AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039180.t1 MTR_2g070200 96.330 218 7 1 1 217 1 218 2.33e-155 429
MS.gene039180.t1 MTR_2g070150 73.171 205 54 1 1 205 1 204 1.57e-115 328
MS.gene039180.t1 MTR_2g070210 68.950 219 65 2 1 217 1 218 1.74e-111 318
MS.gene039180.t1 MTR_2g070180 67.907 215 68 1 1 215 1 214 2.01e-111 318
MS.gene039180.t1 MTR_2g070140 71.144 201 57 1 17 217 1 200 3.19e-108 309
MS.gene039180.t1 MTR_2g070130 64.815 216 75 1 1 216 1 215 8.38e-107 306
MS.gene039180.t1 MTR_2g070060 58.525 217 89 1 1 217 1 216 2.53e-94 275
MS.gene039180.t1 MTR_2g070070 59.908 217 86 1 1 217 1 216 2.02e-93 273
MS.gene039180.t1 MTR_3g467420 62.927 205 75 1 5 209 10 213 4.04e-93 272
MS.gene039180.t1 MTR_8g056940 58.716 218 89 1 1 218 1 217 1.65e-90 265
MS.gene039180.t1 MTR_3g467430 61.836 207 78 1 3 209 8 213 8.18e-90 263
MS.gene039180.t1 MTR_2g070120 58.716 218 88 2 1 218 1 216 4.15e-87 256
MS.gene039180.t1 MTR_4g124130 56.881 218 92 2 1 217 1 217 1.65e-86 255
MS.gene039180.t1 MTR_2g070110 56.221 217 93 1 1 217 1 215 4.03e-86 254
MS.gene039180.t1 MTR_5g076900 48.095 210 106 3 2 210 4 211 2.43e-66 204
MS.gene039180.t1 MTR_0186s0030 60.563 142 55 1 1 142 1 141 1.13e-56 176
MS.gene039180.t1 MTR_1g090060 42.661 218 119 4 4 217 3 218 1.25e-52 169
MS.gene039180.t1 MTR_4g059730 42.081 221 120 5 1 216 1 218 3.11e-51 165
MS.gene039180.t1 MTR_1g090070 40.183 219 124 5 4 217 9 225 6.96e-50 162
MS.gene039180.t1 MTR_8g087425 39.269 219 129 3 2 218 3 219 5.31e-49 160
MS.gene039180.t1 MTR_7g065720 40.952 210 119 4 3 209 6 213 3.16e-48 158
MS.gene039180.t1 MTR_5g040430 37.264 212 125 3 2 206 5 215 5.93e-48 157
MS.gene039180.t1 MTR_5g037380 40.278 216 121 3 2 209 3 218 6.46e-48 157
MS.gene039180.t1 MTR_1g090100 42.584 209 114 4 5 209 3 209 2.57e-46 153
MS.gene039180.t1 MTR_7g065740 40.758 211 118 5 3 209 6 213 3.13e-46 153
MS.gene039180.t1 MTR_7g065660 40.476 210 121 3 3 210 6 213 4.69e-46 152
MS.gene039180.t1 MTR_3g099757 42.308 208 116 4 3 208 4 209 9.15e-46 151
MS.gene039180.t1 MTR_4g019780 39.171 217 126 4 3 216 7 220 1.66e-44 148
MS.gene039180.t1 MTR_1g090090 41.743 218 121 5 4 217 3 218 2.48e-44 148
MS.gene039180.t1 MTR_8g087410 41.000 200 114 3 4 201 6 203 3.11e-44 147
MS.gene039180.t1 MTR_7g065600 40.796 201 115 3 3 201 6 204 2.77e-43 145
MS.gene039180.t1 MTR_7g065590 39.713 209 122 3 3 209 6 212 2.86e-43 145
MS.gene039180.t1 MTR_7g065750 40.594 202 115 4 3 201 6 205 3.06e-43 145
