Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063433.t1 | RHN74662.1 | 89.9 | 217 | 22 | 0 | 1 | 217 | 18 | 234 | 1.00E-110 | 409.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063433.t1 | Q03666 | 73.2 | 213 | 56 | 1 | 3 | 214 | 4 | 216 | 3.4e-91 | 335.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063433.t1 | A0A072VJU8 | 89.9 | 217 | 22 | 0 | 1 | 217 | 1 | 217 | 7.2e-111 | 409.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063433.t1 | MTR_2g070180 | 89.862 | 217 | 22 | 0 | 1 | 217 | 1 | 217 | 2.81e-145 | 404 |
MS.gene063433.t1 | MTR_2g070150 | 89.706 | 204 | 21 | 0 | 1 | 204 | 1 | 204 | 8.15e-139 | 387 |
MS.gene063433.t1 | MTR_2g070130 | 80.556 | 216 | 42 | 0 | 1 | 216 | 1 | 216 | 5.49e-134 | 375 |
MS.gene063433.t1 | MTR_2g070140 | 87.879 | 198 | 24 | 0 | 17 | 214 | 1 | 198 | 7.16e-132 | 369 |
MS.gene063433.t1 | MTR_2g070210 | 76.389 | 216 | 49 | 1 | 1 | 214 | 1 | 216 | 3.87e-124 | 350 |
MS.gene063433.t1 | MTR_2g070200 | 71.689 | 219 | 59 | 3 | 1 | 216 | 1 | 219 | 1.36e-114 | 326 |
MS.gene063433.t1 | MTR_2g070060 | 63.721 | 215 | 78 | 0 | 1 | 215 | 1 | 215 | 7.91e-108 | 309 |
MS.gene063433.t1 | MTR_2g070070 | 63.721 | 215 | 78 | 0 | 1 | 215 | 1 | 215 | 9.34e-105 | 301 |
MS.gene063433.t1 | MTR_3g467420 | 62.381 | 210 | 79 | 0 | 5 | 214 | 10 | 219 | 1.37e-99 | 288 |
MS.gene063433.t1 | MTR_8g056940 | 63.551 | 214 | 78 | 0 | 1 | 214 | 1 | 214 | 4.11e-99 | 287 |
MS.gene063433.t1 | MTR_2g070110 | 61.395 | 215 | 82 | 1 | 1 | 215 | 1 | 214 | 5.62e-98 | 284 |
MS.gene063433.t1 | MTR_3g467430 | 60.377 | 212 | 84 | 0 | 3 | 214 | 8 | 219 | 7.87e-96 | 279 |
MS.gene063433.t1 | MTR_2g070120 | 60.094 | 213 | 85 | 0 | 1 | 213 | 1 | 213 | 6.30e-92 | 269 |
MS.gene063433.t1 | MTR_4g124130 | 58.140 | 215 | 89 | 1 | 1 | 214 | 1 | 215 | 5.24e-90 | 264 |
MS.gene063433.t1 | MTR_5g076900 | 51.869 | 214 | 101 | 2 | 2 | 214 | 4 | 216 | 3.02e-79 | 236 |
MS.gene063433.t1 | MTR_0186s0030 | 67.376 | 141 | 46 | 0 | 1 | 141 | 1 | 141 | 8.02e-65 | 197 |
MS.gene063433.t1 | MTR_1g090060 | 42.233 | 206 | 114 | 3 | 4 | 205 | 3 | 207 | 1.74e-50 | 164 |
MS.gene063433.t1 | MTR_5g037380 | 43.662 | 213 | 111 | 5 | 2 | 205 | 3 | 215 | 4.78e-50 | 162 |
MS.gene063433.t1 | MTR_8g087425 | 41.748 | 206 | 117 | 2 | 2 | 205 | 3 | 207 | 5.57e-50 | 162 |
