AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039179

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039179.t1 MTR_2g070180 89.401 217 23 0 1 217 1 217 3.66e-145 403
MS.gene039179.t1 MTR_2g070150 85.294 204 30 0 1 204 1 204 3.52e-133 372
MS.gene039179.t1 MTR_2g070130 78.972 214 45 0 1 214 1 214 2.52e-129 363
MS.gene039179.t1 MTR_2g070140 83.333 198 33 0 17 214 1 198 8.63e-126 353
MS.gene039179.t1 MTR_2g070210 72.350 217 58 1 1 215 1 217 3.09e-119 338
MS.gene039179.t1 MTR_2g070200 68.056 216 67 2 1 214 1 216 1.01e-109 314
MS.gene039179.t1 MTR_2g070060 62.150 214 81 0 1 214 1 214 8.82e-104 299
MS.gene039179.t1 MTR_2g070070 64.019 214 77 0 1 214 1 214 9.25e-102 293
MS.gene039179.t1 MTR_3g467420 59.048 210 86 0 5 214 10 219 3.39e-96 280
MS.gene039179.t1 MTR_2g070110 60.280 214 84 1 1 214 1 213 3.80e-94 274
MS.gene039179.t1 MTR_8g056940 61.682 214 82 0 1 214 1 214 7.26e-94 273
MS.gene039179.t1 MTR_3g467430 57.075 212 91 0 3 214 8 219 3.39e-92 270
MS.gene039179.t1 MTR_2g070120 59.624 213 86 0 1 213 1 213 3.43e-91 267
MS.gene039179.t1 MTR_4g124130 55.349 215 95 1 1 214 1 215 3.57e-85 251
MS.gene039179.t1 MTR_5g076900 51.852 216 102 2 2 216 4 218 8.09e-78 233
MS.gene039179.t1 MTR_0186s0030 66.667 141 47 0 1 141 1 141 1.42e-61 189
MS.gene039179.t1 MTR_1g090060 41.748 206 115 3 4 205 3 207 1.49e-49 161
MS.gene039179.t1 MTR_8g087425 39.806 206 121 2 2 205 3 207 1.01e-46 154
MS.gene039179.t1 MTR_5g040430 35.071 211 130 2 2 205 5 215 8.50e-46 151
MS.gene039179.t1 MTR_5g037380 40.376 213 118 5 2 205 3 215 2.50e-45 150
MS.gene039179.t1 MTR_7g065740 42.439 205 112 5 3 203 6 208 6.26e-45 149
MS.gene039179.t1 MTR_4g059730 39.234 209 122 3 1 205 1 208 1.87e-44 148
MS.gene039179.t1 MTR_7g065750 41.951 205 113 5 3 203 6 208 6.89e-44 147
MS.gene039179.t1 MTR_7g065720 40.000 205 117 5 3 203 6 208 1.66e-43 145
MS.gene039179.t1 MTR_3g099757 38.537 205 123 2 3 205 4 207 2.12e-43 145
MS.gene039179.t1 MTR_8g087410 40.196 204 119 2 4 205 6 208 5.21e-43 144
MS.gene039179.t1 MTR_1g090100 40.976 205 116 3 5 205 3 206 6.66e-43 144
MS.gene039179.t1 MTR_4g019780 38.835 206 121 4 3 205 7 210 1.10e-42 143
MS.gene039179.t1 MTR_1g090070 39.130 207 118 5 4 204 9 213 1.85e-42 143
MS.gene039179.t1 MTR_4g019790 41.379 203 114 5 4 203 7 207 2.39e-42 143
MS.gene039179.t1 MTR_7g065660 39.706 204 118 4 3 203 6 207 2.87e-42 142
MS.gene039179.t1 MTR_7g065630 37.561 205 119 5 3 204 24 222 3.40e-40 137
MS.gene039179.t1 MTR_1g090090 39.070 215 123 5 4 211 3 216 4.91e-40 137
MS.gene039179.t1 MTR_1g090150 38.426 216 123 6 3 214 2 211 6.26e-40 136