MS.gene039180.t1 MTR_4g019790 38.942 208 123 3 4 209 7 212 9.34e-43 144
MS.gene039180.t1 MTR_6g080440 41.624 197 109 4 18 211 17 210 9.95e-43 144
MS.gene039180.t1 MTR_1g115195 41.232 211 116 6 1 206 1 208 1.90e-42 143
MS.gene039180.t1 MTR_7g065265 41.627 209 118 4 3 209 6 212 8.57e-42 141
MS.gene039180.t1 MTR_7g065270 41.148 209 119 4 3 209 6 212 1.57e-41 140
MS.gene039180.t1 MTR_7g065230 40.991 222 112 5 3 217 6 215 3.61e-41 139
MS.gene039180.t1 MTR_1g090150 38.073 218 126 6 3 215 2 215 6.51e-41 139
MS.gene039180.t1 MTR_7g065710 38.647 207 123 4 1 207 1 203 6.83e-41 139
MS.gene039180.t1 MTR_7g065290 41.148 209 119 4 3 209 6 212 1.95e-40 138
MS.gene039180.t1 MTR_8g061950 38.498 213 121 4 3 206 4 215 3.59e-40 137
MS.gene039180.t1 MTR_7g065630 38.942 208 121 6 3 209 24 226 9.34e-40 136
MS.gene039180.t1 MTR_7g065640 38.462 208 108 5 3 209 6 194 4.18e-38 131
MS.gene039180.t1 MTR_7g065260 41.294 201 114 3 3 201 13 211 2.54e-36 127
MS.gene039180.t1 MTR_7g065700 37.799 209 126 4 1 209 4 208 3.13e-36 127
MS.gene039180.t1 MTR_7g065680 38.278 209 121 5 3 209 6 208 9.43e-36 125
MS.gene039180.t1 MTR_2g072120 60.274 73 29 0 47 119 1 73 1.64e-29 105
MS.gene039180.t1 MTR_4g134380 30.588 170 102 4 4 160 15 181 2.99e-13 66.6
MS.gene039180.t1 MTR_4g134370 29.240 171 105 5 3 160 14 181 5.76e-12 63.2
MS.gene039180.t1 MTR_4g134380 29.878 164 99 4 4 154 15 175 1.60e-11 61.2
MS.gene039180.t1 MTR_1g067180 29.897 194 116 9 14 199 37 218 3.08e-11 61.2
MS.gene039180.t1 MTR_1g067180 29.442 197 119 9 11 199 31 215 3.82e-11 60.8
MS.gene039180.t1 MTR_4g043640 54.762 42 19 0 149 190 44 85 4.49e-11 57.8
MS.gene039180.t1 MTR_7g100320 29.064 203 130 9 11 208 33 226 5.46e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039180.t1 AT1G78380 63.134 217 79 1 1 217 1 216 2.09e-100 290
MS.gene039180.t1 AT1G17180 61.290 217 83 1 1 217 1 216 7.59e-99 286
MS.gene039180.t1 AT1G78340 61.722 209 79 1 1 209 1 208 6.27e-96 279
MS.gene039180.t1 AT1G78370 60.000 215 85 1 1 215 1 214 5.15e-94 274
MS.gene039180.t1 AT1G17170 60.829 217 83 2 1 217 1 215 1.47e-93 273
MS.gene039180.t1 AT1G78360 61.187 219 82 3 1 218 1 217 4.71e-93 271
MS.gene039180.t1 AT1G78320 58.605 215 88 1 1 215 1 214 2.97e-91 267
MS.gene039180.t1 AT1G53680 57.488 207 87 1 3 208 6 212 8.49e-87 256
MS.gene039180.t1 AT1G17190 53.488 215 99 1 3 217 4 217 2.23e-82 244
MS.gene039180.t1 AT3G43800 51.152 217 101 4 3 215 4 219 5.15e-77 231
