AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039177

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039177.t1 MTR_2g070150 99.020 204 2 0 1 204 1 204 6.00e-151 417
MS.gene039177.t1 MTR_2g070140 97.537 203 5 0 17 219 1 203 4.52e-148 410
MS.gene039177.t1 MTR_2g070180 88.785 214 24 0 1 214 1 214 1.16e-143 399
MS.gene039177.t1 MTR_2g070130 82.192 219 39 0 1 219 1 219 2.73e-138 386
MS.gene039177.t1 MTR_2g070210 77.828 221 47 1 1 219 1 221 3.34e-130 365
MS.gene039177.t1 MTR_2g070200 73.303 221 57 2 1 219 1 221 1.04e-121 344
MS.gene039177.t1 MTR_2g070060 65.753 219 75 0 1 219 1 219 4.62e-112 320
MS.gene039177.t1 MTR_2g070070 66.667 219 73 0 1 219 1 219 2.02e-109 313
MS.gene039177.t1 MTR_3g467420 66.047 215 73 0 5 219 10 224 6.87e-109 312
MS.gene039177.t1 MTR_8g056940 65.753 219 75 0 1 219 1 219 2.35e-104 300
MS.gene039177.t1 MTR_3g467430 63.134 217 80 0 3 219 8 224 1.21e-103 298
MS.gene039177.t1 MTR_2g070110 63.014 219 80 1 1 219 1 218 3.40e-101 292
MS.gene039177.t1 MTR_4g124130 60.909 220 85 1 1 219 1 220 3.39e-97 282
MS.gene039177.t1 MTR_2g070120 61.033 213 83 0 1 213 1 213 1.09e-94 276
MS.gene039177.t1 MTR_5g076900 53.881 219 99 2 2 219 4 221 5.33e-83 246
MS.gene039177.t1 MTR_0186s0030 68.794 141 44 0 1 141 1 141 1.14e-66 202
MS.gene039177.t1 MTR_1g090060 44.286 210 112 3 4 209 3 211 1.21e-55 177
MS.gene039177.t1 MTR_8g087425 43.318 217 120 2 2 216 3 218 7.51e-55 175
MS.gene039177.t1 MTR_4g059730 43.636 220 117 4 1 215 1 218 1.59e-52 169
MS.gene039177.t1 MTR_7g065740 45.024 211 108 5 3 208 6 213 8.55e-52 167
MS.gene039177.t1 MTR_4g019790 43.269 208 113 4 4 208 7 212 4.65e-51 165
MS.gene039177.t1 MTR_7g065720 43.128 211 112 5 3 208 6 213 5.24e-51 165
MS.gene039177.t1 MTR_3g099757 42.927 205 114 2 3 205 4 207 2.16e-50 163
MS.gene039177.t1 MTR_7g065750 43.541 209 112 4 3 207 6 212 4.57e-50 162
MS.gene039177.t1 MTR_8g087410 43.627 204 112 2 4 205 6 208 1.04e-49 162
MS.gene039177.t1 MTR_5g037380 43.662 213 111 5 2 205 3 215 1.20e-49 162
MS.gene039177.t1 MTR_4g019780 40.865 208 120 2 3 208 7 213 1.24e-49 161
MS.gene039177.t1 MTR_7g065660 41.429 210 118 4 3 209 6 213 1.70e-49 161
MS.gene039177.t1 MTR_5g040430 37.915 211 124 2 2 205 5 215 2.92e-49 160
MS.gene039177.t1 MTR_1g090100 44.712 208 110 3 5 208 3 209 3.93e-49 160
MS.gene039177.t1 MTR_7g065630 41.148 209 114 5 3 208 24 226 7.69e-48 157
MS.gene039177.t1 MTR_1g090070 40.376 213 117 5 4 209 9 218 3.80e-47 155
MS.gene039177.t1 MTR_1g090150 38.739 222 122 6 3 216 2 217 2.15e-46 153
MS.gene039177.t1 MTR_7g065710 40.670 209 119 5 1 208 1 205 6.07e-46 152
MS.gene039177.t1 MTR_7g065270 41.148 209 118 5 3 208 6 212 2.49e-45 150
