Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062850.t1 | XP_013464346.1 | 92.7 | 219 | 16 | 0 | 1 | 219 | 1 | 219 | 6.50E-118 | 433.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062850.t1 | Q03666 | 68.8 | 218 | 67 | 1 | 3 | 219 | 4 | 221 | 1.6e-88 | 327.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062850.t1 | I3T074 | 92.7 | 219 | 16 | 0 | 1 | 219 | 1 | 219 | 4.7e-118 | 433.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062850.t1 | MTR_2g070130 | 92.694 | 219 | 16 | 0 | 1 | 219 | 1 | 219 | 4.87e-153 | 423 |
MS.gene062850.t1 | MTR_2g070180 | 81.308 | 214 | 40 | 0 | 1 | 214 | 1 | 214 | 2.16e-131 | 369 |
MS.gene062850.t1 | MTR_2g070150 | 84.804 | 204 | 31 | 0 | 1 | 204 | 1 | 204 | 2.71e-131 | 368 |
MS.gene062850.t1 | MTR_2g070140 | 80.788 | 203 | 39 | 0 | 17 | 219 | 1 | 203 | 8.56e-126 | 354 |
MS.gene062850.t1 | MTR_2g070210 | 68.778 | 221 | 67 | 1 | 1 | 219 | 1 | 221 | 7.32e-115 | 327 |
MS.gene062850.t1 | MTR_2g070200 | 68.326 | 221 | 68 | 2 | 1 | 219 | 1 | 221 | 1.08e-110 | 316 |
MS.gene062850.t1 | MTR_2g070060 | 60.274 | 219 | 87 | 0 | 1 | 219 | 1 | 219 | 1.60e-101 | 293 |
MS.gene062850.t1 | MTR_2g070070 | 60.274 | 219 | 87 | 0 | 1 | 219 | 1 | 219 | 2.43e-99 | 288 |
MS.gene062850.t1 | MTR_3g467420 | 60.465 | 215 | 85 | 0 | 5 | 219 | 10 | 224 | 5.42e-98 | 284 |
MS.gene062850.t1 | MTR_2g070110 | 58.904 | 219 | 89 | 1 | 1 | 219 | 1 | 218 | 1.17e-93 | 273 |
MS.gene062850.t1 | MTR_8g056940 | 60.185 | 216 | 86 | 0 | 1 | 216 | 1 | 216 | 1.42e-93 | 273 |
MS.gene062850.t1 | MTR_3g467430 | 58.065 | 217 | 91 | 0 | 3 | 219 | 8 | 224 | 2.43e-93 | 273 |
MS.gene062850.t1 | MTR_2g070120 | 60.664 | 211 | 83 | 0 | 1 | 211 | 1 | 211 | 6.55e-93 | 271 |
MS.gene062850.t1 | MTR_4g124130 | 56.818 | 220 | 94 | 1 | 1 | 219 | 1 | 220 | 1.01e-88 | 261 |
MS.gene062850.t1 | MTR_5g076900 | 48.858 | 219 | 110 | 2 | 2 | 219 | 4 | 221 | 2.49e-74 | 224 |
MS.gene062850.t1 | MTR_0186s0030 | 68.085 | 141 | 45 | 0 | 1 | 141 | 1 | 141 | 5.89e-64 | 195 |
MS.gene062850.t1 | MTR_1g090060 | 43.689 | 206 | 111 | 3 | 4 | 205 | 3 | 207 | 9.56e-52 | 167 |
MS.gene062850.t1 | MTR_8g087425 | 42.718 | 206 | 115 | 2 | 2 | 205 | 3 | 207 | 8.12e-51 | 164 |
MS.gene062850.t1 | MTR_5g037380 | 45.070 | 213 | 108 | 6 | 2 | 205 | 3 | 215 | 3.63e-49 | 160 |
MS.gene062850.t1 | MTR_3g099757 | 41.951 | 205 | 116 | 3 | 3 | 205 | 4 | 207 | 4.95e-49 | 160 |
