Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065582.t1 | XP_013464343.1 | 96.3 | 219 | 8 | 0 | 1 | 219 | 1 | 219 | 3.70E-121 | 444.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065582.t1 | P46417 | 82.4 | 216 | 38 | 0 | 1 | 216 | 1 | 216 | 1.4e-105 | 383.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065582.t1 | B7FGX5 | 96.3 | 219 | 8 | 0 | 1 | 219 | 1 | 219 | 2.7e-121 | 444.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065582.t1 | MTR_2g070070 | 96.347 | 219 | 8 | 0 | 1 | 219 | 1 | 219 | 1.84e-160 | 442 |
MS.gene065582.t1 | MTR_2g070060 | 87.215 | 219 | 28 | 0 | 1 | 219 | 1 | 219 | 2.11e-144 | 401 |
MS.gene065582.t1 | MTR_2g070110 | 87.215 | 219 | 27 | 1 | 1 | 219 | 1 | 218 | 9.30e-134 | 375 |
MS.gene065582.t1 | MTR_2g070180 | 66.355 | 214 | 72 | 0 | 1 | 214 | 1 | 214 | 7.80e-112 | 319 |
MS.gene065582.t1 | MTR_2g070150 | 69.118 | 204 | 63 | 0 | 1 | 204 | 1 | 204 | 1.08e-110 | 316 |
MS.gene065582.t1 | MTR_2g070140 | 66.502 | 203 | 68 | 0 | 17 | 219 | 1 | 203 | 1.33e-107 | 308 |
MS.gene065582.t1 | MTR_2g070130 | 62.557 | 219 | 82 | 0 | 1 | 219 | 1 | 219 | 2.61e-107 | 308 |
MS.gene065582.t1 | MTR_8g056940 | 65.753 | 219 | 75 | 0 | 1 | 219 | 1 | 219 | 6.34e-107 | 306 |
MS.gene065582.t1 | MTR_2g070210 | 62.443 | 221 | 81 | 1 | 1 | 219 | 1 | 221 | 3.73e-104 | 300 |
MS.gene065582.t1 | MTR_2g070200 | 61.818 | 220 | 82 | 2 | 1 | 218 | 1 | 220 | 3.50e-102 | 295 |
MS.gene065582.t1 | MTR_4g124130 | 62.273 | 220 | 82 | 1 | 1 | 219 | 1 | 220 | 1.33e-100 | 291 |
MS.gene065582.t1 | MTR_3g467420 | 60.930 | 215 | 84 | 0 | 5 | 219 | 10 | 224 | 1.57e-100 | 291 |
MS.gene065582.t1 | MTR_3g467430 | 60.465 | 215 | 85 | 0 | 5 | 219 | 10 | 224 | 3.30e-97 | 282 |
MS.gene065582.t1 | MTR_2g070120 | 57.416 | 209 | 89 | 0 | 1 | 209 | 1 | 209 | 8.00e-88 | 258 |
MS.gene065582.t1 | MTR_5g076900 | 53.881 | 219 | 99 | 2 | 2 | 219 | 4 | 221 | 5.48e-81 | 241 |
MS.gene065582.t1 | MTR_0186s0030 | 67.376 | 141 | 46 | 0 | 1 | 141 | 1 | 141 | 3.83e-66 | 201 |
MS.gene065582.t1 | MTR_5g037380 | 42.478 | 226 | 120 | 5 | 1 | 216 | 1 | 226 | 8.68e-52 | 167 |
MS.gene065582.t1 | MTR_5g040430 | 36.771 | 223 | 131 | 3 | 2 | 217 | 5 | 224 | 2.25e-49 | 160 |
MS.gene065582.t1 | MTR_8g087425 | 41.148 | 209 | 118 | 3 | 2 | 206 | 3 | 210 | 3.87e-47 | 155 |