MS.gene039177.t1 MTR_6g080440 41.885 191 106 3 18 205 17 205 2.50e-45 150
MS.gene039177.t1 MTR_7g065290 41.627 209 117 5 3 208 6 212 8.83e-45 149
MS.gene039177.t1 MTR_7g065265 41.627 209 117 5 3 208 6 212 9.12e-45 149
MS.gene039177.t1 MTR_7g065590 38.095 210 125 4 3 209 6 213 1.64e-44 148
MS.gene039177.t1 MTR_1g090090 42.105 209 116 4 4 208 3 210 5.06e-44 147
MS.gene039177.t1 MTR_7g065600 38.756 209 123 4 3 208 6 212 8.45e-44 146
MS.gene039177.t1 MTR_7g065700 42.584 209 115 5 1 208 4 208 1.01e-43 146
MS.gene039177.t1 MTR_7g065230 41.346 208 114 5 3 208 6 207 1.21e-43 146
MS.gene039177.t1 MTR_8g061950 38.208 212 122 3 3 205 4 215 3.75e-43 145
MS.gene039177.t1 MTR_7g065680 41.148 209 114 5 3 208 6 208 5.98e-43 144
MS.gene039177.t1 MTR_1g115195 40.476 210 118 5 1 205 1 208 2.99e-42 142
MS.gene039177.t1 MTR_7g065640 38.164 207 109 4 3 208 6 194 1.83e-41 140
MS.gene039177.t1 MTR_7g065260 39.303 201 117 5 3 200 13 211 2.28e-36 127
MS.gene039177.t1 MTR_2g072120 63.014 73 26 1 47 118 1 73 5.15e-30 106
MS.gene039177.t1 MTR_4g134370 30.114 176 96 5 3 159 14 181 1.74e-14 70.1
MS.gene039177.t1 MTR_4g134380 31.579 171 98 5 4 159 15 181 1.89e-14 70.1
MS.gene039177.t1 MTR_4g134380 31.515 165 94 5 4 153 15 175 3.12e-13 65.9
MS.gene039177.t1 MTR_4g043640 57.143 42 18 0 148 189 44 85 9.07e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039177.t1 AT1G78380 70.370 216 64 0 1 216 1 216 4.18e-115 327
MS.gene039177.t1 AT1G17180 68.037 219 70 0 1 219 1 219 6.80e-115 327
MS.gene039177.t1 AT1G78340 66.822 214 71 0 1 214 1 214 2.11e-109 313
MS.gene039177.t1 AT1G78370 67.290 214 70 0 1 214 1 214 2.23e-109 313
MS.gene039177.t1 AT1G17170 66.210 219 73 1 1 219 1 218 3.38e-109 312
MS.gene039177.t1 AT1G78360 65.000 220 76 1 1 219 1 220 1.32e-107 308
MS.gene039177.t1 AT1G78320 64.953 214 75 0 1 214 1 214 6.33e-105 302
MS.gene039177.t1 AT1G17190 58.140 215 90 0 3 217 4 218 1.25e-96 281
MS.gene039177.t1 AT1G53680 57.991 219 90 2 3 219 6 224 1.68e-95 278
MS.gene039177.t1 AT3G43800 56.944 216 89 3 3 214 4 219 1.00e-84 251
MS.gene039177.t1 AT1G78320 56.075 214 67 1 1 214 1 187 5.88e-83 245
MS.gene039177.t1 AT2G29420 41.905 210 119 2 2 209 7 215 1.47e-56 179
MS.gene039177.t1 AT3G09270 42.180 211 117 4 3 209 5 214 2.62e-53 171
MS.gene039177.t1 AT2G29450 45.411 207 106 5 3 204 5 209 3.36e-52 168
MS.gene039177.t1 AT2G29440 44.660 206 108 4 3 204 5 208 5.43e-52 167
MS.gene039177.t1 AT2G29480 42.718 206 112 4 3 204 6 209 2.31e-51 166
MS.gene039177.t1 AT2G29490 42.233 206 113 4 3 204 6 209 2.91e-51 166
MS.gene039177.t1 AT1G10360 42.791 215 115 4 2 208 3 217 2.54e-50 163
MS.gene039177.t1 AT1G59700 42.922 219 116 5 3 212 5 223 3.56e-49 160
