Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062847.t1 | XP_013464347.2 | 89.3 | 214 | 23 | 0 | 1 | 214 | 1 | 214 | 9.10E-112 | 412.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062847.t1 | P49332 | 73.2 | 213 | 56 | 1 | 3 | 214 | 4 | 216 | 2.4e-92 | 339.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062847.t1 | I3TAJ1 | 89.3 | 214 | 23 | 0 | 1 | 214 | 1 | 214 | 1.5e-111 | 411.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062847.t1 | MTR_2g070180 | 88.479 | 217 | 25 | 0 | 1 | 217 | 1 | 217 | 1.76e-144 | 402 |
MS.gene062847.t1 | MTR_2g070150 | 90.686 | 204 | 19 | 0 | 1 | 204 | 1 | 204 | 5.86e-141 | 392 |
MS.gene062847.t1 | MTR_2g070140 | 88.889 | 198 | 22 | 0 | 17 | 214 | 1 | 198 | 2.00e-134 | 375 |
MS.gene062847.t1 | MTR_2g070130 | 78.704 | 216 | 46 | 0 | 1 | 216 | 1 | 216 | 3.31e-132 | 370 |
MS.gene062847.t1 | MTR_2g070210 | 77.778 | 216 | 46 | 1 | 1 | 214 | 1 | 216 | 3.63e-127 | 358 |
MS.gene062847.t1 | MTR_2g070200 | 72.603 | 219 | 57 | 3 | 1 | 216 | 1 | 219 | 3.63e-117 | 333 |
MS.gene062847.t1 | MTR_2g070060 | 64.651 | 215 | 76 | 0 | 1 | 215 | 1 | 215 | 2.60e-110 | 315 |
MS.gene062847.t1 | MTR_2g070070 | 64.186 | 215 | 77 | 0 | 1 | 215 | 1 | 215 | 1.44e-106 | 306 |
MS.gene062847.t1 | MTR_8g056940 | 64.486 | 214 | 76 | 0 | 1 | 214 | 1 | 214 | 2.59e-101 | 292 |
MS.gene062847.t1 | MTR_2g070110 | 62.791 | 215 | 79 | 1 | 1 | 215 | 1 | 214 | 5.94e-101 | 291 |
MS.gene062847.t1 | MTR_3g467420 | 61.429 | 210 | 81 | 0 | 5 | 214 | 10 | 219 | 2.70e-99 | 288 |
MS.gene062847.t1 | MTR_3g467430 | 59.434 | 212 | 86 | 0 | 3 | 214 | 8 | 219 | 1.64e-95 | 278 |
MS.gene062847.t1 | MTR_2g070120 | 59.155 | 213 | 87 | 0 | 1 | 213 | 1 | 213 | 1.48e-91 | 268 |
MS.gene062847.t1 | MTR_4g124130 | 58.140 | 215 | 89 | 1 | 1 | 214 | 1 | 215 | 1.28e-90 | 265 |
MS.gene062847.t1 | MTR_5g076900 | 52.336 | 214 | 100 | 2 | 2 | 214 | 4 | 216 | 2.92e-80 | 239 |
MS.gene062847.t1 | MTR_0186s0030 | 68.085 | 141 | 45 | 0 | 1 | 141 | 1 | 141 | 1.94e-65 | 199 |
MS.gene062847.t1 | MTR_8g087425 | 40.278 | 216 | 126 | 2 | 2 | 215 | 3 | 217 | 8.73e-51 | 164 |
MS.gene062847.t1 | MTR_1g090060 | 42.857 | 210 | 115 | 4 | 4 | 209 | 3 | 211 | 1.48e-50 | 164 |
MS.gene062847.t1 | MTR_7g065720 | 40.952 | 210 | 118 | 4 | 3 | 208 | 6 | 213 | 2.49e-50 | 163 |
MS.gene062847.t1 | MTR_5g037380 | 41.364 | 220 | 120 | 5 | 2 | 212 | 3 | 222 | 4.83e-50 | 162 |
MS.gene062847.t1 | MTR_3g099757 | 42.308 | 208 | 117 | 2 | 3 | 208 | 4 | 210 | 7.25e-50 | 162 |
MS.gene062847.t1 | MTR_7g065750 | 43.902 | 205 | 109 | 5 | 3 | 203 | 6 | 208 | 7.66e-50 | 162 |
MS.gene062847.t1 | MTR_7g065740 | 43.415 | 205 | 110 | 4 | 3 | 203 | 6 | 208 | 8.09e-50 | 162 |
MS.gene062847.t1 | MTR_4g019780 | 40.191 | 209 | 122 | 2 | 3 | 209 | 7 | 214 | 6.40e-49 | 159 |
MS.gene062847.t1 | MTR_5g040430 | 36.493 | 211 | 127 | 2 | 2 | 205 | 5 | 215 | 1.63e-48 | 159 |
MS.gene062847.t1 | MTR_8g087410 | 41.546 | 207 | 118 | 2 | 4 | 208 | 6 | 211 | 1.96e-48 | 158 |
MS.gene062847.t1 | MTR_7g065660 | 40.476 | 210 | 120 | 4 | 3 | 209 | 6 | 213 | 2.14e-48 | 158 |
MS.gene062847.t1 | MTR_7g065630 | 40.952 | 210 | 115 | 5 | 3 | 209 | 24 | 227 | 4.42e-48 | 158 |
