AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063432

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063432.t1 MTR_2g070150 98.529 204 3 0 1 204 1 204 2.01e-150 416
MS.gene063432.t1 MTR_2g070140 97.044 203 6 0 17 219 1 203 1.72e-147 409
MS.gene063432.t1 MTR_2g070180 88.318 214 25 0 1 214 1 214 3.72e-143 398
MS.gene063432.t1 MTR_2g070130 82.648 219 38 0 1 219 1 219 3.96e-139 388
MS.gene063432.t1 MTR_2g070210 77.828 221 47 1 1 219 1 221 3.03e-130 366
MS.gene063432.t1 MTR_2g070200 72.851 221 58 2 1 219 1 221 3.28e-121 343
MS.gene063432.t1 MTR_2g070060 65.753 219 75 0 1 219 1 219 4.94e-112 320
MS.gene063432.t1 MTR_2g070070 66.667 219 73 0 1 219 1 219 1.89e-109 313
MS.gene063432.t1 MTR_3g467420 66.047 215 73 0 5 219 10 224 6.87e-109 312
MS.gene063432.t1 MTR_8g056940 65.753 219 75 0 1 219 1 219 1.65e-104 301
MS.gene063432.t1 MTR_3g467430 63.134 217 80 0 3 219 8 224 1.09e-103 299
MS.gene063432.t1 MTR_2g070110 63.014 219 80 1 1 219 1 218 3.67e-101 292
MS.gene063432.t1 MTR_4g124130 60.909 220 85 1 1 219 1 220 3.54e-97 282
MS.gene063432.t1 MTR_2g070120 60.563 213 84 0 1 213 1 213 4.90e-94 274
MS.gene063432.t1 MTR_5g076900 53.881 219 99 2 2 219 4 221 4.01e-83 246
MS.gene063432.t1 MTR_0186s0030 68.794 141 44 0 1 141 1 141 8.20e-67 202
MS.gene063432.t1 MTR_1g090060 44.286 210 112 3 4 209 3 211 1.21e-55 177
MS.gene063432.t1 MTR_8g087425 43.318 217 120 2 2 216 3 218 6.96e-55 175
MS.gene063432.t1 MTR_4g059730 43.636 220 117 4 1 215 1 218 1.02e-52 169
MS.gene063432.t1 MTR_7g065740 45.024 211 108 5 3 208 6 213 6.45e-52 167
MS.gene063432.t1 MTR_7g065720 43.128 211 112 5 3 208 6 213 4.13e-51 165
MS.gene063432.t1 MTR_4g019790 43.269 208 113 4 4 208 7 212 4.13e-51 165
MS.gene063432.t1 MTR_3g099757 42.927 205 114 2 3 205 4 207 2.23e-50 163
MS.gene063432.t1 MTR_7g065750 43.541 209 112 4 3 207 6 212 3.72e-50 163
MS.gene063432.t1 MTR_5g037380 43.868 212 110 5 3 205 4 215 9.58e-50 162
MS.gene063432.t1 MTR_4g019780 40.865 208 120 2 3 208 7 213 9.73e-50 161
MS.gene063432.t1 MTR_8g087410 43.627 204 112 2 4 205 6 208 9.79e-50 162
MS.gene063432.t1 MTR_7g065660 41.429 210 118 4 3 209 6 213 1.58e-49 161
MS.gene063432.t1 MTR_5g040430 37.915 211 124 2 2 205 5 215 2.62e-49 160
MS.gene063432.t1 MTR_1g090100 44.712 208 110 3 5 208 3 209 4.28e-49 160
MS.gene063432.t1 MTR_7g065630 41.148 209 114 5 3 208 24 226 6.75e-48 157
MS.gene063432.t1 MTR_1g090070 40.376 213 117 5 4 209 9 218 3.72e-47 155
MS.gene063432.t1 MTR_1g090150 38.739 222 122 6 3 216 2 217 2.27e-46 153
MS.gene063432.t1 MTR_7g065710 40.670 209 119 5 1 208 1 205 5.75e-46 152
MS.gene063432.t1 MTR_6g080440 41.885 191 106 3 18 205 17 205 1.99e-45 150
