AlfalfaGEDB | MS.gene039174

M. sativa cultivar XinJiangDaYe / MS.gene039174

KEGG: K00799
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00043.28 PF02798.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039174.t1	AIP98335.1	95	219	11	0	1	219	1	219	6.50E-118	433.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039174.t1	Q03666	69.7	218	65	1	3	219	4	221	2.1e-88	326.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039174.t1	A0A089GJT0	95.0	219	11	0	1	219	1	219	4.7e-118	433.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene005621	MS.gene039174	PPI
MS.gene012776	MS.gene039174	PPI
MS.gene012777	MS.gene039174	PPI
MS.gene03034	MS.gene039174	PPI
MS.gene039174	MS.gene039178	PPI
MS.gene039174	MS.gene07192	PPI
MS.gene039174	MS.gene039177	PPI
MS.gene039174	MS.gene039179	PPI
MS.gene039174	MS.gene068679	PPI
MS.gene039175	MS.gene039174	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039174.t1	MTR_2g070130	93.607	219	14	0	1	219	1	219	2.34e-152	422
MS.gene039174.t1	MTR_2g070150	85.784	204	29	0	1	204	1	204	1.95e-132	370
MS.gene039174.t1	MTR_2g070180	81.308	214	40	0	1	214	1	214	2.78e-131	368
MS.gene039174.t1	MTR_2g070140	81.773	203	37	0	17	219	1	203	5.84e-127	357
MS.gene039174.t1	MTR_2g070210	70.136	221	64	1	1	219	1	221	1.45e-116	331
MS.gene039174.t1	MTR_2g070200	68.326	221	68	2	1	219	1	221	3.05e-110	315
MS.gene039174.t1	MTR_2g070060	60.731	219	86	0	1	219	1	219	2.68e-101	292
MS.gene039174.t1	MTR_2g070070	61.187	219	85	0	1	219	1	219	9.92e-100	288
MS.gene039174.t1	MTR_3g467420	61.860	215	82	0	5	219	10	224	1.67e-99	288
MS.gene039174.t1	MTR_8g056940	61.111	216	84	0	1	216	1	216	3.76e-96	280

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039174.t1	AT1G17180	64.840	219	77	0	1	219	1	219	1.45e-106	306
MS.gene039174.t1	AT1G78380	64.352	216	77	0	1	216	1	216	2.46e-104	300
MS.gene039174.t1	AT1G78340	63.426	216	79	0	1	216	1	216	6.82e-102	294
MS.gene039174.t1	AT1G78360	62.727	220	81	1	1	219	1	220	6.24e-101	291
MS.gene039174.t1	AT1G78370	63.084	214	79	0	1	214	1	214	1.03e-100	291
MS.gene039174.t1	AT1G78320	65.854	205	70	0	1	205	1	205	3.88e-100	290
MS.gene039174.t1	AT1G17170	61.644	219	83	1	1	219	1	218	1.31e-98	286
MS.gene039174.t1	AT1G17190	57.209	215	92	0	3	217	4	218	6.75e-94	274
MS.gene039174.t1	AT1G53680	54.378	217	97	2	5	219	8	224	3.69e-86	254
MS.gene039174.t1	AT3G43800	55.455	220	94	3	3	218	4	223	1.00e-81	243