MS.gene062850.t1 | MTR_5g040430 | 37.220 | 223 | 130 | 3 | 2 | 217 | 5 | 224 | 1.62e-48 | 159 |
MS.gene062850.t1 | MTR_8g087410 | 42.157 | 204 | 115 | 2 | 4 | 205 | 6 | 208 | 1.65e-48 | 159 |
MS.gene062850.t1 | MTR_7g065720 | 43.541 | 209 | 104 | 6 | 3 | 203 | 6 | 208 | 1.67e-48 | 159 |
MS.gene062850.t1 | MTR_4g019780 | 42.439 | 205 | 115 | 2 | 3 | 205 | 7 | 210 | 1.70e-48 | 158 |
MS.gene062850.t1 | MTR_4g059730 | 42.723 | 213 | 109 | 6 | 1 | 205 | 1 | 208 | 8.24e-48 | 156 |
MS.gene062850.t1 | MTR_7g065750 | 42.857 | 224 | 107 | 7 | 3 | 216 | 6 | 218 | 4.98e-47 | 155 |
MS.gene062850.t1 | MTR_7g065740 | 41.463 | 205 | 114 | 4 | 3 | 203 | 6 | 208 | 3.65e-46 | 152 |
MS.gene062850.t1 | MTR_7g065630 | 41.463 | 205 | 111 | 5 | 3 | 204 | 24 | 222 | 4.10e-46 | 153 |
MS.gene062850.t1 | MTR_4g019790 | 42.927 | 205 | 112 | 5 | 4 | 205 | 7 | 209 | 1.07e-45 | 151 |
MS.gene062850.t1 | MTR_6g080440 | 40.526 | 190 | 110 | 2 | 18 | 205 | 17 | 205 | 2.15e-45 | 150 |
MS.gene062850.t1 | MTR_1g090100 | 42.439 | 205 | 113 | 3 | 5 | 205 | 3 | 206 | 8.29e-45 | 149 |
MS.gene062850.t1 | MTR_7g065710 | 47.879 | 165 | 81 | 4 | 1 | 162 | 1 | 163 | 2.37e-44 | 148 |
MS.gene062850.t1 | MTR_1g090070 | 41.063 | 207 | 114 | 6 | 4 | 204 | 9 | 213 | 6.11e-44 | 147 |
MS.gene062850.t1 | MTR_1g090150 | 37.104 | 221 | 121 | 7 | 3 | 215 | 2 | 212 | 6.89e-44 | 147 |
MS.gene062850.t1 | MTR_7g065660 | 39.320 | 206 | 120 | 4 | 3 | 205 | 6 | 209 | 9.89e-44 | 146 |
MS.gene062850.t1 | MTR_8g061950 | 38.053 | 226 | 125 | 4 | 3 | 216 | 4 | 226 | 1.38e-43 | 146 |
MS.gene062850.t1 | MTR_7g065265 | 41.262 | 206 | 116 | 5 | 3 | 205 | 6 | 209 | 3.55e-43 | 145 |
MS.gene062850.t1 | MTR_7g065680 | 49.080 | 163 | 78 | 4 | 3 | 162 | 6 | 166 | 8.54e-43 | 144 |
MS.gene062850.t1 | MTR_1g115195 | 42.925 | 212 | 110 | 8 | 1 | 205 | 1 | 208 | 9.31e-43 | 144 |
MS.gene062850.t1 | MTR_1g090090 | 41.395 | 215 | 118 | 5 | 4 | 211 | 3 | 216 | 1.59e-42 | 143 |
MS.gene062850.t1 | MTR_7g065270 | 40.196 | 204 | 117 | 5 | 3 | 203 | 6 | 207 | 1.95e-42 | 143 |
MS.gene062850.t1 | MTR_7g065700 | 42.584 | 209 | 111 | 6 | 1 | 206 | 4 | 206 | 6.48e-42 | 142 |
MS.gene062850.t1 | MTR_7g065290 | 40.291 | 206 | 118 | 5 | 3 | 205 | 6 | 209 | 9.05e-42 | 141 |
MS.gene062850.t1 | MTR_7g065590 | 37.745 | 204 | 122 | 4 | 3 | 203 | 6 | 207 | 3.76e-41 | 140 |
MS.gene062850.t1 | MTR_7g065230 | 41.463 | 205 | 108 | 6 | 3 | 203 | 6 | 202 | 3.02e-40 | 137 |
