AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065586

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065586.t1 MTR_2g070150 94.118 204 12 0 1 204 1 204 1.22e-146 407
MS.gene065586.t1 MTR_2g070140 95.074 203 10 0 17 219 1 203 1.03e-145 404
MS.gene065586.t1 MTR_2g070180 85.514 214 31 0 1 214 1 214 5.40e-142 395
MS.gene065586.t1 MTR_2g070130 77.626 219 49 0 1 219 1 219 1.08e-134 377
MS.gene065586.t1 MTR_2g070210 75.566 221 52 1 1 219 1 221 2.93e-128 361
MS.gene065586.t1 MTR_2g070200 70.136 221 64 2 1 219 1 221 6.04e-118 335
MS.gene065586.t1 MTR_2g070060 66.210 219 74 0 1 219 1 219 5.16e-112 320
MS.gene065586.t1 MTR_2g070070 65.297 219 76 0 1 219 1 219 3.44e-107 307
MS.gene065586.t1 MTR_3g467420 63.721 215 78 0 5 219 10 224 2.00e-106 306
MS.gene065586.t1 MTR_8g056940 65.297 219 76 0 1 219 1 219 1.78e-103 298
MS.gene065586.t1 MTR_3g467430 59.908 217 87 0 3 219 8 224 2.09e-100 290
MS.gene065586.t1 MTR_2g070110 62.100 219 82 1 1 219 1 218 2.11e-99 288
MS.gene065586.t1 MTR_2g070120 61.972 213 81 0 1 213 1 213 8.51e-95 276
MS.gene065586.t1 MTR_4g124130 58.182 220 91 1 1 219 1 220 4.25e-94 274
MS.gene065586.t1 MTR_5g076900 52.511 219 102 2 2 219 4 221 6.82e-81 241
MS.gene065586.t1 MTR_0186s0030 67.376 141 46 0 1 141 1 141 3.19e-65 198
MS.gene065586.t1 MTR_1g090060 44.762 210 111 3 4 209 3 211 1.11e-55 177
MS.gene065586.t1 MTR_8g087425 41.935 217 123 2 2 216 3 218 2.01e-53 171
MS.gene065586.t1 MTR_7g065740 44.340 212 110 5 3 209 6 214 1.71e-51 166
MS.gene065586.t1 MTR_4g019790 43.541 209 113 4 4 209 7 213 7.75e-51 164
MS.gene065586.t1 MTR_4g059730 42.056 214 117 4 1 209 1 212 2.58e-50 163
MS.gene065586.t1 MTR_7g065750 43.541 209 112 5 3 207 6 212 4.19e-50 162
MS.gene065586.t1 MTR_7g065720 42.453 212 114 6 3 209 6 214 6.84e-50 162
MS.gene065586.t1 MTR_3g099757 40.976 205 118 2 3 205 4 207 4.16e-49 160
MS.gene065586.t1 MTR_7g065660 40.476 210 120 4 3 209 6 213 6.04e-49 160
MS.gene065586.t1 MTR_1g090100 44.712 208 110 3 5 208 3 209 1.50e-48 159
MS.gene065586.t1 MTR_5g040430 36.967 211 126 2 2 205 5 215 3.42e-48 158
MS.gene065586.t1 MTR_4g019780 39.234 209 124 2 3 209 7 214 4.05e-48 157
MS.gene065586.t1 MTR_8g087410 42.157 204 115 2 4 205 6 208 7.78e-48 157
MS.gene065586.t1 MTR_5g037380 40.455 220 122 5 2 212 3 222 1.69e-47 156
MS.gene065586.t1 MTR_7g065630 40.000 210 117 5 3 209 24 227 1.13e-46 154
MS.gene065586.t1 MTR_1g090150 38.739 222 122 6 3 216 2 217 3.24e-46 153
