAAGCTTTCTCCAGTAA+CGG 0.603395 6.3:-35902770 None:intergenic
TGTGATGACACGTGCATCAG+GGG 0.607622 6.3:-35902789 None:intergenic
CTGGTTGGCACTACAACCAA+AGG 0.614640 6.3:+35904215 MS.gene80547:CDS
CTGTGATGACACGTGCATCA+GGG 0.619232 6.3:-35902790 None:intergenic
TCGTAATAAGGAGAGAGGAG+AGG 0.632019 6.3:+35901238 MS.gene80547:CDS
TAGAACAAGCGAAGAAGGTG+CGG 0.638692 6.3:+35904182 MS.gene80547:CDS
GGTGAAACGTACAAGAACAA+AGG 0.649536 6.3:+35903703 MS.gene80547:CDS
GTATGTCGTAATAAGGAGAG+AGG 0.651473 6.3:+35901233 MS.gene80547:CDS
TAATTAATTACAGGTTAGCG+GGG 0.656099 6.3:+35904154 MS.gene80547:intron
ATCGAGTTACTACATCAGAA+GGG 0.664466 6.3:+35902358 MS.gene80547:CDS
AAACTCTGGAATTGGTTATG+CGG 0.681764 6.3:+35901081 MS.gene80547:CDS
CAGCTGAAGGACTTGCACAG+CGG 0.704085 6.3:+35901104 MS.gene80547:CDS
GTTGCTCTAACAGAAAATTG+GGG 0.751049 6.3:+35903682 MS.gene80547:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTATATAAAATAT+TGG + chr6.3:35903850-35903869 MS.gene80547:intron 0.0%
!! AACTAATAAATGATTAAAAA+TGG - chr6.3:35899291-35899310 None:intergenic 10.0%
!! AAGTTTAATATAAAAACTTA+CGG + chr6.3:35902148-35902167 MS.gene80547:intron 10.0%
!! ATGAAAATAATTATTGTTAT+TGG + chr6.3:35899898-35899917 MS.gene80547:intron 10.0%
!!! AGTTTTTATATTAAACTTAT+CGG - chr6.3:35902146-35902165 None:intergenic 10.0%
!!! TTTATCTTTTGTTATAAAAT+AGG + chr6.3:35901522-35901541 MS.gene80547:intron 10.0%
!! AAAAACATAATCAAGTATTT+AGG + chr6.3:35899553-35899572 MS.gene80547:intron 15.0%
!! AATTTAGCACATTAATTTAT+AGG + chr6.3:35899401-35899420 MS.gene80547:intron 15.0%
!! ACATTCAAAAATAAATGAAA+CGG - chr6.3:35900822-35900841 None:intergenic 15.0%
!! AGTTTAATATAAAAACTTAC+GGG + chr6.3:35902149-35902168 MS.gene80547:intron 15.0%
!! TCATAATAATTCTTAGAATT+TGG - chr6.3:35900599-35900618 None:intergenic 15.0%
!! TTTAATGAAATGTGAAATTA+AGG - chr6.3:35899124-35899143 None:intergenic 15.0%
!!! AGATTTTCAAAAGAATAAAT+TGG - chr6.3:35902284-35902303 None:intergenic 15.0%
!!! ATCATCATTATATATCTTTT+AGG - chr6.3:35899314-35899333 None:intergenic 15.0%
!!! ATTTTCATAATCATAATACT+AGG - chr6.3:35899886-35899905 None:intergenic 15.0%
!! AACATAGTAAATGTTAATAC+TGG - chr6.3:35900772-35900791 None:intergenic 20.0%
!! ATTAGGTCAGTATATTAATT+AGG - chr6.3:35904138-35904157 None:intergenic 20.0%
!! ATTATGCAACAAATATATAG+AGG + chr6.3:35900174-35900193 MS.gene80547:intron 20.0%
!! ATTATTTGTTTCATGCAAAT+TGG + chr6.3:35899145-35899164 MS.gene80547:intron 20.0%
!! TAGGACAAAAATATCAATTT+AGG + chr6.3:35899420-35899439 MS.gene80547:intron 20.0%
!! TATGAAAAAACAACTTATGA+AGG - chr6.3:35899679-35899698 None:intergenic 20.0%
!!! AATAATCAATAGGTTTTCTA+TGG - chr6.3:35903834-35903853 None:intergenic 20.0%
!!! GTACTGATATTTTAAATTCA+AGG + chr6.3:35903017-35903036 MS.gene80547:intron 20.0%
!!! GTTCTTTTCTTGAAATAAAA+TGG - chr6.3:35902207-35902226 None:intergenic 20.0%
!!! TAAAAAGTCTAATATGCTTT+TGG - chr6.3:35901770-35901789 None:intergenic 20.0%
!!! TTTTCAAATAGAAACTATAG+AGG - chr6.3:35902525-35902544 None:intergenic 20.0%
! AAAATTCCAGAAACAAACAT+CGG - chr6.3:35901144-35901163 None:intergenic 25.0%
! AAAGTAAGTCAATTGAAACA+CGG - chr6.3:35901340-35901359 None:intergenic 25.0%
! AGGATAATTCAGATGATTAT+AGG + chr6.3:35899440-35899459 MS.gene80547:intron 25.0%
! AGTTAGTATAATGATTGAGA+TGG + chr6.3:35900308-35900327 MS.gene80547:intron 25.0%
! ATACTGACCTAATTAATTAC+AGG + chr6.3:35904145-35904164 MS.gene80547:intron 25.0%
! ATCATTGAATTTCTTAAGTC+AGG + chr6.3:35899369-35899388 MS.gene80547:intron 25.0%
! ATTGACAACATTAGTCATTA+TGG - chr6.3:35903275-35903294 None:intergenic 25.0%
! CAAAAATAGTTGCTATAAGT+TGG + chr6.3:35899954-35899973 MS.gene80547:intron 25.0%
! CAAAATAAGTTCAAACCAAA+CGG - chr6.3:35899581-35899600 None:intergenic 25.0%
! CAATCAAAATGTGTATTTAG+AGG + chr6.3:35901292-35901311 MS.gene80547:CDS 25.0%
! TAAAATAAGCTAATCCAAAC+AGG + chr6.3:35899770-35899789 MS.gene80547:intron 25.0%
! TAACCTCTATTCAAGAAATA+AGG - chr6.3:35903572-35903591 None:intergenic 25.0%
! TAGCTTAATTGATTACTTGT+AGG - chr6.3:35901582-35901601 None:intergenic 25.0%
! TAGGGATTATAATCTCATAA+TGG - chr6.3:35903985-35904004 None:intergenic 25.0%
