Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30529.t1 | XP_013464346.1 | 92.2 | 219 | 17 | 0 | 1 | 219 | 1 | 219 | 2.80E-116 | 427.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30529.t1 | Q03666 | 67.9 | 218 | 69 | 1 | 3 | 219 | 4 | 221 | 6.7e-87 | 321.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30529.t1 | I3T074 | 92.2 | 219 | 17 | 0 | 1 | 219 | 1 | 219 | 2.0e-116 | 427.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30529.t1 | MTR_2g070130 | 92.237 | 219 | 17 | 0 | 1 | 219 | 1 | 219 | 5.56e-152 | 421 |
MS.gene30529.t1 | MTR_2g070150 | 85.784 | 204 | 29 | 0 | 1 | 204 | 1 | 204 | 8.87e-132 | 369 |
MS.gene30529.t1 | MTR_2g070180 | 80.841 | 214 | 41 | 0 | 1 | 214 | 1 | 214 | 4.07e-130 | 365 |
MS.gene30529.t1 | MTR_2g070140 | 81.281 | 203 | 38 | 0 | 17 | 219 | 1 | 203 | 1.01e-125 | 353 |
MS.gene30529.t1 | MTR_2g070210 | 70.136 | 221 | 64 | 1 | 1 | 219 | 1 | 221 | 2.25e-118 | 336 |
MS.gene30529.t1 | MTR_2g070200 | 67.421 | 221 | 70 | 2 | 1 | 219 | 1 | 221 | 2.85e-109 | 313 |
MS.gene30529.t1 | MTR_2g070060 | 60.274 | 219 | 87 | 0 | 1 | 219 | 1 | 219 | 9.22e-101 | 291 |
MS.gene30529.t1 | MTR_3g467420 | 60.930 | 215 | 84 | 0 | 5 | 219 | 10 | 224 | 2.97e-98 | 285 |
MS.gene30529.t1 | MTR_2g070070 | 60.274 | 219 | 87 | 0 | 1 | 219 | 1 | 219 | 1.21e-97 | 283 |
MS.gene30529.t1 | MTR_8g056940 | 60.185 | 216 | 86 | 0 | 1 | 216 | 1 | 216 | 6.54e-95 | 276 |
MS.gene30529.t1 | MTR_2g070120 | 62.439 | 205 | 77 | 0 | 1 | 205 | 1 | 205 | 1.33e-94 | 275 |
MS.gene30529.t1 | MTR_3g467430 | 58.525 | 217 | 90 | 0 | 3 | 219 | 8 | 224 | 3.87e-94 | 275 |
MS.gene30529.t1 | MTR_2g070110 | 58.904 | 219 | 89 | 1 | 1 | 219 | 1 | 218 | 7.18e-92 | 268 |
MS.gene30529.t1 | MTR_4g124130 | 56.818 | 220 | 94 | 1 | 1 | 219 | 1 | 220 | 9.81e-89 | 261 |
MS.gene30529.t1 | MTR_5g076900 | 47.945 | 219 | 112 | 2 | 2 | 219 | 4 | 221 | 4.30e-73 | 221 |
MS.gene30529.t1 | MTR_0186s0030 | 68.085 | 141 | 45 | 0 | 1 | 141 | 1 | 141 | 3.40e-66 | 201 |
MS.gene30529.t1 | MTR_1g090060 | 43.689 | 206 | 111 | 3 | 4 | 205 | 3 | 207 | 1.15e-53 | 172 |
MS.gene30529.t1 | MTR_8g087425 | 42.718 | 206 | 115 | 2 | 2 | 205 | 3 | 207 | 6.68e-51 | 165 |
MS.gene30529.t1 | MTR_7g065720 | 43.128 | 211 | 106 | 5 | 3 | 205 | 6 | 210 | 7.42e-51 | 164 |
MS.gene30529.t1 | MTR_7g065750 | 43.694 | 222 | 108 | 6 | 3 | 216 | 6 | 218 | 2.44e-50 | 163 |