MS.gene065582.t1 | MTR_1g090060 | 41.784 | 213 | 115 | 4 | 3 | 209 | 2 | 211 | 4.74e-47 | 155 |
MS.gene065582.t1 | MTR_4g019780 | 39.535 | 215 | 121 | 5 | 1 | 208 | 1 | 213 | 6.19e-47 | 154 |
MS.gene065582.t1 | MTR_7g065660 | 42.056 | 214 | 116 | 5 | 1 | 208 | 1 | 212 | 1.16e-45 | 151 |
MS.gene065582.t1 | MTR_4g019790 | 42.654 | 211 | 116 | 4 | 4 | 211 | 7 | 215 | 1.31e-45 | 151 |
MS.gene065582.t1 | MTR_7g065630 | 38.710 | 217 | 124 | 5 | 4 | 217 | 25 | 235 | 3.67e-45 | 150 |
MS.gene065582.t1 | MTR_7g065720 | 39.462 | 223 | 126 | 5 | 1 | 216 | 1 | 221 | 9.80e-45 | 149 |
MS.gene065582.t1 | MTR_8g087410 | 40.865 | 208 | 116 | 5 | 4 | 206 | 6 | 211 | 1.18e-44 | 149 |
MS.gene065582.t1 | MTR_1g090070 | 40.845 | 213 | 118 | 5 | 3 | 209 | 8 | 218 | 2.14e-44 | 148 |
MS.gene065582.t1 | MTR_7g065750 | 42.289 | 201 | 110 | 4 | 4 | 200 | 7 | 205 | 8.56e-44 | 146 |
MS.gene065582.t1 | MTR_4g059730 | 40.183 | 219 | 120 | 6 | 1 | 212 | 1 | 215 | 5.27e-43 | 144 |
MS.gene065582.t1 | MTR_7g065710 | 38.863 | 211 | 120 | 5 | 1 | 208 | 1 | 205 | 1.35e-42 | 143 |
MS.gene065582.t1 | MTR_7g065740 | 39.535 | 215 | 121 | 5 | 1 | 208 | 1 | 213 | 2.13e-42 | 143 |
MS.gene065582.t1 | MTR_6g080440 | 38.462 | 208 | 123 | 4 | 4 | 208 | 3 | 208 | 2.46e-42 | 142 |
MS.gene065582.t1 | MTR_1g090100 | 42.079 | 202 | 112 | 3 | 11 | 208 | 9 | 209 | 5.41e-42 | 142 |
MS.gene065582.t1 | MTR_8g061950 | 38.222 | 225 | 126 | 5 | 3 | 218 | 4 | 224 | 6.97e-42 | 142 |
MS.gene065582.t1 | MTR_7g065590 | 38.426 | 216 | 128 | 4 | 4 | 216 | 7 | 220 | 1.92e-41 | 140 |
MS.gene065582.t1 | MTR_3g099757 | 38.785 | 214 | 128 | 3 | 5 | 216 | 6 | 218 | 3.26e-40 | 137 |
MS.gene065582.t1 | MTR_7g065230 | 42.000 | 200 | 106 | 5 | 4 | 200 | 7 | 199 | 1.28e-39 | 135 |
MS.gene065582.t1 | MTR_7g065265 | 39.904 | 208 | 120 | 4 | 4 | 208 | 7 | 212 | 1.40e-39 | 135 |
MS.gene065582.t1 | MTR_1g090150 | 37.387 | 222 | 123 | 6 | 4 | 216 | 3 | 217 | 1.53e-39 | 135 |
MS.gene065582.t1 | MTR_2g072120 | 84.507 | 71 | 11 | 0 | 47 | 117 | 1 | 71 | 1.55e-39 | 130 |
MS.gene065582.t1 | MTR_7g065270 | 40.500 | 200 | 114 | 4 | 4 | 200 | 7 | 204 | 2.59e-39 | 135 |
MS.gene065582.t1 | MTR_7g065680 | 37.327 | 217 | 127 | 5 | 4 | 217 | 7 | 217 | 3.16e-39 | 135 |
MS.gene065582.t1 | MTR_7g065600 | 40.201 | 199 | 114 | 4 | 5 | 200 | 8 | 204 | 1.25e-38 | 133 |