! TGAAACAATTTATTGCATCA+AGG + chr6.3:35902308-35902327 MS.gene80547:intron 25.0%
! TGAATTTAGCGATAAAAAAG+CGG + chr6.3:35899506-35899525 MS.gene80547:intron 25.0%
! TTTAGTTATATGCTAATCTG+TGG + chr6.3:35901174-35901193 MS.gene80547:intron 25.0%
!! AAGTTTATCTATTCTTTTCC+AGG + chr6.3:35902687-35902706 MS.gene80547:intron 25.0%
!! AATCCTTATTTCTTGAATAG+AGG + chr6.3:35903566-35903585 MS.gene80547:intron 25.0%
!! CAGCTATTTCAATCATTTAT+AGG + chr6.3:35902881-35902900 MS.gene80547:intron 25.0%
!! GTATTCGGATATTTCATTTT+TGG - chr6.3:35902021-35902040 None:intergenic 25.0%
!! GTTTTCTATGGATGATTTTA+AGG - chr6.3:35903822-35903841 None:intergenic 25.0%
!! TGAATTTAGCACATTAGTTT+AGG + chr6.3:35899476-35899495 MS.gene80547:intron 25.0%
!! TGAGACTTTTATAAGTTTGA+AGG + chr6.3:35900373-35900392 MS.gene80547:intron 25.0%
!! TTATTTCTTGAATAGAGGTT+AGG + chr6.3:35903571-35903590 MS.gene80547:intron 25.0%
!! TTTTATAAGTTTGAAGGATG+TGG + chr6.3:35900379-35900398 MS.gene80547:intron 25.0%
!!! AATTTTGCTGTCAATGTATT+AGG + chr6.3:35902719-35902738 MS.gene80547:CDS 25.0%
AATAGCTTACAAGATCGAAT+TGG + chr6.3:35900844-35900863 MS.gene80547:intron 30.0%
ACAAAAAAATCGCATTGTAG+TGG + chr6.3:35903222-35903241 MS.gene80547:intron 30.0%
AGATAAGCATTAAGACTTTG+AGG - chr6.3:35900639-35900658 None:intergenic 30.0%
AGCATTATATGAAAGGTGAT+TGG - chr6.3:35904286-35904305 None:intergenic 30.0%
ATCCAAACAGGCTAATTTAT+AGG + chr6.3:35899782-35899801 MS.gene80547:intron 30.0%
ATTAATTAGGACTACCAACA+TGG - chr6.3:35904125-35904144 None:intergenic 30.0%
CACATATCATTAGTCAACAT+AGG - chr6.3:35899928-35899947 None:intergenic 30.0%
CACTTGTAGCATTATATGAA+AGG - chr6.3:35904293-35904312 None:intergenic 30.0%
CATTATACTAACTTGAGCAT+TGG - chr6.3:35900301-35900320 None:intergenic 30.0%
CCTAATTAATTACAGGTTAG+CGG + chr6.3:35904152-35904171 MS.gene80547:intron 30.0%
CGGATAATTCAGATGATTAT+AGG + chr6.3:35899526-35899545 MS.gene80547:intron 30.0%
CTAATTAATTACAGGTTAGC+GGG + chr6.3:35904153-35904172 MS.gene80547:intron 30.0%
CTATATCGTGAGATACTTTA+GGG - chr6.3:35903951-35903970 None:intergenic 30.0%
CTATCTTGTATGTCGTAATA+AGG + chr6.3:35901226-35901245 MS.gene80547:CDS 30.0%
CTGATACCATCTTATAACTT+GGG - chr6.3:35900005-35900024 None:intergenic 30.0%
CTTAAACCCAAGTTATAAGA+TGG + chr6.3:35899996-35900015 MS.gene80547:intron 30.0%
CTTTAGCCTAAATTGTGTTT+CGG + chr6.3:35902602-35902621 MS.gene80547:intron 30.0%
CTTTCATATAATGCTACAAG+TGG + chr6.3:35904291-35904310 MS.gene80547:CDS 30.0%
GAAATTACATACAGAAAAGC+AGG - chr6.3:35899256-35899275 None:intergenic 30.0%
GCATTATATGAAAGGTGATT+GGG - chr6.3:35904285-35904304 None:intergenic 30.0%
GTAGGTATGAAGATGTTTAT+TGG + chr6.3:35900115-35900134 MS.gene80547:intron 30.0%
GTTGACTAATGATATGTGAT+AGG + chr6.3:35899930-35899949 MS.gene80547:intron 30.0%
TAATACACGAAACACTAACA+CGG + chr6.3:35901960-35901979 MS.gene80547:intron 30.0%
TAATGATTGAGATGGATGAA+AGG + chr6.3:35900316-35900335 MS.gene80547:intron 30.0%
TAATTAATTACAGGTTAGCG+GGG + chr6.3:35904154-35904173 MS.gene80547:intron 30.0%
TAATTTACCAACACATGTAC+TGG - chr6.3:35901918-35901937 None:intergenic 30.0%
TATAGAGGATCTTACAATGT+TGG + chr6.3:35900189-35900208 MS.gene80547:intron 30.0%
TCAAATAGAAACTATAGAGG+CGG - chr6.3:35902522-35902541 None:intergenic 30.0%
TCTATATCGTGAGATACTTT+AGG - chr6.3:35903952-35903971 None:intergenic 30.0%
TCTCAAATTCAGACTAAAAC+TGG + chr6.3:35901269-35901288 MS.gene80547:CDS 30.0%
TCTGATACCATCTTATAACT+TGG - chr6.3:35900006-35900025 None:intergenic 30.0%
TGGAGATTAAAACCATTCAT+GGG + chr6.3:35903870-35903889 MS.gene80547:intron 30.0%
TTGGAGATTAAAACCATTCA+TGG + chr6.3:35903869-35903888 MS.gene80547:intron 30.0%
TTTAGCCTAAATTGTGTTTC+GGG + chr6.3:35902603-35902622 MS.gene80547:intron 30.0%
! AAAGAGAAGGAAACGAATTT+TGG - chr6.3:35900709-35900728 None:intergenic 30.0%
! ATGTACTGGAACATTCTTTT+CGG - chr6.3:35901904-35901923 None:intergenic 30.0%
! GGAATTTTGTGTATTGCTTA+TGG + chr6.3:35902170-35902189 MS.gene80547:intron 30.0%
! TGTTTCTATTTGAACAGACA+TGG + chr6.3:35899185-35899204 MS.gene80547:intron 30.0%
! TTCCTATAAATTAGCCTGTT+TGG - chr6.3:35899787-35899806 None:intergenic 30.0%