MS.gene063433.t1 | MTR_7g065740 | 43.415 | 205 | 110 | 4 | 3 | 203 | 6 | 208 | 1.41e-49 | 161 |
MS.gene063433.t1 | MTR_7g065750 | 43.902 | 205 | 109 | 5 | 3 | 203 | 6 | 208 | 2.66e-49 | 160 |
MS.gene063433.t1 | MTR_4g019780 | 43.269 | 208 | 109 | 7 | 3 | 205 | 7 | 210 | 3.38e-49 | 160 |
MS.gene063433.t1 | MTR_5g040430 | 36.493 | 211 | 127 | 2 | 2 | 205 | 5 | 215 | 5.46e-49 | 160 |
MS.gene063433.t1 | MTR_7g065720 | 41.463 | 205 | 114 | 4 | 3 | 203 | 6 | 208 | 7.64e-49 | 159 |
MS.gene063433.t1 | MTR_7g065660 | 41.667 | 204 | 114 | 4 | 3 | 203 | 6 | 207 | 2.74e-48 | 158 |
MS.gene063433.t1 | MTR_8g087410 | 42.157 | 204 | 115 | 2 | 4 | 205 | 6 | 208 | 4.32e-48 | 157 |
MS.gene063433.t1 | MTR_7g065630 | 41.463 | 205 | 111 | 5 | 3 | 204 | 24 | 222 | 1.14e-47 | 157 |
MS.gene063433.t1 | MTR_3g099757 | 41.463 | 205 | 117 | 2 | 3 | 205 | 4 | 207 | 1.21e-47 | 156 |
MS.gene063433.t1 | MTR_4g059730 | 41.148 | 209 | 118 | 3 | 1 | 205 | 1 | 208 | 1.45e-46 | 153 |
MS.gene063433.t1 | MTR_4g019790 | 41.872 | 203 | 113 | 5 | 4 | 203 | 7 | 207 | 1.79e-45 | 150 |
MS.gene063433.t1 | MTR_6g080440 | 40.526 | 190 | 110 | 2 | 18 | 205 | 17 | 205 | 1.03e-44 | 149 |
MS.gene063433.t1 | MTR_1g090070 | 38.164 | 207 | 120 | 5 | 4 | 204 | 9 | 213 | 1.60e-44 | 148 |
MS.gene063433.t1 | MTR_7g065265 | 41.262 | 206 | 116 | 5 | 3 | 205 | 6 | 209 | 1.76e-44 | 148 |
MS.gene063433.t1 | MTR_7g065710 | 39.512 | 205 | 119 | 5 | 1 | 204 | 1 | 201 | 4.39e-44 | 147 |
MS.gene063433.t1 | MTR_1g090150 | 39.352 | 216 | 121 | 6 | 3 | 214 | 2 | 211 | 5.73e-44 | 147 |
MS.gene063433.t1 | MTR_1g090100 | 41.206 | 199 | 112 | 3 | 11 | 205 | 9 | 206 | 1.67e-43 | 145 |
MS.gene063433.t1 | MTR_7g065270 | 40.196 | 204 | 117 | 5 | 3 | 203 | 6 | 207 | 1.84e-43 | 145 |
MS.gene063433.t1 | MTR_7g065290 | 40.777 | 206 | 117 | 5 | 3 | 205 | 6 | 209 | 3.05e-43 | 145 |
MS.gene063433.t1 | MTR_7g065590 | 38.725 | 204 | 120 | 4 | 3 | 203 | 6 | 207 | 4.17e-43 | 144 |
MS.gene063433.t1 | MTR_7g065700 | 41.063 | 207 | 117 | 5 | 1 | 206 | 4 | 206 | 2.30e-42 | 143 |
MS.gene063433.t1 | MTR_8g061950 | 35.023 | 217 | 126 | 4 | 4 | 208 | 5 | 218 | 8.37e-42 | 142 |
MS.gene063433.t1 | MTR_7g065680 | 47.531 | 162 | 80 | 4 | 3 | 161 | 6 | 165 | 3.98e-41 | 139 |
MS.gene063433.t1 | MTR_7g065230 | 40.394 | 203 | 113 | 5 | 3 | 203 | 6 | 202 | 4.88e-41 | 139 |