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Find 48 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGCCCTAGCTGAAAA+GGG	0.509162	2.1:+28437274	MS.gene039174:CDS
AAACTCTTGGAGCAAGAGTT+GGG	0.491382	2.1:+28439397	MS.gene039174:CDS
AAATAGATCTATGAAGTTGC+AGG	0.398837	2.1:+28439310	MS.gene039174:intron
AAGTGATTCTGCTTAATTAC+TGG	0.295778	2.1:+28437227	MS.gene039174:CDS
AATAGATCTATGAAGTTGCA+GGG	0.596469	2.1:+28439311	MS.gene039174:intron
AATTACTGGCCAAGTCCTTT+TGG	0.329731	2.1:+28437241	MS.gene039174:CDS
ACTCTTGCTCCAAGAGTTTG+AGG	0.435255	2.1:-28439393	None:intergenic
AGAAAGCACAAGCTAGATTC+TGG	0.400529	2.1:+28437488	MS.gene039174:CDS
AGAGCAAGAAGCTGCAAAGA+AGG	0.498696	2.1:+28439357	MS.gene039174:CDS
AGTCTCATGCCAAAAGGACT+TGG	0.442560	2.1:-28437250	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGATCTATGAAGTTGC+AGG	+	chr2.1:28439310-28439329	MS.gene039174:intron	30.0%
AAGTGATTCTGCTTAATTAC+TGG	+	chr2.1:28437227-28437246	MS.gene039174:CDS	30.0%
AATAGATCTATGAAGTTGCA+GGG	+	chr2.1:28439311-28439330	MS.gene039174:intron	30.0%
ATACACAAAAAACCTAAGCT+CGG	+	chr2.1:28438464-28438483	MS.gene039174:intron	30.0%
ATCCCTGTTCTTATTCATAA+TGG	+	chr2.1:28437376-28437395	MS.gene039174:CDS	30.0%
CAAAGGCTTAAATATGGTAT+TGG	+	chr2.1:28437724-28437743	MS.gene039174:intron	30.0%
CCTCTAAACCAATTGTATAA+TGG	-	chr2.1:28439478-28439497	None:intergenic	30.0%
GGCTGATTATATTGATAAGA+AGG	+	chr2.1:28437510-28437529	MS.gene039174:CDS	30.0%
GGTTCATTTGTAACAACAAA+GGG	-	chr2.1:28437342-28437361	None:intergenic	30.0%
TAAGATCCATGATTTGATTG+TGG	+	chr2.1:28439609-28439628	MS.gene039174:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	28437217	28439660	28437217	ID=MS.gene039174
chr2.1	mRNA	28437217	28439660	28437217	ID=MS.gene039174.t1;Parent=MS.gene039174
chr2.1	exon	28437217	28437531	28437217	ID=MS.gene039174.t1.exon1;Parent=MS.gene039174.t1
chr2.1	CDS	28437217	28437531	28437217	ID=cds.MS.gene039174.t1;Parent=MS.gene039174.t1
chr2.1	exon	28439316	28439660	28439316	ID=MS.gene039174.t1.exon2;Parent=MS.gene039174.t1
chr2.1	CDS	28439316	28439660	28439316	ID=cds.MS.gene039174.t1;Parent=MS.gene039174.t1

