AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062846

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062846.t1 MTR_2g070180 89.401 217 23 0 1 217 1 217 2.00e-145 404
MS.gene062846.t1 MTR_2g070150 85.784 204 29 0 1 204 1 204 4.33e-134 375
MS.gene062846.t1 MTR_2g070130 78.704 216 46 0 1 216 1 216 3.17e-130 365
MS.gene062846.t1 MTR_2g070140 83.838 198 32 0 17 214 1 198 1.41e-126 356
MS.gene062846.t1 MTR_2g070210 72.811 217 57 1 1 215 1 217 6.11e-120 340
MS.gene062846.t1 MTR_2g070200 67.580 219 68 3 1 216 1 219 1.24e-110 316
MS.gene062846.t1 MTR_2g070060 62.617 214 80 0 1 214 1 214 1.51e-104 301
MS.gene062846.t1 MTR_2g070070 63.551 214 78 0 1 214 1 214 1.37e-101 293
MS.gene062846.t1 MTR_3g467420 59.048 210 86 0 5 214 10 219 2.31e-96 280
MS.gene062846.t1 MTR_2g070110 60.748 214 83 1 1 214 1 213 5.79e-95 276
MS.gene062846.t1 MTR_8g056940 61.682 214 82 0 1 214 1 214 3.30e-94 275
MS.gene062846.t1 MTR_3g467430 57.075 212 91 0 3 214 8 219 3.21e-92 270
MS.gene062846.t1 MTR_2g070120 59.155 213 87 0 1 213 1 213 1.22e-90 265
MS.gene062846.t1 MTR_4g124130 54.884 215 96 1 1 214 1 215 4.21e-85 251
MS.gene062846.t1 MTR_5g076900 51.389 216 103 2 2 216 4 218 7.50e-78 233
MS.gene062846.t1 MTR_0186s0030 66.667 141 47 0 1 141 1 141 1.02e-61 189
MS.gene062846.t1 MTR_1g090060 41.748 206 115 3 4 205 3 207 5.80e-50 162
MS.gene062846.t1 MTR_8g087425 39.320 206 122 2 2 205 3 207 9.91e-47 154
MS.gene062846.t1 MTR_5g040430 35.545 211 129 2 2 205 5 215 2.02e-46 153
MS.gene062846.t1 MTR_5g037380 40.376 213 118 5 2 205 3 215 8.77e-46 152
MS.gene062846.t1 MTR_4g059730 39.234 209 122 3 1 205 1 208 7.94e-45 149
MS.gene062846.t1 MTR_7g065740 41.463 205 114 5 3 203 6 208 8.02e-45 149
MS.gene062846.t1 MTR_7g065750 40.976 205 115 5 3 203 6 208 8.10e-44 146
MS.gene062846.t1 MTR_3g099757 37.561 205 125 2 3 205 4 207 2.66e-43 145
MS.gene062846.t1 MTR_1g090100 40.976 205 116 3 5 205 3 206 2.75e-43 145
MS.gene062846.t1 MTR_7g065720 39.024 205 119 5 3 203 6 208 5.56e-43 144
MS.gene062846.t1 MTR_8g087410 39.706 204 120 2 4 205 6 208 5.87e-43 144
MS.gene062846.t1 MTR_4g019780 38.835 206 121 4 3 205 7 210 6.41e-43 144
MS.gene062846.t1 MTR_1g090070 39.130 207 118 5 4 204 9 213 9.06e-43 144
MS.gene062846.t1 MTR_4g019790 40.887 203 115 5 4 203 7 207 9.14e-43 144
MS.gene062846.t1 MTR_7g065660 38.725 204 120 4 3 203 6 207 2.52e-42 142
MS.gene062846.t1 MTR_7g065630 37.073 205 120 5 3 204 24 222 1.20e-40 139
MS.gene062846.t1 MTR_1g090090 39.070 215 123 5 4 211 3 216 1.82e-40 138
MS.gene062846.t1 MTR_7g065270 37.745 204 122 5 3 203 6 207 3.39e-40 137