MS.gene062850.t1 | MTR_7g065640 | 39.901 | 203 | 113 | 5 | 3 | 197 | 6 | 207 | 8.52e-40 | 135 |
MS.gene062850.t1 | MTR_7g065600 | 42.945 | 163 | 90 | 3 | 3 | 164 | 6 | 166 | 4.07e-38 | 132 |
MS.gene062850.t1 | MTR_7g065260 | 44.172 | 163 | 88 | 3 | 3 | 164 | 13 | 173 | 1.74e-36 | 128 |
MS.gene062850.t1 | MTR_2g072120 | 66.216 | 74 | 24 | 1 | 47 | 119 | 1 | 74 | 5.74e-31 | 109 |
MS.gene062850.t1 | MTR_1g067180 | 28.922 | 204 | 132 | 6 | 11 | 209 | 31 | 226 | 1.55e-11 | 62.0 |
MS.gene062850.t1 | MTR_1g067180 | 29.851 | 201 | 126 | 7 | 14 | 208 | 37 | 228 | 2.01e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062850.t1 | AT1G17180 | 63.927 | 219 | 79 | 0 | 1 | 219 | 1 | 219 | 4.85e-107 | 307 |
MS.gene062850.t1 | AT1G78380 | 63.426 | 216 | 79 | 0 | 1 | 216 | 1 | 216 | 8.31e-105 | 301 |
MS.gene062850.t1 | AT1G78340 | 62.963 | 216 | 80 | 0 | 1 | 216 | 1 | 216 | 3.42e-102 | 295 |
MS.gene062850.t1 | AT1G78320 | 63.551 | 214 | 78 | 0 | 1 | 214 | 1 | 214 | 2.66e-101 | 293 |
MS.gene062850.t1 | AT1G78370 | 62.617 | 214 | 80 | 0 | 1 | 214 | 1 | 214 | 1.88e-100 | 290 |
MS.gene062850.t1 | AT1G78360 | 61.818 | 220 | 83 | 1 | 1 | 219 | 1 | 220 | 5.70e-100 | 289 |
MS.gene062850.t1 | AT1G17170 | 60.274 | 219 | 86 | 1 | 1 | 219 | 1 | 218 | 1.71e-98 | 285 |
MS.gene062850.t1 | AT1G17190 | 56.744 | 215 | 93 | 0 | 3 | 217 | 4 | 218 | 1.15e-94 | 276 |
MS.gene062850.t1 | AT1G53680 | 52.968 | 219 | 101 | 2 | 3 | 219 | 6 | 224 | 6.38e-86 | 254 |
MS.gene062850.t1 | AT3G43800 | 54.545 | 220 | 96 | 3 | 3 | 218 | 4 | 223 | 3.47e-81 | 242 |
MS.gene062850.t1 | AT1G78320 | 56.098 | 205 | 63 | 1 | 1 | 205 | 1 | 178 | 7.61e-79 | 234 |
MS.gene062850.t1 | AT2G29420 | 43.902 | 205 | 112 | 3 | 2 | 204 | 7 | 210 | 6.01e-57 | 180 |
MS.gene062850.t1 | AT3G09270 | 43.836 | 219 | 115 | 6 | 3 | 217 | 5 | 219 | 1.77e-52 | 169 |
MS.gene062850.t1 | AT2G29490 | 41.262 | 206 | 115 | 4 | 3 | 204 | 6 | 209 | 4.32e-50 | 162 |
MS.gene062850.t1 | AT2G29480 | 40.777 | 206 | 116 | 4 | 3 | 204 | 6 | 209 | 9.55e-49 | 159 |
MS.gene062850.t1 | AT2G29440 | 40.777 | 206 | 116 | 4 | 3 | 204 | 5 | 208 | 3.06e-48 | 158 |
MS.gene062850.t1 | AT2G29460 | 40.777 | 206 | 116 | 4 | 3 | 204 | 6 | 209 | 3.71e-48 | 157 |
MS.gene062850.t1 | AT2G29450 | 41.063 | 207 | 115 | 5 | 3 | 204 | 5 | 209 | 9.72e-48 | 157 |
MS.gene062850.t1 | AT1G74590 | 36.652 | 221 | 128 | 5 | 3 | 216 | 6 | 221 | 3.81e-47 | 155 |