MS.gene30529.t1 | MTR_4g019780 | 42.927 | 205 | 114 | 2 | 3 | 205 | 7 | 210 | 5.85e-50 | 162 |
MS.gene30529.t1 | MTR_5g040430 | 37.668 | 223 | 129 | 3 | 2 | 217 | 5 | 224 | 1.10e-49 | 162 |
MS.gene30529.t1 | MTR_8g087410 | 42.308 | 208 | 109 | 3 | 4 | 205 | 6 | 208 | 1.38e-49 | 161 |
MS.gene30529.t1 | MTR_4g059730 | 42.654 | 211 | 112 | 6 | 1 | 205 | 1 | 208 | 1.96e-49 | 160 |
MS.gene30529.t1 | MTR_7g065630 | 42.439 | 205 | 109 | 5 | 3 | 204 | 24 | 222 | 1.80e-48 | 159 |
MS.gene30529.t1 | MTR_7g065740 | 43.541 | 209 | 104 | 5 | 3 | 203 | 6 | 208 | 3.26e-48 | 158 |
MS.gene30529.t1 | MTR_3g099757 | 41.951 | 205 | 116 | 3 | 3 | 205 | 4 | 207 | 2.58e-47 | 155 |
MS.gene30529.t1 | MTR_1g090100 | 42.439 | 205 | 113 | 3 | 5 | 205 | 3 | 206 | 4.46e-47 | 155 |
MS.gene30529.t1 | MTR_5g037380 | 43.662 | 213 | 111 | 5 | 2 | 205 | 3 | 215 | 1.81e-46 | 153 |
MS.gene30529.t1 | MTR_7g065660 | 40.952 | 210 | 111 | 5 | 3 | 205 | 6 | 209 | 1.96e-46 | 153 |
MS.gene30529.t1 | MTR_4g019790 | 41.905 | 210 | 107 | 6 | 4 | 205 | 7 | 209 | 2.25e-46 | 153 |
MS.gene30529.t1 | MTR_1g090150 | 37.557 | 221 | 120 | 7 | 3 | 215 | 2 | 212 | 3.61e-46 | 152 |
MS.gene30529.t1 | MTR_7g065710 | 42.029 | 207 | 111 | 6 | 1 | 204 | 1 | 201 | 4.07e-46 | 152 |
MS.gene30529.t1 | MTR_1g090070 | 40.777 | 206 | 116 | 5 | 4 | 204 | 9 | 213 | 1.35e-45 | 151 |
MS.gene30529.t1 | MTR_7g065290 | 41.706 | 211 | 108 | 6 | 3 | 205 | 6 | 209 | 7.58e-44 | 147 |
MS.gene30529.t1 | MTR_7g065230 | 42.927 | 205 | 105 | 6 | 3 | 203 | 6 | 202 | 1.17e-43 | 146 |
MS.gene30529.t1 | MTR_1g090090 | 40.654 | 214 | 119 | 5 | 4 | 210 | 3 | 215 | 1.31e-43 | 146 |
MS.gene30529.t1 | MTR_7g065270 | 42.233 | 206 | 110 | 6 | 3 | 203 | 6 | 207 | 1.34e-43 | 146 |
MS.gene30529.t1 | MTR_6g080440 | 39.791 | 191 | 110 | 4 | 18 | 205 | 17 | 205 | 1.41e-43 | 146 |
MS.gene30529.t1 | MTR_8g061950 | 38.428 | 229 | 118 | 5 | 4 | 216 | 5 | 226 | 1.90e-43 | 146 |
MS.gene30529.t1 | MTR_7g065680 | 42.439 | 205 | 109 | 5 | 3 | 204 | 6 | 204 | 3.97e-43 | 145 |
MS.gene30529.t1 | MTR_7g065700 | 43.062 | 209 | 110 | 6 | 1 | 206 | 4 | 206 | 1.26e-42 | 144 |
MS.gene30529.t1 | MTR_7g065265 | 41.748 | 206 | 115 | 5 | 3 | 205 | 6 | 209 | 1.54e-42 | 143 |
MS.gene30529.t1 | MTR_7g065590 | 38.095 | 210 | 117 | 5 | 3 | 205 | 6 | 209 | 3.74e-42 | 142 |
MS.gene30529.t1 | MTR_1g115195 | 40.284 | 211 | 117 | 6 | 1 | 205 | 1 | 208 | 4.17e-42 | 142 |