MS.gene062846.t1 MTR_1g090150 37.963 216 124 6 3 214 2 211 4.83e-40 137
MS.gene062846.t1 MTR_8g061950 34.579 214 131 3 4 208 5 218 1.69e-39 135
MS.gene062846.t1 MTR_7g065590 35.784 204 126 4 3 203 6 207 4.79e-39 134
MS.gene062846.t1 MTR_6g080440 39.572 187 108 4 22 205 21 205 5.37e-39 134
MS.gene062846.t1 MTR_7g065710 36.585 205 125 5 1 204 1 201 2.88e-38 132
MS.gene062846.t1 MTR_7g065265 37.379 206 124 5 3 205 6 209 9.04e-38 131
MS.gene062846.t1 MTR_7g065290 37.379 206 124 5 3 205 6 209 2.46e-37 130
MS.gene062846.t1 MTR_7g065230 37.438 203 119 5 3 203 6 202 5.48e-37 129
MS.gene062846.t1 MTR_7g065700 37.619 210 126 5 1 209 4 209 1.85e-36 127
MS.gene062846.t1 MTR_7g065600 35.294 204 127 4 3 203 6 207 1.02e-35 125
MS.gene062846.t1 MTR_7g065680 43.210 162 87 4 3 161 6 165 1.92e-35 125
MS.gene062846.t1 MTR_1g115195 35.268 224 133 6 1 217 1 219 5.43e-35 124
MS.gene062846.t1 MTR_7g065640 43.357 143 79 2 3 144 6 147 2.79e-33 119
MS.gene062846.t1 MTR_7g065260 36.318 201 123 5 3 200 13 211 7.36e-32 116
MS.gene062846.t1 MTR_2g072120 62.162 74 27 1 47 119 1 74 5.47e-29 103
MS.gene062846.t1 MTR_4g134370 29.714 175 96 5 4 159 15 181 1.34e-13 67.8
MS.gene062846.t1 MTR_4g134380 27.647 170 106 5 4 159 15 181 1.81e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062846.t1 AT1G78380 65.421 214 74 0 1 214 1 214 6.13e-106 304
MS.gene062846.t1 AT1G17180 62.150 214 81 0 1 214 1 214 2.32e-103 298
MS.gene062846.t1 AT1G78360 62.500 216 80 1 1 215 1 216 1.50e-100 291
MS.gene062846.t1 AT1G78370 61.682 214 82 0 1 214 1 214 1.11e-99 288
MS.gene062846.t1 AT1G17170 61.682 214 81 1 1 214 1 213 8.12e-99 286
MS.gene062846.t1 AT1G78340 59.070 215 88 0 1 215 1 215 3.22e-98 285
MS.gene062846.t1 AT1G78320 60.465 215 85 0 1 215 1 215 7.00e-97 281
MS.gene062846.t1 AT1G17190 58.019 212 89 0 3 214 4 215 3.45e-91 267
MS.gene062846.t1 AT1G53680 53.052 213 98 2 5 215 8 220 1.40e-85 253
MS.gene062846.t1 AT3G43800 55.760 217 92 3 3 215 4 220 1.37e-82 245
MS.gene062846.t1 AT1G78320 51.628 215 77 1 1 215 1 188 5.57e-75 225
MS.gene062846.t1 AT2G29420 40.000 205 120 3 2 204 7 210 1.34e-51 166
MS.gene062846.t1 AT3G09270 39.171 217 124 5 3 215 5 217 1.46e-47 156
MS.gene062846.t1 AT2G29450 41.546 207 114 5 3 204 5 209 1.76e-46 153
MS.gene062846.t1 AT2G29440 40.777 206 116 4 3 204 5 208 2.27e-46 153
MS.gene062846.t1 AT2G29490 38.350 206 121 4 3 204 6 209 1.67e-45 151
MS.gene062846.t1 AT2G29460 37.379 206 123 4 3 204 6 209 5.15e-44 147
MS.gene062846.t1 AT2G29480 37.379 206 123 4 3 204 6 209 1.54e-43 146
MS.gene062846.t1 AT1G10360 38.813 219 126 4 2 212 3 221 2.28e-43 145