MS.gene065586.t1 MTR_1g090070 39.810 211 121 4 4 209 9 218 4.19e-46 152
MS.gene065586.t1 MTR_7g065710 40.952 210 119 5 1 209 1 206 1.27e-45 151
MS.gene065586.t1 MTR_7g065270 40.191 209 120 5 3 208 6 212 3.37e-45 150
MS.gene065586.t1 MTR_7g065590 37.619 210 126 4 3 209 6 213 8.10e-45 149
MS.gene065586.t1 MTR_7g065600 38.710 217 125 5 3 216 6 217 4.37e-44 147
MS.gene065586.t1 MTR_7g065290 40.191 209 120 5 3 208 6 212 6.31e-44 147
MS.gene065586.t1 MTR_6g080440 40.314 191 109 3 18 205 17 205 7.29e-44 147
MS.gene065586.t1 MTR_1g090090 42.105 209 116 4 4 208 3 210 1.08e-43 146
MS.gene065586.t1 MTR_8g061950 37.736 212 123 3 3 205 4 215 4.71e-43 145
MS.gene065586.t1 MTR_7g065265 39.234 209 122 5 3 208 6 212 6.29e-43 144
MS.gene065586.t1 MTR_7g065700 41.905 210 117 5 1 209 4 209 7.74e-43 144
MS.gene065586.t1 MTR_1g115195 39.810 211 118 5 1 205 1 208 1.16e-42 143
MS.gene065586.t1 MTR_7g065680 40.476 210 116 5 3 209 6 209 3.59e-42 142
MS.gene065586.t1 MTR_7g065230 38.942 208 119 5 3 208 6 207 5.52e-42 142
MS.gene065586.t1 MTR_7g065640 37.500 208 111 4 3 209 6 195 2.08e-41 140
MS.gene065586.t1 MTR_7g065260 41.489 188 105 5 3 187 13 198 6.30e-36 126
MS.gene065586.t1 MTR_2g072120 67.123 73 23 1 47 118 1 73 5.68e-31 109
MS.gene065586.t1 MTR_4g134370 30.114 176 96 5 3 159 14 181 2.57e-15 72.4
MS.gene065586.t1 MTR_4g134380 30.994 171 99 5 4 159 15 181 6.06e-15 71.2
MS.gene065586.t1 MTR_4g134380 30.909 165 95 5 4 153 15 175 9.70e-14 67.0
MS.gene065586.t1 MTR_4g043640 41.176 68 33 1 129 189 18 85 3.42e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065586.t1 AT1G78380 67.593 216 70 0 1 216 1 216 1.60e-111 318
MS.gene065586.t1 AT1G17180 64.384 219 78 0 1 219 1 219 3.69e-111 318
MS.gene065586.t1 AT1G78340 64.019 214 77 0 1 214 1 214 5.82e-107 307
MS.gene065586.t1 AT1G78370 65.116 215 75 0 1 215 1 215 6.41e-107 306
MS.gene065586.t1 AT1G17170 62.557 219 81 1 1 219 1 218 2.18e-105 303
MS.gene065586.t1 AT1G78360 62.727 220 81 1 1 219 1 220 6.99e-105 301
MS.gene065586.t1 AT1G78320 64.019 214 77 0 1 214 1 214 4.20e-103 297
MS.gene065586.t1 AT1G17190 57.674 215 91 0 3 217 4 218 1.85e-95 278
MS.gene065586.t1 AT1G53680 55.708 219 95 2 3 219 6 224 1.03e-92 271
MS.gene065586.t1 AT3G43800 54.167 216 95 3 3 214 4 219 8.97e-82 243
MS.gene065586.t1 AT1G78320 55.140 214 69 1 1 214 1 187 3.59e-81 241
MS.gene065586.t1 AT2G29420 41.463 205 117 2 2 204 7 210 1.19e-55 177
MS.gene065586.t1 AT2G29450 46.860 207 103 5 3 204 5 209 2.02e-53 171