MS.gene063432.t1 MTR_7g065270 41.148 209 118 5 3 208 6 212 2.81e-45 150
MS.gene063432.t1 MTR_7g065290 41.627 209 117 5 3 208 6 212 8.83e-45 149
MS.gene063432.t1 MTR_7g065265 41.627 209 117 5 3 208 6 212 9.32e-45 149
MS.gene063432.t1 MTR_7g065590 38.095 210 125 4 3 209 6 213 1.73e-44 148
MS.gene063432.t1 MTR_1g090090 42.105 209 116 4 4 208 3 210 5.58e-44 147
MS.gene063432.t1 MTR_7g065230 41.346 208 114 5 3 208 6 207 8.00e-44 146
MS.gene063432.t1 MTR_7g065600 38.756 209 123 4 3 208 6 212 8.00e-44 146
MS.gene063432.t1 MTR_7g065700 42.584 209 115 5 1 208 4 208 9.85e-44 146
MS.gene063432.t1 MTR_8g061950 38.208 212 122 3 3 205 4 215 3.63e-43 145
MS.gene063432.t1 MTR_7g065680 41.148 209 114 5 3 208 6 208 5.60e-43 144
MS.gene063432.t1 MTR_1g115195 40.476 210 118 5 1 205 1 208 2.60e-42 142
MS.gene063432.t1 MTR_7g065640 38.164 207 109 4 3 208 6 194 1.97e-41 140
MS.gene063432.t1 MTR_7g065260 39.303 201 117 5 3 200 13 211 2.40e-36 127
MS.gene063432.t1 MTR_2g072120 63.014 73 26 1 47 118 1 73 5.04e-30 106
MS.gene063432.t1 MTR_4g134370 31.977 172 98 5 3 159 14 181 1.54e-14 70.5
MS.gene063432.t1 MTR_4g134380 31.579 171 98 5 4 159 15 181 1.71e-14 70.1
MS.gene063432.t1 MTR_4g134380 31.515 165 94 5 4 153 15 175 3.06e-13 65.9
MS.gene063432.t1 MTR_4g043640 57.143 42 18 0 148 189 44 85 9.16e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063432.t1 AT1G78380 69.907 216 65 0 1 216 1 216 1.61e-114 326
MS.gene063432.t1 AT1G17180 67.580 219 71 0 1 219 1 219 2.92e-114 325
MS.gene063432.t1 AT1G78340 67.290 214 70 0 1 214 1 214 3.78e-110 315
MS.gene063432.t1 AT1G78370 66.822 214 71 0 1 214 1 214 7.59e-109 311
MS.gene063432.t1 AT1G17170 65.753 219 74 1 1 219 1 218 1.20e-108 311
MS.gene063432.t1 AT1G78360 64.545 220 77 1 1 219 1 220 4.90e-107 307
MS.gene063432.t1 AT1G78320 64.486 214 76 0 1 214 1 214 2.63e-104 300
MS.gene063432.t1 AT1G17190 57.674 215 91 0 3 217 4 218 5.42e-96 279
MS.gene063432.t1 AT1G53680 57.991 219 90 2 3 219 6 224 1.68e-95 278
MS.gene063432.t1 AT3G43800 56.944 216 89 3 3 214 4 219 1.36e-84 250
MS.gene063432.t1 AT1G78320 55.607 214 68 1 1 214 1 187 2.23e-82 244
MS.gene063432.t1 AT2G29420 41.429 210 120 2 2 209 7 215 7.39e-56 177
MS.gene063432.t1 AT3G09270 42.180 211 117 4 3 209 5 214 2.57e-53 171
MS.gene063432.t1 AT2G29450 45.411 207 106 5 3 204 5 209 3.36e-52 168
MS.gene063432.t1 AT2G29440 44.660 206 108 4 3 204 5 208 5.20e-52 167
MS.gene063432.t1 AT2G29480 42.718 206 112 4 3 204 6 209 2.36e-51 166
MS.gene063432.t1 AT2G29490 42.233 206 113 4 3 204 6 209 2.81e-51 166
MS.gene063432.t1 AT1G10360 42.326 215 116 4 2 208 3 217 9.64e-50 162
MS.gene063432.t1 AT1G59700 42.466 219 117 5 3 212 5 223 1.17e-48 159