! TTCTAAGAATTTCAAACCAG+AGG + chr6.3:35901012-35901031 MS.gene80547:CDS 30.0%
!! AATCTCATAATGGACTCAAA+GGG - chr6.3:35903975-35903994 None:intergenic 30.0%
!! TAATCTCATAATGGACTCAA+AGG - chr6.3:35903976-35903995 None:intergenic 30.0%
!! TCACTTTTAATCTGAAGTGT+CGG + chr6.3:35902088-35902107 MS.gene80547:intron 30.0%
!! TCTATCGTAGATTTGTTGTT+AGG + chr6.3:35900027-35900046 MS.gene80547:intron 30.0%
!! TTATTACGAAGTCGACTTTT+GGG - chr6.3:35900422-35900441 None:intergenic 30.0%
AAGAATCTGACTTCCATTGT+TGG - chr6.3:35904063-35904082 None:intergenic 35.0%
AAGCTATTTATCAACCCACT+TGG + chr6.3:35901596-35901615 MS.gene80547:intron 35.0%
AAGTTATCCTAGTCAGCTTA+TGG - chr6.3:35901459-35901478 None:intergenic 35.0%
AAGTTTGAAGGATGTGGTAT+TGG + chr6.3:35900385-35900404 MS.gene80547:intron 35.0%
AATCGAGTTACTACATCAGA+AGG + chr6.3:35902357-35902376 MS.gene80547:CDS 35.0%
AATTTAGGCTAAAGCATAGC+GGG - chr6.3:35902596-35902615 None:intergenic 35.0%
AGAAACAAACATCGGAAGAA+AGG - chr6.3:35901136-35901155 None:intergenic 35.0%
AGCAAAATTCAACTCAAACC+TGG - chr6.3:35902708-35902727 None:intergenic 35.0%
AGCTATTTATCAACCCACTT+GGG + chr6.3:35901597-35901616 MS.gene80547:intron 35.0%
AGGTTGCTCTAACAGAAAAT+TGG + chr6.3:35903680-35903699 MS.gene80547:intron 35.0%
AGTTTGAAGGATGTGGTATT+GGG + chr6.3:35900386-35900405 MS.gene80547:intron 35.0%
ATCGAGTTACTACATCAGAA+GGG + chr6.3:35902358-35902377 MS.gene80547:CDS 35.0%
ATTGTTGGAGTCGCATATTT+GGG - chr6.3:35904048-35904067 None:intergenic 35.0%
CAATTTAGGCTAAAGCATAG+CGG - chr6.3:35902597-35902616 None:intergenic 35.0%
CATACCTACTATTGAACATC+TGG - chr6.3:35900104-35900123 None:intergenic 35.0%
CATCAATAGCTATGAAACAC+TGG - chr6.3:35903154-35903173 None:intergenic 35.0%
CCGCTAACCTGTAATTAATT+AGG - chr6.3:35904155-35904174 None:intergenic 35.0%
CTTATCTTAGCACACAACAT+TGG + chr6.3:35900652-35900671 MS.gene80547:intron 35.0%
CTTCGTAATAACCGGTAATA+TGG + chr6.3:35900431-35900450 MS.gene80547:intron 35.0%
GAAAAGAAAGATTCTGTGTG+TGG + chr6.3:35900220-35900239 MS.gene80547:intron 35.0%
GGTTGCTCTAACAGAAAATT+GGG + chr6.3:35903681-35903700 MS.gene80547:intron 35.0%
GTGAAACGTACAAGAACAAA+GGG + chr6.3:35903704-35903723 MS.gene80547:CDS 35.0%
GTGTATTGCTTATGGAGTTA+TGG + chr6.3:35902178-35902197 MS.gene80547:intron 35.0%
GTTGCTCTAACAGAAAATTG+GGG + chr6.3:35903682-35903701 MS.gene80547:CDS 35.0%
TACATACAGAAAAGCAGGTT+TGG - chr6.3:35899251-35899270 None:intergenic 35.0%
TGTGATATACTTGAAATGCC+AGG + chr6.3:35903660-35903679 MS.gene80547:intron 35.0%
TGTTCCAGATGTTCAATAGT+AGG + chr6.3:35900097-35900116 MS.gene80547:intron 35.0%
TTGTATCACTATTCAGTCAC+AGG - chr6.3:35903335-35903354 None:intergenic 35.0%
TTGTGATCTTTCATCTGTCA+CGG + chr6.3:35901851-35901870 MS.gene80547:CDS 35.0%
TTTCTTCCGATGTTTGTTTC+TGG + chr6.3:35901135-35901154 MS.gene80547:intron 35.0%
! AAAGTCGACTTCGTAATAAC+CGG + chr6.3:35900423-35900442 MS.gene80547:intron 35.0%
! AACATTCTTTTCGGAAAACC+TGG - chr6.3:35901895-35901914 None:intergenic 35.0%
! AATTTTCTGTTAGAGCAACC+TGG - chr6.3:35903681-35903700 None:intergenic 35.0%
! ATTCTGAGAGCAGCTTTAAT+GGG + chr6.3:35902939-35902958 MS.gene80547:CDS 35.0%
! ATTTGTGTTTCTGTTTCCTC+TGG - chr6.3:35901031-35901050 None:intergenic 35.0%
! TATTCTGAGAGCAGCTTTAA+TGG + chr6.3:35902938-35902957 MS.gene80547:CDS 35.0%
!! AAACTCTGGAATTGGTTATG+CGG + chr6.3:35901081-35901100 MS.gene80547:CDS 35.0%
!! ATTCTCTTCGGTGTCAATTT+GGG + chr6.3:35901681-35901700 MS.gene80547:intron 35.0%
!! GTTATTACGAAGTCGACTTT+TGG - chr6.3:35900423-35900442 None:intergenic 35.0%
!! TTGGTAGTTACAGTCTTGTT+TGG - chr6.3:35901751-35901770 None:intergenic 35.0%
!!! CAAACTGCTTTTGGTGTTTA+TGG + chr6.3:35899211-35899230 MS.gene80547:CDS 35.0%
AAGATAGACATTTGCACCAC+TGG - chr6.3:35901213-35901232 None:intergenic 40.0%
AAGCCTTAGGAGACTAATTG+AGG + chr6.3:35903427-35903446 MS.gene80547:intron 40.0%
AAGCTTAGAACAAGCGAAGA+AGG + chr6.3:35904177-35904196 MS.gene80547:CDS 40.0%
ACATCATCATCACTCAAGGT+AGG - chr6.3:35900354-35900373 None:intergenic 40.0%
ACCTGTAGATCTTTGGTCAA+GGG - chr6.3:35902842-35902861 None:intergenic 40.0%