MS.gene065586.t1 AT3G09270 41.232 211 119 4 3 209 5 214 2.37e-52 168
MS.gene065586.t1 AT2G29440 44.660 206 108 4 3 204 5 208 7.76e-52 167
MS.gene065586.t1 AT2G29490 41.121 214 120 4 3 212 6 217 2.05e-51 166
MS.gene065586.t1 AT2G29480 40.092 217 124 4 3 215 6 220 1.40e-49 161
MS.gene065586.t1 AT1G10360 41.860 215 117 4 2 208 3 217 2.47e-49 160
MS.gene065586.t1 AT1G59700 41.892 222 120 5 3 215 5 226 1.20e-48 159
MS.gene065586.t1 AT2G29460 38.249 217 128 4 3 215 6 220 4.51e-48 157
MS.gene065586.t1 AT2G29470 39.631 217 124 5 5 216 8 222 5.58e-48 157
MS.gene065586.t1 AT1G59670 43.498 223 115 5 3 215 5 226 1.09e-47 157
MS.gene065586.t1 AT1G10370 39.269 219 125 4 2 212 3 221 1.39e-46 154
MS.gene065586.t1 AT1G74590 34.529 223 132 3 3 215 6 224 5.81e-46 152
MS.gene065586.t1 AT1G27130 37.209 215 126 4 3 208 5 219 5.24e-43 144
MS.gene065586.t1 AT1G69930 37.915 211 124 3 5 208 13 223 1.08e-41 141
MS.gene065586.t1 AT1G27140 40.376 213 117 4 3 205 5 217 1.11e-41 142
MS.gene065586.t1 AT5G62480 34.081 223 135 3 3 214 7 228 1.42e-41 141
MS.gene065586.t1 AT1G69920 36.726 226 125 6 5 218 35 254 2.90e-39 135
MS.gene065586.t1 AT5G62480 32.571 175 81 3 3 168 7 153 6.85e-25 97.8
MS.gene065586.t1 AT5G62480 32.571 175 82 3 3 168 7 154 7.00e-25 97.8

Find 61 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCTACACTTGGTTTAA+AGG 0.105597 2.2:+21882022 MS.gene065586:CDS
AGTACAAAGAAGAAGATTTA+AGG 0.224924 2.2:+21880850 MS.gene065586:CDS
GTGAAATAGATCTATGAAAT+TGG 0.256148 2.2:+21881854 MS.gene065586:intron
TTCAGTATATTGATGAAGTT+TGG 0.281776 2.2:+21880970 MS.gene065586:CDS
AAGTGATTCTGCTAGATTAC+TGG 0.343179 2.2:+21880769 MS.gene065586:CDS
ATGAAATTGGAAAGAACCTT+TGG 0.349218 2.2:+21881867 MS.gene065586:CDS
CTCAACCTGCATGCATCTCT+TGG 0.377767 2.2:-21882104 None:intergenic
CACTTATTCCATTCTACACT+TGG 0.395366 2.2:+21882014 MS.gene065586:CDS
TTACCATTATGAATGAGAAC+AGG 0.399703 2.2:-21880921 None:intergenic
AGAGATCACAAGCTAGATTC+TGG 0.406790 2.2:+21881030 MS.gene065586:CDS
TAGAATAGCCCTAGCTGAAA+AGG 0.409606 2.2:+21880815 MS.gene065586:CDS
ATCCCTGTTCTCATTCATAA+TGG 0.420755 2.2:+21880918 MS.gene065586:CDS
AGCAATTAAAGATTCACAAA+TGG 0.421376 2.2:-21880946 None:intergenic
GATTACTGGGCAAGTCCATT+TGG 0.423782 2.2:+21880783 MS.gene065586:CDS
GCAATTAAAGATTCACAAAT+GGG 0.429408 2.2:-21880945 None:intergenic
TTTAAAGGCTATGAGACCTT+TGG 0.432290 2.2:+21882037 MS.gene065586:CDS
AGATAAGGTGTATGGCTTCA+TGG 0.436683 2.2:+21882153 MS.gene065586:CDS