MS.gene062846.t1 AT1G59700 38.182 220 125 5 3 212 5 223 4.45e-43 145
MS.gene062846.t1 AT1G10370 37.387 222 117 4 2 208 3 217 3.56e-41 140
MS.gene062846.t1 AT2G29470 36.585 205 123 5 5 204 8 210 1.31e-40 138
MS.gene062846.t1 AT1G59670 39.091 220 123 5 3 212 5 223 3.27e-40 137
MS.gene062846.t1 AT1G74590 34.722 216 135 3 5 214 8 223 5.52e-40 137
MS.gene062846.t1 AT5G62480 34.071 226 139 3 1 216 5 230 9.53e-40 136
MS.gene062846.t1 AT1G27140 37.788 217 125 4 3 209 5 221 2.09e-38 133
MS.gene062846.t1 AT1G27130 35.849 212 127 4 3 205 5 216 2.97e-37 130
MS.gene062846.t1 AT1G69930 35.577 208 127 3 5 205 13 220 8.33e-37 129
MS.gene062846.t1 AT1G69920 34.762 210 118 6 5 200 35 239 1.97e-33 120
MS.gene062846.t1 AT5G62480 27.876 226 127 4 1 216 5 204 5.14e-23 92.8
MS.gene062846.t1 AT5G62480 28.125 224 124 4 3 216 7 203 5.71e-23 92.4

Find 47 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATCACAATCTTTATTT+TGG 0.067140 2.4:+25145370 MS.gene062846:CDS
TTGGGAGACAAAATTTATTA+TGG 0.221129 2.4:+25146254 MS.gene062846:CDS
ATCCCTGTTCTTATTCATAA+TGG 0.265063 2.4:+25145258 MS.gene062846:CDS
TTCAGTATATTGATGAAGTT+TGG 0.281776 2.4:+25145310 MS.gene062846:CDS
CAAATTGTTGGAGCAAGAAT+TGG 0.293479 2.4:+25146235 MS.gene062846:CDS
AAGGAACCTTTGGGCCAAAA+AGG 0.311321 2.4:+25146169 MS.gene062846:CDS
AAGTGATTCTGCTAAATTAC+TGG 0.327147 2.4:+25145109 MS.gene062846:CDS
AAAGATTGTGATTTCTGATA+AGG 0.348990 2.4:-25145363 None:intergenic
TTGACGTTGGAAGGAACCTT+TGG 0.357525 2.4:+25146159 MS.gene062846:CDS
CTCAATCTGCATACATCTAT+TGG 0.378145 2.4:-25146396 None:intergenic
ATTCTTGCTCCAACAATTTG+TGG 0.381385 2.4:-25146232 None:intergenic
TTTCCATTATGAATAAGAAC+AGG 0.384624 2.4:-25145261 None:intergenic
CAGAATAGCCCTAGCTGAAA+AGG 0.391467 2.4:+25145155 MS.gene062846:CDS
CATAGATGTCCACAAATTGT+TGG 0.405958 2.4:+25146223 MS.gene062846:CDS
TTTAAAAGTTATGAAACCTT+TGG 0.418179 2.4:+25146329 MS.gene062846:CDS
AATTACTGGGCAAGTCCATT+TGG 0.420131 2.4:+25145123 MS.gene062846:CDS
TTCAAAGTCTCTTCCTGATC+AGG 0.420326 2.4:+25146424 MS.gene062846:CDS
AGCAATTAAAGATTCACAAA+TGG 0.421376 2.4:-25145286 None:intergenic
CACTTATTCCATACTACACT+TGG 0.423079 2.4:+25146306 MS.gene062846:CDS
GGCTGATTATATTGATAAGA+AGG 0.427339 2.4:+25145392 MS.gene062846:CDS
GCAATTAAAGATTCACAAAT+GGG 0.429408 2.4:-25145285 None:intergenic
TCATGGACCTTATCCTGATC+AGG 0.451856 2.4:-25146437 None:intergenic
TTGGCCCAAGCAATGAACTT+AGG 0.452050 2.4:-25146377 None:intergenic
AATAGATATTTGACGTTGGA+AGG 0.456845 2.4:+25146150 MS.gene062846:intron
GTCTCTTCCTGATCAGGATA+AGG 0.461296 2.4:+25146430 MS.gene062846:CDS
ATGCCCTAAGTTCATTGCTT+GGG 0.465024 2.4:+25146373 MS.gene062846:CDS