MS.gene063432.t1 AT2G29460 40.291 206 117 4 3 204 6 209 9.11e-48 157
MS.gene063432.t1 AT1G74590 36.323 223 128 3 3 215 6 224 3.57e-47 155
MS.gene063432.t1 AT2G29470 40.488 205 115 5 5 204 8 210 3.63e-47 155
MS.gene063432.t1 AT1G10370 39.640 222 126 4 2 215 3 224 1.67e-46 154
MS.gene063432.t1 AT1G59670 41.704 223 119 5 3 215 5 226 4.46e-46 152
MS.gene063432.t1 AT1G27130 36.726 226 131 5 3 219 5 227 7.92e-44 147
MS.gene063432.t1 AT1G27140 39.171 217 122 4 3 209 5 221 3.48e-42 143
MS.gene063432.t1 AT5G62480 36.000 225 128 4 3 216 7 226 5.99e-42 142
MS.gene063432.t1 AT1G69930 38.389 211 123 3 5 208 13 223 7.11e-42 142
MS.gene063432.t1 AT1G69920 37.220 223 128 5 5 218 35 254 1.24e-40 139
MS.gene063432.t1 AT5G62480 33.143 175 81 3 3 168 7 154 3.27e-25 98.6
MS.gene063432.t1 AT5G62480 30.667 225 113 6 3 216 7 199 3.41e-25 98.6

Find 57 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCTACACTTGGTTTAA+AGG 0.080766 2.3:+25815135 MS.gene063432:CDS
AGTACAGAGAAGAAGATTTA+AGG 0.220231 2.3:+25813729 MS.gene063432:CDS
TTCAGTATATTGATGAAGTT+TGG 0.281776 2.3:+25813849 MS.gene063432:CDS
ATCCCTGTTCTTATTCATAA+TGG 0.299948 2.3:+25813797 MS.gene063432:CDS
AGCTTCTATGAATTCCTTCT+TGG 0.330842 2.3:-25815031 None:intergenic
AAGTGATTCTGCTAGATTAC+TGG 0.343179 2.3:+25813648 MS.gene063432:CDS
CATAGAAGCTCTCAAATTGT+TGG 0.350336 2.3:+25815044 MS.gene063432:CDS
CTCAACTTGCATGCATCTCT+TGG 0.375471 2.3:-25815217 None:intergenic
CAGAATAGCCTTAGCTGAAA+AGG 0.384073 2.3:+25813694 MS.gene063432:CDS
CACTTATACCATTCTACACT+TGG 0.392571 2.3:+25815127 MS.gene063432:CDS
CCATACACCTTATCTTGATC+AGG 0.396532 2.3:-25815258 None:intergenic
TTACCATTATGAATAAGAAC+AGG 0.399703 2.3:-25813800 None:intergenic
CAAATTGTTGGAGCAAGAGC+TGG 0.400305 2.3:+25815056 MS.gene063432:CDS
AGAGATCACAAGCTAGATTC+TGG 0.406790 2.3:+25813909 MS.gene063432:CDS
GTGGAGATCAGGAAGAAGTT+TGG 0.409480 2.3:+25815288 MS.gene063432:CDS
ATGAAGTTGGAAGGAACCTT+TGG 0.415645 2.3:+25814980 MS.gene063432:CDS
AGCAATTAAAGATTCACAAA+TGG 0.421376 2.3:-25813825 None:intergenic
GCAATTAAAGATTCACAAAT+GGG 0.429408 2.3:-25813824 None:intergenic
TTTAAAGGCTATGAGACCTT+TGG 0.432290 2.3:+25815150 MS.gene063432:CDS
GATTACTGGGTAAGTCCATT+TGG 0.433074 2.3:+25813662 MS.gene063432:CDS
GTCAAATAGATCTATGAAGT+TGG 0.436311 2.3:+25814967 MS.gene063432:intron
CTGGGAGACAAGACTTACTT+TGG 0.447631 2.3:+25815075 MS.gene063432:CDS
CTTGGCCCAAGCAATGAACT+TGG 0.448713 2.3:-25815199 None:intergenic
TACTTTGGAGGAGACAAGAT+TGG 0.453564 2.3:+25815090 MS.gene063432:CDS
ATGCCCCAAGTTCATTGCTT+GGG 0.459033 2.3:+25815194 MS.gene063432:CDS
CTAGCTTGTGATCTCTGATA+AGG 0.467136 2.3:-25813902 None:intergenic
AATGCCCCAAGTTCATTGCT+TGG 0.475316 2.3:+25815193 MS.gene063432:CDS