MS.gene039177.t1 AT2G29460 40.291 206 117 4 3 204 6 209 1.08e-47 156
MS.gene039177.t1 AT1G74590 36.323 223 128 3 3 215 6 224 3.10e-47 155
MS.gene039177.t1 AT2G29470 40.488 205 115 5 5 204 8 210 3.51e-47 155
MS.gene039177.t1 AT1G59670 42.152 223 118 5 3 215 5 226 1.18e-46 154
MS.gene039177.t1 AT1G10370 39.640 222 126 4 2 215 3 224 1.64e-46 154
MS.gene039177.t1 AT1G27130 37.168 226 130 5 3 219 5 227 2.44e-44 148
MS.gene039177.t1 AT1G27140 39.631 217 121 4 3 209 5 221 9.24e-43 144
MS.gene039177.t1 AT1G69930 38.389 211 123 3 5 208 13 223 1.81e-42 143
MS.gene039177.t1 AT5G62480 36.000 225 128 4 3 216 7 226 5.04e-42 142
MS.gene039177.t1 AT1G69920 37.168 226 124 6 5 218 35 254 1.39e-40 139
MS.gene039177.t1 AT5G62480 33.143 175 81 3 3 168 7 154 2.91e-25 98.6
MS.gene039177.t1 AT5G62480 33.143 175 80 3 3 168 7 153 3.16e-25 98.6

Find 60 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCTACACTTGGTTTAA+AGG 0.105597 2.1:+28426190 MS.gene039177:CDS
GCTCTTGCTCCAAGAGTTTA+AGG 0.122619 2.1:-28426108 None:intergenic
AGTACAGAGAAGAAGATTTA+AGG 0.220231 2.1:+28424772 MS.gene039177:CDS
GGCTTCTATGAATTCCTTCT+TGG 0.303918 2.1:-28426086 None:intergenic
TTCAGTATATTGATGAGGTT+TGG 0.327749 2.1:+28424892 MS.gene039177:CDS
AAGTGATTCTGCTAGATTAC+TGG 0.343179 2.1:+28424691 MS.gene039177:CDS
CATAGAAGCCCTTAAACTCT+TGG 0.363135 2.1:+28426099 MS.gene039177:CDS
CTCAACTTGCATGCATCTCT+TGG 0.375471 2.1:-28426272 None:intergenic
CAGAATAGCCTTAGCTGAAA+AGG 0.384073 2.1:+28424737 MS.gene039177:CDS
TTTCCATTATGAATGAGAAC+AGG 0.384624 2.1:-28424843 None:intergenic
ATCCCTGTTCTCATTCATAA+TGG 0.385871 2.1:+28424840 MS.gene039177:CDS
CCATACACCTTATCTTGATC+AGG 0.396532 2.1:-28426313 None:intergenic
CACTCATTCCATTCTACACT+TGG 0.402393 2.1:+28426182 MS.gene039177:CDS
AGAGATCACAAGCTAGATTC+TGG 0.406790 2.1:+28424952 MS.gene039177:CDS
GTGGAGATCAGGAAGAAGTT+TGG 0.409480 2.1:+28426343 MS.gene039177:CDS
CTCTTGCTCCAAGAGTTTAA+GGG 0.414095 2.1:-28426107 None:intergenic
ATGAAGTTGGAAGGAACCTT+TGG 0.415645 2.1:+28426035 MS.gene039177:CDS
AGCAATTAAAGATTCACAAA+TGG 0.421376 2.1:-28424868 None:intergenic
GCAATTAAAGATTCACAAAT+GGG 0.429408 2.1:-28424867 None:intergenic
TTTAAAGGCTATGAGACCTT+TGG 0.432290 2.1:+28426205 MS.gene039177:CDS
GATTACTGGGTAAGTCCATT+TGG 0.433074 2.1:+28424705 MS.gene039177:CDS
TAAACTCTTGGAGCAAGAGC+TGG 0.443964 2.1:+28426111 MS.gene039177:CDS
CTGGGAGACAAGACTTACTT+TGG 0.447631 2.1:+28426130 MS.gene039177:CDS
CTTGGCCCAAGCAATGAACT+TGG 0.448713 2.1:-28426254 None:intergenic
TACTTTGGAGGAGACAAGAT+TGG 0.453564 2.1:+28426145 MS.gene039177:CDS
ATGCCCCAAGTTCATTGCTT+GGG 0.459033 2.1:+28426249 MS.gene039177:CDS
CTAGCTTGTGATCTCTGATA+AGG 0.467136 2.1:-28424945 None:intergenic