AATGCCCTAAGTTCATTGCT+TGG 0.469149 2.4:+25146372 MS.gene062846:CDS
TGACGTTGGAAGGAACCTTT+GGG 0.469728 2.4:+25146160 MS.gene062846:CDS
GACATCTATGAATTCTTTGT+TGG 0.470934 2.4:-25146210 None:intergenic
AAATTGTTGGAGCAAGAATT+GGG 0.479522 2.4:+25146236 MS.gene062846:CDS
TGGCCCAAGCAATGAACTTA+GGG 0.487336 2.4:-25146376 None:intergenic
TATTATGGAGGAGATAAGCT+TGG 0.494984 2.4:+25146269 MS.gene062846:CDS
ATTCTGACACTCATGCCAAA+TGG 0.508263 2.4:-25145138 None:intergenic
GGAGACAAAATTTATTATGG+AGG 0.514837 2.4:+25146257 MS.gene062846:CDS
GGTTCATTTGAAGTAACAAA+GGG 0.524302 2.4:-25145221 None:intergenic
CTCTAGACTGATCTTACCAA+AGG 0.536129 2.4:-25146345 None:intergenic
AGAATAGCCCTAGCTGAAAA+GGG 0.546394 2.4:+25145156 MS.gene062846:CDS
AGTGATTCTGCTAAATTACT+GGG 0.570622 2.4:+25145110 MS.gene062846:CDS
GTCAAATAGATATTTGACGT+TGG 0.578893 2.4:+25146146 MS.gene062846:intron
GGGTTCATTTGAAGTAACAA+AGG 0.580169 2.4:-25145222 None:intergenic
GATTTCTGATAAGGATCAGA+AGG 0.582641 2.4:-25145354 None:intergenic
CAGAATCACTTCATCAGCCA+TGG 0.586532 2.4:-25145097 None:intergenic
TGGTAAGATCAGTCTAGAGA+AGG 0.602196 2.4:+25146349 MS.gene062846:CDS
TAAGGATCAGAAGGCAACAA+AGG 0.613337 2.4:-25145345 None:intergenic
TCAGCTCTACAATTAAGTCA+TGG 0.618125 2.4:-25146454 None:intergenic
ATGACTTAATTGTAGAGCTG+AGG 0.630926 2.4:+25146456 MS.gene062846:CDS
TTCCATTATGAATAAGAACA+GGG 0.638163 2.4:-25145260 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATAAAATAAAGTTTAT+AGG - chr2.4:25145548-25145567 None:intergenic 10.0%
!!! ATAATATTTTTTTTTTTGAG+AGG - chr2.4:25145471-25145490 None:intergenic 10.0%
!!! TTTATAAAATTAGCTTATAT+TGG + chr2.4:25145568-25145587 MS.gene062846:intron 10.0%
!! AATTTGAAGATAATTGAAAT+TGG + chr2.4:25145694-25145713 MS.gene062846:intron 15.0%
!! ATTTGAAGATAATTGAAATT+GGG + chr2.4:25145695-25145714 MS.gene062846:intron 15.0%
!! AACAAAATGATCAGTTAAAT+GGG - chr2.4:25145826-25145845 None:intergenic 20.0%
!! CTATAATCACTTAACTAATT+AGG + chr2.4:25145615-25145634 MS.gene062846:intron 20.0%
!! GTATTAATTAGAATTATAGC+TGG + chr2.4:25145982-25146001 MS.gene062846:intron 20.0%
!! TAAGCTATTTGTACAAATTA+GGG + chr2.4:25145641-25145660 MS.gene062846:intron 20.0%
!! TACACATTTCATTCATATTA+AGG - chr2.4:25145667-25145686 None:intergenic 20.0%
!! TTAAGCTATTTGTACAAATT+AGG + chr2.4:25145640-25145659 MS.gene062846:intron 20.0%
!! TTTAAAAGTTATGAAACCTT+TGG + chr2.4:25146329-25146348 MS.gene062846:CDS 20.0%
!! TTTGAAGATAATTGAAATTG+GGG + chr2.4:25145696-25145715 MS.gene062846:intron 20.0%
!!! AGAAATCACAATCTTTATTT+TGG + chr2.4:25145370-25145389 MS.gene062846:CDS 20.0%