TTGGCCCAAGCAATGAACTT+AGG 0.437475 2.2:-21882085 None:intergenic
CAGATTGTTGGAGCAAGAGC+TGG 0.443595 2.2:+21881943 MS.gene065586:CDS
CGTAGAAGCTCACAGATTGT+TGG 0.445373 2.2:+21881931 MS.gene065586:CDS
CCATACACCTTATCTTGATC+GGG 0.449833 2.2:-21882145 None:intergenic
TACTTTGGAGGAGACAAGAT+TGG 0.453564 2.2:+21881977 MS.gene065586:CDS
CTGGGAGACAAGACCTACTT+TGG 0.463381 2.2:+21881962 MS.gene065586:CDS
TGGCCCAAGCAATGAACTTA+GGG 0.464217 2.2:-21882084 None:intergenic
ATGCCCTAAGTTCATTGCTT+GGG 0.465024 2.2:+21882081 MS.gene065586:CDS
ATGGCTTCATGGTGGAGATC+AGG 0.466419 2.2:+21882164 MS.gene065586:CDS
CTAGCTTGTGATCTCTGATA+AGG 0.467136 2.2:-21881023 None:intergenic
AATGCCCTAAGTTCATTGCT+TGG 0.469149 2.2:+21882080 MS.gene065586:CDS
AGAACAAGAAGCTGCGAAGA+AGG 0.470283 2.2:+21881904 MS.gene065586:CDS
CCCGATCAAGATAAGGTGTA+TGG 0.485562 2.2:+21882145 MS.gene065586:CDS
GTGGAGATCAGGAAGAGGTT+TGG 0.487397 2.2:+21882175 MS.gene065586:CDS
GAGATCACAAGCTAGATTCT+GGG 0.487661 2.2:+21881031 MS.gene065586:CDS
AAGAACCTTTGGACCAGAAA+AGG 0.491905 2.2:+21881878 MS.gene065586:CDS
ATTCTAACCCTCATGCCAAA+TGG 0.499058 2.2:-21880798 None:intergenic
CCTTTAAACCAAGTGTAGAA+TGG 0.500913 2.2:-21882022 None:intergenic
GCCATACACCTTATCTTGAT+CGG 0.506816 2.2:-21882146 None:intergenic
GGCTGATTATGTTGATAAGA+AGG 0.507102 2.2:+21881052 MS.gene065586:CDS
GGTTCATTTGAAGTAACAAA+GGG 0.524302 2.2:-21880881 None:intergenic
GGAGACAAGACCTACTTTGG+AGG 0.529678 2.2:+21881965 MS.gene065586:CDS
GGCAAGTCCATTTGGCATGA+GGG 0.529721 2.2:+21880791 MS.gene065586:CDS
ATCTTGATCGGGGACCGACT+TGG 0.544608 2.2:-21882134 None:intergenic
CTCTACATTGATGTTGCCAA+AGG 0.546992 2.2:-21882053 None:intergenic
AGAATAGCCCTAGCTGAAAA+GGG 0.548007 2.2:+21880816 MS.gene065586:CDS
AATCTTGTCTCCTCCAAAGT+AGG 0.551568 2.2:-21881975 None:intergenic
GTCGGTCCCCGATCAAGATA+AGG 0.552105 2.2:+21882138 MS.gene065586:CDS
AGTGATTCTGCTAGATTACT+GGG 0.559493 2.2:+21880770 MS.gene065586:CDS
GGGCAAGTCCATTTGGCATG+AGG 0.566009 2.2:+21880790 MS.gene065586:CDS
GAAGAGGTTTGGCCTTGAGT+AGG 0.568829 2.2:+21882186 MS.gene065586:CDS
TGGCAACATCAATGTAGAGA+AGG 0.574601 2.2:+21882057 MS.gene065586:CDS
GGGTTCATTTGAAGTAACAA+AGG 0.580169 2.2:-21880882 None:intergenic
CAGAATCACTTCATCAGCCA+TGG 0.584359 2.2:-21880757 None:intergenic
GGTTGAGAGTGTTTCCAAGT+CGG 0.584489 2.2:+21882120 MS.gene065586:CDS
TTGGGCCAAGAGATGCATGC+AGG 0.591022 2.2:+21882099 MS.gene065586:CDS
TCATGGTGGAGATCAGGAAG+AGG 0.595602 2.2:+21882170 MS.gene065586:CDS