CCTGATCAAGATAAGGTGTA+TGG 0.482118 2.3:+25815258 MS.gene063432:CDS
ATGGCTTCATTGTGGAGATC+AGG 0.483709 2.3:+25815277 MS.gene063432:CDS
GAGATCACAAGCTAGATTCT+GGG 0.487661 2.3:+25813910 MS.gene063432:CDS
GGTTCATTTGTAACAACAAA+GGG 0.491203 2.3:-25813760 None:intergenic
GGCTGATTATGTTGATAAGA+AGG 0.507102 2.3:+25813931 MS.gene063432:CDS
TTGGCCCAAGCAATGAACTT+GGG 0.508586 2.3:-25815198 None:intergenic
GGAGACAAGACTTACTTTGG+AGG 0.510834 2.3:+25815078 MS.gene063432:CDS
AGAATAGCCTTAGCTGAAAA+GGG 0.511594 2.3:+25813695 MS.gene063432:CDS
ATTCTGACCCTCATGCCAAA+TGG 0.514050 2.3:-25813677 None:intergenic
CTCTACATTGATATTGCCAA+AGG 0.536889 2.3:-25815166 None:intergenic
AGAACAAGAAACTGCCAAGA+AGG 0.541759 2.3:+25815017 MS.gene063432:CDS
CCTTTAAACCAAGTGTAGAA+TGG 0.546679 2.3:-25815135 None:intergenic
AATAGATCTATGAAGTTGGA+AGG 0.547037 2.3:+25814971 MS.gene063432:intron
GTCACTCCCTGATCAAGATA+AGG 0.560024 2.3:+25815251 MS.gene063432:CDS
AGTGATTCTGCTAGATTACT+GGG 0.564225 2.3:+25813649 MS.gene063432:CDS
GGTAAGTCCATTTGGCATGA+GGG 0.564671 2.3:+25813670 MS.gene063432:CDS
GAAGAAGTTTGGCCTTGAGT+AGG 0.573969 2.3:+25815299 MS.gene063432:CDS
TGGCAATATCAATGTAGAGA+AGG 0.574601 2.3:+25815170 MS.gene063432:CDS
TGGCCCAAGCAATGAACTTG+GGG 0.582333 2.3:-25815197 None:intergenic
CAGAATCACTTCATCAGCCA+TGG 0.584359 2.3:-25813636 None:intergenic
GGGTAAGTCCATTTGGCATG+AGG 0.587485 2.3:+25813669 MS.gene063432:CDS
AAATTGTTGGAGCAAGAGCT+GGG 0.593603 2.3:+25815057 MS.gene063432:CDS
GATCTCTGATAAGGATCAGA+AGG 0.596783 2.3:-25813893 None:intergenic
GGGTTCATTTGTAACAACAA+AGG 0.598423 2.3:-25813761 None:intergenic
ATCTTGATCAGGGAGTGACT+TGG 0.607214 2.3:-25815247 None:intergenic
CATACACCTTATCTTGATCA+GGG 0.608113 2.3:-25815257 None:intergenic
TAAGGATCAGAAGGCAACAA+AGG 0.613337 2.3:-25813884 None:intergenic
TGACATCTCCAACCTACTCA+AGG 0.625823 2.3:-25815311 None:intergenic
TAAGGTGTATGGCTTCATTG+TGG 0.640406 2.3:+25815269 MS.gene063432:CDS
TACCATTATGAATAAGAACA+GGG 0.645194 2.3:-25813799 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATATAATTGATTCATATTA+CGG - chr2.3:25814777-25814796 None:intergenic 15.0%
!! AAGCTATTAAGTTATTGTTA+AGG + chr2.3:25814414-25814433 MS.gene063432:intron 20.0%
!! AGTTATTATTTATACAGACA+AGG + chr2.3:25814750-25814769 MS.gene063432:intron 20.0%
!! CTAAAAAATATCAAATAGCT+TGG - chr2.3:25814854-25814873 None:intergenic 20.0%
!! GTTATTATTTATACAGACAA+GGG + chr2.3:25814751-25814770 MS.gene063432:intron 20.0%
!!! ATAATAACTCTTTGAAATAG+TGG - chr2.3:25814739-25814758 None:intergenic 20.0%
!!! GGTTATAGTTTTTTTATCAT+TGG + chr2.3:25814006-25814025 MS.gene063432:intron 20.0%
!!! TTTTTTTGAGCTTATTTTGA+AGG + chr2.3:25814144-25814163 MS.gene063432:intron 20.0%