!!! GAAATCACAATCTTTATTTT+GGG + chr2.4:25145371-25145390 MS.gene062846:CDS 20.0%
!!! TGATAAGAAGGTATATAAAT+TGG + chr2.4:25145404-25145423 MS.gene062846:intron 20.0%
! AAAGATTGTGATTTCTGATA+AGG - chr2.4:25145366-25145385 None:intergenic 25.0%
! ACAAATGACTCAGTTATTAA+GGG + chr2.4:25146075-25146094 MS.gene062846:intron 25.0%
! ACTTTGCATTTATGATAAGA+AGG - chr2.4:25145932-25145951 None:intergenic 25.0%
! AGCAAAAAGAAGAAGATTTA+AGG + chr2.4:25145190-25145209 MS.gene062846:CDS 25.0%
! AGCAATTAAAGATTCACAAA+TGG - chr2.4:25145289-25145308 None:intergenic 25.0%
! CTTTGCATTTATGATAAGAA+GGG - chr2.4:25145931-25145950 None:intergenic 25.0%
! GAACAAAATGATCAGTTAAA+TGG - chr2.4:25145827-25145846 None:intergenic 25.0%
! GCAATTAAAGATTCACAAAT+GGG - chr2.4:25145288-25145307 None:intergenic 25.0%
! GTGAAATGAGTCAAAAAAAT+TGG + chr2.4:25146033-25146052 MS.gene062846:intron 25.0%
! TACAAATGACTCAGTTATTA+AGG + chr2.4:25146074-25146093 MS.gene062846:intron 25.0%
! TTCAGTATATTGATGAAGTT+TGG + chr2.4:25145310-25145329 MS.gene062846:CDS 25.0%
! TTCCATTATGAATAAGAACA+GGG - chr2.4:25145263-25145282 None:intergenic 25.0%
! TTGAAGATAATTGAAATTGG+GGG + chr2.4:25145697-25145716 MS.gene062846:intron 25.0%
! TTGGGAGACAAAATTTATTA+TGG + chr2.4:25146254-25146273 MS.gene062846:CDS 25.0%
! TTTCCATTATGAATAAGAAC+AGG - chr2.4:25145264-25145283 None:intergenic 25.0%
AAATTGTTGGAGCAAGAATT+GGG + chr2.4:25146236-25146255 MS.gene062846:CDS 30.0%
AAGTGATTCTGCTAAATTAC+TGG + chr2.4:25145109-25145128 MS.gene062846:CDS 30.0%
AATAGATATTTGACGTTGGA+AGG + chr2.4:25146150-25146169 MS.gene062846:intron 30.0%
AGTGATTCTGCTAAATTACT+GGG + chr2.4:25145110-25145129 MS.gene062846:CDS 30.0%
ATCCCTGTTCTTATTCATAA+TGG + chr2.4:25145258-25145277 MS.gene062846:CDS 30.0%
CGAATATTTATCATCATGCA+TGG + chr2.4:25145739-25145758 MS.gene062846:intron 30.0%
GACATCTATGAATTCTTTGT+TGG - chr2.4:25146213-25146232 None:intergenic 30.0%
GGAGACAAAATTTATTATGG+AGG + chr2.4:25146257-25146276 MS.gene062846:CDS 30.0%
GGCTGATTATATTGATAAGA+AGG + chr2.4:25145392-25145411 MS.gene062846:CDS 30.0%
GTCAAATAGATATTTGACGT+TGG + chr2.4:25146146-25146165 MS.gene062846:intron 30.0%
TTAAGTGTCTTGTCAAGTAT+TGG + chr2.4:25145900-25145919 MS.gene062846:intron 30.0%
! CTTTTAAACCAAGTGTAGTA+TGG - chr2.4:25146317-25146336 None:intergenic 30.0%
! GGTTCATTTGAAGTAACAAA+GGG - chr2.4:25145224-25145243 None:intergenic 30.0%
ATCATGCATGGTCACTATAT+TGG + chr2.4:25145751-25145770 MS.gene062846:intron 35.0%
ATGACTTAATTGTAGAGCTG+AGG + chr2.4:25146456-25146475 MS.gene062846:CDS 35.0%
ATTCTTGCTCCAACAATTTG+TGG - chr2.4:25146235-25146254 None:intergenic 35.0%