MS.gene063433.t1 | MTR_7g065600 | 37.745 | 204 | 122 | 4 | 3 | 203 | 6 | 207 | 8.62e-41 | 139 |
MS.gene063433.t1 | MTR_1g090090 | 39.535 | 215 | 122 | 5 | 4 | 211 | 3 | 216 | 1.94e-40 | 138 |
MS.gene063433.t1 | MTR_7g065640 | 47.826 | 138 | 70 | 2 | 3 | 139 | 6 | 142 | 2.14e-38 | 132 |
MS.gene063433.t1 | MTR_1g115195 | 38.393 | 224 | 126 | 6 | 1 | 217 | 1 | 219 | 2.91e-38 | 132 |
MS.gene063433.t1 | MTR_7g065260 | 39.303 | 201 | 117 | 5 | 3 | 200 | 13 | 211 | 5.04e-36 | 127 |
MS.gene063433.t1 | MTR_2g072120 | 59.459 | 74 | 29 | 1 | 47 | 119 | 1 | 74 | 5.35e-29 | 103 |
MS.gene063433.t1 | MTR_4g134370 | 30.286 | 175 | 95 | 5 | 4 | 159 | 15 | 181 | 8.02e-14 | 68.2 |
MS.gene063433.t1 | MTR_4g134380 | 31.579 | 171 | 98 | 5 | 4 | 159 | 15 | 181 | 1.34e-13 | 67.8 |
MS.gene063433.t1 | MTR_4g134380 | 31.515 | 165 | 94 | 5 | 4 | 153 | 15 | 175 | 2.40e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063433.t1 | AT1G78380 | 67.290 | 214 | 70 | 0 | 1 | 214 | 1 | 214 | 7.14e-110 | 314 |
MS.gene063433.t1 | AT1G17180 | 66.355 | 214 | 72 | 0 | 1 | 214 | 1 | 214 | 8.17e-110 | 314 |
MS.gene063433.t1 | AT1G78370 | 63.889 | 216 | 78 | 0 | 1 | 216 | 1 | 216 | 1.35e-104 | 301 |
MS.gene063433.t1 | AT1G78340 | 64.019 | 214 | 77 | 0 | 1 | 214 | 1 | 214 | 7.41e-104 | 299 |
MS.gene063433.t1 | AT1G17170 | 64.019 | 214 | 76 | 1 | 1 | 214 | 1 | 213 | 1.81e-102 | 295 |
MS.gene063433.t1 | AT1G78320 | 63.084 | 214 | 79 | 0 | 1 | 214 | 1 | 214 | 6.54e-102 | 294 |
MS.gene063433.t1 | AT1G78360 | 63.721 | 215 | 77 | 1 | 1 | 214 | 1 | 215 | 1.59e-101 | 293 |
MS.gene063433.t1 | AT1G17190 | 58.019 | 212 | 89 | 0 | 3 | 214 | 4 | 215 | 2.86e-93 | 272 |
MS.gene063433.t1 | AT1G53680 | 57.547 | 212 | 88 | 2 | 5 | 214 | 8 | 219 | 7.48e-92 | 269 |
MS.gene063433.t1 | AT3G43800 | 55.300 | 217 | 93 | 3 | 3 | 215 | 4 | 220 | 1.63e-83 | 248 |
MS.gene063433.t1 | AT1G78320 | 55.140 | 214 | 69 | 1 | 1 | 214 | 1 | 187 | 6.70e-81 | 240 |
MS.gene063433.t1 | AT2G29420 | 44.390 | 205 | 111 | 3 | 2 | 204 | 7 | 210 | 2.70e-58 | 184 |
MS.gene063433.t1 | AT2G29440 | 44.660 | 206 | 108 | 4 | 3 | 204 | 5 | 208 | 8.17e-52 | 167 |
MS.gene063433.t1 | AT2G29450 | 44.444 | 207 | 108 | 5 | 3 | 204 | 5 | 209 | 4.62e-51 | 165 |
MS.gene063433.t1 | AT3G09270 | 41.748 | 206 | 117 | 2 | 3 | 205 | 5 | 210 | 4.98e-51 | 165 |