MS.gene065582.t1 | MTR_1g090090 | 39.524 | 210 | 122 | 4 | 3 | 208 | 2 | 210 | 1.34e-38 | 133 |
MS.gene065582.t1 | MTR_7g065290 | 39.423 | 208 | 121 | 4 | 4 | 208 | 7 | 212 | 8.28e-38 | 131 |
MS.gene065582.t1 | MTR_7g065640 | 38.863 | 211 | 109 | 5 | 1 | 208 | 1 | 194 | 9.67e-38 | 130 |
MS.gene065582.t1 | MTR_7g065700 | 39.320 | 206 | 120 | 5 | 4 | 208 | 7 | 208 | 2.15e-37 | 130 |
MS.gene065582.t1 | MTR_1g115195 | 36.667 | 210 | 123 | 5 | 3 | 205 | 2 | 208 | 7.28e-36 | 126 |
MS.gene065582.t1 | MTR_7g065260 | 38.725 | 204 | 120 | 4 | 4 | 204 | 14 | 215 | 1.50e-33 | 120 |
MS.gene065582.t1 | MTR_5g037390 | 43.182 | 88 | 48 | 2 | 28 | 113 | 11 | 98 | 3.57e-14 | 66.2 |
MS.gene065582.t1 | MTR_4g043640 | 52.830 | 53 | 21 | 1 | 137 | 189 | 37 | 85 | 9.17e-14 | 64.7 |
MS.gene065582.t1 | MTR_1g110250 | 56.364 | 55 | 5 | 1 | 52 | 106 | 5 | 40 | 1.63e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065582.t1 | AT1G78380 | 68.224 | 214 | 68 | 0 | 1 | 214 | 1 | 214 | 2.37e-110 | 315 |
MS.gene065582.t1 | AT1G17180 | 64.840 | 219 | 77 | 0 | 1 | 219 | 1 | 219 | 9.54e-110 | 314 |
MS.gene065582.t1 | AT1G17170 | 63.470 | 219 | 79 | 1 | 1 | 219 | 1 | 218 | 5.09e-103 | 297 |
MS.gene065582.t1 | AT1G78340 | 63.551 | 214 | 78 | 0 | 1 | 214 | 1 | 214 | 1.17e-102 | 296 |
MS.gene065582.t1 | AT1G78370 | 62.791 | 215 | 80 | 0 | 1 | 215 | 1 | 215 | 1.70e-102 | 295 |
MS.gene065582.t1 | AT1G78360 | 62.727 | 220 | 81 | 1 | 1 | 219 | 1 | 220 | 4.73e-100 | 289 |
MS.gene065582.t1 | AT1G78320 | 62.273 | 220 | 82 | 1 | 1 | 219 | 1 | 220 | 1.28e-98 | 286 |
MS.gene065582.t1 | AT1G17190 | 60.748 | 214 | 84 | 0 | 4 | 217 | 5 | 218 | 3.62e-96 | 280 |
MS.gene065582.t1 | AT1G53680 | 55.708 | 219 | 95 | 2 | 3 | 219 | 6 | 224 | 4.88e-90 | 264 |
MS.gene065582.t1 | AT3G43800 | 53.241 | 216 | 97 | 3 | 4 | 215 | 5 | 220 | 1.89e-80 | 240 |
MS.gene065582.t1 | AT1G78320 | 53.182 | 220 | 75 | 2 | 1 | 219 | 1 | 193 | 9.96e-77 | 229 |
MS.gene065582.t1 | AT1G10360 | 42.661 | 218 | 116 | 5 | 1 | 209 | 1 | 218 | 1.54e-53 | 171 |
MS.gene065582.t1 | AT1G59700 | 44.495 | 218 | 106 | 5 | 4 | 209 | 6 | 220 | 4.89e-51 | 165 |
MS.gene065582.t1 | AT2G29420 | 42.857 | 203 | 113 | 3 | 2 | 202 | 7 | 208 | 2.16e-50 | 164 |
MS.gene065582.t1 | AT1G10370 | 41.553 | 219 | 114 | 5 | 2 | 209 | 3 | 218 | 1.87e-49 | 161 |