Gene Sequence

>MS.gene039174

ATGGCTGATGAAGTGATTCTGCTTAATTACTGGCCAAGTCCTTTTGGCATGAGACTCAAAATAGCCCTAGCTGAAAAGGGTATCAAGCATGAGTACAGAGAAGAAGACTTAAGCAACAAAAGCCCTTTGTTGTTACAAATGAACCCTGTTCATAAGAAAATCCCTGTTCTTATTCATAATGGAAAACCAATTTGTGAATCTTTAATTGCTGTTCAGTATATTGATGAAGTTTGGAATGATAAATCTCCTTTGTTACCTTCTGATCCTTATCAGAAAGCACAAGCTAGATTCTGGGCTGATTATATTGATAAGAAGGTAAGATGTATTTCAAAACAAGCTTAATTTTTGAATCAACATTTTGTGTGCAATAATTTCTGAAAAGTTTAGACATTGGCTTTCTGTTCAACTTAATATGATGATTTATTGTGTATCTAAGTTAAGAATTTTTGAGATAATTCATATTGGGAGCACCCATTTGATATTTTTAGCATGCATAATCATTATTAGCAAAGGCTTAAATATGGTATTGGTCCCTGCAAAATAGGCCAGTTTTGGTTTTAGTCCCTGCAATTTTTTTTTATAGTTTTTGGTCCTTGCAAAATAGGCCAGTTTTGGTTTTAGTCCCTGCAAATTTTTTTTATAGTTTTTGATCCCTGCAAATATAGGCCAGTTTTGGTTTTAGTCCCTGCAAATTTTTTTTTATATAGTTTTTGGTCCCTACAAAAATTCTGGAAAAATGAAAAATTAATAAAAAAATAAAAAAAATATTAAAAAATTCTGGAAAATTGAAAAATTAATAAAAAAATATTAAAAAATTCTGGAAAAATGAAAAATTAATTAAAAAATTGAAAAAAATATTAAAAAATTCTGGAAAAACGAAAAATTAATAAAAAATTGAAAAAAATATTTAAAAATTCTAAAAAATTAAAAATTCTGGAAAAATTAATAAAAATAAAAAACGATTAAAAAAATAAAATAATCTAATAAAATGAAAAATAATGCTAAATTCTGAAAAAAAAATAAAAAAGATTAAAAAATTCTGAAAAAATAAAATTTTGAAATTTTCTAAAAAAAATTAAAATTCTAAAAAAATTAAATTTTCGAAATTTTAATGAAAAATTTTAGTTCAAATTTTCAAAATTTTAATAAAAATTCTGGAAAAATTCTAAATACACAAAAGTTCCCGGTTTATAAATACACAAAAATTCTTGGAAAAAATACTAATGAAAATTTCGAAATTTCGAAAAATACACAAAAAACCTAAGCTCGGTTTATAAATACACATATTTTTTCCCTTATTCTCGGTTTATAAATACGCAAAATTCCCGGAAATTTTTTTGGAAATAAATACACTGAAAAAACTTAAGCTCGACATATATACTAATGAAATTTTCCAGAATTTTTATTAAAATTTCCAAAATTTCATTTTTCCAGAATTTTAATTTTTTTCAGAAAATTTCGAAATTTTATTTTTTCAGAATTTTTTAATCTTTTTTATTTTTTCTGAATTTATCATTATTTTTCATTTTATTAGATTATTTTATTTTTTAATCATTTTTTATTTTTATTAATTTTTCCAGAATTTTTAAATTTTTTCCTTATTTTTTTTCTAATTTTTTTTCATTTTTATTAATTTTTCAATTTTCCAAAATTTTTTAATATTTTTTTTCAATTTTTTTATTAGTTTTTCATTTTTCCAGATTTTTTTAATATTTTTTTAATTTTTTATTAACTTTTCAATTTTTCAGAATTTTTTAATATTTTTTTCAATTTTTTATTAATTTTTCATTTTTTCCAGAATTTTTTTATTTTCCCAGAATTTTTTAATTTTTTTTTATATTTTTTTATTATATAACTGGGGTCAGGGACTATTTCCAAAAACAAAAATTTTGCAGGGACTAAAACCAAAACTGGTCCATTTTTGTAGGGACCAAAAACTATAAAAAAAATTTGCAGGGACTAAAACCAAAACTGGCCTATTTTGCAGGGACCAATACCATATTTAAGCCTATTAGCAAATAACATGATACTTTTTGTTTTTCATGTTCTTGCATGTTATGATCTAATAAATCAGTGTGTGTGAATTCTCTGTCAAATAGATCTATGAAGTTGCAGGGAACAATTGGACCAAAAAAGAAGAAGAGCAAGAAGCTGCAAAGAAGGAATTCATAGAAGCCCTCAAACTCTTGGAGCAAGAGTTGGGAGACAAGAATTTTTTTGGAGGAGACAAGCTTGGTTTTGTTGATGTAGCATTTATTCCATTATACAATTGGTTTAGAGGCTATGAGGCCTTTGGCAAGATCAGTGTAGACAAGGAGTGCCCTAAGTTCAGTGCTTGGGCCAATAGATGCATGCAGATTGAAAGTGTTTCCAAGTCACTCCCTGATCAGGATAAGATCCATGATTTGATTGTGGAGCTCAAGAAGAAGTATGGCTTTGAGTAG

Protein sequence

>MS.gene039174.t1

MADEVILLNYWPSPFGMRLKIALAEKGIKHEYREEDLSNKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQYIDEVWNDKSPLLPSDPYQKAQARFWADYIDKKIYEVAGNNWTKKEEEQEAAKKEFIEALKLLEQELGDKNFFGGDKLGFVDVAFIPLYNWFRGYEAFGKISVDKECPKFSAWANRCMQIESVSKSLPDQDKIHDLIVELKKKYGFE