AGATTGTTGGAGCAAGAGCT+GGG 0.596086 2.2:+21881944 MS.gene065586:CDS
GATCTCTGATAAGGATCAGA+AGG 0.596783 2.2:-21881014 None:intergenic
TACCATTATGAATGAGAACA+GGG 0.607264 2.2:-21880920 None:intergenic
TAAGGATCAGAAGGCAACAA+AGG 0.613337 2.2:-21881005 None:intergenic
TAACATCTCCAACCTACTCA+AGG 0.623527 2.2:-21882198 None:intergenic
TAAGGTGTATGGCTTCATGG+TGG 0.710103 2.2:+21882156 MS.gene065586:CDS
CATACACCTTATCTTGATCG+GGG 0.719375 2.2:-21882144 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTTATATAAACTATAAG+TGG - chr2.2:21881539-21881558 None:intergenic 15.0%
!!! CATATAATTGATTCATATTA+AGG - chr2.2:21881680-21881699 None:intergenic 15.0%
!!! TATTTTGAACAATTTATTAG+AGG + chr2.2:21881375-21881394 MS.gene065586:intron 15.0%
!! AATAACTTAATAGCTTAGTT+AGG - chr2.2:21881643-21881662 None:intergenic 20.0%
!! TAAGTTATTTATCCAAACAA+GGG + chr2.2:21881654-21881673 MS.gene065586:intron 20.0%
!! TTAAGTTATTTATCCAAACA+AGG + chr2.2:21881653-21881672 MS.gene065586:intron 20.0%
!!! GTTTTTTCATGAGAAAATAT+AGG + chr2.2:21881325-21881344 MS.gene065586:intron 20.0%
! AATAAAACTTTCACCAACAA+GGG - chr2.2:21881171-21881190 None:intergenic 25.0%
! AGCAATTAAAGATTCACAAA+TGG - chr2.2:21880949-21880968 None:intergenic 25.0%
! AGTACAAAGAAGAAGATTTA+AGG + chr2.2:21880850-21880869 MS.gene065586:CDS 25.0%
! GCAATTAAAGATTCACAAAT+GGG - chr2.2:21880948-21880967 None:intergenic 25.0%
! GTGAAATAGATCTATGAAAT+TGG + chr2.2:21881854-21881873 MS.gene065586:intron 25.0%
! TAAGTATTTGAAGATAGTTG+AGG + chr2.2:21881704-21881723 MS.gene065586:intron 25.0%
! TTCAGTATATTGATGAAGTT+TGG + chr2.2:21880970-21880989 MS.gene065586:CDS 25.0%
! TTTCTCATGAAAAAACTTAC+AGG - chr2.2:21881321-21881340 None:intergenic 25.0%
!! GCTTAGAATTTGTTTATCAT+TGG + chr2.2:21881127-21881146 MS.gene065586:intron 25.0%
!!! CTAATTGAAATGTGCTTTTT+CGG + chr2.2:21881476-21881495 MS.gene065586:intron 25.0%
AACTTAATAGCTTAGTTAGG+TGG - chr2.2:21881640-21881659 None:intergenic 30.0%
ACATGCAATGAATCATACAA+AGG - chr2.2:21881096-21881115 None:intergenic 30.0%
ATGAAATTGGAAAGAACCTT+TGG + chr2.2:21881867-21881886 MS.gene065586:CDS 30.0%
ATGCAATGAATCATACAAAG+GGG - chr2.2:21881094-21881113 None:intergenic 30.0%
ATTTGAAGATAGTTGAGGTT+TGG + chr2.2:21881709-21881728 MS.gene065586:intron 30.0%
CATGCAATGAATCATACAAA+GGG - chr2.2:21881095-21881114 None:intergenic 30.0%
GAATAAAACTTTCACCAACA+AGG - chr2.2:21881172-21881191 None:intergenic 30.0%
TACCATTATGAATGAGAACA+GGG - chr2.2:21880923-21880942 None:intergenic 30.0%