! AATAAAACTTTCATCGACAA+GGG - chr2.3:25814050-25814069 None:intergenic 25.0%
! ACACAACCCAAAAAAAAAAT+CGG - chr2.3:25814505-25814524 None:intergenic 25.0%
! AGCAATTAAAGATTCACAAA+TGG - chr2.3:25813828-25813847 None:intergenic 25.0%
! GCAATTAAAGATTCACAAAT+GGG - chr2.3:25813827-25813846 None:intergenic 25.0%
! TACCATTATGAATAAGAACA+GGG - chr2.3:25813802-25813821 None:intergenic 25.0%
! TTACCATTATGAATAAGAAC+AGG - chr2.3:25813803-25813822 None:intergenic 25.0%
! TTCAGTATATTGATGAAGTT+TGG + chr2.3:25813849-25813868 MS.gene063432:CDS 25.0%
!!! TTGATATTTTTTAGCATGCA+TGG + chr2.3:25814860-25814879 MS.gene063432:intron 25.0%
AATAGATCTATGAAGTTGGA+AGG + chr2.3:25814971-25814990 MS.gene063432:intron 30.0%
AGTACAGAGAAGAAGATTTA+AGG + chr2.3:25813729-25813748 MS.gene063432:CDS 30.0%
ATCCCTGTTCTTATTCATAA+TGG + chr2.3:25813797-25813816 MS.gene063432:CDS 30.0%
ATGAACATGTGTTCATATGT+GGG + chr2.3:25814665-25814684 MS.gene063432:intron 30.0%
CATTGCATGTGATTATTTGT+TGG + chr2.3:25813985-25814004 MS.gene063432:intron 30.0%
CTATAAAAGCTATCTTTGAG+AGG - chr2.3:25814293-25814312 None:intergenic 30.0%
GAATAAAACTTTCATCGACA+AGG - chr2.3:25814051-25814070 None:intergenic 30.0%
GGTTCATTTGTAACAACAAA+GGG - chr2.3:25813763-25813782 None:intergenic 30.0%
GTCAAATAGATCTATGAAGT+TGG + chr2.3:25814967-25814986 MS.gene063432:intron 30.0%
TATTAGCAAGTATTAGTCCT+AGG + chr2.3:25814887-25814906 MS.gene063432:intron 30.0%
TGTTATCAAGTTTCTGCTAT+CGG + chr2.3:25814586-25814605 MS.gene063432:intron 30.0%
! ATGTTCATGACATCTTTTGT+CGG - chr2.3:25814653-25814672 None:intergenic 30.0%
!! CTAATTGAAGTGTGCTTTTT+CGG + chr2.3:25814254-25814273 MS.gene063432:intron 30.0%
!! TATTTTGAAGGACTTATTGG+AGG + chr2.3:25814156-25814175 MS.gene063432:intron 30.0%
!!! GCTTATTTTGAAGGACTTAT+TGG + chr2.3:25814153-25814172 MS.gene063432:intron 30.0%
!!! TTCTTGTTCTTCTCCTTTTT+TGG - chr2.3:25815007-25815026 None:intergenic 30.0%
AAGTGATTCTGCTAGATTAC+TGG + chr2.3:25813648-25813667 MS.gene063432:CDS 35.0%
AGCATCCGTTAAGATCAATT+TGG + chr2.3:25814558-25814577 MS.gene063432:intron 35.0%
AGCTTCTATGAATTCCTTCT+TGG - chr2.3:25815034-25815053 None:intergenic 35.0%
AGTGATTCTGCTAGATTACT+GGG + chr2.3:25813649-25813668 MS.gene063432:CDS 35.0%
AGTGGCCAAATTGATCTTAA+CGG - chr2.3:25814566-25814585 None:intergenic 35.0%
CACTTATACCATTCTACACT+TGG + chr2.3:25815127-25815146 MS.gene063432:CDS 35.0%
CATACACCTTATCTTGATCA+GGG - chr2.3:25815260-25815279 None:intergenic 35.0%
CATAGAAGCTCTCAAATTGT+TGG + chr2.3:25815044-25815063 MS.gene063432:CDS 35.0%
CATGAACATGTGTTCATATG+TGG + chr2.3:25814664-25814683 MS.gene063432:intron 35.0%
CCACTTATAAACACATGTTC+AGG - chr2.3:25814461-25814480 None:intergenic 35.0%