GGTTCATTTGTAACAACAAA+GGG 0.468218 2.1:-28424803 None:intergenic
AATGCCCCAAGTTCATTGCT+TGG 0.475316 2.1:+28426248 MS.gene039177:CDS
CCTGATCAAGATAAGGTGTA+TGG 0.482118 2.1:+28426313 MS.gene039177:CDS
ATGGCTTCATTGTGGAGATC+AGG 0.483709 2.1:+28426332 MS.gene039177:CDS
GTGAAATAGATCTATGAAGT+TGG 0.485653 2.1:+28426022 MS.gene039177:intron
GAGATCACAAGCTAGATTCT+GGG 0.487661 2.1:+28424953 MS.gene039177:CDS
CCTTTAAACCAAGTGTAGAA+TGG 0.500913 2.1:-28426190 None:intergenic
GGCTGATTATGTTGATAAGA+AGG 0.507102 2.1:+28424974 MS.gene039177:CDS
TTGGCCCAAGCAATGAACTT+GGG 0.508586 2.1:-28426253 None:intergenic
GGAGACAAGACTTACTTTGG+AGG 0.510834 2.1:+28426133 MS.gene039177:CDS
AGAATAGCCTTAGCTGAAAA+GGG 0.511594 2.1:+28424738 MS.gene039177:CDS
ATTCTGACCCTCATGCCAAA+TGG 0.514050 2.1:-28424720 None:intergenic
AGAACAAGAAGCTGCCAAGA+AGG 0.534444 2.1:+28426072 MS.gene039177:CDS
CTCTACATTGATGTTGCCAA+AGG 0.546992 2.1:-28426221 None:intergenic
GTCACTCCCTGATCAAGATA+AGG 0.560024 2.1:+28426306 MS.gene039177:CDS
AATAGATCTATGAAGTTGGA+AGG 0.560610 2.1:+28426026 MS.gene039177:intron
AGTGATTCTGCTAGATTACT+GGG 0.564225 2.1:+28424692 MS.gene039177:CDS
GGTAAGTCCATTTGGCATGA+GGG 0.564671 2.1:+28424713 MS.gene039177:CDS
AAACTCTTGGAGCAAGAGCT+GGG 0.566713 2.1:+28426112 MS.gene039177:CDS
TGCTGTTCAGTATATTGATG+AGG 0.571065 2.1:+28424887 MS.gene039177:CDS
TGGCAACATCAATGTAGAGA+AGG 0.574601 2.1:+28426225 MS.gene039177:CDS
TGGCCCAAGCAATGAACTTG+GGG 0.582333 2.1:-28426252 None:intergenic
GGGTTCATTTGTAACAACAA+AGG 0.583454 2.1:-28424804 None:intergenic
GGGTAAGTCCATTTGGCATG+AGG 0.587485 2.1:+28424712 MS.gene039177:CDS
GATCTCTGATAAGGATCAGA+AGG 0.596783 2.1:-28424936 None:intergenic
TTCCATTATGAATGAGAACA+GGG 0.600232 2.1:-28424842 None:intergenic
ATCTTGATCAGGGAGTGACT+TGG 0.607214 2.1:-28426302 None:intergenic
CATACACCTTATCTTGATCA+GGG 0.608113 2.1:-28426312 None:intergenic
TAAGGATCAGAAGGCAACAA+AGG 0.613337 2.1:-28424927 None:intergenic
TTTGTTGTTACAAATGAACC+CGG 0.623870 2.1:+28424806 MS.gene039177:CDS
GAAGAAGTTTGGCCTCGAGT+AGG 0.634335 2.1:+28426354 MS.gene039177:CDS
TAAGGTGTATGGCTTCATTG+TGG 0.640406 2.1:+28426324 MS.gene039177:CDS
AAACATCTCCAGCCTACTCG+AGG 0.662131 2.1:-28426366 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAGTTAATTATACAAATA+AGG + chr2.1:28425800-28425819 MS.gene039177:intron 15.0%
!! AGAGTTAATTATACAAATAA+GGG + chr2.1:28425801-28425820 MS.gene039177:intron 15.0%
!!! TATTTTAAATGACTTATTAG+AGG + chr2.1:28425210-28425229 MS.gene039177:intron 15.0%
!!! TTTAAAATAAGCTCTAAAAA+AGG - chr2.1:28425199-28425218 None:intergenic 15.0%
!! AATAAAACTTTCATCAACAA+GGG - chr2.1:28425092-28425111 None:intergenic 20.0%
!! TAATTAACTCTTAGAAATAG+TGG - chr2.1:28425792-28425811 None:intergenic 20.0%