ACGTACAAGAACAAAGGGAT+AGG + chr6.3:35903709-35903728 MS.gene80547:CDS 40.0%
ACTACAACCAAAGGAGAAGT+TGG + chr6.3:35904224-35904243 MS.gene80547:CDS 40.0%
AGACTGCTTAGCAGAACATA+TGG + chr6.3:35901388-35901407 MS.gene80547:intron 40.0%
ATAGCTATGAAACACTGGCA+CGG - chr6.3:35903149-35903168 None:intergenic 40.0%
ATATCAAGTCACTTGCTTCC+AGG + chr6.3:35901874-35901893 MS.gene80547:CDS 40.0%
ATGACATCGATGATGTCCAA+TGG + chr6.3:35900253-35900272 MS.gene80547:intron 40.0%
ATTGGACATCATCGATGTCA+TGG - chr6.3:35900254-35900273 None:intergenic 40.0%
ATTTATCAACCCACTTGGGT+TGG + chr6.3:35901601-35901620 MS.gene80547:intron 40.0%
CAAATATGCGACTCCAACAA+TGG + chr6.3:35904047-35904066 MS.gene80547:intron 40.0%
CACACACAGGACTAAATATC+TGG - chr6.3:35900499-35900518 None:intergenic 40.0%
CACAGTTACCTGTAGATCTT+TGG - chr6.3:35902849-35902868 None:intergenic 40.0%
CATTGTTGGAGTCGCATATT+TGG - chr6.3:35904049-35904068 None:intergenic 40.0%
CCCTTCCTACATTTGTAACT+CGG - chr6.3:35903499-35903518 None:intergenic 40.0%
CCGAGTTACAAATGTAGGAA+GGG + chr6.3:35903496-35903515 MS.gene80547:intron 40.0%
CCTTCCTACATTTGTAACTC+GGG - chr6.3:35903498-35903517 None:intergenic 40.0%
CGAGTTACAAATGTAGGAAG+GGG + chr6.3:35903497-35903516 MS.gene80547:intron 40.0%
CGTTTCCCGAAACACAATTT+AGG - chr6.3:35902611-35902630 None:intergenic 40.0%
CTGATTTCCATAAGCTGACT+AGG + chr6.3:35901449-35901468 MS.gene80547:intron 40.0%
CTTCCTACATTTGTAACTCG+GGG - chr6.3:35903497-35903516 None:intergenic 40.0%
CTTGTTTCGAGCATACTGTA+AGG - chr6.3:35902966-35902985 None:intergenic 40.0%
GAAACACGGCCTAAAAGAAT+GGG - chr6.3:35901326-35901345 None:intergenic 40.0%
GAATGTTCCAGTACATGTGT+TGG + chr6.3:35901908-35901927 MS.gene80547:CDS 40.0%
GAGAAGAATTGCATCGTAAC+AGG + chr6.3:35901055-35901074 MS.gene80547:CDS 40.0%
GATATTTAGTCCTGTGTGTG+AGG + chr6.3:35900499-35900518 MS.gene80547:intron 40.0%
GGTGAAACGTACAAGAACAA+AGG + chr6.3:35903703-35903722 MS.gene80547:CDS 40.0%
GTATGTCGTAATAAGGAGAG+AGG + chr6.3:35901233-35901252 MS.gene80547:CDS 40.0%
GTTACGATGCAATTCTTCTC+TGG - chr6.3:35901055-35901074 None:intergenic 40.0%
TAAAGCTGCTCTCAGAATAC+TGG - chr6.3:35902937-35902956 None:intergenic 40.0%
TACCTGTAGATCTTTGGTCA+AGG - chr6.3:35902843-35902862 None:intergenic 40.0%
TCAAGTATTTAGGCTCCGTT+TGG + chr6.3:35899563-35899582 MS.gene80547:intron 40.0%
TCGATCCTTTGCATCTCTTT+AGG + chr6.3:35904350-35904369 MS.gene80547:CDS 40.0%
TCTCACATCATCATCACTCA+AGG - chr6.3:35900358-35900377 None:intergenic 40.0%
TGAAACACGGCCTAAAAGAA+TGG - chr6.3:35901327-35901346 None:intergenic 40.0%
TGAGATTATAATCCCTAGCG+AGG + chr6.3:35903988-35904007 MS.gene80547:intron 40.0%
TGCATCAAGGTTAACAATGC+TGG + chr6.3:35902321-35902340 MS.gene80547:intron 40.0%
TTACGCCATGACTGAATTGA+TGG + chr6.3:35902745-35902764 MS.gene80547:CDS 40.0%
TTACTCAATGCATCCAGGTT+GGG + chr6.3:35903735-35903754 MS.gene80547:CDS 40.0%
TTCCTACATTTGTAACTCGG+GGG - chr6.3:35903496-35903515 None:intergenic 40.0%
TTGTTAGGCAACCTGCTAAT+TGG + chr6.3:35900042-35900061 MS.gene80547:intron 40.0%
TTTACTCAATGCATCCAGGT+TGG + chr6.3:35903734-35903753 MS.gene80547:CDS 40.0%
! AACATCTGGAACATGAAGCT+TGG - chr6.3:35900090-35900109 None:intergenic 40.0%
! AATATCTGGAGCATGAGGTT+TGG - chr6.3:35900485-35900504 None:intergenic 40.0%
! AATCGGATTCTAAGGATGCA+TGG + chr6.3:35900527-35900546 MS.gene80547:intron 40.0%
! ACATGGAGACAAACTGCTTT+TGG + chr6.3:35899202-35899221 MS.gene80547:CDS 40.0%
! GACTAAATATCTGGAGCATG+AGG - chr6.3:35900490-35900509 None:intergenic 40.0%
! GGATTTTACTCAATGCATCC+AGG + chr6.3:35903730-35903749 MS.gene80547:CDS 40.0%
! GTATTGCCACCCATTCTTTT+AGG + chr6.3:35901314-35901333 MS.gene80547:intron 40.0%
! TGAATTGATGGTACCGTTAC+TGG + chr6.3:35902757-35902776 MS.gene80547:CDS 40.0%
! TGGTTAGTGATTTTTGCCAG+TGG + chr6.3:35901194-35901213 MS.gene80547:intron 40.0%
!! ACTTACGATTTTGAGAAGCC+TGG - chr6.3:35903790-35903809 None:intergenic 40.0%
!! AGAGCAGTTTTGTCTGATAG+TGG - chr6.3:35902666-35902685 None:intergenic 40.0%
!! AGAGTTGGTAAATGGTAACG+TGG - chr6.3:35904095-35904114 None:intergenic 40.0%
!! CATGTGACTTTTGTTTCGTG+GGG + chr6.3:35904011-35904030 MS.gene80547:intron 40.0%