MS.gene039179.t1 MTR_7g065270 38.235 204 121 5 3 203 6 207 8.55e-40 136
MS.gene039179.t1 MTR_8g061950 34.419 215 132 3 3 208 4 218 3.63e-39 135
MS.gene039179.t1 MTR_6g080440 40.107 187 107 4 22 205 21 205 5.72e-39 134
MS.gene039179.t1 MTR_7g065590 36.275 204 125 4 3 203 6 207 1.33e-38 133
MS.gene039179.t1 MTR_7g065710 36.585 205 125 5 1 204 1 201 2.08e-37 130
MS.gene039179.t1 MTR_7g065265 37.864 206 123 5 3 205 6 209 2.71e-37 130
MS.gene039179.t1 MTR_7g065290 37.379 206 124 5 3 205 6 209 1.09e-36 128
MS.gene039179.t1 MTR_7g065230 37.931 203 118 5 3 203 6 202 1.46e-36 127
MS.gene039179.t1 MTR_7g065700 37.619 210 126 5 1 209 4 209 1.42e-35 125
MS.gene039179.t1 MTR_7g065600 35.784 204 126 4 3 203 6 207 1.62e-35 125
MS.gene039179.t1 MTR_1g115195 35.714 224 132 6 1 217 1 219 1.23e-34 123
MS.gene039179.t1 MTR_7g065680 43.210 162 87 4 3 161 6 165 1.46e-34 122
MS.gene039179.t1 MTR_7g065640 44.056 143 78 2 3 144 6 147 3.57e-33 119
MS.gene039179.t1 MTR_7g065260 37.968 187 111 5 3 186 13 197 8.63e-32 115
MS.gene039179.t1 MTR_2g072120 62.162 74 27 1 47 119 1 74 6.86e-29 103
MS.gene039179.t1 MTR_4g134370 29.714 175 96 5 4 159 15 181 4.91e-13 66.2
MS.gene039179.t1 MTR_4g134380 27.439 164 102 5 4 153 15 175 8.43e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039179.t1 AT1G78380 65.888 214 73 0 1 214 1 214 7.63e-106 304
MS.gene039179.t1 AT1G17180 62.150 214 81 0 1 214 1 214 4.53e-103 297
MS.gene039179.t1 AT1G78360 62.037 216 81 1 1 215 1 216 1.31e-99 288
MS.gene039179.t1 AT1G78370 61.682 214 82 0 1 214 1 214 2.28e-99 287
MS.gene039179.t1 AT1G78340 60.000 215 86 0 1 215 1 215 7.68e-99 286
MS.gene039179.t1 AT1G17170 62.150 214 80 1 1 214 1 213 8.21e-99 286
MS.gene039179.t1 AT1G78320 60.930 215 84 0 1 215 1 215 6.41e-97 281
MS.gene039179.t1 AT1G17190 58.491 212 88 0 3 214 4 215 3.41e-91 267
MS.gene039179.t1 AT1G53680 53.052 213 98 2 5 215 8 220 3.32e-85 252
MS.gene039179.t1 AT3G43800 55.760 217 92 3 3 215 4 220 3.04e-82 244
MS.gene039179.t1 AT1G78320 52.558 215 75 1 1 215 1 188 1.07e-75 226
MS.gene039179.t1 AT2G29420 40.976 205 118 3 2 204 7 210 8.61e-52 167
MS.gene039179.t1 AT3G09270 39.631 217 123 5 3 215 5 217 1.88e-47 156
MS.gene039179.t1 AT2G29450 42.029 207 113 5 3 204 5 209 2.78e-46 153
MS.gene039179.t1 AT2G29440 41.262 206 115 4 3 204 5 208 3.82e-46 152
MS.gene039179.t1 AT2G29490 38.835 206 120 4 3 204 6 209 1.25e-45 151
MS.gene039179.t1 AT1G59700 39.091 220 123 5 3 212 5 223 1.13e-43 146
MS.gene039179.t1 AT2G29460 37.864 206 122 4 3 204 6 209 1.29e-43 146
MS.gene039179.t1 AT1G10360 38.813 219 126 4 2 212 3 221 3.44e-43 145