!! TATGTATCTTAACTATTTGA+AGG + chr2.1:28425843-28425862 MS.gene039177:intron 20.0%
! AGCAATTAAAGATTCACAAA+TGG - chr2.1:28424871-28424890 None:intergenic 25.0%
! ATCATCTTAGAAATTGTGAT+TGG - chr2.1:28425579-28425598 None:intergenic 25.0%
! ATTGTTAAAGAGTCTCAAAT+CGG + chr2.1:28425487-28425506 MS.gene039177:intron 25.0%
! ATTTGAAGGTAGTTGAAATT+TGG + chr2.1:28425857-28425876 MS.gene039177:intron 25.0%
! GAATAAAACTTTCATCAACA+AGG - chr2.1:28425093-28425112 None:intergenic 25.0%
! GCAATTAAAGATTCACAAAT+GGG - chr2.1:28424870-28424889 None:intergenic 25.0%
!! CATATAATTGATTCATGTGA+CGG - chr2.1:28425827-28425846 None:intergenic 25.0%
!! CTCTAAAAAATCGATTTATG+AGG - chr2.1:28425544-28425563 None:intergenic 25.0%
!! GCTTAGAATTTGTTTATCAT+TGG + chr2.1:28425048-28425067 MS.gene039177:intron 25.0%
!! GCTTATTAAAATGTGCTTTT+CGG + chr2.1:28425307-28425326 MS.gene039177:intron 25.0%
!!! CTCATAAATCGATTTTTTAG+AGG + chr2.1:28425542-28425561 MS.gene039177:intron 25.0%
!!! GATTTTTTAGAGGTTGAATT+TGG + chr2.1:28425552-28425571 MS.gene039177:intron 25.0%
AATAAGCTAAAAGCAGATCA+TGG - chr2.1:28425294-28425313 None:intergenic 30.0%
AATAGATCTATGAAGTTGGA+AGG + chr2.1:28426026-28426045 MS.gene039177:intron 30.0%
ACATGCAATGAATCATACAA+AGG - chr2.1:28425017-28425036 None:intergenic 30.0%
AGTACAGAGAAGAAGATTTA+AGG + chr2.1:28424772-28424791 MS.gene039177:CDS 30.0%
ATGGTTCATGTGTTTATAAG+TGG + chr2.1:28425716-28425735 MS.gene039177:intron 30.0%
GGTTCATTTGTAACAACAAA+GGG - chr2.1:28424806-28424825 None:intergenic 30.0%
GTGAAATAGATCTATGAAGT+TGG + chr2.1:28426022-28426041 MS.gene039177:intron 30.0%
TAACTCTTAGAAATAGTGGT+CGG - chr2.1:28425788-28425807 None:intergenic 30.0%
TCGGAACATGTATTTATAAG+TGG + chr2.1:28425506-28425525 MS.gene039177:intron 30.0%
TGGTTCATGTGTTTATAAGT+GGG + chr2.1:28425717-28425736 MS.gene039177:intron 30.0%
TTCAGTATATTGATGAGGTT+TGG + chr2.1:28424892-28424911 MS.gene039177:CDS 30.0%
TTCCATTATGAATGAGAACA+GGG - chr2.1:28424845-28424864 None:intergenic 30.0%
TTTCCATTATGAATGAGAAC+AGG - chr2.1:28424846-28424865 None:intergenic 30.0%
!! TTGATATTTTTCAGCATGCA+CGG + chr2.1:28425910-28425929 MS.gene039177:intron 30.0%
!! TTTGTTGTTACAAATGAACC+CGG + chr2.1:28424806-28424825 MS.gene039177:CDS 30.0%
!!! TTCTTGTTCTTCTCCTTTTT+TGG - chr2.1:28426062-28426081 None:intergenic 30.0%
AACTCTTAGAAATAGTGGTC+GGG - chr2.1:28425787-28425806 None:intergenic 35.0%
AAGTGATTCTGCTAGATTAC+TGG + chr2.1:28424691-28424710 MS.gene039177:CDS 35.0%
AGTGATTCTGCTAGATTACT+GGG + chr2.1:28424692-28424711 MS.gene039177:CDS 35.0%
ATAATTCTCTCCACACAAGT+CGG + chr2.1:28425741-28425760 MS.gene039177:intron 35.0%
ATCCCTGTTCTCATTCATAA+TGG + chr2.1:28424840-28424859 MS.gene039177:CDS 35.0%