TATTAGCAAGTATTAGTCCT+TGG + chr2.2:21881775-21881794 MS.gene065586:intron 30.0%
TTACCATTATGAATGAGAAC+AGG - chr2.2:21880924-21880943 None:intergenic 30.0%
! GGTTCATTTGAAGTAACAAA+GGG - chr2.2:21880884-21880903 None:intergenic 30.0%
AAGAAAAACAACAGTCACCA+AGG - chr2.2:21881795-21881814 None:intergenic 35.0%
AAGTGATTCTGCTAGATTAC+TGG + chr2.2:21880769-21880788 MS.gene065586:CDS 35.0%
AGTGATTCTGCTAGATTACT+GGG + chr2.2:21880770-21880789 MS.gene065586:CDS 35.0%
ATCCCTGTTCTCATTCATAA+TGG + chr2.2:21880918-21880937 MS.gene065586:CDS 35.0%
CACTTATTCCATTCTACACT+TGG + chr2.2:21882014-21882033 MS.gene065586:CDS 35.0%
CCATTCTACACTTGGTTTAA+AGG + chr2.2:21882022-21882041 MS.gene065586:CDS 35.0%
CCTTTAAACCAAGTGTAGAA+TGG - chr2.2:21882025-21882044 None:intergenic 35.0%
TATGCTCTCAAAGATAGCTT+AGG + chr2.2:21881509-21881528 MS.gene065586:intron 35.0%
TTCATATTAAGGCCCTTGTT+TGG - chr2.2:21881669-21881688 None:intergenic 35.0%
TTTAAAGGCTATGAGACCTT+TGG + chr2.2:21882037-21882056 MS.gene065586:CDS 35.0%
! ACAGGGATTTTCTTGTGAAT+AGG - chr2.2:21880906-21880925 None:intergenic 35.0%
! CAGGGATTTTCTTGTGAATA+GGG - chr2.2:21880905-21880924 None:intergenic 35.0%
! GGCTGATTATGTTGATAAGA+AGG + chr2.2:21881052-21881071 MS.gene065586:CDS 35.0%
! GGGTTCATTTGAAGTAACAA+AGG - chr2.2:21880885-21880904 None:intergenic 35.0%
! TTCTTGTTCTTCTCCTTTTC+TGG - chr2.2:21881894-21881913 None:intergenic 35.0%
!! TGGATATTTTTCAGCTTGCA+TGG + chr2.2:21881748-21881767 MS.gene065586:intron 35.0%
AAGAACCTTTGGACCAGAAA+AGG + chr2.2:21881878-21881897 MS.gene065586:CDS 40.0%
AATCTTGTCTCCTCCAAAGT+AGG - chr2.2:21881978-21881997 None:intergenic 40.0%
AATGCCCTAAGTTCATTGCT+TGG + chr2.2:21882080-21882099 MS.gene065586:CDS 40.0%
AGAATAGCCCTAGCTGAAAA+GGG + chr2.2:21880816-21880835 MS.gene065586:CDS 40.0%
AGAGATCACAAGCTAGATTC+TGG + chr2.2:21881030-21881049 MS.gene065586:CDS 40.0%
AGATAAGGTGTATGGCTTCA+TGG + chr2.2:21882153-21882172 MS.gene065586:CDS 40.0%
ATGCCCTAAGTTCATTGCTT+GGG + chr2.2:21882081-21882100 MS.gene065586:CDS 40.0%
ATTCTAACCCTCATGCCAAA+TGG - chr2.2:21880801-21880820 None:intergenic 40.0%
CATACACCTTATCTTGATCG+GGG - chr2.2:21882147-21882166 None:intergenic 40.0%
CCATACACCTTATCTTGATC+GGG - chr2.2:21882148-21882167 None:intergenic 40.0%
CTCTACATTGATGTTGCCAA+AGG - chr2.2:21882056-21882075 None:intergenic 40.0%
GAGATCACAAGCTAGATTCT+GGG + chr2.2:21881031-21881050 MS.gene065586:CDS 40.0%
GATCTCTGATAAGGATCAGA+AGG - chr2.2:21881017-21881036 None:intergenic 40.0%