MS.gene063433.t1 | AT2G29490 | 39.171 | 217 | 126 | 4 | 3 | 215 | 6 | 220 | 1.71e-49 | 161 |
MS.gene063433.t1 | AT2G29480 | 40.777 | 206 | 116 | 4 | 3 | 204 | 6 | 209 | 4.02e-48 | 157 |
MS.gene063433.t1 | AT1G10360 | 39.726 | 219 | 124 | 4 | 2 | 212 | 3 | 221 | 1.46e-47 | 156 |
MS.gene063433.t1 | AT2G29470 | 40.488 | 205 | 115 | 5 | 5 | 204 | 8 | 210 | 6.02e-47 | 154 |
MS.gene063433.t1 | AT1G59700 | 41.096 | 219 | 120 | 5 | 3 | 212 | 5 | 223 | 1.36e-46 | 154 |
MS.gene063433.t1 | AT2G29460 | 39.806 | 206 | 118 | 4 | 3 | 204 | 6 | 209 | 9.44e-46 | 151 |
MS.gene063433.t1 | AT1G10370 | 38.288 | 222 | 115 | 4 | 2 | 208 | 3 | 217 | 8.64e-45 | 149 |
MS.gene063433.t1 | AT1G27140 | 37.333 | 225 | 131 | 4 | 3 | 217 | 5 | 229 | 4.76e-44 | 147 |
MS.gene063433.t1 | AT1G74590 | 36.111 | 216 | 132 | 3 | 5 | 214 | 8 | 223 | 2.40e-43 | 145 |
MS.gene063433.t1 | AT1G59670 | 40.455 | 220 | 120 | 5 | 3 | 212 | 5 | 223 | 1.03e-42 | 144 |
MS.gene063433.t1 | AT1G27130 | 36.321 | 212 | 126 | 4 | 3 | 205 | 5 | 216 | 2.21e-41 | 140 |
MS.gene063433.t1 | AT5G62480 | 35.242 | 227 | 135 | 4 | 1 | 216 | 5 | 230 | 2.23e-41 | 140 |
MS.gene063433.t1 | AT1G69930 | 37.619 | 210 | 120 | 4 | 5 | 205 | 13 | 220 | 2.28e-41 | 140 |
MS.gene063433.t1 | AT1G69920 | 36.538 | 208 | 117 | 5 | 5 | 200 | 35 | 239 | 2.18e-38 | 133 |
MS.gene063433.t1 | AT5G62480 | 29.075 | 227 | 123 | 5 | 1 | 216 | 5 | 204 | 5.32e-25 | 97.8 |
MS.gene063433.t1 | AT5G62480 | 29.333 | 225 | 120 | 5 | 3 | 216 | 7 | 203 | 5.42e-25 | 97.8 |
Find 50 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGGAGACAAGACTTATTT+TGG | 0.161950 | 2.3:+25799343 | MS.gene063433:CDS |
GACATCTATGAATTCTTTCT+TGG | 0.270245 | 2.3:-25799299 | None:intergenic |
GCAACTAAAGATTCACAAAT+AGG | 0.277043 | 2.3:-25798879 | None:intergenic |
CAAATTGTTGGAGCAAGAAT+TGG | 0.293479 | 2.3:+25799324 | MS.gene063433:CDS |
AAGTGATTCTGCTTGATTCC+TGG | 0.317076 | 2.3:+25798703 | MS.gene063433:CDS |
TTCAGTATATTGATGAGGTT+TGG | 0.340172 | 2.3:+25798904 | MS.gene063433:CDS |
AAGGAACCTTTGGGCCAAAA+AGG | 0.360471 | 2.3:+25799258 | MS.gene063433:CDS |
GATTCCTGGGCAAGTCCATT+TGG | 0.366880 | 2.3:+25798717 | MS.gene063433:CDS |
CATAGATGTCCTCAAATTGT+TGG | 0.381980 | 2.3:+25799312 | MS.gene063433:CDS |
CAGAATAGCCCTAGCTGAAA+AGG | 0.384656 | 2.3:+25798749 | MS.gene063433:CDS |