MS.gene039179.t1 AT2G29480 37.379 206 123 4 3 204 6 209 5.34e-43 144
MS.gene039179.t1 AT1G59670 40.000 220 121 5 3 212 5 223 5.30e-41 139
MS.gene039179.t1 AT5G62480 34.513 226 138 3 1 216 5 230 6.00e-41 139
MS.gene039179.t1 AT1G10370 37.387 222 117 4 2 208 3 217 6.64e-41 139
MS.gene039179.t1 AT2G29470 37.073 205 122 5 5 204 8 210 7.24e-41 139
MS.gene039179.t1 AT1G74590 37.736 212 122 5 5 210 8 215 9.76e-40 136
MS.gene039179.t1 AT1G27140 38.249 217 124 4 3 209 5 221 1.07e-38 134
MS.gene039179.t1 AT1G27130 36.321 212 126 4 3 205 5 216 1.46e-37 130
MS.gene039179.t1 AT1G69930 36.058 208 126 3 5 205 13 220 3.84e-37 130
MS.gene039179.t1 AT1G69920 35.238 210 117 6 5 200 35 239 9.64e-34 121
MS.gene039179.t1 AT5G62480 27.876 226 127 4 1 216 5 204 4.21e-23 92.8
MS.gene039179.t1 AT5G62480 27.876 226 126 4 1 216 5 203 4.57e-23 92.8

Find 47 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATCACAAGCTTTATTT+TGG 0.121599 2.1:+28366094 MS.gene039179:CDS
TTGGGAGACAAAATTTATTA+TGG 0.221129 2.1:+28366971 MS.gene039179:CDS
TTCAGTATATTGATGAAGTT+TGG 0.281776 2.1:+28366034 MS.gene039179:CDS
CAAATTGTTGGAGCAAGAAT+TGG 0.293479 2.1:+28366952 MS.gene039179:CDS
AAGGAACCTTTGGGCCAAAA+AGG 0.311321 2.1:+28366886 MS.gene039179:CDS
AAGTGATTCTGCTAAATTAC+TGG 0.327147 2.1:+28365833 MS.gene039179:CDS
AAAGCTTGTGATTTCTGATA+AGG 0.353023 2.1:-28366087 None:intergenic
TTGACGTTGGAAGGAACCTT+TGG 0.357525 2.1:+28366876 MS.gene039179:CDS
CTCAATCTGCAGACATCTAT+TGG 0.364494 2.1:-28367113 None:intergenic
ATTCTTGCTCCAACAATTTG+TGG 0.381385 2.1:-28366949 None:intergenic
CAGAATAGCCCTAGCTGAAA+AGG 0.391467 2.1:+28365879 MS.gene039179:CDS
TTACCATTATGAATGAGAAC+AGG 0.399703 2.1:-28365985 None:intergenic
CATAGATGTCCACAAATTGT+TGG 0.405958 2.1:+28366940 MS.gene039179:CDS
TTTAAAAGTTATGAAACCTT+TGG 0.418179 2.1:+28367046 MS.gene039179:CDS
AATTACTGGGCAAGTCCATT+TGG 0.420131 2.1:+28365847 MS.gene039179:CDS
TTCAAAGTCTCTTCCTGATC+AGG 0.420326 2.1:+28367141 MS.gene039179:CDS
ATCCCTGTTCTCATTCATAA+TGG 0.420755 2.1:+28365982 MS.gene039179:CDS
CACTTATTCCATACTACACT+TGG 0.423079 2.1:+28367023 MS.gene039179:CDS
GCAAATAAAGATTCACAAAT+GGG 0.425268 2.1:-28366009 None:intergenic
GGCTGATTATATTGATAAGA+AGG 0.427339 2.1:+28366116 MS.gene039179:CDS
AGCAAATAAAGATTCACAAA+TGG 0.428415 2.1:-28366010 None:intergenic
TCATGGACCTTATCCTGATC+AGG 0.451856 2.1:-28367154 None:intergenic
TTGGCCCAAGCAATGAACTT+AGG 0.452050 2.1:-28367094 None:intergenic
AATAGATATTTGACGTTGGA+AGG 0.456845 2.1:+28366867 MS.gene039179:intron
GTCTCTTCCTGATCAGGATA+AGG 0.461296 2.1:+28367147 MS.gene039179:CDS