!! GATTCTCTTCGGTGTCAATT+TGG + chr6.3:35901680-35901699 MS.gene80547:intron 40.0%
!! GCATGTGACTTTTGTTTCGT+GGG + chr6.3:35904010-35904029 MS.gene80547:intron 40.0%
!! GTGCTGATAGAGTTGGTAAA+TGG - chr6.3:35904103-35904122 None:intergenic 40.0%
!! TGATAGTGGCAAAAGCATAG+CGG - chr6.3:35902652-35902671 None:intergenic 40.0%
AAAAGTCACATGCCTCGCTA+GGG - chr6.3:35904003-35904022 None:intergenic 45.0%
ACATCGATGATGTCCAATGG+TGG + chr6.3:35900256-35900275 MS.gene80547:intron 45.0%
AGACGCTTTCTTCCCATGAA+TGG - chr6.3:35903885-35903904 None:intergenic 45.0%
AGCAGATTAATGACCACGAC+AGG - chr6.3:35902429-35902448 None:intergenic 45.0%
AGGTGGTGAATCGGATTCTA+AGG + chr6.3:35900519-35900538 MS.gene80547:intron 45.0%
ATCGATGATGTCCAATGGTG+GGG + chr6.3:35900258-35900277 MS.gene80547:intron 45.0%
ATCGTAACAGGAGCAAACTC+TGG + chr6.3:35901067-35901086 MS.gene80547:CDS 45.0%
ATTTAGTCCTGTGTGTGAGG+TGG + chr6.3:35900502-35900521 MS.gene80547:intron 45.0%
CAACTCTATCAGCACCATGT+TGG + chr6.3:35904108-35904127 MS.gene80547:intron 45.0%
CATCGATGATGTCCAATGGT+GGG + chr6.3:35900257-35900276 MS.gene80547:intron 45.0%
CCAATAGCTAGATTGTGGGA+GGG - chr6.3:35900557-35900576 None:intergenic 45.0%
CCAGATACCAACTTCTCCTT+TGG - chr6.3:35904234-35904253 None:intergenic 45.0%
CCCGAGTTACAAATGTAGGA+AGG + chr6.3:35903495-35903514 MS.gene80547:intron 45.0%
CCGAATACAACCACATGTGT+CGG + chr6.3:35902033-35902052 MS.gene80547:intron 45.0%
CCGACACATGTGGTTGTATT+CGG - chr6.3:35902036-35902055 None:intergenic 45.0%
CCTCCCACAATCTAGCTATT+GGG + chr6.3:35900555-35900574 MS.gene80547:intron 45.0%
CGGTACCATCAATTCAGTCA+TGG - chr6.3:35902753-35902772 None:intergenic 45.0%
CGTGCTTTCACTCAAAGAGA+AGG - chr6.3:35900722-35900741 None:intergenic 45.0%
CGTGTCATCACAGTTTCTTC+TGG + chr6.3:35902800-35902819 MS.gene80547:CDS 45.0%
CTCCCACAATCTAGCTATTG+GGG + chr6.3:35900556-35900575 MS.gene80547:intron 45.0%
GACCACGACAGGTATAATCA+GGG - chr6.3:35902418-35902437 None:intergenic 45.0%
GACCCCAATAGCTAGATTGT+GGG - chr6.3:35900561-35900580 None:intergenic 45.0%
GCACTACTTCGCCATATTAC+CGG - chr6.3:35900445-35900464 None:intergenic 45.0%
GGAAGGGGTTTAAATTGTGC+AGG + chr6.3:35903512-35903531 MS.gene80547:intron 45.0%
GGTAATATGGCGAAGTAGTG+CGG + chr6.3:35900444-35900463 MS.gene80547:intron 45.0%
GTAACCATCTGTGTCAGTGT+CGG - chr6.3:35903063-35903082 None:intergenic 45.0%
GTAAGTGTCAATACCGTGCT+TGG - chr6.3:35901989-35902008 None:intergenic 45.0%
GTCATCACAGTTTCTTCTGG+TGG + chr6.3:35902803-35902822 MS.gene80547:CDS 45.0%
GTTAAACCAAGCGAAGCCTT+AGG + chr6.3:35903414-35903433 MS.gene80547:intron 45.0%
TAGAACAAGCGAAGAAGGTG+CGG + chr6.3:35904182-35904201 MS.gene80547:CDS 45.0%
TCCCTTGACCAAAGATCTAC+AGG + chr6.3:35902838-35902857 MS.gene80547:CDS 45.0%
TCGTAATAAGGAGAGAGGAG+AGG + chr6.3:35901238-35901257 MS.gene80547:CDS 45.0%
TGACCACGACAGGTATAATC+AGG - chr6.3:35902419-35902438 None:intergenic 45.0%
TGTCAAACACTAACACGTGC+AGG + chr6.3:35902056-35902075 MS.gene80547:intron 45.0%
TGTCGTGGTCATTAATCTGC+TGG + chr6.3:35902428-35902447 MS.gene80547:intron 45.0%
TTCCCCCGAGTTACAAATGT+AGG + chr6.3:35903491-35903510 MS.gene80547:intron 45.0%
TTCCCTGATTATACCTGTCG+TGG + chr6.3:35902413-35902432 MS.gene80547:intron 45.0%
TTGCTTCGCGAAACACGATT+TGG - chr6.3:35902557-35902576 None:intergenic 45.0%
TTGGAGGACGGAACATCTAT+GGG - chr6.3:35900071-35900090 None:intergenic 45.0%
! AGTGTCGGATACTCGGATAA+TGG - chr6.3:35903048-35903067 None:intergenic 45.0%
! ATCTGGAACATGAAGCTTGG+AGG - chr6.3:35900087-35900106 None:intergenic 45.0%
! CAGCCTCAATTAGTCTCCTA+AGG - chr6.3:35903433-35903452 None:intergenic 45.0%
! GATAGTGGCAAAAGCATAGC+GGG - chr6.3:35902651-35902670 None:intergenic 45.0%
! GGCAAACTTTTTGCAACACC+AGG - chr6.3:35903769-35903788 None:intergenic 45.0%
! GGTGTTGCAAAAAGTTTGCC+AGG + chr6.3:35903769-35903788 MS.gene80547:CDS 45.0%
! GTCTCGGGTTAGATTCTCTT+CGG + chr6.3:35901669-35901688 MS.gene80547:intron 45.0%
!! ACAGGAGCAAACTCTGGAAT+TGG + chr6.3:35901073-35901092 MS.gene80547:CDS 45.0%
!! CAACATGGTGCTGATAGAGT+TGG - chr6.3:35904110-35904129 None:intergenic 45.0%