MS.gene30529.t1 | MTR_7g065640 | 38.235 | 204 | 107 | 4 | 3 | 205 | 6 | 191 | 1.55e-40 | 137 |
MS.gene30529.t1 | MTR_7g065600 | 36.866 | 217 | 129 | 5 | 3 | 216 | 6 | 217 | 1.43e-38 | 133 |
MS.gene30529.t1 | MTR_7g065260 | 38.049 | 205 | 114 | 5 | 3 | 200 | 13 | 211 | 3.85e-36 | 127 |
MS.gene30529.t1 | MTR_2g072120 | 62.162 | 74 | 27 | 1 | 47 | 119 | 1 | 74 | 1.41e-29 | 105 |
MS.gene30529.t1 | MTR_4g134370 | 26.168 | 214 | 133 | 7 | 4 | 201 | 15 | 219 | 3.89e-12 | 63.9 |
MS.gene30529.t1 | MTR_4g134380 | 28.070 | 171 | 104 | 5 | 4 | 159 | 15 | 181 | 3.38e-11 | 61.2 |
MS.gene30529.t1 | MTR_1g067180 | 27.451 | 204 | 135 | 6 | 11 | 209 | 31 | 226 | 5.28e-11 | 60.5 |
MS.gene30529.t1 | MTR_1g067180 | 28.000 | 200 | 131 | 6 | 14 | 208 | 37 | 228 | 7.25e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30529.t1 | AT1G17180 | 62.557 | 219 | 82 | 0 | 1 | 219 | 1 | 219 | 4.14e-105 | 302 |
MS.gene30529.t1 | AT1G78380 | 62.963 | 216 | 80 | 0 | 1 | 216 | 1 | 216 | 1.84e-103 | 298 |
MS.gene30529.t1 | AT1G78340 | 64.815 | 216 | 76 | 0 | 1 | 216 | 1 | 216 | 3.67e-103 | 297 |
MS.gene30529.t1 | AT1G78370 | 62.617 | 214 | 80 | 0 | 1 | 214 | 1 | 214 | 1.94e-100 | 290 |
MS.gene30529.t1 | AT1G78320 | 62.617 | 214 | 80 | 0 | 1 | 214 | 1 | 214 | 1.78e-99 | 288 |
MS.gene30529.t1 | AT1G78360 | 61.818 | 220 | 83 | 1 | 1 | 219 | 1 | 220 | 2.03e-99 | 288 |
MS.gene30529.t1 | AT1G17170 | 59.361 | 219 | 88 | 1 | 1 | 219 | 1 | 218 | 9.08e-97 | 281 |
MS.gene30529.t1 | AT1G17190 | 56.279 | 215 | 94 | 0 | 3 | 217 | 4 | 218 | 2.19e-92 | 270 |
MS.gene30529.t1 | AT1G53680 | 53.917 | 217 | 98 | 2 | 5 | 219 | 8 | 224 | 2.46e-86 | 255 |
MS.gene30529.t1 | AT3G43800 | 53.636 | 220 | 98 | 3 | 3 | 218 | 4 | 223 | 6.71e-79 | 236 |
MS.gene30529.t1 | AT1G78320 | 53.738 | 214 | 72 | 1 | 1 | 214 | 1 | 187 | 1.39e-77 | 231 |
MS.gene30529.t1 | AT2G29420 | 44.390 | 205 | 111 | 3 | 2 | 204 | 7 | 210 | 2.17e-57 | 181 |
MS.gene30529.t1 | AT3G09270 | 44.196 | 224 | 107 | 7 | 3 | 217 | 5 | 219 | 1.94e-54 | 174 |
MS.gene30529.t1 | AT2G29490 | 40.777 | 206 | 116 | 4 | 3 | 204 | 6 | 209 | 5.33e-51 | 165 |
MS.gene30529.t1 | AT2G29440 | 42.233 | 206 | 113 | 4 | 3 | 204 | 5 | 208 | 1.97e-50 | 163 |
MS.gene30529.t1 | AT1G74590 | 38.356 | 219 | 123 | 5 | 5 | 216 | 8 | 221 | 3.77e-50 | 163 |
MS.gene30529.t1 | AT2G29450 | 42.788 | 208 | 110 | 6 | 3 | 204 | 5 | 209 | 3.96e-50 | 163 |