MS.gene065582.t1 | AT3G09270 | 41.706 | 211 | 120 | 2 | 5 | 212 | 7 | 217 | 7.31e-49 | 159 |
MS.gene065582.t1 | AT1G74590 | 41.969 | 193 | 106 | 3 | 3 | 189 | 6 | 198 | 8.76e-47 | 154 |
MS.gene065582.t1 | AT1G59670 | 44.495 | 218 | 106 | 5 | 4 | 209 | 6 | 220 | 1.78e-46 | 154 |
MS.gene065582.t1 | AT2G29490 | 39.070 | 215 | 127 | 2 | 5 | 216 | 8 | 221 | 3.98e-45 | 150 |
MS.gene065582.t1 | AT2G29480 | 42.439 | 205 | 110 | 6 | 5 | 204 | 8 | 209 | 1.76e-43 | 145 |
MS.gene065582.t1 | AT2G29450 | 48.171 | 164 | 74 | 4 | 4 | 160 | 6 | 165 | 1.79e-43 | 145 |
MS.gene065582.t1 | AT1G69930 | 40.094 | 212 | 120 | 3 | 5 | 209 | 13 | 224 | 3.12e-43 | 145 |
MS.gene065582.t1 | AT2G29440 | 39.819 | 221 | 119 | 6 | 4 | 216 | 6 | 220 | 1.35e-42 | 143 |
MS.gene065582.t1 | AT2G29460 | 42.079 | 202 | 109 | 6 | 4 | 200 | 7 | 205 | 3.47e-42 | 142 |
MS.gene065582.t1 | AT2G29470 | 39.512 | 205 | 117 | 5 | 5 | 204 | 8 | 210 | 1.96e-41 | 140 |
MS.gene065582.t1 | AT1G27130 | 38.710 | 217 | 118 | 5 | 5 | 209 | 7 | 220 | 5.02e-41 | 139 |
MS.gene065582.t1 | AT1G27140 | 40.000 | 205 | 113 | 4 | 15 | 209 | 17 | 221 | 8.22e-40 | 137 |
MS.gene065582.t1 | AT5G62480 | 33.778 | 225 | 137 | 5 | 1 | 214 | 5 | 228 | 1.10e-38 | 134 |
MS.gene065582.t1 | AT1G69920 | 36.239 | 218 | 126 | 5 | 3 | 209 | 33 | 248 | 1.50e-37 | 131 |
MS.gene065582.t1 | AT5G62480 | 30.601 | 183 | 93 | 4 | 1 | 175 | 5 | 161 | 1.18e-21 | 89.4 |
MS.gene065582.t1 | AT5G62480 | 30.601 | 183 | 92 | 4 | 1 | 175 | 5 | 160 | 1.25e-21 | 89.0 |
Find 42 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGAGCTCAAGCTAGATTT+TGG | 0.158333 | 2.2:-21901242 | MS.gene065582:CDS |
GGTTGATTATATTGATAAAA+AGG | 0.180064 | 2.2:-21901220 | MS.gene065582:intron |
GCATAAAACCAGCTGTAAAA+AGG | 0.236430 | 2.2:+21900438 | None:intergenic |
ACTGGAATCTTCTTATGAAT+TGG | 0.280289 | 2.2:+21901369 | None:intergenic |
CATGAAGAAAACACTTGGTT+TGG | 0.291507 | 2.2:-21900280 | MS.gene065582:CDS |
TTGGCCCATGCCATGAGTTT+AGG | 0.302586 | 2.2:+21900375 | None:intergenic |
GACATATGGTAACTTTAAAA+TGG | 0.308392 | 2.2:-21900409 | MS.gene065582:CDS |
ATAATAGCAGATTCACAAAT+AGG | 0.318491 | 2.2:+21901327 | None:intergenic |
ATTCCAGTTCTTATCCATAA+TGG | 0.326052 | 2.2:-21901354 | MS.gene065582:CDS |
CTCTTTCTCCAAGCATCTCT+TGG | 0.337061 | 2.2:+21900356 | None:intergenic |
GCATGTTTGGTATGAGGGTT+AGG | 0.357139 | 2.2:-21901476 | MS.gene065582:CDS |