!! CCAAAGGAGAAGTTGGTATC+TGG + chr6.3:35904231-35904250 MS.gene80547:CDS 45.0%
!! GGCATGTGACTTTTGTTTCG+TGG + chr6.3:35904009-35904028 MS.gene80547:intron 45.0%
!! TCTTCGGTGTCAATTTGGGT+GGG + chr6.3:35901685-35901704 MS.gene80547:intron 45.0%
!! TGACTTTTGTTTCGTGGGGA+TGG + chr6.3:35904015-35904034 MS.gene80547:intron 45.0%
!! TATATAAAATAATAATCAAT+AGG - chr6.3:35903844-35903863 None:intergenic 5.0%
AATATGGCGAAGTAGTGCGG+TGG + chr6.3:35900447-35900466 MS.gene80547:intron 50.0%
ACACGGCCTAAAAGAATGGG+TGG - chr6.3:35901323-35901342 None:intergenic 50.0%
ACTGTGATGACACGTGCATC+AGG - chr6.3:35902794-35902813 None:intergenic 50.0%
ATGAAGTACACCCCCACCAT+TGG - chr6.3:35900272-35900291 None:intergenic 50.0%
ATTGGTTATGCGGCAGCTGA+AGG + chr6.3:35901091-35901110 MS.gene80547:CDS 50.0%
CAAAAGTCACATGCCTCGCT+AGG - chr6.3:35904004-35904023 None:intergenic 50.0%
CCCAATAGCTAGATTGTGGG+AGG - chr6.3:35900558-35900577 None:intergenic 50.0%
CCCTCCCACAATCTAGCTAT+TGG + chr6.3:35900554-35900573 MS.gene80547:intron 50.0%
CCCTGGTTTCATGGCGATAA+CGG + chr6.3:35900880-35900899 MS.gene80547:intron 50.0%
CCGTTATCGCCATGAAACCA+GGG - chr6.3:35900883-35900902 None:intergenic 50.0%
CGACCCCAATAGCTAGATTG+TGG - chr6.3:35900562-35900581 None:intergenic 50.0%
CTGGTTGGCACTACAACCAA+AGG + chr6.3:35904215-35904234 MS.gene80547:CDS 50.0%
CTGTGATGACACGTGCATCA+GGG - chr6.3:35902793-35902812 None:intergenic 50.0%
CTGTGTGTGAGGTGGTGAAT+CGG + chr6.3:35900510-35900529 MS.gene80547:intron 50.0%
CTTGGAGGACGGAACATCTA+TGG - chr6.3:35900072-35900091 None:intergenic 50.0%
GGAACATGAAGCTTGGAGGA+CGG - chr6.3:35900083-35900102 None:intergenic 50.0%
GGGGAAGCTTTCTCCAGTAA+CGG - chr6.3:35902773-35902792 None:intergenic 50.0%
GTATCCGACACTGACACAGA+TGG + chr6.3:35903056-35903075 MS.gene80547:intron 50.0%
GTGTTTGACACCGACACATG+TGG - chr6.3:35902046-35902065 None:intergenic 50.0%
GTTGGAGTCGCATATTTGGG+AGG - chr6.3:35904045-35904064 None:intergenic 50.0%
TAGTCTCCTAAGGCTTCGCT+TGG - chr6.3:35903423-35903442 None:intergenic 50.0%
TCGATGATGTCCAATGGTGG+GGG + chr6.3:35900259-35900278 MS.gene80547:intron 50.0%
TGCTCGAAACAAGCGTGTTC+AGG + chr6.3:35902973-35902992 MS.gene80547:CDS 50.0%
TGTGACTGACCCTGGTTTCA+TGG + chr6.3:35900871-35900890 MS.gene80547:intron 50.0%
TGTGATGACACGTGCATCAG+GGG - chr6.3:35902792-35902811 None:intergenic 50.0%
! CTGTGTCAGTGTCGGATACT+CGG - chr6.3:35903055-35903074 None:intergenic 50.0%
!! CTCTTCGGTGTCAATTTGGG+TGG + chr6.3:35901684-35901703 MS.gene80547:intron 50.0%
!! GAAGTCGACTTTTGGGCTTG+CGG - chr6.3:35900415-35900434 None:intergenic 50.0%
!! TGGCCTGATGGTATTGGCTT+GGG + chr6.3:35901621-35901640 MS.gene80547:intron 50.0%
!! TTGGCCTGATGGTATTGGCT+TGG + chr6.3:35901620-35901639 MS.gene80547:intron 50.0%
!! TTGGGTTGGCCTGATGGTAT+TGG + chr6.3:35901615-35901634 MS.gene80547:intron 50.0%
AAGGTGCGGACACGGTTATC+TGG + chr6.3:35904196-35904215 MS.gene80547:CDS 55.0%
ACCATCAGGCCAACCCAAGT+GGG - chr6.3:35901613-35901632 None:intergenic 55.0%
ACTAACACGGACGCCAAGCA+CGG + chr6.3:35901973-35901992 MS.gene80547:intron 55.0%
CAGCTGAAGGACTTGCACAG+CGG + chr6.3:35901104-35901123 MS.gene80547:CDS 55.0%
CGATTCACCACCTCACACAC+AGG - chr6.3:35900512-35900531 None:intergenic 55.0%
GAATCTAACCCGAGACCTCG+AGG - chr6.3:35901665-35901684 None:intergenic 55.0%
GAGGACGGAACATCTATGGG+CGG - chr6.3:35900068-35900087 None:intergenic 55.0%
GCCGTTATCGCCATGAAACC+AGG - chr6.3:35900884-35900903 None:intergenic 55.0%
GGTCCCAAGCCAATACCATC+AGG - chr6.3:35901627-35901646 None:intergenic 55.0%
GTAACTCGGGGGAATCTTCG+AGG - chr6.3:35903485-35903504 None:intergenic 55.0%
TACCATCAGGCCAACCCAAG+TGG - chr6.3:35901614-35901633 None:intergenic 55.0%
TCTATGGGCGGCCAATTAGC+AGG - chr6.3:35900056-35900075 None:intergenic 55.0%
TGCGGACACGGTTATCTGGT+TGG + chr6.3:35904200-35904219 MS.gene80547:CDS 55.0%
TTGGTGTGTGTGACTGACCC+TGG + chr6.3:35900863-35900882 MS.gene80547:intron 55.0%
! AAGCGAAGAAGGTGCGGACA+CGG + chr6.3:35904188-35904207 MS.gene80547:CDS 55.0%
! TAAGAGTGTGCTCCTCCTCG+AGG + chr6.3:35901647-35901666 MS.gene80547:intron 55.0%
! TCGAGGAGGAGCACACTCTT+AGG - chr6.3:35901648-35901667 None:intergenic 55.0%