MS.gene30529.t1 | AT2G29460 | 40.777 | 206 | 116 | 4 | 3 | 204 | 6 | 209 | 3.94e-49 | 160 |
MS.gene30529.t1 | AT2G29480 | 40.291 | 206 | 117 | 4 | 3 | 204 | 6 | 209 | 7.44e-49 | 159 |
MS.gene30529.t1 | AT2G29470 | 39.512 | 205 | 117 | 5 | 5 | 204 | 8 | 210 | 1.21e-46 | 154 |
MS.gene30529.t1 | AT1G59700 | 40.455 | 220 | 122 | 5 | 3 | 213 | 5 | 224 | 6.41e-46 | 152 |
MS.gene30529.t1 | AT5G62480 | 37.727 | 220 | 125 | 4 | 1 | 209 | 5 | 223 | 9.52e-46 | 152 |
MS.gene30529.t1 | AT1G69930 | 38.942 | 208 | 120 | 3 | 5 | 205 | 13 | 220 | 4.29e-45 | 150 |
MS.gene30529.t1 | AT1G10360 | 39.535 | 215 | 122 | 4 | 2 | 208 | 3 | 217 | 2.19e-43 | 145 |
MS.gene30529.t1 | AT1G27140 | 39.171 | 217 | 122 | 4 | 3 | 209 | 5 | 221 | 2.35e-43 | 146 |
MS.gene30529.t1 | AT1G59670 | 41.014 | 217 | 117 | 5 | 3 | 209 | 5 | 220 | 9.83e-43 | 144 |
MS.gene30529.t1 | AT1G10370 | 39.070 | 215 | 123 | 4 | 2 | 208 | 3 | 217 | 5.45e-42 | 142 |
MS.gene30529.t1 | AT1G27130 | 35.841 | 226 | 133 | 5 | 3 | 219 | 5 | 227 | 1.90e-41 | 140 |
MS.gene30529.t1 | AT1G69920 | 37.500 | 224 | 122 | 6 | 5 | 216 | 35 | 252 | 2.32e-39 | 136 |
MS.gene30529.t1 | AT5G62480 | 30.455 | 220 | 115 | 5 | 1 | 209 | 5 | 197 | 1.03e-27 | 105 |
MS.gene30529.t1 | AT5G62480 | 30.455 | 220 | 114 | 5 | 1 | 209 | 5 | 196 | 1.11e-27 | 105 |
Find 49 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATTATACAATTCGTTTAG+AGG | 0.236689 | 4.4:+41136430 | MS.gene30529:CDS |
GCAATAAGAGATTCACAAAT+TGG | 0.249994 | 4.4:-41135596 | None:intergenic |
AAGTGATTCTGCTTAATTAC+TGG | 0.295778 | 4.4:+41135420 | MS.gene30529:CDS |
TTCAATCTGCATGCATCTAT+TGG | 0.310100 | 4.4:-41136512 | None:intergenic |
AATTACTGGCCAAGTCCTTT+TGG | 0.329731 | 4.4:+41135434 | MS.gene30529:CDS |
TTCAGTATATTGATGAGGTT+TGG | 0.343947 | 4.4:+41135621 | MS.gene30529:CDS |
CAAAATAGCACTTGCTGAAA+AGG | 0.356105 | 4.4:+41135466 | MS.gene30529:CDS |
ATGAAGTTGCAGGGAACCTT+TGG | 0.364940 | 4.4:+41136275 | MS.gene30529:CDS |
CCTCTAAACGAATTGTATAA+TGG | 0.367798 | 4.4:-41136430 | None:intergenic |
TCATGGATCTTATCCTGATC+AGG | 0.386076 | 4.4:-41136553 | None:intergenic |
AAATAGATCTATGAAGTTGC+AGG | 0.398837 | 4.4:+41136265 | MS.gene30529:intron |
TTACCATTATGAATCAGAAC+AGG | 0.399703 | 4.4:-41135572 | None:intergenic |
AGAGATCACAAGCTAGATTC+TGG | 0.406790 | 4.4:+41135681 | MS.gene30529:CDS |
ATCCCTGTTCTGATTCATAA+TGG | 0.418316 | 4.4:+41135569 | MS.gene30529:CDS |