CAAATTGTTGGAGCAAGAAT+TGG + chr2.4:25146235-25146254 MS.gene062846:CDS 35.0%
CACTTATTCCATACTACACT+TGG + chr2.4:25146306-25146325 MS.gene062846:CDS 35.0%
CATAGATGTCCACAAATTGT+TGG + chr2.4:25146223-25146242 MS.gene062846:CDS 35.0%
CTCAATCTGCATACATCTAT+TGG - chr2.4:25146399-25146418 None:intergenic 35.0%
GATCAGTTAAATGGGACAAA+GGG - chr2.4:25145818-25145837 None:intergenic 35.0%
GATTTCTGATAAGGATCAGA+AGG - chr2.4:25145357-25145376 None:intergenic 35.0%
GTCACTATATTGGCAAGTAT+TGG + chr2.4:25145761-25145780 MS.gene062846:intron 35.0%
TATTATGGAGGAGATAAGCT+TGG + chr2.4:25146269-25146288 MS.gene062846:CDS 35.0%
TCAGCTCTACAATTAAGTCA+TGG - chr2.4:25146457-25146476 None:intergenic 35.0%
TGATCAGTTAAATGGGACAA+AGG - chr2.4:25145819-25145838 None:intergenic 35.0%
! ACAGGGATTTTCTTGTGAAT+AGG - chr2.4:25145246-25145265 None:intergenic 35.0%
! CAGGGATTTTCTTGTGAATA+GGG - chr2.4:25145245-25145264 None:intergenic 35.0%
! GGGTTCATTTGAAGTAACAA+AGG - chr2.4:25145225-25145244 None:intergenic 35.0%
!! TATTGGCAAGTATTGGTTCT+TGG + chr2.4:25145768-25145787 MS.gene062846:intron 35.0%
AATGCCCTAAGTTCATTGCT+TGG + chr2.4:25146372-25146391 MS.gene062846:CDS 40.0%
AATTACTGGGCAAGTCCATT+TGG + chr2.4:25145123-25145142 MS.gene062846:CDS 40.0%
AGAATAGCCCTAGCTGAAAA+GGG + chr2.4:25145156-25145175 MS.gene062846:CDS 40.0%
ATGCCCTAAGTTCATTGCTT+GGG + chr2.4:25146373-25146392 MS.gene062846:CDS 40.0%
ATTCTGACACTCATGCCAAA+TGG - chr2.4:25145141-25145160 None:intergenic 40.0%
CTCTAGACTGATCTTACCAA+AGG - chr2.4:25146348-25146367 None:intergenic 40.0%
TAAGGATCAGAAGGCAACAA+AGG - chr2.4:25145348-25145367 None:intergenic 40.0%
TGGTAAGATCAGTCTAGAGA+AGG + chr2.4:25146349-25146368 MS.gene062846:CDS 40.0%
TTCAAAGTCTCTTCCTGATC+AGG + chr2.4:25146424-25146443 MS.gene062846:CDS 40.0%
! CTTGATACCCTTTTCAGCTA+GGG - chr2.4:25145166-25145185 None:intergenic 40.0%
! TTCTTGCTCTTCTCCCTTTT+TGG - chr2.4:25146186-25146205 None:intergenic 40.0%
!!! AGGAGATAAGCTTGGTTTTG+TGG + chr2.4:25146277-25146296 MS.gene062846:CDS 40.0%
AAGGAACCTTTGGGCCAAAA+AGG + chr2.4:25146169-25146188 MS.gene062846:CDS 45.0%
AGGAACCTTTGGGCCAAAAA+GGG + chr2.4:25146170-25146189 MS.gene062846:CDS 45.0%
ATGGGACAAAGGGAGTAACA+AGG - chr2.4:25145808-25145827 None:intergenic 45.0%
CAGAATAGCCCTAGCTGAAA+AGG + chr2.4:25145155-25145174 MS.gene062846:CDS 45.0%
GTCTCTTCCTGATCAGGATA+AGG + chr2.4:25146430-25146449 MS.gene062846:CDS 45.0%
TCATGGACCTTATCCTGATC+AGG - chr2.4:25146440-25146459 None:intergenic 45.0%
TGACGTTGGAAGGAACCTTT+GGG + chr2.4:25146160-25146179 MS.gene062846:CDS 45.0%
TGGCCCAAGCAATGAACTTA+GGG - chr2.4:25146379-25146398 None:intergenic 45.0%