TCTAACCCGAGACCTCGAGG+AGG - chr6.3:35901662-35901681 None:intergenic 60.0%
TGTGCTCCTCCTCGAGGTCT+CGG + chr6.3:35901653-35901672 MS.gene80547:intron 60.0%
!! ACCCACTTGGGTTGGCCTGA+TGG + chr6.3:35901609-35901628 MS.gene80547:intron 60.0%
GTGCTCCTCCTCGAGGTCTC+GGG + chr6.3:35901654-35901673 MS.gene80547:intron 65.0%
! CCAGGTTGGGCTGACACTCC+TGG + chr6.3:35903748-35903767 MS.gene80547:CDS 65.0%
!! CCAGGAGTGTCAGCCCAACC+TGG - chr6.3:35903751-35903770 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 35899087 35904371 35899087 ID=MS.gene80547
chr6.3 mRNA 35899087 35904371 35899087 ID=MS.gene80547.t1;Parent=MS.gene80547
chr6.3 exon 35899087 35899101 35899087 ID=MS.gene80547.t1.exon1;Parent=MS.gene80547.t1
chr6.3 CDS 35899087 35899101 35899087 ID=cds.MS.gene80547.t1;Parent=MS.gene80547.t1
chr6.3 exon 35899202 35899263 35899202 ID=MS.gene80547.t1.exon2;Parent=MS.gene80547.t1
chr6.3 CDS 35899202 35899263 35899202 ID=cds.MS.gene80547.t1;Parent=MS.gene80547.t1
chr6.3 exon 35901006 35901125 35901006 ID=MS.gene80547.t1.exon3;Parent=MS.gene80547.t1
chr6.3 CDS 35901006 35901125 35901006 ID=cds.MS.gene80547.t1;Parent=MS.gene80547.t1
chr6.3 exon 35901214 35901313 35901214 ID=MS.gene80547.t1.exon4;Parent=MS.gene80547.t1
chr6.3 CDS 35901214 35901313 35901214 ID=cds.MS.gene80547.t1;Parent=MS.gene80547.t1
chr6.3 exon 35901849 35901929 35901849 ID=MS.gene80547.t1.exon5;Parent=MS.gene80547.t1
chr6.3 CDS 35901849 35901929 35901849 ID=cds.MS.gene80547.t1;Parent=MS.gene80547.t1
chr6.3 exon 35902330 35902379 35902330 ID=MS.gene80547.t1.exon6;Parent=MS.gene80547.t1
chr6.3 CDS 35902330 35902379 35902330 ID=cds.MS.gene80547.t1;Parent=MS.gene80547.t1
chr6.3 exon 35902709 35902859 35902709 ID=MS.gene80547.t1.exon7;Parent=MS.gene80547.t1
chr6.3 CDS 35902709 35902859 35902709 ID=cds.MS.gene80547.t1;Parent=MS.gene80547.t1
chr6.3 exon 35902938 35902994 35902938 ID=MS.gene80547.t1.exon8;Parent=MS.gene80547.t1
chr6.3 CDS 35902938 35902994 35902938 ID=cds.MS.gene80547.t1;Parent=MS.gene80547.t1
chr6.3 exon 35903682 35903803 35903682 ID=MS.gene80547.t1.exon9;Parent=MS.gene80547.t1
chr6.3 CDS 35903682 35903803 35903682 ID=cds.MS.gene80547.t1;Parent=MS.gene80547.t1
chr6.3 exon 35904167 35904371 35904167 ID=MS.gene80547.t1.exon10;Parent=MS.gene80547.t1
chr6.3 CDS 35904167 35904371 35904167 ID=cds.MS.gene80547.t1;Parent=MS.gene80547.t1
Gene Sequence

>MS.gene80547

ATGTTTCTTATCAAGGTTCTTGTTTTTCTCTCTTCCTTAATTTCACATTTCATTAAACATTATTTGTTTCATGCAAATTGGTTTAATGTTAAATTGTTTGTTTCTATTTGAACAGACATGGAGACAAACTGCTTTTGGTGTTTATGGTTATATGAATTTCACCAAACCTGCTTTTCTGTATGTAATTTCTTCTTTCTTTTTCCATTTTTAATCATTTATTAGTTCCTAAAAGATATATAATGATGATCATATTAACAAATAATTATTGATATTAAGTTCAAAATCATTGAATTTCTTAAGTCAGGTGTAATATGAATTTAGCACATTAATTTATAGGACAAAAATATCAATTTAGGATAATTCAGATGATTATAGGTACAGATGTAATATGAATTTAGCACATTAGTTTAGGTGTAATATGAATTTAGCGATAAAAAAGCGGATAATTCAGATGATTATAGGTACTAAAAACATAATCAAGTATTTAGGCTCCGTTTGGTTTGAACTTATTTTGAGCTTATGAAAAAGAGCTTATGCAAATAAATAAATTTTTATCTTAATTTATAAGTTCTTACTAACGAAAATCGTACCTTCATAAGTTGTTTTTTCATAAACTACATTAACACGCTTATAAATAATACATAAAGACATATTTATTTGTATAAGTTGTTTTGCTTAAGCTCTAAAATAAGCTAATCCAAACAGGCTAATTTATAGGAACTTTATCATAATTGTAAAATTATGATATTTTGTTATCTTTTCTATTGTTTTGCTGCTTAATTATACTATTCGTAGTCCTAGTATTATGATTATGAAAATAATTATTGTTATTGGAGATCCTATGTTGACTAATGATATGTGATAGGACAAAAATAGTTGCTATAAGTTGGATATAACTCTTATGTTTTGCTTAAACCCAAGTTATAAGATGGTATCAGAGTCTATCGTAGATTTGTTGTTAGGCAACCTGCTAATTGGCCGCCCATAGATGTTCCGTCCTCCAAGCTTCATGTTCCAGATGTTCAATAGTAGGTATGAAGATGTTTATTGGAGATTTCACATTGACTAGTGTTGAGAACAAACTCAGATTATGCAACAAATATATAGAGGATCTTACAATGTTGGTAGATTGAGAAAAGAAAGATTCTGTGTGTGGTTGTGAATCCATGACATCGATGATGTCCAATGGTGGGGGTGTACTTCATTGCACTCCAATGCTCAAGTTAGTATAATGATTGAGATGGATGAAAGGTTTAAAATGAGACCTACCTTGAGTGATGATGATGTGAGACTTTTATAAGTTTGAAGGATGTGGTATTGGGATTCCGCAAGCCCAAAAGTCGACTTCGTAATAACCGGTAATATGGCGAAGTAGTGCGGTGGTAAATCGAATTTCCAAACCTCATGCTCCAGATATTTAGTCCTGTGTGTGAGGTGGTGAATCGGATTCTAAGGATGCATGGACAACCCTCCCACAATCTAGCTATTGGGGTCGAGTTAAGCTGAAATCCAAATTCTAAGAATTATTATGAACTGAGTTATAGTTTTTCCTCAAAGTCTTAATGCTTATCTTAGCACACAACATTGGTCTTGCTTATATATGTAGATGCAAAACAAGTCCAAAATTCGTTTCCTTCTCTTTGAGTGAAAGCACGTTTATTTTGTTAGTTTGATTAGTTTTTCCAGTATTAACATTTACTATGTTGAAACAATCATTTTGAACTAATATTGTCCGTTTCATTTATTTTTGAATGTTGAATAGCTTACAAGATCGAATTGGTGTGTGTGACTGACCCTGGTTTCATGGCGATAACGGCTACTTATTGTGTTTATAATCTGTACAGTTTATTGAAAAGTAGAATGTAGTAAAGTTGTAGTTTTCTGTCAATAGCTTATGCATAAAATTTTAACTATCACAGTGAGCATTCTAAGAATTTCAAACCAGAGGAAACAGAAACACAAATACCAGAGAAGAATTGCATCGTAACAGGAGCAAACTCTGGAATTGGTTATGCGGCAGCTGAAGGACTTGCACAGCGGTTTTGACCTTTCTTCCGATGTTTGTTTCTGGAATTTTTATTTCAGTATTTAGTTATATGCTAATCTGTGGTTAGTGATTTTTGCCAGTGGTGCAAATGTCTATCTTGTATGTCGTAATAAGGAGAGAGGAGAGGCTGCTCTTTCTCAAATTCAGACTAAAACTGGCAATCAAAATGTGTATTTAGAGGTATTGCCACCCATTCTTTTAGGCCGTGTTTCAATTGACTTACTTTAGCTTATCTGTTGACATAATCATTTGTGAGACTGCTTAGCAGAACATATGGAAATAACTTACTATAACATATTCATAAATTGTTTTCAGCTGATTTCCATAAGCTGACTAGGATAACTTATGAAAACAACTTATAGCTTGTATCAAAAACGTTTGACTTCATTTTATCTTTTGTTATAAAATAGGTTATACAAAAGCACTTTTAATGATAGACATTTATCCTACAAGTAATCAATTAAGCTATTTATCAACCCACTTGGGTTGGCCTGATGGTATTGGCTTGGGACCTAAGAGTGTGCTCCTCCTCGAGGTCTCGGGTTAGATTCTCTTCGGTGTCAATTTGGGTGGGCTAATTTAGCTTCTTCAAAAAAAGAAATTAAGCTATTTATCCAAACAAGACTGTAACTACCAAAAGCATATTAGACTTTTTAAATTTCATGTATTGAACATAAATTTTATGTCATTGTGATCTAGCTAATTTTTCTTGCAGATTTGTGATCTTTCATCTGTCACGGATATCAAGTCACTTGCTTCCAGGTTTTCCGAAAAGAATGTTCCAGTACATGTGTTGGTAAATTATTAATCATATTGCGAGATGATATAATACACGAAACACTAACACGGACGCCAAGCACGGTATTGACACTTACACGTCGACACCAAAAATGAAATATCCGAATACAACCACATGTGTCGGTGTCAAACACTAACACGTGCAGGAAAACAAACTCACTTTTAATCTGAAGTGTCGGAGCTACAGTACTTCGCTGCATGATTGAAATTGCCGATAAGTTTAATATAAAAACTTACGGGAATTTTGTGTATTGCTTATGGAGTTATGGATACCATTTTATTTCAAGAAAAGAACAACTATTACATATTTTTTGCAAAACAGATTTAACTGCTGATCTGATGATTTTAGCCAATTTATTCTTTTGAAAATCTAATATGAAACAATTTATTGCATCAAGGTTAACAATGCTGGCTTGCTTGAGCAAAATCGAGTTACTACATCAGAAGGGTGAGTCTTTTGTTTAATGTAGAAATTAGTTTTTTCCCTGATTATACCTGTCGTGGTCATTAATCTGCTGGCGTCTTATAATAAGTGTTCTCAATTGCATATCACGACAAATAGTTTGTTCAATTTCTGCTATGCTATACCGCCTCTATAGTTTCTATTTGAAAACACTCTATACCAAATCGTGTTTCGCGAAGCAATAGCACTTGTTCAAATCCCGCTATGCTTTAGCCTAAATTGTGTTTCGGGAAACGATAACACTTGTTTAAATCCCGCTATGCTTTTGCCACTATCAGACAAAACTGCTCTTAAGTTTATCTATTCTTTTCCAGGTTTGAGTTGAATTTTGCTGTCAATGTATTAGGCACTTACGCCATGACTGAATTGATGGTACCGTTACTGGAGAAAGCTTCCCCTGATGCACGTGTCATCACAGTTTCTTCTGGTGGAATGTATAGTACTCCCTTGACCAAAGATCTACAGGTAACTGTGATATGAGCGTTTCAGCTATTTCAATCATTTATAGGATTTCAGTATAATTTATACTTTTTTCTGTACCAGTATTCTGAGAGCAGCTTTAATGGGACCTTACAGTATGCTCGAAACAAGCGTGTTCAGGTCAGTTATGTTGATCAACTTAGTACTGATATTTTAAATTCAAGGCGTGTCCATTATCCGAGTATCCGACACTGACACAGATGGTTACAGTCAAATATTCTGTTTTCTCAAATTATGTTGACGTGTCAAGTATCAAGTCTGATGTCAATGTCCGTGCCAGTGTTTCATAGCTATTGATGACTGTTAGAATACAGTTTTTTTTCTTCTCTTGTATTGTTGAACAATTAACAAAAAAATCGCATTGTAGTGGTGACAAATATGTTTTTTGTTAGCGATACCATAATGACTAATGTTGTCAATGACAATGTTGTCAACATACACAAACAAGTATGTATAACCTGTGACTGAATAGTGATACAATATCGAGCAATCTGACTCACTTTGAGTCGTGTGAAATTGCTGAACAACATTGTTAAGCTGTTAAACCAAGCGAAGCCTTAGGAGACTAATTGAGGCTGTATATAGATTTGCAAAGACGAAAAAATAGCCTCGAAGATTCCCCCGAGTTACAAATGTAGGAAGGGGTTTAAATTGTGCAGGCTTATCAAATCTTTGCATTCATATATTTGAGAATCCTTATTTCTTGAATAGAGGTTAGGACGCAATTTAAAGAGATTACTGAAGTGATTTCTTTTTTATTATATTTTTTGTATTTATGCAAGTTTTGTGATATACTTGAAATGCCAGGTTGCTCTAACAGAAAATTGGGGTGAAACGTACAAGAACAAAGGGATAGGATTTTACTCAATGCATCCAGGTTGGGCTGACACTCCTGGTGTTGCAAAAAGTTTGCCAGGCTTCTCAAAATCGTAAGTAATGCTTGTCCTTAAAATCATCCATAGAAAACCTATTGATTATTATTTTATATAAAATATTGGAGATTAAAACCATTCATGGGAAGAAAGCGTCTAATGATCAAGTTGTGTCGACTCTTGCATTGCACTTTTTTTGTACCCTAAAGTATCTCACGATATAGACCCTTTGAGTCCATTATGAGATTATAATCCCTAGCGAGGCATGTGACTTTTGTTTCGTGGGGATGGTCTACCTCCCAAATATGCGACTCCAACAATGGAAGTCAGATTCTTAGAGAAGAGCCACGTTACCATTTACCAACTCTATCAGCACCATGTTGGTAGTCCTAATTAATATACTGACCTAATTAATTACAGGTTAGCGGGGAAGCTTAGAACAAGCGAAGAAGGTGCGGACACGGTTATCTGGTTGGCACTACAACCAAAGGAGAAGTTGGTATCTGGTGCATTTTATTTTGATAGAGCTGAAGCTCCCAATCACCTTTCATATAATGCTACAAGTGGTTCTCATACTGTGATCAACTCTGTCATTGATAGTCTTCGATCCTTTGCATCTCTTTAG

Protein sequence

>MS.gene80547.t1

MFLIKTWRQTAFGVYGYMNFTKPAFLEHSKNFKPEETETQIPEKNCIVTGANSGIGYAAAEGLAQRGANVYLVCRNKERGEAALSQIQTKTGNQNVYLEICDLSSVTDIKSLASRFSEKNVPVHVLVNNAGLLEQNRVTTSEGFELNFAVNVLGTYAMTELMVPLLEKASPDARVITVSSGGMYSTPLTKDLQYSESSFNGTLQYARNKRVQVALTENWGETYKNKGIGFYSMHPGWADTPGVAKSLPGFSKSLAGKLRTSEEGADTVIWLALQPKEKLVSGAFYFDRAEAPNHLSYNATSGSHTVINSVIDSLRSFASL