ATGCCCTAAGTTCATTGCTT+GGG 0.465024 2.1:+28367090 MS.gene039179:CDS
AATGCCCTAAGTTCATTGCT+TGG 0.469149 2.1:+28367089 MS.gene039179:CDS
TGACGTTGGAAGGAACCTTT+GGG 0.469728 2.1:+28366877 MS.gene039179:CDS
GACATCTATGAATTCTTTGT+TGG 0.470934 2.1:-28366927 None:intergenic
AAATTGTTGGAGCAAGAATT+GGG 0.479522 2.1:+28366953 MS.gene039179:CDS
TGGCCCAAGCAATGAACTTA+GGG 0.487336 2.1:-28367093 None:intergenic
TATTATGGAGGAGATAAGCT+TGG 0.494984 2.1:+28366986 MS.gene039179:CDS
ATTCTGACACTCATGCCAAA+TGG 0.508263 2.1:-28365862 None:intergenic
GGAGACAAAATTTATTATGG+AGG 0.514837 2.1:+28366974 MS.gene039179:CDS
GGTTCATTTGAAGTAACAAA+GGG 0.524302 2.1:-28365945 None:intergenic
CTCTAGACTGATCTTACCAA+AGG 0.536129 2.1:-28367062 None:intergenic
AGAATAGCCCTAGCTGAAAA+GGG 0.546394 2.1:+28365880 MS.gene039179:CDS
AGTGATTCTGCTAAATTACT+GGG 0.570622 2.1:+28365834 MS.gene039179:CDS
GTCAAATAGATATTTGACGT+TGG 0.578893 2.1:+28366863 MS.gene039179:intron
GGGTTCATTTGAAGTAACAA+AGG 0.580169 2.1:-28365946 None:intergenic
GATTTCTGATAAGGATCAGA+AGG 0.582641 2.1:-28366078 None:intergenic
CAGAATCACTTCATCAGCCA+TGG 0.586532 2.1:-28365821 None:intergenic
TGGTAAGATCAGTCTAGAGA+AGG 0.602196 2.1:+28367066 MS.gene039179:CDS
TACCATTATGAATGAGAACA+GGG 0.607264 2.1:-28365984 None:intergenic
TAAGGATCAGAAGGCAACAA+AGG 0.613337 2.1:-28366069 None:intergenic
TCAGCTCTACAATTAAGTCA+TGG 0.618125 2.1:-28367171 None:intergenic
ATGACTTAATTGTAGAGCTG+AGG 0.630926 2.1:+28367173 MS.gene039179:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATAAAATAAAGTTTAT+AGG - chr2.1:28366268-28366287 None:intergenic 10.0%
!!! TTTATAAAATTAGCTTATAT+TGG + chr2.1:28366288-28366307 MS.gene039179:intron 10.0%
!! AATTTGAAGATAATTGAAAT+TGG + chr2.1:28366414-28366433 MS.gene039179:intron 15.0%
!! ATTTGAAGATAATTGAAATT+GGG + chr2.1:28366415-28366434 MS.gene039179:intron 15.0%
!!! CATAATATTTTTTTTTTGAG+AGG - chr2.1:28366195-28366214 None:intergenic 15.0%
!! AACAAAATGATCAGTTAAAT+GGG - chr2.1:28366546-28366565 None:intergenic 20.0%
!! GTATTAATTAGAATTATAGC+TGG + chr2.1:28366702-28366721 MS.gene039179:intron 20.0%
!! TAAGCTATTTGTACAAATTA+GGG + chr2.1:28366361-28366380 MS.gene039179:intron 20.0%
!! TACACATTTCATTCATATTA+AGG - chr2.1:28366387-28366406 None:intergenic 20.0%
!! TTAAGCTATTTGTACAAATT+AGG + chr2.1:28366360-28366379 MS.gene039179:intron 20.0%
!! TTTAAAAGTTATGAAACCTT+TGG + chr2.1:28367046-28367065 MS.gene039179:CDS 20.0%
!! TTTGAAGATAATTGAAATTG+GGG + chr2.1:28366416-28366435 MS.gene039179:intron 20.0%
!!! TGATAAGAAGGTATATAAAT+TGG + chr2.1:28366128-28366147 MS.gene039179:intron 20.0%
! ACAAATGACTCAGTTATTAA+GGG + chr2.1:28366792-28366811 MS.gene039179:intron 25.0%