MS.gene062850.t1 | AT1G59700 | 41.364 | 220 | 120 | 5 | 3 | 213 | 5 | 224 | 5.40e-47 | 155 |
MS.gene062850.t1 | AT1G10360 | 40.183 | 219 | 123 | 4 | 2 | 212 | 3 | 221 | 8.20e-46 | 152 |
MS.gene062850.t1 | AT2G29470 | 40.000 | 205 | 116 | 5 | 5 | 204 | 8 | 210 | 2.87e-45 | 150 |
MS.gene062850.t1 | AT1G69930 | 38.462 | 208 | 121 | 3 | 5 | 205 | 13 | 220 | 1.11e-43 | 146 |
MS.gene062850.t1 | AT1G27140 | 39.631 | 217 | 121 | 4 | 3 | 209 | 5 | 221 | 2.25e-43 | 146 |
MS.gene062850.t1 | AT1G10370 | 39.535 | 215 | 122 | 4 | 2 | 208 | 3 | 217 | 8.80e-43 | 144 |
MS.gene062850.t1 | AT1G59670 | 40.090 | 222 | 124 | 5 | 3 | 215 | 5 | 226 | 2.71e-42 | 143 |
MS.gene062850.t1 | AT1G27130 | 36.283 | 226 | 132 | 5 | 3 | 219 | 5 | 227 | 1.94e-41 | 140 |
MS.gene062850.t1 | AT5G62480 | 35.000 | 220 | 131 | 4 | 1 | 209 | 5 | 223 | 5.44e-41 | 140 |
MS.gene062850.t1 | AT1G69920 | 36.638 | 232 | 113 | 6 | 5 | 216 | 35 | 252 | 3.42e-38 | 133 |
MS.gene062850.t1 | AT5G62480 | 28.636 | 220 | 119 | 5 | 1 | 209 | 5 | 197 | 4.69e-24 | 95.5 |
MS.gene062850.t1 | AT5G62480 | 28.636 | 220 | 118 | 5 | 1 | 209 | 5 | 196 | 5.67e-24 | 95.1 |
Find 48 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAATTAAAGATTCACAAAT+TGG | 0.245931 | 2.4:-25190314 | None:intergenic |
CCATTATACAATTGGTTTAG+AGG | 0.271694 | 2.4:+25191167 | MS.gene062850:CDS |
TTCAGTATATTGATGAAGTT+TGG | 0.281776 | 2.4:+25190339 | MS.gene062850:CDS |
AAGTGATTCTGCTTAATTAC+TGG | 0.295778 | 2.4:+25190138 | MS.gene062850:CDS |
TTCAATCTGCATGCATCTAT+TGG | 0.310100 | 2.4:-25191249 | None:intergenic |
GGGTTCATTTGTAACAATAA+AGG | 0.312810 | 2.4:-25190251 | None:intergenic |
ATGAAGCTGCAGGGAATCTT+TGG | 0.323805 | 2.4:+25191012 | MS.gene062850:CDS |
CCAATTGTATAATGGAATAA+AGG | 0.330882 | 2.4:-25191159 | None:intergenic |
CAAAATAGCCTTAGCTGAAA+AGG | 0.339349 | 2.4:+25190184 | MS.gene062850:CDS |
CTAGCTTGTGCTTTCTGATA+AGG | 0.347248 | 2.4:-25190392 | None:intergenic |
GGTTCATTTGTAACAATAAA+GGG | 0.348184 | 2.4:-25190250 | None:intergenic |
CCTCTAAACCAATTGTATAA+TGG | 0.353655 | 2.4:-25191167 | None:intergenic |
CCTTTATTCCATTATACAAT+TGG | 0.359711 | 2.4:+25191159 | MS.gene062850:CDS |
TCATGGATCTTATCCTGATC+AGG | 0.386076 | 2.4:-25191290 | None:intergenic |
TTACCATTATGAATGAGAAC+AGG | 0.397263 | 2.4:-25190290 | None:intergenic |
AGAAAGCACAAGCTAGATTC+TGG | 0.400529 | 2.4:+25190399 | MS.gene062850:CDS |