CATACACCTTATCTTGATCA+GGG - chr2.1:28426315-28426334 None:intergenic 35.0%
CCATTCTACACTTGGTTTAA+AGG + chr2.1:28426190-28426209 MS.gene039177:CDS 35.0%
CCTTTAAACCAAGTGTAGAA+TGG - chr2.1:28426193-28426212 None:intergenic 35.0%
GACAAAAGATGACATGAACA+TGG + chr2.1:28425697-28425716 MS.gene039177:intron 35.0%
GCTATCATGTTTCCGTAATT+GGG + chr2.1:28425633-28425652 MS.gene039177:intron 35.0%
GGGTTCATTTGTAACAACAA+AGG - chr2.1:28424807-28424826 None:intergenic 35.0%
GGTTCATGTGTTTATAAGTG+GGG + chr2.1:28425718-28425737 MS.gene039177:intron 35.0%
TGCTATCATGTTTCCGTAAT+TGG + chr2.1:28425632-28425651 MS.gene039177:intron 35.0%
TGCTGTTCAGTATATTGATG+AGG + chr2.1:28424887-28424906 MS.gene039177:CDS 35.0%
TGGTTCGTAGACTAAATGAT+GGG - chr2.1:28425662-28425681 None:intergenic 35.0%
TTCATCAACAAGGGACAAAA+GGG - chr2.1:28425083-28425102 None:intergenic 35.0%
TTTAAAGGCTATGAGACCTT+TGG + chr2.1:28426205-28426224 MS.gene039177:CDS 35.0%
TTTCATCAACAAGGGACAAA+AGG - chr2.1:28425084-28425103 None:intergenic 35.0%
! ACAGGGATTTTCTTATGAAC+CGG - chr2.1:28424828-28424847 None:intergenic 35.0%
! AGAATAGCCTTAGCTGAAAA+GGG + chr2.1:28424738-28424757 MS.gene039177:CDS 35.0%
! ATCTTTTGTCCGATGTGATT+GGG - chr2.1:28425687-28425706 None:intergenic 35.0%
! GACATGTGAATAAGCTGTTT+TGG - chr2.1:28425272-28425291 None:intergenic 35.0%
! GGCTGATTATGTTGATAAGA+AGG + chr2.1:28424974-28424993 MS.gene039177:CDS 35.0%
! TTGGTTCGTAGACTAAATGA+TGG - chr2.1:28425663-28425682 None:intergenic 35.0%
! TTTGATACCCTTTTCAGCTA+AGG - chr2.1:28424748-28424767 None:intergenic 35.0%
AGAGATCACAAGCTAGATTC+TGG + chr2.1:28424952-28424971 MS.gene039177:CDS 40.0%
AGGAACCTTTGGACCAAAAA+AGG + chr2.1:28426046-28426065 MS.gene039177:CDS 40.0%
ATGAAGTTGGAAGGAACCTT+TGG + chr2.1:28426035-28426054 MS.gene039177:CDS 40.0%
CACTCATTCCATTCTACACT+TGG + chr2.1:28426182-28426201 MS.gene039177:CDS 40.0%
CATAGAAGCCCTTAAACTCT+TGG + chr2.1:28426099-28426118 MS.gene039177:CDS 40.0%
CCATACACCTTATCTTGATC+AGG - chr2.1:28426316-28426335 None:intergenic 40.0%
CCTGATCAAGATAAGGTGTA+TGG + chr2.1:28426313-28426332 MS.gene039177:CDS 40.0%
CTCTACATTGATGTTGCCAA+AGG - chr2.1:28426224-28426243 None:intergenic 40.0%
CTCTTGCTCCAAGAGTTTAA+GGG - chr2.1:28426110-28426129 None:intergenic 40.0%
GAGAAAAACAACAGCTACCT+AGG - chr2.1:28425962-28425981 None:intergenic 40.0%
GAGATCACAAGCTAGATTCT+GGG + chr2.1:28424953-28424972 MS.gene039177:CDS 40.0%
GATCTCTGATAAGGATCAGA+AGG - chr2.1:28424939-28424958 None:intergenic 40.0%
GATTACTGGGTAAGTCCATT+TGG + chr2.1:28424705-28424724 MS.gene039177:CDS 40.0%
GGCTTCTATGAATTCCTTCT+TGG - chr2.1:28426089-28426108 None:intergenic 40.0%
TAAGGATCAGAAGGCAACAA+AGG - chr2.1:28424930-28424949 None:intergenic 40.0%