AAGACACTAGAGGAAACTTT+AGG | 0.363941 | 2.2:-21900516 | MS.gene065582:CDS |
GATACATGGGTTAGCATGTT+TGG | 0.366179 | 2.2:-21901489 | MS.gene065582:CDS |
GGGTTAGCATGTTTGGTATG+AGG | 0.382340 | 2.2:-21901482 | MS.gene065582:CDS |
AAAGTGGTACCACCGTAAAA+AGG | 0.389095 | 2.2:+21900486 | None:intergenic |
TGCAGTATATAGATGAGGTT+TGG | 0.397013 | 2.2:-21901302 | MS.gene065582:CDS |
TTTCCATTATGGATAAGAAC+TGG | 0.403729 | 2.2:+21901351 | None:intergenic |
TAGGATTGCATTAGCTGAAA+AGG | 0.411738 | 2.2:-21901457 | MS.gene065582:CDS |
TCATACACCTTCATTTGATC+AGG | 0.418180 | 2.2:+21900315 | None:intergenic |
TAAGGATCAGAAGGCATGAT+TGG | 0.432768 | 2.2:+21901267 | None:intergenic |
AGGAAAATGTGGCTTTCAAA+AGG | 0.453535 | 2.2:-21900582 | MS.gene065582:CDS |
CTAGCTTGAGCTCTCTCATA+AGG | 0.462092 | 2.2:+21901249 | None:intergenic |
GGTTAGCATGTTTGGTATGA+GGG | 0.470680 | 2.2:-21901481 | MS.gene065582:CDS |
GAATGCAGGTGTATGATACT+TGG | 0.479419 | 2.2:-21900605 | MS.gene065582:intron |
AACTCTTCCTGATCAAATGA+AGG | 0.495473 | 2.2:-21900322 | MS.gene065582:CDS |
AGGATTGCATTAGCTGAAAA+GGG | 0.508267 | 2.2:-21901456 | MS.gene065582:CDS |
TGGTAACTTTAAAATGGAAG+TGG | 0.524339 | 2.2:-21900403 | MS.gene065582:CDS |
GGATTCATCTGAAGAAGTAA+AGG | 0.531810 | 2.2:+21901390 | None:intergenic |
GGCATGGGCCAAGAGATGCT+TGG | 0.556159 | 2.2:-21900364 | MS.gene065582:CDS |
AGTGTCCTAAACTCATGGCA+TGG | 0.566508 | 2.2:-21900380 | MS.gene065582:CDS |
GTGTCCTAAACTCATGGCAT+GGG | 0.573616 | 2.2:-21900379 | MS.gene065582:CDS |
AATGTCAAGAAACCCAAAAG+TGG | 0.577947 | 2.2:+21900470 | None:intergenic |
AAAGGTGAAGAGCATGAGGA+AGG | 0.578570 | 2.2:-21900564 | MS.gene065582:CDS |
AAGGTGAAGAGCATGAGGAA+GGG | 0.585110 | 2.2:-21900563 | MS.gene065582:CDS |
AGTGGAGTGTCCTAAACTCA+TGG | 0.598325 | 2.2:-21900385 | MS.gene065582:CDS |
GCTCTCTCATAAGGATCAGA+AGG | 0.599368 | 2.2:+21901258 | None:intergenic |
TATTGTGCAGTATATAGATG+AGG | 0.609499 | 2.2:-21901307 | MS.gene065582:CDS |
GTGAGCATGAAGAAAACACT+TGG | 0.623270 | 2.2:-21900285 | MS.gene065582:CDS |
TTCAAAAGGTGAAGAGCATG+AGG | 0.635141 | 2.2:-21900568 | MS.gene065582:CDS |
ATGATACTTGGAGGAAAATG+TGG | 0.639144 | 2.2:-21900593 | MS.gene065582:CDS |
CCCTACAATCATGGCAACAG+AGG | 0.647548 | 2.2:-21901523 | None:intergenic |