GTGGACCTCAAGAAGAAGTA+TGG | 0.423879 | 4.4:+41136583 | MS.gene30529:CDS |
TTTAGAGGCTATGAGGCCTT+TGG | 0.424953 | 4.4:+41136445 | MS.gene30529:CDS |
TTGGCCCAAGCACTGAACTT+AGG | 0.425895 | 4.4:-41136493 | None:intergenic |
ACTCTTGCTCCAAGAGTTTG+AGG | 0.435255 | 4.4:-41136348 | None:intergenic |
AGTCTCATGCCAAAAGGACT+TGG | 0.442560 | 4.4:-41135443 | None:intergenic |
TATAGAAGCCCTCAAACTCT+TGG | 0.442585 | 4.4:+41136339 | MS.gene30529:CDS |
TTCCAAGTCACTCCCTGATC+AGG | 0.451766 | 4.4:+41136540 | MS.gene30529:CDS |
TGGCCCAAGCACTGAACTTA+GGG | 0.452366 | 4.4:-41136492 | None:intergenic |
CTAGCTTGTGATCTCTGATA+AGG | 0.467136 | 4.4:-41135674 | None:intergenic |
GGTTCATTTGTAACAACAAA+GGG | 0.474781 | 4.4:-41135532 | None:intergenic |
AGAGCAAGAAACTGCAAAGA+AGG | 0.478416 | 4.4:+41136312 | MS.gene30529:CDS |
GTGCCCTAAGTTCAGTGCTT+GGG | 0.482104 | 4.4:+41136489 | MS.gene30529:CDS |
CTCTTGCTCCAAGAGTTTGA+GGG | 0.482617 | 4.4:-41136347 | None:intergenic |
GAGATCACAAGCTAGATTCT+GGG | 0.487661 | 4.4:+41135682 | MS.gene30529:CDS |
CAAACTCTTGGAGCAAGAGT+TGG | 0.489749 | 4.4:+41136351 | MS.gene30529:CDS |
AAACTCTTGGAGCAAGAGTT+GGG | 0.491382 | 4.4:+41136352 | MS.gene30529:CDS |
TAAGGATCAGAAGGCAAGAA+AGG | 0.495497 | 4.4:-41135656 | None:intergenic |
AAAATAGCACTTGCTGAAAA+GGG | 0.503938 | 4.4:+41135467 | MS.gene30529:CDS |
GGCTGATTATGTTGATAAGA+AGG | 0.507102 | 4.4:+41135703 | MS.gene30529:CDS |
CAATTCGTTTAGAGGCTATG+AGG | 0.515280 | 4.4:+41136438 | MS.gene30529:CDS |
AGTGCCCTAAGTTCAGTGCT+TGG | 0.527093 | 4.4:+41136488 | MS.gene30529:CDS |
TGAGGTCCACAATCAAATCA+TGG | 0.533913 | 4.4:-41136570 | None:intergenic |
CAAAGCCATACTTCTTCTTG+AGG | 0.556574 | 4.4:-41136588 | None:intergenic |
TAAGATCCATGATTTGATTG+TGG | 0.557919 | 4.4:+41136564 | MS.gene30529:CDS |
TGCTGTTCAGTATATTGATG+AGG | 0.563629 | 4.4:+41135616 | MS.gene30529:CDS |
CATGGATCTTATCCTGATCA+GGG | 0.576720 | 4.4:-41136552 | None:intergenic |
GAAGAAGTATGGCTTTGAGT+AGG | 0.577171 | 4.4:+41136594 | MS.gene30529:CDS |
CAGAATCACTTCATCAGCCA+TGG | 0.586532 | 4.4:-41135408 | None:intergenic |
AATAGATCTATGAAGTTGCA+GGG | 0.596469 | 4.4:+41136266 | MS.gene30529:intron |
GATCTCTGATAAGGATCAGA+AGG | 0.596783 | 4.4:-41135665 | None:intergenic |
GGGTTCATTTGTAACAACAA+AGG | 0.598423 | 4.4:-41135533 | None:intergenic |
GTCTACACTGATCTTGCCAA+AGG | 0.602126 | 4.4:-41136461 | None:intergenic |
TACCATTATGAATCAGAACA+GGG | 0.629965 | 4.4:-41135571 | None:intergenic |