CATAGAAGTCCTCAAACTCT+TGG | 0.407928 | 2.4:+25191076 | MS.gene062850:CDS |
ACTCTTGCTCCAAGAGTTTG+AGG | 0.408401 | 2.4:-25191085 | None:intergenic |
GTGCCCTATGTTCAGTGCTT+GGG | 0.409888 | 2.4:+25191226 | MS.gene062850:CDS |
AATTACTGGCCAAGTCCATT+TGG | 0.414708 | 2.4:+25190152 | MS.gene062850:CDS |
ATCCCTGTTCTCATTCATAA+TGG | 0.420755 | 2.4:+25190287 | MS.gene062850:CDS |
GTGGAGCTCAAGAAGAAGTA+TGG | 0.423879 | 2.4:+25191320 | MS.gene062850:CDS |
AGTGCCCTATGTTCAGTGCT+TGG | 0.430370 | 2.4:+25191225 | MS.gene062850:CDS |
TTTAGAGGCTATGAGGCCTT+TGG | 0.433110 | 2.4:+25191182 | MS.gene062850:CDS |
TTCCAAGTCACTCCCTGATC+AGG | 0.451766 | 2.4:+25191277 | MS.gene062850:CDS |
AGTCTCATTCCAAATGGACT+TGG | 0.467374 | 2.4:-25190161 | None:intergenic |
AAATAGATCTATGAAGCTGC+AGG | 0.471190 | 2.4:+25191002 | MS.gene062850:intron |
AGTGGAAGAAGCTGCAAAGA+AGG | 0.471829 | 2.4:+25191049 | MS.gene062850:CDS |
CAAACTCTTGGAGCAAGAGT+TGG | 0.479261 | 2.4:+25191088 | MS.gene062850:CDS |
AAAATAGCCTTAGCTGAAAA+GGG | 0.480232 | 2.4:+25190185 | MS.gene062850:CDS |
GAAAGCACAAGCTAGATTCT+GGG | 0.487661 | 2.4:+25190400 | MS.gene062850:CDS |
AAACTCTTGGAGCAAGAGTT+GGG | 0.491382 | 2.4:+25191089 | MS.gene062850:CDS |
GGCTGATTATGTTGATAAGA+AGG | 0.507102 | 2.4:+25190421 | MS.gene062850:CDS |
CAATTGGTTTAGAGGCTATG+AGG | 0.508218 | 2.4:+25191175 | MS.gene062850:CDS |
TGGCCCAAGCACTGAACATA+GGG | 0.512745 | 2.4:-25191229 | None:intergenic |
TTGGCCCAAGCACTGAACAT+AGG | 0.523795 | 2.4:-25191230 | None:intergenic |
TGAGCTCCACAATCAAATCA+TGG | 0.537535 | 2.4:-25191307 | None:intergenic |
TAAGATCCATGATTTGATTG+TGG | 0.557919 | 2.4:+25191301 | MS.gene062850:CDS |
CATGGATCTTATCCTGATCA+GGG | 0.576720 | 2.4:-25191289 | None:intergenic |
GAAGAAGTATGGCTTTGAGT+AGG | 0.577171 | 2.4:+25191331 | MS.gene062850:CDS |
GCTTTCTGATAAGGATCAGA+AGG | 0.581675 | 2.4:-25190383 | None:intergenic |
CAGAATCACTTCATCAGCCA+TGG | 0.586532 | 2.4:-25190126 | None:intergenic |
GTCTACACTGATCTTGCCAA+AGG | 0.602126 | 2.4:-25191198 | None:intergenic |
TACCATTATGAATGAGAACA+GGG | 0.607264 | 2.4:-25190289 | None:intergenic |
TGGCAAGATCAGTGTAGACA+AGG | 0.634237 | 2.4:+25191202 | MS.gene062850:CDS |
ATCCTGATCAGGGAGTGACT+TGG | 0.640797 | 2.4:-25191279 | None:intergenic |
TAAGGATCAGAAGGTAACAA+AGG | 0.642669 | 2.4:-25190374 | None:intergenic |