CCATTCTACACTTGGTTTAA+AGG + chr2.3:25815135-25815154 MS.gene063432:CDS 35.0%
CCTGAACATGTGTTTATAAG+TGG + chr2.3:25814458-25814477 MS.gene063432:intron 35.0%
CCTTTAAACCAAGTGTAGAA+TGG - chr2.3:25815138-25815157 None:intergenic 35.0%
CTCTACATTGATATTGCCAA+AGG - chr2.3:25815169-25815188 None:intergenic 35.0%
GAACATGTGTTTATAAGTGG+AGG + chr2.3:25814461-25814480 MS.gene063432:intron 35.0%
GGGTTCATTTGTAACAACAA+AGG - chr2.3:25813764-25813783 None:intergenic 35.0%
GTTATCAAGTTTCTGCTATC+GGG + chr2.3:25814587-25814606 MS.gene063432:intron 35.0%
TGAACATGTGTTCATATGTG+GGG + chr2.3:25814666-25814685 MS.gene063432:intron 35.0%
TGGCAATATCAATGTAGAGA+AGG + chr2.3:25815170-25815189 MS.gene063432:CDS 35.0%
TTTAAAGGCTATGAGACCTT+TGG + chr2.3:25815150-25815169 MS.gene063432:CDS 35.0%
! ACAGGGATTTTCTTATGAAC+AGG - chr2.3:25813785-25813804 None:intergenic 35.0%
! ACTTTGGTTCATGGACTAAA+TGG - chr2.3:25814620-25814639 None:intergenic 35.0%
! AGAATAGCCTTAGCTGAAAA+GGG + chr2.3:25813695-25813714 MS.gene063432:CDS 35.0%
! AGCAGAAACTTGATAACAAG+TGG - chr2.3:25814584-25814603 None:intergenic 35.0%
! CAGGGATTTTCTTATGAACA+GGG - chr2.3:25813784-25813803 None:intergenic 35.0%
! GGCTGATTATGTTGATAAGA+AGG + chr2.3:25813931-25813950 MS.gene063432:CDS 35.0%
! TCACTTAGAAGTCAGTTTTG+TGG + chr2.3:25814696-25814715 MS.gene063432:intron 35.0%
! TTCTTTTGCACGTGATTGTT+TGG + chr2.3:25814103-25814122 MS.gene063432:intron 35.0%
! TTTGATACCCTTTTCAGCTA+AGG - chr2.3:25813705-25813724 None:intergenic 35.0%
!! AAAAAAAAAATCGGCTTGCC+AGG - chr2.3:25814496-25814515 None:intergenic 35.0%
!!! GGCAAGCCGATTTTTTTTTT+GGG + chr2.3:25814496-25814515 MS.gene063432:intron 35.0%
!!! TGGCAAGCCGATTTTTTTTT+TGG + chr2.3:25814495-25814514 MS.gene063432:intron 35.0%
AAATTGTTGGAGCAAGAGCT+GGG + chr2.3:25815057-25815076 MS.gene063432:CDS 40.0%
AAGAAAAACAACAGCCTCCT+AGG - chr2.3:25814907-25814926 None:intergenic 40.0%
AGAACAAGAAACTGCCAAGA+AGG + chr2.3:25815017-25815036 MS.gene063432:CDS 40.0%
AGAGATCACAAGCTAGATTC+TGG + chr2.3:25813909-25813928 MS.gene063432:CDS 40.0%
AGGAACCTTTGGACCAAAAA+AGG + chr2.3:25814991-25815010 MS.gene063432:CDS 40.0%
ATGAAGTTGGAAGGAACCTT+TGG + chr2.3:25814980-25814999 MS.gene063432:CDS 40.0%
CCATACACCTTATCTTGATC+AGG - chr2.3:25815261-25815280 None:intergenic 40.0%
CCTGATCAAGATAAGGTGTA+TGG + chr2.3:25815258-25815277 MS.gene063432:CDS 40.0%
GAACATGTGTTCATATGTGG+GGG + chr2.3:25814667-25814686 MS.gene063432:intron 40.0%
GAGATCACAAGCTAGATTCT+GGG + chr2.3:25813910-25813929 MS.gene063432:CDS 40.0%
GATCTCTGATAAGGATCAGA+AGG - chr2.3:25813896-25813915 None:intergenic 40.0%
GATTACTGGGTAAGTCCATT+TGG + chr2.3:25813662-25813681 MS.gene063432:CDS 40.0%
TAAGGATCAGAAGGCAACAA+AGG - chr2.3:25813887-25813906 None:intergenic 40.0%