TGGCAAGATCAGTGTAGACA+AGG | 0.634237 | 4.4:+41136465 | MS.gene30529:CDS |
ATCCTGATCAGGGAGTGACT+TGG | 0.640797 | 4.4:-41136542 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCTTTTTCATAAATTATCA+TGG | - | chr4.4:41135991-41136010 | None:intergenic | 15.0% |
!! | AAAAGAATAAAACTTTCATC+AGG | - | chr4.4:41135820-41135839 | None:intergenic | 20.0% |
!!! | TAAACTCTTCTTTAGAAATA+AGG | - | chr4.4:41135946-41135965 | None:intergenic | 20.0% |
!!! | TTTCTGAAAAGATTAGAAAT+TGG | + | chr4.4:41136087-41136106 | MS.gene30529:intron | 20.0% |
!!! | TTTTGCATTTTTAGTATGAA+GGG | + | chr4.4:41135836-41135855 | MS.gene30529:intron | 20.0% |
!!! | TTTTTCATAAATTATCATGG+AGG | - | chr4.4:41135988-41136007 | None:intergenic | 20.0% |
! | CAATGATGAATCATAGAAAA+GGG | - | chr4.4:41135741-41135760 | None:intergenic | 25.0% |
! | GATACACAATCAATCATATT+AGG | - | chr4.4:41136125-41136144 | None:intergenic | 25.0% |
!!! | CTTTTGCATTTTTAGTATGA+AGG | + | chr4.4:41135835-41135854 | MS.gene30529:intron | 25.0% |
!!! | GGTTATAGTTTGTTTATCAT+TGG | + | chr4.4:41135777-41135796 | MS.gene30529:intron | 25.0% |
AAAACTTTCATCAGGCAAAA+GGG | - | chr4.4:41135812-41135831 | None:intergenic | 30.0% | |
AAATAGATCTATGAAGTTGC+AGG | + | chr4.4:41136265-41136284 | MS.gene30529:intron | 30.0% | |
AAGTGATTCTGCTTAATTAC+TGG | + | chr4.4:41135420-41135439 | MS.gene30529:CDS | 30.0% | |
AATAGATCTATGAAGTTGCA+GGG | + | chr4.4:41136266-41136285 | MS.gene30529:intron | 30.0% | |
CCATTATACAATTCGTTTAG+AGG | + | chr4.4:41136430-41136449 | MS.gene30529:CDS | 30.0% | |
CCTCTAAACGAATTGTATAA+TGG | - | chr4.4:41136433-41136452 | None:intergenic | 30.0% | |
GCAATAAGAGATTCACAAAT+TGG | - | chr4.4:41135599-41135618 | None:intergenic | 30.0% | |
GCAATGATGAATCATAGAAA+AGG | - | chr4.4:41135742-41135761 | None:intergenic | 30.0% | |
GGTTCATTTGTAACAACAAA+GGG | - | chr4.4:41135535-41135554 | None:intergenic | 30.0% | |
TAAAACTTTCATCAGGCAAA+AGG | - | chr4.4:41135813-41135832 | None:intergenic | 30.0% | |
TAAGATCCATGATTTGATTG+TGG | + | chr4.4:41136564-41136583 | MS.gene30529:CDS | 30.0% | |
TACCATTATGAATCAGAACA+GGG | - | chr4.4:41135574-41135593 | None:intergenic | 30.0% | |
TTACCATTATGAATCAGAAC+AGG | - | chr4.4:41135575-41135594 | None:intergenic | 30.0% | |
TTCAGTATATTGATGAGGTT+TGG | + | chr4.4:41135621-41135640 | MS.gene30529:CDS | 30.0% | |
! | AAAATAGCACTTGCTGAAAA+GGG | + | chr4.4:41135467-41135486 | MS.gene30529:CDS | 30.0% |