TGCAGGTGTATGATACTTGG+AGG | 0.666737 | 2.2:-21900602 | MS.gene065582:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAATATAGATTGTTATATT+TGG | + | chr2.2:21901011-21901030 | None:intergenic | 15.0% |
!!! | TATATTTTCATCCTTAATTT+TGG | - | chr2.2:21900616-21900635 | MS.gene065582:intron | 15.0% |
!! | GGTTGATTATATTGATAAAA+AGG | - | chr2.2:21900568-21900587 | MS.gene065582:CDS | 20.0% |
!! | TAATTCTTCATGATTAACAT+TGG | - | chr2.2:21900686-21900705 | MS.gene065582:intron | 20.0% |
!! | TTTAATAAGATTCAAGTACT+AGG | + | chr2.2:21900762-21900781 | None:intergenic | 20.0% |
!!! | TACGTCTTATTTTTATAAGA+CGG | - | chr2.2:21900944-21900963 | MS.gene065582:intron | 20.0% |
! | AACTTTAAATCCTCTCATAA+CGG | - | chr2.2:21900970-21900989 | MS.gene065582:intron | 25.0% |
! | ATAATAGCAGATTCACAAAT+AGG | + | chr2.2:21900464-21900483 | None:intergenic | 25.0% |
! | ATGATCAAAGAATGATTATG+TGG | + | chr2.2:21901124-21901143 | None:intergenic | 25.0% |
!! | ATTTTCATCCTTAATTTTGG+TGG | - | chr2.2:21900619-21900638 | MS.gene065582:intron | 25.0% |
!! | GACATATGGTAACTTTAAAA+TGG | - | chr2.2:21901379-21901398 | MS.gene065582:CDS | 25.0% |
!! | TTTTATGCTTATGAGACATA+TGG | - | chr2.2:21901365-21901384 | MS.gene065582:CDS | 25.0% |
!!! | TTTTCATCCTTAATTTTGGT+GGG | - | chr2.2:21900620-21900639 | MS.gene065582:intron | 25.0% |
AAAGCACACAAATTACCAAA+AGG | + | chr2.2:21900732-21900751 | None:intergenic | 30.0% | |
ACTGGAATCTTCTTATGAAT+TGG | + | chr2.2:21900422-21900441 | None:intergenic | 30.0% | |
ATCAAAACCCACCAAAATTA+AGG | + | chr2.2:21900630-21900649 | None:intergenic | 30.0% | |
ATTCCAGTTCTTATCCATAA+TGG | - | chr2.2:21900434-21900453 | MS.gene065582:CDS | 30.0% | |
CATAAAACCAGCTGTAAAAA+GGG | + | chr2.2:21901352-21901371 | None:intergenic | 30.0% | |
TATTGTGCAGTATATAGATG+AGG | - | chr2.2:21900481-21900500 | MS.gene065582:CDS | 30.0% | |
TTTCCATTATGGATAAGAAC+TGG | + | chr2.2:21900440-21900459 | None:intergenic | 30.0% | |
! | CACAAATAGGTTTTCCATTA+TGG | + | chr2.2:21900451-21900470 | None:intergenic | 30.0% |
! | GATTGTTATATTTGGAGCTT+TGG | + | chr2.2:21901003-21901022 | None:intergenic | 30.0% |
! | TTTGTGCTAGATTTACCTTT+TGG | - | chr2.2:21900714-21900733 | MS.gene065582:intron | 30.0% |
!! | TGGTAACTTTAAAATGGAAG+TGG | - | chr2.2:21901385-21901404 | MS.gene065582:CDS | 30.0% |
!!! | CTCTATTTTTAAGACACTAG+AGG | - | chr2.2:21901262-21901281 | MS.gene065582:CDS | 30.0% |