TTGACGTTGGAAGGAACCTT+TGG + chr2.4:25146159-25146178 MS.gene062846:CDS 45.0%
TTGGCCCAAGCAATGAACTT+AGG - chr2.4:25146380-25146399 None:intergenic 45.0%
! GCTTGATACCCTTTTCAGCT+AGG - chr2.4:25145167-25145186 None:intergenic 45.0%
!! TGGCAAGTATTGGTTCTTGG+TGG + chr2.4:25145771-25145790 MS.gene062846:intron 45.0%
!! CTTCTCCCTTTTTGGCCCAA+AGG - chr2.4:25146178-25146197 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 25145099 25146493 25145099 ID=MS.gene062846
chr2.4 mRNA 25145099 25146493 25145099 ID=MS.gene062846.t1;Parent=MS.gene062846
chr2.4 exon 25145099 25145413 25145099 ID=MS.gene062846.t1.exon1;Parent=MS.gene062846.t1
chr2.4 CDS 25145099 25145413 25145099 ID=cds.MS.gene062846.t1;Parent=MS.gene062846.t1
chr2.4 exon 25146155 25146493 25146155 ID=MS.gene062846.t1.exon2;Parent=MS.gene062846.t1
chr2.4 CDS 25146155 25146493 25146155 ID=cds.MS.gene062846.t1;Parent=MS.gene062846.t1
Gene Sequence

>MS.gene062846

ATGGCTGATGAAGTGATTCTGCTAAATTACTGGGCAAGTCCATTTGGCATGAGTGTCAGAATAGCCCTAGCTGAAAAGGGTATCAAGCATGAGCAAAAAGAAGAAGATTTAAGGAACAAGAGCCCTTTGTTACTTCAAATGAACCCTATTCACAAGAAAATCCCTGTTCTTATTCATAATGGAAAACCCATTTGTGAATCTTTAATTGCTGTTCAGTATATTGATGAAGTTTGGAATGAGAAATCTCCTTTGTTGCCTTCTGATCCTTATCAGAAATCACAATCTTTATTTTGGGCTGATTATATTGATAAGAAGGTATATAAATTGGTCTACATAAGTTTTTTCTTATATTTATAAAATATTATGAATCCTCTCAAAAAAAAAAATATTATGAATCAAGAGACGAGAATTTAGAAAAAAAAAAAGCTTATATTTTATATAATAAACCTATAAACTTTATTTTATCTTTTTTATAAAATTAGCTTATATTGGAGACTTATATGATGAGTGTTTAAGCTATAATCACTTAACTAATTAGGTATTAAGCTATTTGTACAAATTAGGGCCTTAATATGAATGAAATGTGTATGTCAATAATTTGAAGATAATTGAAATTGGGGGTACTTTTGTTTTAAACAAACGAATATTTATCATCATGCATGGTCACTATATTGGCAAGTATTGGTTCTTGGTGGCTGTTGTTTTTCCTTGTTACTCCCTTTGTCCCATTTAACTGATCATTTTGTTCATTTCACACTTATTAAGAAAAAATGTACAAGTGAAAGAAAAAGAAAAATAGTTTTAAGTGTCTTGTCAAGTATTGGTGCATCCCTTCTTATCATAAATGCAAAGTAGAATATATTGAATTGTGAGTGATAAAAGTGTATTAATTAGAATTATAGCTGGAAAAAAGTAATTATCATTGTACTAAAAAGTGAAATGAGTCAAAAAAATTGGAATTTTTTTTTTTTTTTTTACAAATGACTCAGTTATTAAGGGAATGAGATAGTATTGCATTTATGATCTAAGTGTGTGCAAATTCTCAATGTCAAATAGATATTTGACGTTGGAAGGAACCTTTGGGCCAAAAAGGGAGAAGAGCAAGAAGCTGCCAACAAAGAATTCATAGATGTCCACAAATTGTTGGAGCAAGAATTGGGAGACAAAATTTATTATGGAGGAGATAAGCTTGGTTTTGTGGATGTAGCACTTATTCCATACTACACTTGGTTTAAAAGTTATGAAACCTTTGGTAAGATCAGTCTAGAGAAGGAATGCCCTAAGTTCATTGCTTGGGCCAATAGATGTATGCAGATTGAGAGTGTTTCAAAGTCTCTTCCTGATCAGGATAAGGTCCATGACTTAATTGTAGAGCTGAGGAAGATGAGTTATTAA
Protein sequence

>MS.gene062846.t1

MADEVILLNYWASPFGMSVRIALAEKGIKHEQKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESLIAVQYIDEVWNEKSPLLPSDPYQKSQSLFWADYIDKKIFDVGRNLWAKKGEEQEAANKEFIDVHKLLEQELGDKIYYGGDKLGFVDVALIPYYTWFKSYETFGKISLEKECPKFIAWANRCMQIESVSKSLPDQDKVHDLIVELRKMSY