! ACTTTGCATTTATGATAAGA+AGG - chr2.1:28366652-28366671 None:intergenic 25.0%
! AGCAAAAAGAAGAAGATTTA+AGG + chr2.1:28365914-28365933 MS.gene039179:CDS 25.0%
! AGCAAATAAAGATTCACAAA+TGG - chr2.1:28366013-28366032 None:intergenic 25.0%
! CTTTGCATTTATGATAAGAA+GGG - chr2.1:28366651-28366670 None:intergenic 25.0%
! GAACAAAATGATCAGTTAAA+TGG - chr2.1:28366547-28366566 None:intergenic 25.0%
! GCAAATAAAGATTCACAAAT+GGG - chr2.1:28366012-28366031 None:intergenic 25.0%
! GTGAAATGAGTCAAAAAAAT+TGG + chr2.1:28366753-28366772 MS.gene039179:intron 25.0%
! TACAAATGACTCAGTTATTA+AGG + chr2.1:28366791-28366810 MS.gene039179:intron 25.0%
! TTCAGTATATTGATGAAGTT+TGG + chr2.1:28366034-28366053 MS.gene039179:CDS 25.0%
! TTGAAGATAATTGAAATTGG+GGG + chr2.1:28366417-28366436 MS.gene039179:intron 25.0%
! TTGGGAGACAAAATTTATTA+TGG + chr2.1:28366971-28366990 MS.gene039179:CDS 25.0%
!!! AGAAATCACAAGCTTTATTT+TGG + chr2.1:28366094-28366113 MS.gene039179:CDS 25.0%
!!! GAAATCACAAGCTTTATTTT+GGG + chr2.1:28366095-28366114 MS.gene039179:CDS 25.0%
AAAGCTTGTGATTTCTGATA+AGG - chr2.1:28366090-28366109 None:intergenic 30.0%
AAATTGTTGGAGCAAGAATT+GGG + chr2.1:28366953-28366972 MS.gene039179:CDS 30.0%
AAGTGATTCTGCTAAATTAC+TGG + chr2.1:28365833-28365852 MS.gene039179:CDS 30.0%
AATAGATATTTGACGTTGGA+AGG + chr2.1:28366867-28366886 MS.gene039179:intron 30.0%
AGTGATTCTGCTAAATTACT+GGG + chr2.1:28365834-28365853 MS.gene039179:CDS 30.0%
CGAATATTTATCATCATGCA+TGG + chr2.1:28366459-28366478 MS.gene039179:intron 30.0%
GACATCTATGAATTCTTTGT+TGG - chr2.1:28366930-28366949 None:intergenic 30.0%
GGAGACAAAATTTATTATGG+AGG + chr2.1:28366974-28366993 MS.gene039179:CDS 30.0%
GGCTGATTATATTGATAAGA+AGG + chr2.1:28366116-28366135 MS.gene039179:CDS 30.0%
GTCAAATAGATATTTGACGT+TGG + chr2.1:28366863-28366882 MS.gene039179:intron 30.0%
TACCATTATGAATGAGAACA+GGG - chr2.1:28365987-28366006 None:intergenic 30.0%
TTAAGTGTCTTGTCAAGTAT+TGG + chr2.1:28366620-28366639 MS.gene039179:intron 30.0%
TTACCATTATGAATGAGAAC+AGG - chr2.1:28365988-28366007 None:intergenic 30.0%
! CTTTTAAACCAAGTGTAGTA+TGG - chr2.1:28367034-28367053 None:intergenic 30.0%
! GGTTCATTTGAAGTAACAAA+GGG - chr2.1:28365948-28365967 None:intergenic 30.0%
ATCCCTGTTCTCATTCATAA+TGG + chr2.1:28365982-28366001 MS.gene039179:CDS 35.0%
ATGACTTAATTGTAGAGCTG+AGG + chr2.1:28367173-28367192 MS.gene039179:CDS 35.0%
ATTCTTGCTCCAACAATTTG+TGG - chr2.1:28366952-28366971 None:intergenic 35.0%
CAAATTGTTGGAGCAAGAAT+TGG + chr2.1:28366952-28366971 MS.gene039179:CDS 35.0%
CACTTATTCCATACTACACT+TGG + chr2.1:28367023-28367042 MS.gene039179:CDS 35.0%