TAAGGTGTATGGCTTCATTG+TGG + chr2.3:25815269-25815288 MS.gene063432:CDS 40.0%
TAGCAAGTATTAGTCCTAGG+AGG + chr2.3:25814890-25814909 MS.gene063432:intron 40.0%
TTCATCGACAAGGGACAAAA+GGG - chr2.3:25814041-25814060 None:intergenic 40.0%
TTTCATCGACAAGGGACAAA+AGG - chr2.3:25814042-25814061 None:intergenic 40.0%
! CAGAATAGCCTTAGCTGAAA+AGG + chr2.3:25813694-25813713 MS.gene063432:CDS 40.0%
! CATGACATCTTTTGTCGGAT+GGG - chr2.3:25814648-25814667 None:intergenic 40.0%
! CTAGCTTGTGATCTCTGATA+AGG - chr2.3:25813905-25813924 None:intergenic 40.0%
! TACTTTGGAGGAGACAAGAT+TGG + chr2.3:25815090-25815109 MS.gene063432:CDS 40.0%
! TCATGACATCTTTTGTCGGA+TGG - chr2.3:25814649-25814668 None:intergenic 40.0%
! TTGGTTCATGGACTAAATGG+TGG - chr2.3:25814617-25814636 None:intergenic 40.0%
!!! AGGAGACAAGATTGGTTTTG+TGG + chr2.3:25815098-25815117 MS.gene063432:CDS 40.0%
!!! CAGTTTTGTGGTGTTGTGTT+AGG + chr2.3:25814708-25814727 MS.gene063432:intron 40.0%
!!! CTTCTCCTTTTTTGGTCCAA+AGG - chr2.3:25814999-25815018 None:intergenic 40.0%
AATGCCCCAAGTTCATTGCT+TGG + chr2.3:25815193-25815212 MS.gene063432:CDS 45.0%
ATCTTGATCAGGGAGTGACT+TGG - chr2.3:25815250-25815269 None:intergenic 45.0%
ATGCCCCAAGTTCATTGCTT+GGG + chr2.3:25815194-25815213 MS.gene063432:CDS 45.0%
ATGGCTTCATTGTGGAGATC+AGG + chr2.3:25815277-25815296 MS.gene063432:CDS 45.0%
ATTCTGACCCTCATGCCAAA+TGG - chr2.3:25813680-25813699 None:intergenic 45.0%
CAAATTGTTGGAGCAAGAGC+TGG + chr2.3:25815056-25815075 MS.gene063432:CDS 45.0%
CTCAACTTGCATGCATCTCT+TGG - chr2.3:25815220-25815239 None:intergenic 45.0%
CTGGGAGACAAGACTTACTT+TGG + chr2.3:25815075-25815094 MS.gene063432:CDS 45.0%
GGAGACAAGACTTACTTTGG+AGG + chr2.3:25815078-25815097 MS.gene063432:CDS 45.0%
GGTAAGTCCATTTGGCATGA+GGG + chr2.3:25813670-25813689 MS.gene063432:CDS 45.0%
GTCACTCCCTGATCAAGATA+AGG + chr2.3:25815251-25815270 MS.gene063432:CDS 45.0%
GTGGAGATCAGGAAGAAGTT+TGG + chr2.3:25815288-25815307 MS.gene063432:CDS 45.0%
TCAGGCCATCTATCTGATGT+GGG - chr2.3:25814443-25814462 None:intergenic 45.0%
TTCAGGCCATCTATCTGATG+TGG - chr2.3:25814444-25814463 None:intergenic 45.0%
TTGGCCCAAGCAATGAACTT+GGG - chr2.3:25815201-25815220 None:intergenic 45.0%
! CATCTTTTGTCGGATGGGAT+TGG - chr2.3:25814643-25814662 None:intergenic 45.0%
! TGGGATTGGACTTTGGTTCA+TGG - chr2.3:25814629-25814648 None:intergenic 45.0%
CTTGGCCCAAGCAATGAACT+TGG - chr2.3:25815202-25815221 None:intergenic 50.0%
GGAGTCCCACATCAGATAGA+TGG + chr2.3:25814435-25814454 MS.gene063432:intron 50.0%
GGGTAAGTCCATTTGGCATG+AGG + chr2.3:25813669-25813688 MS.gene063432:CDS 50.0%
TGGCCCAAGCAATGAACTTG+GGG - chr2.3:25815200-25815219 None:intergenic 50.0%