GCCATACACCTTATCTTGAT+CGG - chr2.2:21882149-21882168 None:intergenic 40.0%
TAAGGATCAGAAGGCAACAA+AGG - chr2.2:21881008-21881027 None:intergenic 40.0%
TAGAATAGCCCTAGCTGAAA+AGG + chr2.2:21880815-21880834 MS.gene065586:CDS 40.0%
TGGCAACATCAATGTAGAGA+AGG + chr2.2:21882057-21882076 MS.gene065586:CDS 40.0%
TTCACCAACAAGGGACAAAA+GGG - chr2.2:21881162-21881181 None:intergenic 40.0%
TTGGAACACTTACGAGCTAT+TGG + chr2.2:21881728-21881747 MS.gene065586:intron 40.0%
TTTCACCAACAAGGGACAAA+AGG - chr2.2:21881163-21881182 None:intergenic 40.0%
! CTAGCTTGTGATCTCTGATA+AGG - chr2.2:21881026-21881045 None:intergenic 40.0%
! CTTGATACCCTTTTCAGCTA+GGG - chr2.2:21880826-21880845 None:intergenic 40.0%
! TACTTTGGAGGAGACAAGAT+TGG + chr2.2:21881977-21881996 MS.gene065586:CDS 40.0%
AGAACAAGAAGCTGCGAAGA+AGG + chr2.2:21881904-21881923 MS.gene065586:CDS 45.0%
AGATTGTTGGAGCAAGAGCT+GGG + chr2.2:21881944-21881963 MS.gene065586:CDS 45.0%
CCCGATCAAGATAAGGTGTA+TGG + chr2.2:21882145-21882164 MS.gene065586:CDS 45.0%
CGTAGAAGCTCACAGATTGT+TGG + chr2.2:21881931-21881950 MS.gene065586:CDS 45.0%
GATTACTGGGCAAGTCCATT+TGG + chr2.2:21880783-21880802 MS.gene065586:CDS 45.0%
TAAGGTGTATGGCTTCATGG+TGG + chr2.2:21882156-21882175 MS.gene065586:CDS 45.0%
TGGCCCAAGCAATGAACTTA+GGG - chr2.2:21882087-21882106 None:intergenic 45.0%
TTGGCCCAAGCAATGAACTT+AGG - chr2.2:21882088-21882107 None:intergenic 45.0%
! GCTTGATACCCTTTTCAGCT+AGG - chr2.2:21880827-21880846 None:intergenic 45.0%
! TTGACCCTTTTGTCCCTTGT+TGG + chr2.2:21881155-21881174 MS.gene065586:intron 45.0%
!! CTTCTCCTTTTCTGGTCCAA+AGG - chr2.2:21881886-21881905 None:intergenic 45.0%
!! GGTTGAGAGTGTTTCCAAGT+CGG + chr2.2:21882120-21882139 MS.gene065586:CDS 45.0%
CAGATTGTTGGAGCAAGAGC+TGG + chr2.2:21881943-21881962 MS.gene065586:CDS 50.0%
CTCAACCTGCATGCATCTCT+TGG - chr2.2:21882107-21882126 None:intergenic 50.0%
CTGGGAGACAAGACCTACTT+TGG + chr2.2:21881962-21881981 MS.gene065586:CDS 50.0%
GGAGACAAGACCTACTTTGG+AGG + chr2.2:21881965-21881984 MS.gene065586:CDS 50.0%
GGCAAGTCCATTTGGCATGA+GGG + chr2.2:21880791-21880810 MS.gene065586:CDS 50.0%
GTGGAGATCAGGAAGAGGTT+TGG + chr2.2:21882175-21882194 MS.gene065586:CDS 50.0%
! ATGGCTTCATGGTGGAGATC+AGG + chr2.2:21882164-21882183 MS.gene065586:CDS 50.0%
! TCATGGTGGAGATCAGGAAG+AGG + chr2.2:21882170-21882189 MS.gene065586:CDS 50.0%
ATCTTGATCGGGGACCGACT+TGG - chr2.2:21882137-21882156 None:intergenic 55.0%
GGGCAAGTCCATTTGGCATG+AGG + chr2.2:21880790-21880809 MS.gene065586:CDS 55.0%