CATAGATGTCCACAAATTGT+TGG + chr2.1:28366940-28366959 MS.gene039179:CDS 35.0%
GATCAGTTAAATGGGACAAA+GGG - chr2.1:28366538-28366557 None:intergenic 35.0%
GATTTCTGATAAGGATCAGA+AGG - chr2.1:28366081-28366100 None:intergenic 35.0%
TATTATGGAGGAGATAAGCT+TGG + chr2.1:28366986-28367005 MS.gene039179:CDS 35.0%
TCAGCTCTACAATTAAGTCA+TGG - chr2.1:28367174-28367193 None:intergenic 35.0%
TGATCAGTTAAATGGGACAA+AGG - chr2.1:28366539-28366558 None:intergenic 35.0%
! ACAGGGATTTTCTTGTGAAT+AGG - chr2.1:28365970-28365989 None:intergenic 35.0%
! CAGGGATTTTCTTGTGAATA+GGG - chr2.1:28365969-28365988 None:intergenic 35.0%
! GGGTTCATTTGAAGTAACAA+AGG - chr2.1:28365949-28365968 None:intergenic 35.0%
!! TATTGGCAAGTATTGGTTCT+TGG + chr2.1:28366488-28366507 MS.gene039179:intron 35.0%
AATGCCCTAAGTTCATTGCT+TGG + chr2.1:28367089-28367108 MS.gene039179:CDS 40.0%
AATTACTGGGCAAGTCCATT+TGG + chr2.1:28365847-28365866 MS.gene039179:CDS 40.0%
AGAATAGCCCTAGCTGAAAA+GGG + chr2.1:28365880-28365899 MS.gene039179:CDS 40.0%
ATCATGCATGGTCACTGTAT+TGG + chr2.1:28366471-28366490 MS.gene039179:intron 40.0%
ATGCCCTAAGTTCATTGCTT+GGG + chr2.1:28367090-28367109 MS.gene039179:CDS 40.0%
ATTCTGACACTCATGCCAAA+TGG - chr2.1:28365865-28365884 None:intergenic 40.0%
CTCAATCTGCAGACATCTAT+TGG - chr2.1:28367116-28367135 None:intergenic 40.0%
CTCTAGACTGATCTTACCAA+AGG - chr2.1:28367065-28367084 None:intergenic 40.0%
TAAGGATCAGAAGGCAACAA+AGG - chr2.1:28366072-28366091 None:intergenic 40.0%
TGGTAAGATCAGTCTAGAGA+AGG + chr2.1:28367066-28367085 MS.gene039179:CDS 40.0%
TTCAAAGTCTCTTCCTGATC+AGG + chr2.1:28367141-28367160 MS.gene039179:CDS 40.0%
! CTTGATACCCTTTTCAGCTA+GGG - chr2.1:28365890-28365909 None:intergenic 40.0%
! GTCACTGTATTGGCAAGTAT+TGG + chr2.1:28366481-28366500 MS.gene039179:intron 40.0%
! TTCTTGCTCTTCTCCCTTTT+TGG - chr2.1:28366903-28366922 None:intergenic 40.0%
!!! AGGAGATAAGCTTGGTTTTG+TGG + chr2.1:28366994-28367013 MS.gene039179:CDS 40.0%
AAGGAACCTTTGGGCCAAAA+AGG + chr2.1:28366886-28366905 MS.gene039179:CDS 45.0%
AGGAACCTTTGGGCCAAAAA+GGG + chr2.1:28366887-28366906 MS.gene039179:CDS 45.0%
ATGGGACAAAGGGAGTAACA+AGG - chr2.1:28366528-28366547 None:intergenic 45.0%
CAGAATAGCCCTAGCTGAAA+AGG + chr2.1:28365879-28365898 MS.gene039179:CDS 45.0%
GTCTCTTCCTGATCAGGATA+AGG + chr2.1:28367147-28367166 MS.gene039179:CDS 45.0%
TCATGGACCTTATCCTGATC+AGG - chr2.1:28367157-28367176 None:intergenic 45.0%
TGACGTTGGAAGGAACCTTT+GGG + chr2.1:28366877-28366896 MS.gene039179:CDS 45.0%
TGGCCCAAGCAATGAACTTA+GGG - chr2.1:28367096-28367115 None:intergenic 45.0%