TGTCGGATGGGATTGGACTT+TGG - chr2.3:25814636-25814655 None:intergenic 50.0%
AAGTGGAGGCAACTCTCACC+TGG + chr2.3:25814475-25814494 MS.gene063432:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 25813638 25815320 25813638 ID=MS.gene063432
chr2.3 mRNA 25813638 25815320 25813638 ID=MS.gene063432.t1;Parent=MS.gene063432
chr2.3 exon 25813638 25813952 25813638 ID=MS.gene063432.t1.exon1;Parent=MS.gene063432.t1
chr2.3 CDS 25813638 25813952 25813638 ID=cds.MS.gene063432.t1;Parent=MS.gene063432.t1
chr2.3 exon 25814976 25815320 25814976 ID=MS.gene063432.t1.exon2;Parent=MS.gene063432.t1
chr2.3 CDS 25814976 25815320 25814976 ID=cds.MS.gene063432.t1;Parent=MS.gene063432.t1
Gene Sequence

>MS.gene063432

ATGGCTGATGAAGTGATTCTGCTAGATTACTGGGTAAGTCCATTTGGCATGAGGGTCAGAATAGCCTTAGCTGAAAAGGGTATCAAACATGAGTACAGAGAAGAAGATTTAAGGAACAAGAGCCCTTTGTTGTTACAAATGAACCCTGTTCATAAGAAAATCCCTGTTCTTATTCATAATGGTAAACCCATTTGTGAATCTTTAATTGCTGTTCAGTATATTGATGAAGTTTGGAATGAGAAATCTCCTTTGTTGCCTTCTGATCCTTATCAGAGATCACAAGCTAGATTCTGGGCTGATTATGTTGATAAGAAGGTATATTAATTTACACTTTTTCTATGATTCATCATTGCATGTGATTATTTGTTGGTTATAGTTTTTTTATCATTGGTTTTGTTGACCCTTTTGTCCCTTGTCGATGAAAGTTTTATTCTTTTTCATTTTTAGTATTAATTCTTTAATTAATTCTTTTGCACGTGATTGTTTGGACATTTCTGAAATTTAACTTTTTTTGAGCTTATTTTGAAGGACTTATTGGAGGTTTATAGCATATGTGAGACTGTTTTCTGAGAGTTTAGCAAAACAGCTTATTCACATGTCTATAATCTGCTTTTAGCTAATTGAAGTGTGCTTTTTCGGCTTAATTTCATAACCTCTCAAAGATAGCTTTTATAGTTTATATACATTTATAAATAAGTTTACATAAAACAAATTAACTTTTGTTTTAAAAATAGTTTATATATGAGCACTTCTATGACAAAACTAGCTACTTAACTAAGCTATTAAGTTATTGTTAAGGAGTCCCACATCAGATAGATGGCCTGAACATGTGTTTATAAGTGGAGGCAACTCTCACCTGGCAAGCCGATTTTTTTTTTGGGTTGTGTTAAGTTAAGTCACAAATTTTAAGATGATATTAGAGCATCCGTTAAGATCAATTTGGCCACTTGTTATCAAGTTTCTGCTATCGGGTTATCCACCATTTAGTCCATGAACCAAAGTCCAATCCCATCCGACAAAAGATGTCATGAACATGTGTTCATATGTGGGGGTAATTTTCACTTAGAAGTCAGTTTTGTGGTGTTGTGTTAGGCTCAACCACTATTTCAAAGAGTTATTATTTATACAGACAAGGGCCGTAATATGAATCAATTATATGCTTCTCAAGTATTTGAAGATAGTTGAAATTTGAAACACTTTTGTTTTGAACAATCCAAGCTATTTGATATTTTTTAGCATGCATGGTCACTATTAGCAAGTATTAGTCCTAGGAGGCTGTTGTTTTTCTTGTTATTGCATTTGATGATCTAATTGTGTGTAATTCTCAATGTCAAATAGATCTATGAAGTTGGAAGGAACCTTTGGACCAAAAAAGGAGAAGAACAAGAAACTGCCAAGAAGGAATTCATAGAAGCTCTCAAATTGTTGGAGCAAGAGCTGGGAGACAAGACTTACTTTGGAGGAGACAAGATTGGTTTTGTGGATGTAGCACTTATACCATTCTACACTTGGTTTAAAGGCTATGAGACCTTTGGCAATATCAATGTAGAGAAGGAATGCCCCAAGTTCATTGCTTGGGCCAAGAGATGCATGCAAGTTGAGAGTGTTTCCAAGTCACTCCCTGATCAAGATAAGGTGTATGGCTTCATTGTGGAGATCAGGAAGAAGTTTGGCCTTGAGTAG
Protein sequence

>MS.gene063432.t1

MADEVILLDYWVSPFGMRVRIALAEKGIKHEYREEDLRNKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQYIDEVWNEKSPLLPSDPYQRSQARFWADYVDKKIYEVGRNLWTKKGEEQETAKKEFIEALKLLEQELGDKTYFGGDKIGFVDVALIPFYTWFKGYETFGNINVEKECPKFIAWAKRCMQVESVSKSLPDQDKVYGFIVEIRKKFGLE