ATGAAGGTGGAAGGAACCTT+TGG | 0.387307 | 2.3:+25799248 | MS.gene063433:CDS |
ATTCTTGCTCCAACAATTTG+AGG | 0.395572 | 2.3:-25799321 | None:intergenic |
TTACCGTTATGAATCAGAAC+AGG | 0.415381 | 2.3:-25798855 | None:intergenic |
TTTAAAAGTTATGAAACCTT+TGG | 0.418179 | 2.3:+25799418 | MS.gene063433:CDS |
CACTTATTCCATACTACACT+TGG | 0.423079 | 2.3:+25799395 | MS.gene063433:CDS |
AGAGATCACAAGCTAGGTTC+TGG | 0.428783 | 2.3:+25798964 | MS.gene063433:CDS |
TTGGCCCAAGCAATGAACTT+AGG | 0.437475 | 2.3:-25799466 | None:intergenic |
TTCAAAGTCTCTGCCTGATC+AGG | 0.447860 | 2.3:+25799513 | MS.gene063433:CDS |
CTCAATCTGCATACATCTCT+TGG | 0.460115 | 2.3:-25799485 | None:intergenic |
TCATGGACCTTATCCTGATC+AGG | 0.463927 | 2.3:-25799526 | None:intergenic |
TGGCCCAAGCAATGAACTTA+GGG | 0.464217 | 2.3:-25799465 | None:intergenic |
ATGCCCTAAGTTCATTGCTT+GGG | 0.465024 | 2.3:+25799462 | MS.gene063433:CDS |
CTAGCTTGTGATCTCTGATA+AGG | 0.467136 | 2.3:-25798957 | None:intergenic |
AATGCCCTAAGTTCATTGCT+TGG | 0.469149 | 2.3:+25799461 | MS.gene063433:CDS |
GTCTCTGCCTGATCAGGATA+AGG | 0.471928 | 2.3:+25799519 | MS.gene063433:CDS |
GGTTCATTTGTAACAACAAA+GGG | 0.474781 | 2.3:-25798815 | None:intergenic |
AAATTGTTGGAGCAAGAATT+GGG | 0.479522 | 2.3:+25799325 | MS.gene063433:CDS |
AGTGATTCTGCTTGATTCCT+GGG | 0.480041 | 2.3:+25798704 | MS.gene063433:CDS |
GAGATCACAAGCTAGGTTCT+GGG | 0.491244 | 2.3:+25798965 | MS.gene063433:CDS |
TGAAGGTGGAAGGAACCTTT+GGG | 0.498294 | 2.3:+25799249 | MS.gene063433:CDS |
GGCTGATTATGTTGATAAGA+AGG | 0.507102 | 2.3:+25798986 | MS.gene063433:CDS |
ATTCTGAGTCTCATGCCAAA+TGG | 0.515676 | 2.3:-25798732 | None:intergenic |
AATGTCAAATAGATCTATGA+AGG | 0.517536 | 2.3:+25799232 | MS.gene063433:intron |
ATTGTAGAGCTGAGGAAGAC+GGG | 0.518205 | 2.3:+25799553 | MS.gene063433:CDS |
AGAATAGCCCTAGCTGAAAA+GGG | 0.531819 | 2.3:+25798750 | MS.gene063433:CDS |
CATGCCAAATGGACTTGCCC+AGG | 0.533387 | 2.3:-25798721 | None:intergenic |
CTCTAGACTGATCTTACCAA+AGG | 0.536129 | 2.3:-25799434 | None:intergenic |
AATTGTAGAGCTGAGGAAGA+CGG | 0.540044 | 2.3:+25799552 | MS.gene063433:CDS |
CTTATCAGAGATCACAAGCT+AGG | 0.551577 | 2.3:+25798958 | MS.gene063433:CDS |
ATCCCTGTTCTGATTCATAA+CGG | 0.561977 | 2.3:+25798852 | MS.gene063433:CDS |
GTCAAATAGATCTATGAAGG+TGG | 0.573200 | 2.3:+25799235 | MS.gene063433:intron |
AATAGATCTATGAAGGTGGA+AGG | 0.587856 | 2.3:+25799239 | MS.gene063433:intron |