AATAGATCTATGAAGCTGCA+GGG | 0.643436 | 2.4:+25191003 | MS.gene062850:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAGATTATAGCTTAA+TGG | + | chr2.4:25190733-25190752 | MS.gene062850:intron | 15.0% |
!! | TAAACTCTTAAATAGAAATA+AGG | - | chr2.4:25190669-25190688 | None:intergenic | 15.0% |
!!! | TCTATTTTCATAAATTATCA+AGG | - | chr2.4:25190709-25190728 | None:intergenic | 15.0% |
!!! | TGTATCTCAATTAAGAATTT+TGG | + | chr2.4:25190882-25190901 | MS.gene062850:intron | 20.0% |
!!! | TTTTGCATTTTTAGTATGAA+GGG | + | chr2.4:25190560-25190579 | MS.gene062850:intron | 20.0% |
! | ATAAAACTTTCATCAACAAG+AGG | - | chr2.4:25190538-25190557 | None:intergenic | 25.0% |
! | CCTTTATTCCATTATACAAT+TGG | + | chr2.4:25191159-25191178 | MS.gene062850:CDS | 25.0% |
! | GCAATTAAAGATTCACAAAT+TGG | - | chr2.4:25190317-25190336 | None:intergenic | 25.0% |
! | GCATGCTAAAAATATCAAAT+GGG | - | chr2.4:25190929-25190948 | None:intergenic | 25.0% |
! | GGTTCATTTGTAACAATAAA+GGG | - | chr2.4:25190253-25190272 | None:intergenic | 25.0% |
! | GTCATTATTAGCAAATAACA+TGG | + | chr2.4:25190952-25190971 | MS.gene062850:intron | 25.0% |
! | TGCATGCTAAAAATATCAAA+TGG | - | chr2.4:25190930-25190949 | None:intergenic | 25.0% |
! | TTCAGTATATTGATGAAGTT+TGG | + | chr2.4:25190339-25190358 | MS.gene062850:CDS | 25.0% |
!! | CCAATTGTATAATGGAATAA+AGG | - | chr2.4:25191162-25191181 | None:intergenic | 25.0% |
!! | TTTCTGAAAAGTTTAGAAGT+TGG | + | chr2.4:25190827-25190846 | MS.gene062850:intron | 25.0% |
!!! | ATTTTGGAGATAATTCATGT+TGG | + | chr2.4:25190898-25190917 | MS.gene062850:intron | 25.0% |
!!! | CTTTTGCATTTTTAGTATGA+AGG | + | chr2.4:25190559-25190578 | MS.gene062850:intron | 25.0% |
!!! | GGTTATAGTTTGTTTATCAT+TGG | + | chr2.4:25190495-25190514 | MS.gene062850:intron | 25.0% |
!!! | TTTTGGAGATAATTCATGTT+GGG | + | chr2.4:25190899-25190918 | MS.gene062850:intron | 25.0% |
AAGTGATTCTGCTTAATTAC+TGG | + | chr2.4:25190138-25190157 | MS.gene062850:CDS | 30.0% | |
CCTCTAAACCAATTGTATAA+TGG | - | chr2.4:25191170-25191189 | None:intergenic | 30.0% | |
GGGTTCATTTGTAACAATAA+AGG | - | chr2.4:25190254-25190273 | None:intergenic | 30.0% | |
TAAGATCCATGATTTGATTG+TGG | + | chr2.4:25191301-25191320 | MS.gene062850:CDS | 30.0% | |
TACCATTATGAATGAGAACA+GGG | - | chr2.4:25190292-25190311 | None:intergenic | 30.0% | |
TATTGCATGTGATTGTTTGT+TGG | + | chr2.4:25190474-25190493 | MS.gene062850:intron | 30.0% | |
TTACCATTATGAATGAGAAC+AGG | - | chr2.4:25190293-25190312 | None:intergenic | 30.0% | |