GTCGGTCCCCGATCAAGATA+AGG + chr2.2:21882138-21882157 MS.gene065586:CDS 55.0%
TTGGGCCAAGAGATGCATGC+AGG + chr2.2:21882099-21882118 MS.gene065586:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 21880759 21882207 21880759 ID=MS.gene065586
chr2.2 mRNA 21880759 21882207 21880759 ID=MS.gene065586.t1;Parent=MS.gene065586
chr2.2 exon 21880759 21881073 21880759 ID=MS.gene065586.t1.exon1;Parent=MS.gene065586.t1
chr2.2 CDS 21880759 21881073 21880759 ID=cds.MS.gene065586.t1;Parent=MS.gene065586.t1
chr2.2 exon 21881863 21882207 21881863 ID=MS.gene065586.t1.exon2;Parent=MS.gene065586.t1
chr2.2 CDS 21881863 21882207 21881863 ID=cds.MS.gene065586.t1;Parent=MS.gene065586.t1
Gene Sequence

>MS.gene065586

ATGGCTGATGAAGTGATTCTGCTAGATTACTGGGCAAGTCCATTTGGCATGAGGGTTAGAATAGCCCTAGCTGAAAAGGGTATCAAGCATGAGTACAAAGAAGAAGATTTAAGGAACAAGAGCCCTTTGTTACTTCAAATGAACCCTATTCACAAGAAAATCCCTGTTCTCATTCATAATGGTAAACCCATTTGTGAATCTTTAATTGCTGTTCAGTATATTGATGAAGTTTGGAATGAGAAATCTCCTTTGTTGCCTTCTGATCCTTATCAGAGATCACAAGCTAGATTCTGGGCTGATTATGTTGATAAGAAGGTATATAAATTTCAATACCCCTTTGTATGATTCATTGCATGTGATTGTTTGTTGCTTAGAATTTGTTTATCATTGGTTTTGTTGACCCTTTTGTCCCTTGTTGGTGAAAGTTTTATTCTTTTATATTTTTAGTAGTGTAGTATTAATTCTTTAATTAATTCTTTTGCATGTGATTGTTTGTGCTTCTTTTACATTTCTGAAATTTAAGTTTTATTTATTTAGTTTACATTTTTTTAAATTATTACCTGTAAGTTTTTTCATGAGAAAATATAGGACTGTGCATTCAGCTTAACTTAGAGCTTATTTTGAACAATTTATTAGAGGTAATTTATAGCATTTGTGAGAATGTTTTCTGAGTGTTAAGCAAAACAGTTTATTCATATGTCTATAATCTGCTTTTAGCTAATTGAAATGTGCTTTTTCGGCTTAATTTCATATGCTCTCAAAGATAGCTTAGGAAAACCACTTATAGTTTATATAAACTTATAGATAAGTTAATCTATGACAAATAACGCTTGTTATAAAAATAATTTATATTTGAGCACTTCTATGATAACAAGTAGCCACCTAACTAAGCTATTAAGTTATTTATCCAAACAAGGGCCTTAATATGAATCAATTATATGTTTCTAAGTATTTGAAGATAGTTGAGGTTTGGAACACTTACGAGCTATTGGATATTTTTCAGCTTGCATGGTCACTATTAGCAAGTATTAGTCCTTGGTGACTGTTGTTTTTCTTGTTATTACATTGATGATCTAATTGTGTGTGATTCTCATTGTGAAATAGATCTATGAAATTGGAAAGAACCTTTGGACCAGAAAAGGAGAAGAACAAGAAGCTGCGAAGAAGGAATTCGTAGAAGCTCACAGATTGTTGGAGCAAGAGCTGGGAGACAAGACCTACTTTGGAGGAGACAAGATTGGTTTTGTTGATGTAGCACTTATTCCATTCTACACTTGGTTTAAAGGCTATGAGACCTTTGGCAACATCAATGTAGAGAAGGAATGCCCTAAGTTCATTGCTTGGGCCAAGAGATGCATGCAGGTTGAGAGTGTTTCCAAGTCGGTCCCCGATCAAGATAAGGTGTATGGCTTCATGGTGGAGATCAGGAAGAGGTTTGGCCTTGAGTAG
Protein sequence

>MS.gene065586.t1

MADEVILLDYWASPFGMRVRIALAEKGIKHEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESLIAVQYIDEVWNEKSPLLPSDPYQRSQARFWADYVDKKIYEIGKNLWTRKGEEQEAAKKEFVEAHRLLEQELGDKTYFGGDKIGFVDVALIPFYTWFKGYETFGNINVEKECPKFIAWAKRCMQVESVSKSVPDQDKVYGFMVEIRKRFGLE