CAGAATCACTTCATCAGCCA+TGG | 0.592382 | 2.3:-25798691 | None:intergenic |
GATCTCTGATAAGGATCAGA+AGG | 0.596783 | 2.3:-25798948 | None:intergenic |
GGGTTCATTTGTAACAACAA+AGG | 0.598423 | 2.3:-25798816 | None:intergenic |
TGGTAAGATCAGTCTAGAGA+AGG | 0.602196 | 2.3:+25799438 | MS.gene063433:CDS |
TAAGGATCAGAAGGCAACAA+AGG | 0.613337 | 2.3:-25798939 | None:intergenic |
TCAGCTCTACAATTAAGTCA+TGG | 0.618125 | 2.3:-25799543 | None:intergenic |
TACCGTTATGAATCAGAACA+GGG | 0.629965 | 2.3:-25798854 | None:intergenic |
ATGACTTAATTGTAGAGCTG+AGG | 0.630926 | 2.3:+25799545 | MS.gene063433:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAAAAGTTATGAAACCTT+TGG | + | chr2.3:25799418-25799437 | MS.gene063433:CDS | 20.0% |
!!! | AGTTTTATATGAGACTTATA+TGG | + | chr2.3:25799149-25799168 | MS.gene063433:intron | 20.0% |
!!! | TGATAAGAAGGTATATAAAT+TGG | + | chr2.3:25798998-25799017 | MS.gene063433:intron | 20.0% |
! | AATGTCAAATAGATCTATGA+AGG | + | chr2.3:25799232-25799251 | MS.gene063433:intron | 25.0% |
AAATTGTTGGAGCAAGAATT+GGG | + | chr2.3:25799325-25799344 | MS.gene063433:CDS | 30.0% | |
GACATCTATGAATTCTTTCT+TGG | - | chr2.3:25799302-25799321 | None:intergenic | 30.0% | |
GCAACTAAAGATTCACAAAT+AGG | - | chr2.3:25798882-25798901 | None:intergenic | 30.0% | |
GGTTCATTTGTAACAACAAA+GGG | - | chr2.3:25798818-25798837 | None:intergenic | 30.0% | |
TTCAGTATATTGATGAGGTT+TGG | + | chr2.3:25798904-25798923 | MS.gene063433:CDS | 30.0% | |
! | CTTTTAAACCAAGTGTAGTA+TGG | - | chr2.3:25799406-25799425 | None:intergenic | 30.0% |
! | TGCTTTTCAGTATATTGATG+AGG | + | chr2.3:25798899-25798918 | MS.gene063433:CDS | 30.0% |
AATAGATCTATGAAGGTGGA+AGG | + | chr2.3:25799239-25799258 | MS.gene063433:intron | 35.0% | |
ATCCCTGTTCTGATTCATAA+CGG | + | chr2.3:25798852-25798871 | MS.gene063433:CDS | 35.0% | |
ATGACTTAATTGTAGAGCTG+AGG | + | chr2.3:25799545-25799564 | MS.gene063433:CDS | 35.0% | |
ATTCTTGCTCCAACAATTTG+AGG | - | chr2.3:25799324-25799343 | None:intergenic | 35.0% | |
CAAATTGTTGGAGCAAGAAT+TGG | + | chr2.3:25799324-25799343 | MS.gene063433:CDS | 35.0% | |
CACTTATTCCATACTACACT+TGG | + | chr2.3:25799395-25799414 | MS.gene063433:CDS | 35.0% | |
CATAGATGTCCTCAAATTGT+TGG | + | chr2.3:25799312-25799331 | MS.gene063433:CDS | 35.0% | |
GGGTTCATTTGTAACAACAA+AGG | - | chr2.3:25798819-25798838 | None:intergenic | 35.0% | |