MS.gene039180.t1 AT1G78320 50.233 215 79 2 1 215 1 187 1.28e-69 211
MS.gene039180.t1 AT2G29420 43.836 219 119 4 2 218 7 223 1.33e-55 177
MS.gene039180.t1 AT3G09270 42.512 207 115 3 3 206 5 210 4.36e-50 162
MS.gene039180.t1 AT1G10360 42.326 215 117 3 2 209 3 217 6.24e-50 162
MS.gene039180.t1 AT1G59700 41.743 218 119 4 3 212 5 222 8.67e-47 154
MS.gene039180.t1 AT2G29490 39.336 211 119 6 3 208 6 212 3.81e-46 152
MS.gene039180.t1 AT1G10370 40.930 215 120 3 2 209 3 217 5.73e-46 152
MS.gene039180.t1 AT2G29480 39.336 211 119 6 3 208 6 212 1.45e-44 149
MS.gene039180.t1 AT1G27130 38.140 215 125 3 3 209 5 219 4.98e-44 147
MS.gene039180.t1 AT2G29440 38.182 220 127 6 3 217 5 220 7.47e-44 147
MS.gene039180.t1 AT1G74590 37.500 200 118 3 3 196 6 204 2.16e-43 145
MS.gene039180.t1 AT2G29450 38.208 212 125 4 3 210 5 214 1.63e-42 143
MS.gene039180.t1 AT2G29460 37.273 220 129 6 3 217 6 221 1.78e-42 143
MS.gene039180.t1 AT1G59670 39.908 218 123 4 3 212 5 222 2.95e-42 143
MS.gene039180.t1 AT1G27140 37.327 217 127 3 3 210 5 221 6.28e-42 142
MS.gene039180.t1 AT1G69930 38.389 211 124 3 5 209 13 223 7.11e-42 142
MS.gene039180.t1 AT5G62480 37.387 222 124 5 1 210 5 223 1.61e-41 141
MS.gene039180.t1 AT2G29470 36.530 219 129 7 5 217 8 222 8.79e-41 139
MS.gene039180.t1 AT1G69920 34.389 221 134 4 5 217 35 252 1.16e-35 126
MS.gene039180.t1 AT5G62480 30.180 222 114 6 1 210 5 197 1.12e-23 94.4
MS.gene039180.t1 AT5G62480 30.455 220 111 6 3 210 7 196 1.30e-23 94.4

Find 57 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTTAATGCAATTTCTTT+AGG 0.154698 2.1:-28355429 None:intergenic
CTGGGAGACAAGGCTTATTT+TGG 0.162898 2.1:+28355208 MS.gene039180:CDS
TGAGAGCACAAGCTAGATTT+TGG 0.184304 2.1:+28354406 MS.gene039180:CDS
TACTTAATGCAATTTCTTTA+GGG 0.241317 2.1:-28355428 None:intergenic
CATATCTATGAATTCCTTCT+TGG 0.269924 2.1:-28355164 None:intergenic
TTTGAAACATATGAGAAGTT+TGG 0.284132 2.1:+28355283 MS.gene039180:CDS
ATTACAAGTGACTCACAAAT+AGG 0.297067 2.1:-28354321 None:intergenic
GGTTTCTGGATAAGTCCTTA+TGG 0.328976 2.1:+28354159 MS.gene039180:CDS
AGTTCATTGAATGGGCTAAT+AGG 0.359818 2.1:+28355335 MS.gene039180:CDS
CATAGATATGCTCAAATTGT+TGG 0.364566 2.1:+28355177 MS.gene039180:CDS
AAGCTGGAAGGAAAGTTTAT+AGG 0.375912 2.1:+28355113 MS.gene039180:CDS
AAGAATAGCCCTTGCTGAAA+AGG 0.396907 2.1:+28354191 MS.gene039180:CDS
TTGCCATTGTGGATTAGAAC+CGG 0.405758 2.1:-28354297 None:intergenic
CACAAATAGGTTTGCCATTG+TGG 0.406278 2.1:-28354308 None:intergenic