! | AAAATAGCCTTAGCTGAAAA+GGG | + | chr2.4:25190185-25190204 | MS.gene062850:CDS | 30.0% |
! | CCATTATACAATTGGTTTAG+AGG | + | chr2.4:25191167-25191186 | MS.gene062850:CDS | 30.0% |
!! | ATTTTGAGTCTCATTCCAAA+TGG | - | chr2.4:25190170-25190189 | None:intergenic | 30.0% |
!!! | TTGGGAGACAAGAATTTTTT+TGG | + | chr2.4:25191107-25191126 | MS.gene062850:CDS | 30.0% |
AAATAGATCTATGAAGCTGC+AGG | + | chr2.4:25191002-25191021 | MS.gene062850:intron | 35.0% | |
AATAGATCTATGAAGCTGCA+GGG | + | chr2.4:25191003-25191022 | MS.gene062850:intron | 35.0% | |
ATCCCTGTTCTCATTCATAA+TGG | + | chr2.4:25190287-25190306 | MS.gene062850:CDS | 35.0% | |
TAAGGATCAGAAGGTAACAA+AGG | - | chr2.4:25190377-25190396 | None:intergenic | 35.0% | |
TTCAATCTGCATGCATCTAT+TGG | - | chr2.4:25191252-25191271 | None:intergenic | 35.0% | |
TTCATCAACAAGAGGCAAAA+GGG | - | chr2.4:25190530-25190549 | None:intergenic | 35.0% | |
TTTCATCAACAAGAGGCAAA+AGG | - | chr2.4:25190531-25190550 | None:intergenic | 35.0% | |
! | ACAGGGATTTTCTTATGAAC+AGG | - | chr2.4:25190275-25190294 | None:intergenic | 35.0% |
! | CAAAATAGCCTTAGCTGAAA+AGG | + | chr2.4:25190184-25190203 | MS.gene062850:CDS | 35.0% |
! | CAGGGATTTTCTTATGAACA+GGG | - | chr2.4:25190274-25190293 | None:intergenic | 35.0% |
! | GGCTGATTATGTTGATAAGA+AGG | + | chr2.4:25190421-25190440 | MS.gene062850:CDS | 35.0% |
!!! | GGAGACAAGAATTTTTTTGG+AGG | + | chr2.4:25191110-25191129 | MS.gene062850:CDS | 35.0% |
!!! | TTCTTCCACTTCTCCTTTTT+TGG | - | chr2.4:25191039-25191058 | None:intergenic | 35.0% |
AAACTCTTGGAGCAAGAGTT+GGG | + | chr2.4:25191089-25191108 | MS.gene062850:CDS | 40.0% | |
AATTACTGGCCAAGTCCATT+TGG | + | chr2.4:25190152-25190171 | MS.gene062850:CDS | 40.0% | |
CATAGAAGTCCTCAAACTCT+TGG | + | chr2.4:25191076-25191095 | MS.gene062850:CDS | 40.0% | |
CATGGATCTTATCCTGATCA+GGG | - | chr2.4:25191292-25191311 | None:intergenic | 40.0% | |
GCTTTCTGATAAGGATCAGA+AGG | - | chr2.4:25190386-25190405 | None:intergenic | 40.0% | |
GGGAATCTTTGGACCAAAAA+AGG | + | chr2.4:25191023-25191042 | MS.gene062850:CDS | 40.0% | |
TCATGGATCTTATCCTGATC+AGG | - | chr2.4:25191293-25191312 | None:intergenic | 40.0% | |
TGAGCTCCACAATCAAATCA+TGG | - | chr2.4:25191310-25191329 | None:intergenic | 40.0% | |
TTGGACCAAAAAAGGAGAAG+TGG | + | chr2.4:25191031-25191050 | MS.gene062850:CDS | 40.0% | |
! | AGAAAGCACAAGCTAGATTC+TGG | + | chr2.4:25190399-25190418 | MS.gene062850:CDS | 40.0% |