!!! | TTGGGAGACAAGAATTTTTT+TGG | + | chr4.4:41136370-41136389 | MS.gene30529:CDS | 30.0% |
ATCCCTGTTCTGATTCATAA+TGG | + | chr4.4:41135569-41135588 | MS.gene30529:CDS | 35.0% | |
CATTGCATGTGATTGTTTGT+TGG | + | chr4.4:41135756-41135775 | MS.gene30529:intron | 35.0% | |
CTCCTATATAGTCTCATAAG+TGG | - | chr4.4:41135880-41135899 | None:intergenic | 35.0% | |
GGGTTCATTTGTAACAACAA+AGG | - | chr4.4:41135536-41135555 | None:intergenic | 35.0% | |
TGCTGTTCAGTATATTGATG+AGG | + | chr4.4:41135616-41135635 | MS.gene30529:CDS | 35.0% | |
TTCAATCTGCATGCATCTAT+TGG | - | chr4.4:41136515-41136534 | None:intergenic | 35.0% | |
! | ACAGGGATTTTCTTATGAAC+AGG | - | chr4.4:41135557-41135576 | None:intergenic | 35.0% |
! | CAAAATAGCACTTGCTGAAA+AGG | + | chr4.4:41135466-41135485 | MS.gene30529:CDS | 35.0% |
! | CAGGGATTTTCTTATGAACA+GGG | - | chr4.4:41135556-41135575 | None:intergenic | 35.0% |
! | GGCTGATTATGTTGATAAGA+AGG | + | chr4.4:41135703-41135722 | MS.gene30529:CDS | 35.0% |
! | TGCCACTTATGAGACTATAT+AGG | + | chr4.4:41135875-41135894 | MS.gene30529:intron | 35.0% |
!! | ATTTTGAGTCTCATGCCAAA+AGG | - | chr4.4:41135452-41135471 | None:intergenic | 35.0% |
!!! | GGAGACAAGAATTTTTTTGG+AGG | + | chr4.4:41136373-41136392 | MS.gene30529:CDS | 35.0% |
!!! | TTCTTGCTCTTCTCCTTTTT+TGG | - | chr4.4:41136302-41136321 | None:intergenic | 35.0% |
AAACTCTTGGAGCAAGAGTT+GGG | + | chr4.4:41136352-41136371 | MS.gene30529:CDS | 40.0% | |
AGAGATCACAAGCTAGATTC+TGG | + | chr4.4:41135681-41135700 | MS.gene30529:CDS | 40.0% | |
AGAGCAAGAAACTGCAAAGA+AGG | + | chr4.4:41136312-41136331 | MS.gene30529:CDS | 40.0% | |
CAAAGCCATACTTCTTCTTG+AGG | - | chr4.4:41136591-41136610 | None:intergenic | 40.0% | |
CAATTCGTTTAGAGGCTATG+AGG | + | chr4.4:41136438-41136457 | MS.gene30529:CDS | 40.0% | |
CATGGATCTTATCCTGATCA+GGG | - | chr4.4:41136555-41136574 | None:intergenic | 40.0% | |
GAGATCACAAGCTAGATTCT+GGG | + | chr4.4:41135682-41135701 | MS.gene30529:CDS | 40.0% | |
GATCTCTGATAAGGATCAGA+AGG | - | chr4.4:41135668-41135687 | None:intergenic | 40.0% | |
TAAGGATCAGAAGGCAAGAA+AGG | - | chr4.4:41135659-41135678 | None:intergenic | 40.0% | |
TATAGAAGCCCTCAAACTCT+TGG | + | chr4.4:41136339-41136358 | MS.gene30529:CDS | 40.0% | |
TCATGGATCTTATCCTGATC+AGG | - | chr4.4:41136556-41136575 | None:intergenic | 40.0% | |
TGAGGTCCACAATCAAATCA+TGG | - | chr4.4:41136573-41136592 | None:intergenic | 40.0% | |