TAAGGTGTATGGCTTCATTG+TGG + chr2.1:28426324-28426343 MS.gene039177:CDS 40.0%
TGGCAACATCAATGTAGAGA+AGG + chr2.1:28426225-28426244 MS.gene039177:CDS 40.0%
! CAGAATAGCCTTAGCTGAAA+AGG + chr2.1:28424737-28424756 MS.gene039177:CDS 40.0%
! CAGGGATTTTCTTATGAACC+GGG - chr2.1:28424827-28424846 None:intergenic 40.0%
! CATCTTTTGTCCGATGTGAT+TGG - chr2.1:28425688-28425707 None:intergenic 40.0%
! CTAGCTTGTGATCTCTGATA+AGG - chr2.1:28424948-28424967 None:intergenic 40.0%
! TACTTTGGAGGAGACAAGAT+TGG + chr2.1:28426145-28426164 MS.gene039177:CDS 40.0%
!! AATGATGGGTAGCCCAATTA+CGG - chr2.1:28425648-28425667 None:intergenic 40.0%
!!! AGGAGACAAGATTGGTTTTG+TGG + chr2.1:28426153-28426172 MS.gene039177:CDS 40.0%
!!! CTTCTCCTTTTTTGGTCCAA+AGG - chr2.1:28426054-28426073 None:intergenic 40.0%
AAACAACAGCTACCTAGGCT+AGG - chr2.1:28425957-28425976 None:intergenic 45.0%
AAACTCTTGGAGCAAGAGCT+GGG + chr2.1:28426112-28426131 MS.gene039177:CDS 45.0%
AATGCCCCAAGTTCATTGCT+TGG + chr2.1:28426248-28426267 MS.gene039177:CDS 45.0%
AGAACAAGAAGCTGCCAAGA+AGG + chr2.1:28426072-28426091 MS.gene039177:CDS 45.0%
ATCTTGATCAGGGAGTGACT+TGG - chr2.1:28426305-28426324 None:intergenic 45.0%
ATGCCCCAAGTTCATTGCTT+GGG + chr2.1:28426249-28426268 MS.gene039177:CDS 45.0%
ATGGCTTCATTGTGGAGATC+AGG + chr2.1:28426332-28426351 MS.gene039177:CDS 45.0%
ATTCTGACCCTCATGCCAAA+TGG - chr2.1:28424723-28424742 None:intergenic 45.0%
CTCAACTTGCATGCATCTCT+TGG - chr2.1:28426275-28426294 None:intergenic 45.0%
CTGGGAGACAAGACTTACTT+TGG + chr2.1:28426130-28426149 MS.gene039177:CDS 45.0%
GCAAGTAATAGTCCTAGCCT+AGG + chr2.1:28425942-28425961 MS.gene039177:intron 45.0%
GCTCTTGCTCCAAGAGTTTA+AGG - chr2.1:28426111-28426130 None:intergenic 45.0%
GGAGACAAGACTTACTTTGG+AGG + chr2.1:28426133-28426152 MS.gene039177:CDS 45.0%
GGTAAGTCCATTTGGCATGA+GGG + chr2.1:28424713-28424732 MS.gene039177:CDS 45.0%
GTCACTCCCTGATCAAGATA+AGG + chr2.1:28426306-28426325 MS.gene039177:CDS 45.0%
GTGGAGATCAGGAAGAAGTT+TGG + chr2.1:28426343-28426362 MS.gene039177:CDS 45.0%
TAAACTCTTGGAGCAAGAGC+TGG + chr2.1:28426111-28426130 MS.gene039177:CDS 45.0%
TTGGCCCAAGCAATGAACTT+GGG - chr2.1:28426256-28426275 None:intergenic 45.0%
!!! CGGTTTTGTGGTGTTGTGTT+AGG + chr2.1:28425761-28425780 MS.gene039177:intron 45.0%
CGAACCAAGCCCAATCACAT+CGG + chr2.1:28425675-28425694 MS.gene039177:intron 50.0%
CTTGGCCCAAGCAATGAACT+TGG - chr2.1:28426257-28426276 None:intergenic 50.0%
GGGTAAGTCCATTTGGCATG+AGG + chr2.1:28424712-28424731 MS.gene039177:CDS 50.0%
TGGCCCAAGCAATGAACTTG+GGG - chr2.1:28426255-28426274 None:intergenic 50.0%
TTGTCCGATGTGATTGGGCT+TGG - chr2.1:28425682-28425701 None:intergenic 50.0%
!! CACCACAAAACCGACTTGTG+TGG - chr2.1:28425754-28425773 None:intergenic 50.0%