! | AGTCTCATTCCAAATGGACT+TGG | - | chr2.4:25190164-25190183 | None:intergenic | 40.0% |
! | CAATTGGTTTAGAGGCTATG+AGG | + | chr2.4:25191175-25191194 | MS.gene062850:CDS | 40.0% |
! | CTAGCTTGTGCTTTCTGATA+AGG | - | chr2.4:25190395-25190414 | None:intergenic | 40.0% |
! | CTTGATACCCTTTTCAGCTA+AGG | - | chr2.4:25190195-25190214 | None:intergenic | 40.0% |
! | GAAAGCACAAGCTAGATTCT+GGG | + | chr2.4:25190400-25190419 | MS.gene062850:CDS | 40.0% |
!!! | TTTTTTGGAGGAGACAAGCT+TGG | + | chr2.4:25191122-25191141 | MS.gene062850:CDS | 40.0% |
ACTCTTGCTCCAAGAGTTTG+AGG | - | chr2.4:25191088-25191107 | None:intergenic | 45.0% | |
AGTGGAAGAAGCTGCAAAGA+AGG | + | chr2.4:25191049-25191068 | MS.gene062850:CDS | 45.0% | |
ATGAAGCTGCAGGGAATCTT+TGG | + | chr2.4:25191012-25191031 | MS.gene062850:CDS | 45.0% | |
CAAACTCTTGGAGCAAGAGT+TGG | + | chr2.4:25191088-25191107 | MS.gene062850:CDS | 45.0% | |
GTCTACACTGATCTTGCCAA+AGG | - | chr2.4:25191201-25191220 | None:intergenic | 45.0% | |
GTGGAGCTCAAGAAGAAGTA+TGG | + | chr2.4:25191320-25191339 | MS.gene062850:CDS | 45.0% | |
TGGCAAGATCAGTGTAGACA+AGG | + | chr2.4:25191202-25191221 | MS.gene062850:CDS | 45.0% | |
TTTAGAGGCTATGAGGCCTT+TGG | + | chr2.4:25191182-25191201 | MS.gene062850:CDS | 45.0% | |
AGTGCCCTATGTTCAGTGCT+TGG | + | chr2.4:25191225-25191244 | MS.gene062850:CDS | 50.0% | |
ATCCTGATCAGGGAGTGACT+TGG | - | chr2.4:25191282-25191301 | None:intergenic | 50.0% | |
GTGCCCTATGTTCAGTGCTT+GGG | + | chr2.4:25191226-25191245 | MS.gene062850:CDS | 50.0% | |
TTCCAAGTCACTCCCTGATC+AGG | + | chr2.4:25191277-25191296 | MS.gene062850:CDS | 50.0% | |
!! | TGGCCCAAGCACTGAACATA+GGG | - | chr2.4:25191232-25191251 | None:intergenic | 50.0% |
!! | TTGGCCCAAGCACTGAACAT+AGG | - | chr2.4:25191233-25191252 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 25190128 | 25191352 | 25190128 | ID=MS.gene062850 |
chr2.4 | mRNA | 25190128 | 25191352 | 25190128 | ID=MS.gene062850.t1;Parent=MS.gene062850 |
chr2.4 | exon | 25190128 | 25190442 | 25190128 | ID=MS.gene062850.t1.exon1;Parent=MS.gene062850.t1 |
chr2.4 | CDS | 25190128 | 25190442 | 25190128 | ID=cds.MS.gene062850.t1;Parent=MS.gene062850.t1 |
chr2.4 | exon | 25191008 | 25191352 | 25191008 | ID=MS.gene062850.t1.exon2;Parent=MS.gene062850.t1 |
chr2.4 | CDS | 25191008 | 25191352 | 25191008 | ID=cds.MS.gene062850.t1;Parent=MS.gene062850.t1 |
Gene Sequence |
Protein sequence |