TTGACGTTGGAAGGAACCTT+TGG + chr2.1:28366876-28366895 MS.gene039179:CDS 45.0%
TTGGCCCAAGCAATGAACTT+AGG - chr2.1:28367097-28367116 None:intergenic 45.0%
! GCTTGATACCCTTTTCAGCT+AGG - chr2.1:28365891-28365910 None:intergenic 45.0%
!! TGGCAAGTATTGGTTCTTGG+TGG + chr2.1:28366491-28366510 MS.gene039179:intron 45.0%
!! CTTCTCCCTTTTTGGCCCAA+AGG - chr2.1:28366895-28366914 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 28365823 28367210 28365823 ID=MS.gene039179
chr2.1 mRNA 28365823 28367210 28365823 ID=MS.gene039179.t1;Parent=MS.gene039179
chr2.1 exon 28365823 28366137 28365823 ID=MS.gene039179.t1.exon1;Parent=MS.gene039179.t1
chr2.1 CDS 28365823 28366137 28365823 ID=cds.MS.gene039179.t1;Parent=MS.gene039179.t1
chr2.1 exon 28366872 28367210 28366872 ID=MS.gene039179.t1.exon2;Parent=MS.gene039179.t1
chr2.1 CDS 28366872 28367210 28366872 ID=cds.MS.gene039179.t1;Parent=MS.gene039179.t1
Gene Sequence

>MS.gene039179

ATGGCTGATGAAGTGATTCTGCTAAATTACTGGGCAAGTCCATTTGGCATGAGTGTCAGAATAGCCCTAGCTGAAAAGGGTATCAAGCATGAGCAAAAAGAAGAAGATTTAAGGAACAAGAGCCCTTTGTTACTTCAAATGAACCCTATTCACAAGAAAATCCCTGTTCTCATTCATAATGGTAAACCCATTTGTGAATCTTTATTTGCTGTTCAGTATATTGATGAAGTTTGGAATGAGAAATCTCCTTTGTTGCCTTCTGATCCTTATCAGAAATCACAAGCTTTATTTTGGGCTGATTATATTGATAAGAAGGTATATAAATTGGTCTACATAAGTTTTTTCTTATATTTATAAAATATTATGAATCCTCTCAAAAAAAAAATATTATGAATCAAGAGACGAGAATTTAGAAAAAAAAGCTTATATTTTATATAATAAACCTATAAACTTTATTTTATCTTTTTTATAAAATTAGCTTATATTGGAGACTTATATGATGAGTGTTTAAGCTATAATCACTTAACTAATTAGCTATTAAGCTATTTGTACAAATTAGGGCCTTAATATGAATGAAATGTGTATGTCAATAATTTGAAGATAATTGAAATTGGGGGTACTTTTGTTTTAAACAAACGAATATTTATCATCATGCATGGTCACTGTATTGGCAAGTATTGGTTCTTGGTGGCTGTTGTTTTTCCTTGTTACTCCCTTTGTCCCATTTAACTGATCATTTTGTTCATTTCACACATATTAAGAAAAAATGTACAAGTGAAAGAAAAAGAAAAATAGTTTTAAGTGTCTTGTCAAGTATTGGTGCATCCCTTCTTATCATAAATGCAAAGTAGAATATATTGAATTGTGAGTGATAAATTTGTATTAATTAGAATTATAGCTGGAAAAAAGTAATTATCATTGTATTAAAAAGTGAAATGAGTCAAAAAAATTGGAATTTTTTTTTTTTTTACAAATGACTCAGTTATTAAGGGAATGAGATAGTATTGCATTTATGATCTAAGTGTGTGTCAATTCTCAATGTCAAATAGATATTTGACGTTGGAAGGAACCTTTGGGCCAAAAAGGGAGAAGAGCAAGAAGCTGCCAACAAAGAATTCATAGATGTCCACAAATTGTTGGAGCAAGAATTGGGAGACAAAATTTATTATGGAGGAGATAAGCTTGGTTTTGTGGATGTAGCACTTATTCCATACTACACTTGGTTTAAAAGTTATGAAACCTTTGGTAAGATCAGTCTAGAGAAGGAATGCCCTAAGTTCATTGCTTGGGCCAATAGATGTCTGCAGATTGAGAGTGTTTCAAAGTCTCTTCCTGATCAGGATAAGGTCCATGACTTAATTGTAGAGCTGAGGAAGATGAGTTATTAA
Protein sequence

>MS.gene039179.t1

MADEVILLNYWASPFGMSVRIALAEKGIKHEQKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESLFAVQYIDEVWNEKSPLLPSDPYQKSQALFWADYIDKKIFDVGRNLWAKKGEEQEAANKEFIDVHKLLEQELGDKIYYGGDKLGFVDVALIPYYTWFKSYETFGKISLEKECPKFIAWANRCLQIESVSKSLPDQDKVHDLIVELRKMSY