GTCAAATAGATCTATGAAGG+TGG | + | chr2.3:25799235-25799254 | MS.gene063433:intron | 35.0% | |
TACCGTTATGAATCAGAACA+GGG | - | chr2.3:25798857-25798876 | None:intergenic | 35.0% | |
TCAGCTCTACAATTAAGTCA+TGG | - | chr2.3:25799546-25799565 | None:intergenic | 35.0% | |
TTACCGTTATGAATCAGAAC+AGG | - | chr2.3:25798858-25798877 | None:intergenic | 35.0% | |
! | GGCTGATTATGTTGATAAGA+AGG | + | chr2.3:25798986-25799005 | MS.gene063433:CDS | 35.0% |
! | TTGGGAGACAAGACTTATTT+TGG | + | chr2.3:25799343-25799362 | MS.gene063433:CDS | 35.0% |
!! | ACAAAGGGCTTTTGTTACTT+AGG | - | chr2.3:25798803-25798822 | None:intergenic | 35.0% |
!! | TATTTTGGAGGAGATAAGCT+TGG | + | chr2.3:25799358-25799377 | MS.gene063433:CDS | 35.0% |
AAGTGATTCTGCTTGATTCC+TGG | + | chr2.3:25798703-25798722 | MS.gene063433:CDS | 40.0% | |
AATGCCCTAAGTTCATTGCT+TGG | + | chr2.3:25799461-25799480 | MS.gene063433:CDS | 40.0% | |
AATTGTAGAGCTGAGGAAGA+CGG | + | chr2.3:25799552-25799571 | MS.gene063433:CDS | 40.0% | |
AGAATAGCCCTAGCTGAAAA+GGG | + | chr2.3:25798750-25798769 | MS.gene063433:CDS | 40.0% | |
AGTGATTCTGCTTGATTCCT+GGG | + | chr2.3:25798704-25798723 | MS.gene063433:CDS | 40.0% | |
ATGCCCTAAGTTCATTGCTT+GGG | + | chr2.3:25799462-25799481 | MS.gene063433:CDS | 40.0% | |
ATTCTGAGTCTCATGCCAAA+TGG | - | chr2.3:25798735-25798754 | None:intergenic | 40.0% | |
CTCAATCTGCATACATCTCT+TGG | - | chr2.3:25799488-25799507 | None:intergenic | 40.0% | |
CTCTAGACTGATCTTACCAA+AGG | - | chr2.3:25799437-25799456 | None:intergenic | 40.0% | |
CTTATCAGAGATCACAAGCT+AGG | + | chr2.3:25798958-25798977 | MS.gene063433:CDS | 40.0% | |
GATCTCTGATAAGGATCAGA+AGG | - | chr2.3:25798951-25798970 | None:intergenic | 40.0% | |
TAAGGATCAGAAGGCAACAA+AGG | - | chr2.3:25798942-25798961 | None:intergenic | 40.0% | |
TGGTAAGATCAGTCTAGAGA+AGG | + | chr2.3:25799438-25799457 | MS.gene063433:CDS | 40.0% | |
! | ACAGGGATTTTCTTGTGAAC+AGG | - | chr2.3:25798840-25798859 | None:intergenic | 40.0% |
! | CAGGGATTTTCTTGTGAACA+GGG | - | chr2.3:25798839-25798858 | None:intergenic | 40.0% |
! | CTAGCTTGTGATCTCTGATA+AGG | - | chr2.3:25798960-25798979 | None:intergenic | 40.0% |
! | CTTGATACCCTTTTCAGCTA+GGG | - | chr2.3:25798760-25798779 | None:intergenic | 40.0% |
! | TTCTTGCTCTTCTCCCTTTT+TGG | - | chr2.3:25799275-25799294 | None:intergenic | 40.0% |