! | AATTACTGGCCAAGTCCTTT+TGG | + | chr4.4:41135434-41135453 | MS.gene30529:CDS | 40.0% |
! | CTAGCTTGTGATCTCTGATA+AGG | - | chr4.4:41135677-41135696 | None:intergenic | 40.0% |
!!! | CTTCTCCTTTTTTGGTCCAA+AGG | - | chr4.4:41136294-41136313 | None:intergenic | 40.0% |
!!! | TTTTTTGGAGGAGACAAGCT+TGG | + | chr4.4:41136385-41136404 | MS.gene30529:CDS | 40.0% |
ACTCTTGCTCCAAGAGTTTG+AGG | - | chr4.4:41136351-41136370 | None:intergenic | 45.0% | |
AGTCTCATGCCAAAAGGACT+TGG | - | chr4.4:41135446-41135465 | None:intergenic | 45.0% | |
ATGAAGTTGCAGGGAACCTT+TGG | + | chr4.4:41136275-41136294 | MS.gene30529:CDS | 45.0% | |
CAAACTCTTGGAGCAAGAGT+TGG | + | chr4.4:41136351-41136370 | MS.gene30529:CDS | 45.0% | |
CTCTTGCTCCAAGAGTTTGA+GGG | - | chr4.4:41136350-41136369 | None:intergenic | 45.0% | |
GGGAACCTTTGGACCAAAAA+AGG | + | chr4.4:41136286-41136305 | MS.gene30529:CDS | 45.0% | |
GTCTACACTGATCTTGCCAA+AGG | - | chr4.4:41136464-41136483 | None:intergenic | 45.0% | |
GTGGACCTCAAGAAGAAGTA+TGG | + | chr4.4:41136583-41136602 | MS.gene30529:CDS | 45.0% | |
TGGCAAGATCAGTGTAGACA+AGG | + | chr4.4:41136465-41136484 | MS.gene30529:CDS | 45.0% | |
TTTAGAGGCTATGAGGCCTT+TGG | + | chr4.4:41136445-41136464 | MS.gene30529:CDS | 45.0% | |
AGTGCCCTAAGTTCAGTGCT+TGG | + | chr4.4:41136488-41136507 | MS.gene30529:CDS | 50.0% | |
ATCCTGATCAGGGAGTGACT+TGG | - | chr4.4:41136545-41136564 | None:intergenic | 50.0% | |
GTGCCCTAAGTTCAGTGCTT+GGG | + | chr4.4:41136489-41136508 | MS.gene30529:CDS | 50.0% | |
TTCCAAGTCACTCCCTGATC+AGG | + | chr4.4:41136540-41136559 | MS.gene30529:CDS | 50.0% | |
!! | TGGCCCAAGCACTGAACTTA+GGG | - | chr4.4:41136495-41136514 | None:intergenic | 50.0% |
!! | TTGGCCCAAGCACTGAACTT+AGG | - | chr4.4:41136496-41136515 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 41135410 | 41136615 | 41135410 | ID=MS.gene30529 |
chr4.4 | mRNA | 41135410 | 41136615 | 41135410 | ID=MS.gene30529.t1;Parent=MS.gene30529 |
chr4.4 | exon | 41135410 | 41135724 | 41135410 | ID=MS.gene30529.t1.exon1;Parent=MS.gene30529.t1 |
chr4.4 | CDS | 41135410 | 41135724 | 41135410 | ID=cds.MS.gene30529.t1;Parent=MS.gene30529.t1 |
chr4.4 | exon | 41136271 | 41136615 | 41136271 | ID=MS.gene30529.t1.exon2;Parent=MS.gene30529.t1 |
chr4.4 | CDS | 41136271 | 41136615 | 41136271 | ID=cds.MS.gene30529.t1;Parent=MS.gene30529.t1 |
Gene Sequence |
Protein sequence |