ATAGAGATGCAAGGGAGAAT+TGG 0.406692 2.1:+28354235 MS.gene039180:CDS
ATTAGCCCATTCAATGAACT+TGG 0.407359 2.1:-28355332 None:intergenic
TCGTAGACCTTATGCTGGTT+AGG 0.419263 2.1:-28355391 None:intergenic
TTGAGTATATTGATGAGGTT+TGG 0.428745 2.1:+28354346 MS.gene039180:CDS
AAAATCTAGCTTGTGCTCTC+AGG 0.436530 2.1:-28354404 None:intergenic
TGGAGGAGACAGACTTGGTT+TGG 0.440850 2.1:+28355228 MS.gene039180:CDS
GGCACTCAATCTCTATATTG+AGG 0.449276 2.1:-28355309 None:intergenic
GTTTCAAACCAACTGTAGAA+TGG 0.455904 2.1:-28355268 None:intergenic
TTTCAAACCAACTGTAGAAT+GGG 0.460044 2.1:-28355267 None:intergenic
ATTCTTGCTCTCATTCCATA+AGG 0.463260 2.1:-28354174 None:intergenic
GGCTGACTATGTTGATAAAA+CGG 0.464640 2.1:+28354428 MS.gene039180:CDS
CAAATTGTTGGAGAAACAGC+TGG 0.465628 2.1:+28355189 MS.gene039180:CDS
CCCTAGTCCCATTCTACAGT+TGG 0.473896 2.1:+28355260 MS.gene039180:CDS
GTGCCCCAAGTTCATTGAAT+GGG 0.489598 2.1:+28355327 MS.gene039180:CDS
GTCTCTTCCTAACCAGCATA+AGG 0.491160 2.1:+28355384 MS.gene039180:CDS
AGAATAGCCCTTGCTGAAAA+GGG 0.508196 2.1:+28354192 MS.gene039180:CDS
AGTGCCCCAAGTTCATTGAA+TGG 0.509213 2.1:+28355326 MS.gene039180:CDS
GGGTTCATTTGTAGAAGATA+AGG 0.510488 2.1:-28354258 None:intergenic
TTAGCCCATTCAATGAACTT+GGG 0.515536 2.1:-28355331 None:intergenic
AGAACAAGAAGCTGCCAAGA+AGG 0.534444 2.1:+28355150 MS.gene039180:CDS
TGTCAATAGATATATGAAGC+TGG 0.543339 2.1:+28355097 MS.gene039180:intron
GTATATTGATGAGGTTTGGA+AGG 0.548215 2.1:+28354350 MS.gene039180:CDS
GTTCATAGATAGAGATGCAA+GGG 0.548817 2.1:+28354227 MS.gene039180:CDS
TGCCATTGTGGATTAGAACC+GGG 0.551246 2.1:-28354296 None:intergenic
CTAGCTTGTGCTCTCAGGTA+GGG 0.551544 2.1:-28354399 None:intergenic
CTACCAAGTCATGGCTGATG+AGG 0.563594 2.1:+28354125 None:intergenic
CCAAGTCATGGCTGATGAGG+TGG 0.571685 2.1:+28354128 None:intergenic
TCTAGCTTGTGCTCTCAGGT+AGG 0.573698 2.1:-28354400 None:intergenic
TAGCCCATTCAATGAACTTG+GGG 0.580169 2.1:-28355330 None:intergenic
CCCGGTTCACAAGAAAATCC+CGG 0.589293 2.1:+28354278 MS.gene039180:CDS
GGAGAAACAGCTGGGAGACA+AGG 0.589733 2.1:+28355198 MS.gene039180:CDS
AATAGATATATGAAGCTGGA+AGG 0.589985 2.1:+28355101 MS.gene039180:intron
CCAACTGTAGAATGGGACTA+GGG 0.601552 2.1:-28355260 None:intergenic
ATGCTGGTTAGGAAGAGACT+TGG 0.605348 2.1:-28355380 None:intergenic
GCTCTCAGGTAGGGATCAGA+AGG 0.607625 2.1:-28354390 None:intergenic
AGTTCATAGATAGAGATGCA+AGG 0.614971 2.1:+28354226 MS.gene039180:CDS
ACCAACTGTAGAATGGGACT+AGG 0.615269 2.1:-28355261 None:intergenic