!!! | TCATTACTGATTTTGAATGC+AGG | - | chr2.2:21901169-21901188 | MS.gene065582:intron | 30.0% |
AACTCTTCCTGATCAAATGA+AGG | - | chr2.2:21901466-21901485 | MS.gene065582:CDS | 35.0% | |
AAGACACTAGAGGAAACTTT+AGG | - | chr2.2:21901272-21901291 | MS.gene065582:CDS | 35.0% | |
AATGTCAAGAAACCCAAAAG+TGG | + | chr2.2:21901321-21901340 | None:intergenic | 35.0% | |
AGGAAAATGTGGCTTTCAAA+AGG | - | chr2.2:21901206-21901225 | MS.gene065582:intron | 35.0% | |
AGGATTGCATTAGCTGAAAA+GGG | - | chr2.2:21900332-21900351 | MS.gene065582:CDS | 35.0% | |
ATGATACTTGGAGGAAAATG+TGG | - | chr2.2:21901195-21901214 | MS.gene065582:intron | 35.0% | |
CATGAAGAAAACACTTGGTT+TGG | - | chr2.2:21901508-21901527 | MS.gene065582:CDS | 35.0% | |
GCATAAAACCAGCTGTAAAA+AGG | + | chr2.2:21901353-21901372 | None:intergenic | 35.0% | |
GGATTCATCTGAAGAAGTAA+AGG | + | chr2.2:21900401-21900420 | None:intergenic | 35.0% | |
TAGGATTGCATTAGCTGAAA+AGG | - | chr2.2:21900331-21900350 | MS.gene065582:CDS | 35.0% | |
TCATACACCTTCATTTGATC+AGG | + | chr2.2:21901476-21901495 | None:intergenic | 35.0% | |
TGCAGTATATAGATGAGGTT+TGG | - | chr2.2:21900486-21900505 | MS.gene065582:CDS | 35.0% | |
! | TTAGGTGACAAGCCTTTTTA+CGG | - | chr2.2:21901290-21901309 | MS.gene065582:CDS | 35.0% |
!! | AGGTTGTTTTGTTGGATACA+TGG | - | chr2.2:21900285-21900304 | MS.gene065582:CDS | 35.0% |
!! | GGTTGTTTTGTTGGATACAT+GGG | - | chr2.2:21900286-21900305 | MS.gene065582:CDS | 35.0% |
!!! | ACTTTTGGGTTTCTTGACAT+TGG | - | chr2.2:21901320-21901339 | MS.gene065582:CDS | 35.0% |
AAAGTGGTACCACCGTAAAA+AGG | + | chr2.2:21901305-21901324 | None:intergenic | 40.0% | |
GAATGCAGGTGTATGATACT+TGG | - | chr2.2:21901183-21901202 | MS.gene065582:intron | 40.0% | |
GGTTAGCATGTTTGGTATGA+GGG | - | chr2.2:21900307-21900326 | MS.gene065582:CDS | 40.0% | |
GTGAGCATGAAGAAAACACT+TGG | - | chr2.2:21901503-21901522 | MS.gene065582:CDS | 40.0% | |
! | AGAGAGCTCAAGCTAGATTT+TGG | - | chr2.2:21900546-21900565 | MS.gene065582:CDS | 40.0% |
! | GAGAGCTCAAGCTAGATTTT+GGG | - | chr2.2:21900547-21900566 | MS.gene065582:CDS | 40.0% |
! | GTCTAATCCCTTTTTACAGC+TGG | - | chr2.2:21901342-21901361 | MS.gene065582:CDS | 40.0% |
! | TAAGGATCAGAAGGCATGAT+TGG | + | chr2.2:21900524-21900543 | None:intergenic | 40.0% |
! | TTCAAAAGGTGAAGAGCATG+AGG | - | chr2.2:21901220-21901239 | MS.gene065582:intron | 40.0% |