!!! | AGGAGATAAGCTTGGTTTTG+TGG | + | chr2.3:25799366-25799385 | MS.gene063433:CDS | 40.0% |
!!! | GGAGACAAGACTTATTTTGG+AGG | + | chr2.3:25799346-25799365 | MS.gene063433:CDS | 40.0% |
AAGGAACCTTTGGGCCAAAA+AGG | + | chr2.3:25799258-25799277 | MS.gene063433:CDS | 45.0% | |
AGAGATCACAAGCTAGGTTC+TGG | + | chr2.3:25798964-25798983 | MS.gene063433:CDS | 45.0% | |
AGGAACCTTTGGGCCAAAAA+GGG | + | chr2.3:25799259-25799278 | MS.gene063433:CDS | 45.0% | |
ATGAAGGTGGAAGGAACCTT+TGG | + | chr2.3:25799248-25799267 | MS.gene063433:CDS | 45.0% | |
ATTGTAGAGCTGAGGAAGAC+GGG | + | chr2.3:25799553-25799572 | MS.gene063433:CDS | 45.0% | |
CAGAATAGCCCTAGCTGAAA+AGG | + | chr2.3:25798749-25798768 | MS.gene063433:CDS | 45.0% | |
GAGATCACAAGCTAGGTTCT+GGG | + | chr2.3:25798965-25798984 | MS.gene063433:CDS | 45.0% | |
TCATGGACCTTATCCTGATC+AGG | - | chr2.3:25799529-25799548 | None:intergenic | 45.0% | |
TGAAGGTGGAAGGAACCTTT+GGG | + | chr2.3:25799249-25799268 | MS.gene063433:CDS | 45.0% | |
TGGCCCAAGCAATGAACTTA+GGG | - | chr2.3:25799468-25799487 | None:intergenic | 45.0% | |
TTCAAAGTCTCTGCCTGATC+AGG | + | chr2.3:25799513-25799532 | MS.gene063433:CDS | 45.0% | |
TTGGCCCAAGCAATGAACTT+AGG | - | chr2.3:25799469-25799488 | None:intergenic | 45.0% | |
! | GCTTGATACCCTTTTCAGCT+AGG | - | chr2.3:25798761-25798780 | None:intergenic | 45.0% |
GATTCCTGGGCAAGTCCATT+TGG | + | chr2.3:25798717-25798736 | MS.gene063433:CDS | 50.0% | |
GTCTCTGCCTGATCAGGATA+AGG | + | chr2.3:25799519-25799538 | MS.gene063433:CDS | 50.0% | |
!! | CTTCTCCCTTTTTGGCCCAA+AGG | - | chr2.3:25799267-25799286 | None:intergenic | 50.0% |
! | CATGCCAAATGGACTTGCCC+AGG | - | chr2.3:25798724-25798743 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 25798693 | 25799582 | 25798693 | ID=MS.gene063433 |
chr2.3 | mRNA | 25798693 | 25799582 | 25798693 | ID=MS.gene063433.t1;Parent=MS.gene063433 |
chr2.3 | exon | 25798693 | 25799007 | 25798693 | ID=MS.gene063433.t1.exon1;Parent=MS.gene063433.t1 |
chr2.3 | CDS | 25798693 | 25799007 | 25798693 | ID=cds.MS.gene063433.t1;Parent=MS.gene063433.t1 |
chr2.3 | exon | 25799244 | 25799582 | 25799244 | ID=MS.gene063433.t1.exon2;Parent=MS.gene063433.t1 |
chr2.3 | CDS | 25799244 | 25799582 | 25799244 | ID=cds.MS.gene063433.t1;Parent=MS.gene063433.t1 |
Gene Sequence |
Protein sequence |