TGAACTCGTAGACCTTATGC+TGG 0.626524 2.1:-28355396 None:intergenic
AAATTGTTGGAGAAACAGCT+GGG 0.647590 2.1:+28355190 MS.gene039180:CDS
TTATCTTCTACAAATGAACC+CGG 0.663975 2.1:+28354260 MS.gene039180:CDS
TAGGGATCAGAAGGCAACAA+CGG 0.667696 2.1:-28354381 None:intergenic
AATTGTTGAGTATATTGATG+AGG 0.670411 2.1:+28354341 MS.gene039180:CDS
ATCCCGGTTCTAATCCACAA+TGG 0.688019 2.1:+28354294 MS.gene039180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAATAAATATTGGA+TGG - chr2.1:28354694-28354713 None:intergenic 10.0%
!!! TATCAATTTTGATATTTAAT+CGG + chr2.1:28354582-28354601 MS.gene039180:intron 10.0%
!! GGATTAAAAATTTATTGAAT+GGG + chr2.1:28354869-28354888 MS.gene039180:intron 15.0%
!! TGGATTAAAAATTTATTGAA+TGG + chr2.1:28354868-28354887 MS.gene039180:intron 15.0%
!!! TTTCTTTAATTTTTTTAGAG+AGG + chr2.1:28354713-28354732 MS.gene039180:intron 15.0%
!! AATGTAATTTGATATTGAGT+AGG - chr2.1:28354906-28354925 None:intergenic 20.0%
!! TACTCAATATCAAATTACAT+TGG + chr2.1:28354905-28354924 MS.gene039180:intron 20.0%
!!! TTTAATTTTTTTAGAGAGGA+AGG + chr2.1:28354717-28354736 MS.gene039180:intron 20.0%
! AAAGTTTATAGGACCAAAAA+AGG + chr2.1:28355124-28355143 MS.gene039180:CDS 25.0%
! AATTAACACCCAAAATTAGT+TGG - chr2.1:28355072-28355091 None:intergenic 25.0%
! AATTGTTGAGTATATTGATG+AGG + chr2.1:28354341-28354360 MS.gene039180:CDS 25.0%
! TGTAGGCAAAAATAAGTTAT+TGG - chr2.1:28354827-28354846 None:intergenic 25.0%
! TTTATTGAATGGGTCTAATA+AGG + chr2.1:28354879-28354898 MS.gene039180:intron 25.0%
!! ATTTTTACAAAATTCGTCGT+TGG + chr2.1:28354848-28354867 MS.gene039180:intron 25.0%
!! CGAATTTTGTAAAAATGTGT+AGG - chr2.1:28354844-28354863 None:intergenic 25.0%
!! TTTGAAACATATGAGAAGTT+TGG + chr2.1:28355283-28355302 MS.gene039180:CDS 25.0%
!!! TGTTGTTTCCAACTAATTTT+GGG + chr2.1:28355061-28355080 MS.gene039180:intron 25.0%
AATAGATATATGAAGCTGGA+AGG + chr2.1:28355101-28355120 MS.gene039180:intron 30.0%
ATTACAAGTGACTCACAAAT+AGG - chr2.1:28354324-28354343 None:intergenic 30.0%
CATAGATATGCTCAAATTGT+TGG + chr2.1:28355177-28355196 MS.gene039180:CDS 30.0%
CATATCTATGAATTCCTTCT+TGG - chr2.1:28355167-28355186 None:intergenic 30.0%
CCATTTCACTAAAAGTAGTA+AGG + chr2.1:28354998-28355017 MS.gene039180:intron 30.0%
GATATTTAATCGGTTGAGTT+AGG + chr2.1:28354592-28354611 MS.gene039180:intron 30.0%
TGTCAATAGATATATGAAGC+TGG + chr2.1:28355097-28355116 MS.gene039180:intron 30.0%
TTATCTTCTACAAATGAACC+CGG + chr2.1:28354260-28354279 MS.gene039180:CDS 30.0%