! | TTTTACGGTGGTACCACTTT+TGG | - | chr2.2:21901305-21901324 | MS.gene065582:CDS | 40.0% |
!! | GATACATGGGTTAGCATGTT+TGG | - | chr2.2:21900299-21900318 | MS.gene065582:CDS | 40.0% |
!! | TTTACGGTGGTACCACTTTT+GGG | - | chr2.2:21901306-21901325 | MS.gene065582:CDS | 40.0% |
AGTGTCCTAAACTCATGGCA+TGG | - | chr2.2:21901408-21901427 | MS.gene065582:CDS | 45.0% | |
CTAGCTTGAGCTCTCTCATA+AGG | + | chr2.2:21900542-21900561 | None:intergenic | 45.0% | |
CTCTTTCTCCAAGCATCTCT+TGG | + | chr2.2:21901435-21901454 | None:intergenic | 45.0% | |
GCATGTTTGGTATGAGGGTT+AGG | - | chr2.2:21900312-21900331 | MS.gene065582:CDS | 45.0% | |
GCTCTCTCATAAGGATCAGA+AGG | + | chr2.2:21900533-21900552 | None:intergenic | 45.0% | |
GTGTCCTAAACTCATGGCAT+GGG | - | chr2.2:21901409-21901428 | MS.gene065582:CDS | 45.0% | |
TGCAGGTGTATGATACTTGG+AGG | - | chr2.2:21901186-21901205 | MS.gene065582:intron | 45.0% | |
TGGTAGTCATCCGTTATGAG+AGG | + | chr2.2:21900983-21901002 | None:intergenic | 45.0% | |
! | AAAGGTGAAGAGCATGAGGA+AGG | - | chr2.2:21901224-21901243 | MS.gene065582:CDS | 45.0% |
! | AAGGTGAAGAGCATGAGGAA+GGG | - | chr2.2:21901225-21901244 | MS.gene065582:CDS | 45.0% |
! | AGTGGAGTGTCCTAAACTCA+TGG | - | chr2.2:21901403-21901422 | MS.gene065582:CDS | 45.0% |
! | GGGTTAGCATGTTTGGTATG+AGG | - | chr2.2:21900306-21900325 | MS.gene065582:CDS | 45.0% |
!! | GGCAACAGAGGTTGTTTTGT+TGG | - | chr2.2:21900277-21900296 | MS.gene065582:CDS | 45.0% |
TTGGCCCATGCCATGAGTTT+AGG | + | chr2.2:21901416-21901435 | None:intergenic | 50.0% | |
! | GGTGACAAGCCTTTTTACGG+TGG | - | chr2.2:21901293-21901312 | MS.gene065582:CDS | 50.0% |
GGCATGGGCCAAGAGATGCT+TGG | - | chr2.2:21901424-21901443 | MS.gene065582:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 21900275 | 21901535 | 21900275 | ID=MS.gene065582 |
chr2.2 | mRNA | 21900275 | 21901535 | 21900275 | ID=MS.gene065582.t1;Parent=MS.gene065582 |
chr2.2 | exon | 21901221 | 21901535 | 21901221 | ID=MS.gene065582.t1.exon1;Parent=MS.gene065582.t1 |
chr2.2 | CDS | 21901221 | 21901535 | 21901221 | ID=cds.MS.gene065582.t1;Parent=MS.gene065582.t1 |
chr2.2 | exon | 21900275 | 21900619 | 21900275 | ID=MS.gene065582.t1.exon2;Parent=MS.gene065582.t1 |
chr2.2 | CDS | 21900275 | 21900619 | 21900275 | ID=cds.MS.gene065582.t1;Parent=MS.gene065582.t1 |
Gene Sequence |
Protein sequence |