!! CTCCACACAAGTCGGTTTTG+TGG + chr2.1:28425749-28425768 MS.gene039177:intron 50.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 28424681 28426375 28424681 ID=MS.gene039177
chr2.1 mRNA 28424681 28426375 28424681 ID=MS.gene039177.t1;Parent=MS.gene039177
chr2.1 exon 28424681 28424995 28424681 ID=MS.gene039177.t1.exon1;Parent=MS.gene039177.t1
chr2.1 CDS 28424681 28424995 28424681 ID=cds.MS.gene039177.t1;Parent=MS.gene039177.t1
chr2.1 exon 28426031 28426375 28426031 ID=MS.gene039177.t1.exon2;Parent=MS.gene039177.t1
chr2.1 CDS 28426031 28426375 28426031 ID=cds.MS.gene039177.t1;Parent=MS.gene039177.t1
Gene Sequence

>MS.gene039177

ATGGCTGATGAAGTGATTCTGCTAGATTACTGGGTAAGTCCATTTGGCATGAGGGTCAGAATAGCCTTAGCTGAAAAGGGTATCAAACATGAGTACAGAGAAGAAGATTTAAGGAACAAGAGCCCTTTGTTGTTACAAATGAACCCGGTTCATAAGAAAATCCCTGTTCTCATTCATAATGGAAAACCCATTTGTGAATCTTTAATTGCTGTTCAGTATATTGATGAGGTTTGGAATGAGAAATCTCCTTTGTTGCCTTCTGATCCTTATCAGAGATCACAAGCTAGATTCTGGGCTGATTATGTTGATAAGAAGGTATATAAATTTACACAACCTTTGTATGATTCATTGCATGTGATTGTTTGTTGCTTAGAATTTGTTTATCATTGGTTTTGTTGACCCTTTTGTCCCTTGTTGATGAAAGTTTTATTCTTTTGCATTTTTCAGTATTAATTCTTTAATTAATTCTTTTGCATGTGATTGTTTGTGTTTTTTTTTACATTTAAGAAATTAAACCTTTTTTAGAGCTTATTTTAAATGACTTATTAGAGGTTTATAGCATATTTGAGACTGTTTTCTGAGAGTTTACCAAAACAGCTTATTCACATGTCCATGATCTGCTTTTAGCTTATTAAAATGTGCTTTTCGGCTTAGTTTCATAACTCAAAGATAGCTTGCTTATGAAAGCAACTTATAGTTTATATACACTTATAAATAAGTTTACATAAATTAATTTTTGCTTTAAAAATAGTTTATATATGAGCACTTCTATGATAAAACTAGCTACTTAACTAAGCTATTAAGTTATTGTTAAAGAGTCTCAAATCGGAACATGTATTTATAAGTGGAGACAGTTCTCGCCTCATAAATCGATTTTTTAGAGGTTGAATTTGGTCCAATCACAATTTCTAAGATGATATCAAAGTCTCTGATAAGATCTATTGAGTCACGTGCTATCATGTTTCCGTAATTGGGCTACCCATCATTTAGTCTACGAACCAAGCCCAATCACATCGGACAAAAGATGACATGAACATGGTTCATGTGTTTATAAGTGGGGATAATTCTCTCCACACAAGTCGGTTTTGTGGTGTTGTGTTAGGCCCGACCACTATTTCTAAGAGTTAATTATACAAATAAGGGCCGTCACATGAATCAATTATATGTATCTTAACTATTTGAAGGTAGTTGAAATTTGGAACACTTTTCTTTTGAACAATACAAGCTATTTGATATTTTTCAGCATGCACGGTCACTATTAGCAAGTAATAGTCCTAGCCTAGGTAGCTGTTGTTTTTCTCGTTATTGCATTTGATGATCTAATTGTGTGTGATTCTCATTGTGAAATAGATCTATGAAGTTGGAAGGAACCTTTGGACCAAAAAAGGAGAAGAACAAGAAGCTGCCAAGAAGGAATTCATAGAAGCCCTTAAACTCTTGGAGCAAGAGCTGGGAGACAAGACTTACTTTGGAGGAGACAAGATTGGTTTTGTGGATGTAGCACTCATTCCATTCTACACTTGGTTTAAAGGCTATGAGACCTTTGGCAACATCAATGTAGAGAAGGAATGCCCCAAGTTCATTGCTTGGGCCAAGAGATGCATGCAAGTTGAGAGTGTTTCCAAGTCACTCCCTGATCAAGATAAGGTGTATGGCTTCATTGTGGAGATCAGGAAGAAGTTTGGCCTCGAGTAG
Protein sequence

>MS.gene039177.t1

MADEVILLDYWVSPFGMRVRIALAEKGIKHEYREEDLRNKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQYIDEVWNEKSPLLPSDPYQRSQARFWADYVDKKIYEVGRNLWTKKGEEQEAAKKEFIEALKLLEQELGDKTYFGGDKIGFVDVALIPFYTWFKGYETFGNINVEKECPKFIAWAKRCMQVESVSKSLPDQDKVYGFIVEIRKKFGLE