TTGAGTATATTGATGAGGTT+TGG + chr2.1:28354346-28354365 MS.gene039180:CDS 30.0%
TTTCAAACCAACTGTAGAAT+GGG - chr2.1:28355270-28355289 None:intergenic 30.0%
! CTTTCATCGATCTCTATTTT+AGG + chr2.1:28354656-28354675 MS.gene039180:intron 30.0%
!! CCTTACTACTTTTAGTGAAA+TGG - chr2.1:28355001-28355020 None:intergenic 30.0%
!!! GTGTTGTTTCCAACTAATTT+TGG + chr2.1:28355060-28355079 MS.gene039180:intron 30.0%
!!! TCGATCTCTATTTTAGGTTT+TGG + chr2.1:28354662-28354681 MS.gene039180:intron 30.0%
!!! TTCTTGTTCTTCTCCTTTTT+TGG - chr2.1:28355140-28355159 None:intergenic 30.0%
AAATTGTTGGAGAAACAGCT+GGG + chr2.1:28355190-28355209 MS.gene039180:CDS 35.0%
AAGCTGGAAGGAAAGTTTAT+AGG + chr2.1:28355113-28355132 MS.gene039180:CDS 35.0%
AGTTCATAGATAGAGATGCA+AGG + chr2.1:28354226-28354245 MS.gene039180:CDS 35.0%
ATTAGCCCATTCAATGAACT+TGG - chr2.1:28355335-28355354 None:intergenic 35.0%
ATTCTTGCTCTCATTCCATA+AGG - chr2.1:28354177-28354196 None:intergenic 35.0%
GAGAAGACATCAAATTACGT+TGG + chr2.1:28354778-28354797 MS.gene039180:intron 35.0%
GGGTTCATTTGTAGAAGATA+AGG - chr2.1:28354261-28354280 None:intergenic 35.0%
GTATATTGATGAGGTTTGGA+AGG + chr2.1:28354350-28354369 MS.gene039180:CDS 35.0%
GTTCATAGATAGAGATGCAA+GGG + chr2.1:28354227-28354246 MS.gene039180:CDS 35.0%
GTTTCAAACCAACTGTAGAA+TGG - chr2.1:28355271-28355290 None:intergenic 35.0%
TTAGCCCATTCAATGAACTT+GGG - chr2.1:28355334-28355353 None:intergenic 35.0%
TTGAAACTCACATACACAAG+TGG + chr2.1:28354532-28354551 MS.gene039180:intron 35.0%
! GGCTGACTATGTTGATAAAA+CGG + chr2.1:28354428-28354447 MS.gene039180:CDS 35.0%
!! AGTTCATTGAATGGGCTAAT+AGG + chr2.1:28355335-28355354 MS.gene039180:CDS 35.0%
!!! CTCTATTTTAGGTTTTGGTG+TGG + chr2.1:28354667-28354686 MS.gene039180:intron 35.0%
AACTCACATACACAAGTGGA+AGG + chr2.1:28354536-28354555 MS.gene039180:intron 40.0%
AAGAATAGCCCTTGCTGAAA+AGG + chr2.1:28354191-28354210 MS.gene039180:CDS 40.0%
AGAATAGCCCTTGCTGAAAA+GGG + chr2.1:28354192-28354211 MS.gene039180:CDS 40.0%
ATAGAGATGCAAGGGAGAAT+TGG + chr2.1:28354235-28354254 MS.gene039180:CDS 40.0%
CAAATTGTTGGAGAAACAGC+TGG + chr2.1:28355189-28355208 MS.gene039180:CDS 40.0%
CACAAATAGGTTTGCCATTG+TGG - chr2.1:28354311-28354330 None:intergenic 40.0%
GGCACTCAATCTCTATATTG+AGG - chr2.1:28355312-28355331 None:intergenic 40.0%
TAGCCCATTCAATGAACTTG+GGG - chr2.1:28355333-28355352 None:intergenic 40.0%
! AAAATCTAGCTTGTGCTCTC+AGG - chr2.1:28354407-28354426 None:intergenic 40.0%
! GGTTTCTGGATAAGTCCTTA+TGG + chr2.1:28354159-28354178 MS.gene039180:CDS 40.0%
!! GAGAGCACAAGCTAGATTTT+GGG + chr2.1:28354407-28354426 MS.gene039180:CDS 40.0%
!! TATTTTGGAGGAGACAGACT+TGG + chr2.1:28355223-28355242 MS.gene039180:CDS 40.0%
!! TGAGAGCACAAGCTAGATTT+TGG + chr2.1:28354406-28354425 MS.gene039180:CDS 40.0%
!! TTGCCATTGTGGATTAGAAC+CGG - chr2.1:28354300-28354319 None:intergenic 40.0%
!!! AGGTGGTTTTGTTAGGTTTC+TGG + chr2.1:28354145-28354164 MS.gene039180:CDS 40.0%
ACATACACAAGTGGAAGGAC+GGG + chr2.1:28354541-28354560 MS.gene039180:intron 45.0%
ACCAACTGTAGAATGGGACT+AGG - chr2.1:28355264-28355283 None:intergenic 45.0%
AGAACAAGAAGCTGCCAAGA+AGG + chr2.1:28355150-28355169 MS.gene039180:CDS 45.0%
AGTGCCCCAAGTTCATTGAA+TGG + chr2.1:28355326-28355345 MS.gene039180:CDS 45.0%
CACATACACAAGTGGAAGGA+CGG + chr2.1:28354540-28354559 MS.gene039180:intron 45.0%
CCAACTGTAGAATGGGACTA+GGG - chr2.1:28355263-28355282 None:intergenic 45.0%
GTCTCTTCCTAACCAGCATA+AGG + chr2.1:28355384-28355403 MS.gene039180:CDS 45.0%
GTGCCCCAAGTTCATTGAAT+GGG + chr2.1:28355327-28355346 MS.gene039180:CDS 45.0%
TAGGGATCAGAAGGCAACAA+CGG - chr2.1:28354384-28354403 None:intergenic 45.0%
TGAACTCGTAGACCTTATGC+TGG - chr2.1:28355399-28355418 None:intergenic 45.0%
! ACCGGGATTTTCTTGTGAAC+CGG - chr2.1:28354282-28354301 None:intergenic 45.0%
! ACTTGACACCCTTTTCAGCA+AGG - chr2.1:28354203-28354222 None:intergenic 45.0%
! ATCCCGGTTCTAATCCACAA+TGG + chr2.1:28354294-28354313 MS.gene039180:CDS 45.0%
! ATGCTGGTTAGGAAGAGACT+TGG - chr2.1:28355383-28355402 None:intergenic 45.0%
! CTGGGAGACAAGGCTTATTT+TGG + chr2.1:28355208-28355227 MS.gene039180:CDS 45.0%
! CTTGACACCCTTTTCAGCAA+GGG - chr2.1:28354202-28354221 None:intergenic 45.0%
! TCGTAGACCTTATGCTGGTT+AGG - chr2.1:28355394-28355413 None:intergenic 45.0%
!! TGCCATTGTGGATTAGAACC+GGG - chr2.1:28354299-28354318 None:intergenic 45.0%
!!! GCTGATGAGGTGGTTTTGTT+AGG + chr2.1:28354138-28354157 MS.gene039180:CDS 45.0%
!!! GGAGACAAGGCTTATTTTGG+AGG + chr2.1:28355211-28355230 MS.gene039180:CDS 45.0%
!! AGAAAAAAAATAATAAATAT+TGG - chr2.1:28354698-28354717 None:intergenic 5.0%
CCCGGTTCACAAGAAAATCC+CGG + chr2.1:28354278-28354297 MS.gene039180:CDS 50.0%
CCCTAGTCCCATTCTACAGT+TGG + chr2.1:28355260-28355279 MS.gene039180:CDS 50.0%
! CCGGGATTTTCTTGTGAACC+GGG - chr2.1:28354281-28354300 None:intergenic 50.0%
! CTAGCTTGTGCTCTCAGGTA+GGG - chr2.1:28354402-28354421 None:intergenic 50.0%
! TCTAGCTTGTGCTCTCAGGT+AGG - chr2.1:28354403-28354422 None:intergenic 50.0%
! TGGAGGAGACAGACTTGGTT+TGG + chr2.1:28355228-28355247 MS.gene039180:CDS 50.0%
GCTCTCAGGTAGGGATCAGA+AGG - chr2.1:28354393-28354412 None:intergenic 55.0%
GGAGAAACAGCTGGGAGACA+AGG + chr2.1:28355198-28355217 MS.gene039180:CDS 55.0%
TACACAAGTGGAAGGACGGG+TGG + chr2.1:28354544-28354563 MS.gene039180:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 28354135 28355447 28354135 ID=MS.gene039180
chr2.1 mRNA 28354135 28355447 28354135 ID=MS.gene039180.t1;Parent=MS.gene039180
chr2.1 exon 28354135 28354449 28354135 ID=MS.gene039180.t1.exon1;Parent=MS.gene039180.t1
chr2.1 CDS 28354135 28354449 28354135 ID=cds.MS.gene039180.t1;Parent=MS.gene039180.t1
chr2.1 exon 28355106 28355447 28355106 ID=MS.gene039180.t1.exon2;Parent=MS.gene039180.t1
chr2.1 CDS 28355106 28355447 28355106 ID=cds.MS.gene039180.t1;Parent=MS.gene039180.t1
Gene Sequence

>MS.gene039180

ATGGCTGATGAGGTGGTTTTGTTAGGTTTCTGGATAAGTCCTTATGGAATGAGAGCAAGAATAGCCCTTGCTGAAAAGGGTGTCAAGTATGAGTTCATAGATAGAGATGCAAGGGAGAATTGGCCTTATCTTCTACAAATGAACCCGGTTCACAAGAAAATCCCGGTTCTAATCCACAATGGCAAACCTATTTGTGAGTCACTTGTAATTGTTGAGTATATTGATGAGGTTTGGAAGGATAGATCTCCGTTGTTGCCTTCTGATCCCTACCTGAGAGCACAAGCTAGATTTTGGGCTGACTATGTTGATAAAACGGTATATAATCATAAGAGTCTTCAATTTTTTTTTTTTTGACTCGTATATTTTTTTTGTACATAGACGAAATGACATATAACTATTGAAACTCACATACACAAGTGGAAGGACGGGTGGTCATAGCATCTGACTTATCAATTTTGATATTTAATCGGTTGAGTTAGGACATGTGAACTGACACGTATATTCAATCTTGCTAAATTATGCTTTCATCGATCTCTATTTTAGGTTTTGGTGTGGTCCATCCAATATTTATTATTTTTTTTCTTTAATTTTTTTAGAGAGGAAGGAAATTAATTTATTACTATTTTTAATTAAAATAGTTTATGAGAAGACATCAAATTACGTTGGTATAAACTTAATAGTTACACTGTCCAATAACTTATTTTTGCCTACACATTTTTACAAAATTCGTCGTTGGATTAAAAATTTATTGAATGGGTCTAATAAGGACCTACTCAATATCAAATTACATTGGTGTGAACATTTTTGTAAGTTCTGATGCAAAAGTTTGTATATCATCAGTATTTTTTGTATTATCAAATCTACCATTTCACTAAAAGTAGTAAGGTCGATCTTTGACTCTTGTGTACGTTTCTCATTTTCTTGCGTGTTGTTTCCAACTAATTTTGGGTGTTAATTATCAATGTCAATAGATATATGAAGCTGGAAGGAAAGTTTATAGGACCAAAAAAGGAGAAGAACAAGAAGCTGCCAAGAAGGAATTCATAGATATGCTCAAATTGTTGGAGAAACAGCTGGGAGACAAGGCTTATTTTGGAGGAGACAGACTTGGTTTGGTAGATATAGCCCTAGTCCCATTCTACAGTTGGTTTGAAACATATGAGAAGTTTGGAAACCTCAATATAGAGATTGAGTGCCCCAAGTTCATTGAATGGGCTAATAGGTGCATGCAGATTGAGAGTGTTTCCAAGTCTCTTCCTAACCAGCATAAGGTCTACGAGTTCATTGCAGATGCCCTAAAGAAATTGCATTAA
Protein sequence

>MS.gene039180.t1

MADEVVLLGFWISPYGMRARIALAEKGVKYEFIDRDARENWPYLLQMNPVHKKIPVLIHNGKPICESLVIVEYIDEVWKDRSPLLPSDPYLRAQARFWADYVDKTIYEAGRKVYRTKKGEEQEAAKKEFIDMLKLLEKQLGDKAYFGGDRLGLVDIALVPFYSWFETYEKFGNLNIEIECPKFIEWANRCMQIESVSKSLPNQHKVYEFIADALKKLH