MS.gene062847.t1 | MTR_4g059730 | 41.905 | 210 | 115 | 4 | 1 | 205 | 1 | 208 | 3.62e-47 | 155 |
MS.gene062847.t1 | MTR_1g090070 | 38.605 | 215 | 124 | 5 | 4 | 212 | 9 | 221 | 7.03e-46 | 152 |
MS.gene062847.t1 | MTR_4g019790 | 40.887 | 203 | 115 | 4 | 4 | 203 | 7 | 207 | 1.41e-45 | 151 |
MS.gene062847.t1 | MTR_6g080440 | 41.237 | 194 | 109 | 3 | 18 | 208 | 17 | 208 | 1.64e-45 | 150 |
MS.gene062847.t1 | MTR_7g065710 | 39.524 | 210 | 122 | 5 | 1 | 209 | 1 | 206 | 5.21e-45 | 149 |
MS.gene062847.t1 | MTR_1g090150 | 37.327 | 217 | 130 | 4 | 3 | 215 | 2 | 216 | 6.75e-45 | 149 |
MS.gene062847.t1 | MTR_7g065265 | 40.777 | 206 | 117 | 5 | 3 | 205 | 6 | 209 | 5.25e-44 | 147 |
MS.gene062847.t1 | MTR_1g090100 | 41.709 | 199 | 111 | 3 | 11 | 205 | 9 | 206 | 5.43e-44 | 147 |
MS.gene062847.t1 | MTR_7g065590 | 38.235 | 204 | 121 | 4 | 3 | 203 | 6 | 207 | 6.51e-44 | 147 |
MS.gene062847.t1 | MTR_7g065600 | 38.571 | 210 | 124 | 4 | 3 | 209 | 6 | 213 | 9.50e-44 | 146 |
MS.gene062847.t1 | MTR_7g065700 | 40.476 | 210 | 120 | 5 | 1 | 209 | 4 | 209 | 7.10e-43 | 144 |
MS.gene062847.t1 | MTR_7g065270 | 39.706 | 204 | 118 | 5 | 3 | 203 | 6 | 207 | 7.48e-43 | 144 |
MS.gene062847.t1 | MTR_7g065290 | 40.291 | 206 | 118 | 5 | 3 | 205 | 6 | 209 | 7.89e-43 | 144 |
MS.gene062847.t1 | MTR_7g065680 | 40.000 | 210 | 117 | 5 | 3 | 209 | 6 | 209 | 2.26e-42 | 142 |
MS.gene062847.t1 | MTR_8g061950 | 34.579 | 214 | 125 | 4 | 4 | 205 | 5 | 215 | 2.49e-41 | 140 |
MS.gene062847.t1 | MTR_7g065230 | 39.901 | 203 | 114 | 5 | 3 | 203 | 6 | 202 | 2.33e-40 | 137 |
MS.gene062847.t1 | MTR_1g090090 | 40.777 | 206 | 117 | 4 | 4 | 205 | 3 | 207 | 3.56e-40 | 137 |
MS.gene062847.t1 | MTR_7g065640 | 47.826 | 138 | 70 | 2 | 3 | 139 | 6 | 142 | 1.79e-38 | 132 |
MS.gene062847.t1 | MTR_1g115195 | 38.208 | 212 | 120 | 5 | 1 | 205 | 1 | 208 | 2.56e-38 | 132 |
MS.gene062847.t1 | MTR_7g065260 | 38.308 | 201 | 119 | 4 | 3 | 200 | 13 | 211 | 2.05e-36 | 127 |
MS.gene062847.t1 | MTR_2g072120 | 60.811 | 74 | 28 | 1 | 47 | 119 | 1 | 74 | 1.14e-29 | 105 |
MS.gene062847.t1 | MTR_4g134380 | 31.579 | 171 | 98 | 5 | 4 | 159 | 15 | 181 | 4.86e-14 | 68.9 |
MS.gene062847.t1 | MTR_4g134380 | 31.515 | 165 | 94 | 5 | 4 | 153 | 15 | 175 | 1.07e-12 | 64.3 |
MS.gene062847.t1 | MTR_4g043640 | 52.381 | 42 | 20 | 0 | 148 | 189 | 44 | 85 | 2.24e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene062847.t1 | AT1G78380 | 67.757 | 214 | 69 | 0 | 1 | 214 | 1 | 214 | 2.42e-111 | 318 |
MS.gene062847.t1 | AT1G17180 | 65.888 | 214 | 73 | 0 | 1 | 214 | 1 | 214 | 1.73e-110 | 316 |
MS.gene062847.t1 | AT1G78370 | 64.352 | 216 | 77 | 0 | 1 | 216 | 1 | 216 | 2.18e-106 | 305 |
MS.gene062847.t1 | AT1G78340 | 63.084 | 214 | 79 | 0 | 1 | 214 | 1 | 214 | 5.88e-104 | 299 |
MS.gene062847.t1 | AT1G78360 | 64.186 | 215 | 76 | 1 | 1 | 214 | 1 | 215 | 1.02e-103 | 298 |
MS.gene062847.t1 | AT1G17170 | 63.551 | 214 | 77 | 1 | 1 | 214 | 1 | 213 | 2.03e-103 | 298 |
MS.gene062847.t1 | AT1G78320 | 63.084 | 214 | 79 | 0 | 1 | 214 | 1 | 214 | 4.38e-103 | 297 |
MS.gene062847.t1 | AT1G17190 | 57.075 | 212 | 91 | 0 | 3 | 214 | 4 | 215 | 1.27e-93 | 273 |
MS.gene062847.t1 | AT1G53680 | 57.547 | 212 | 88 | 2 | 5 | 214 | 8 | 219 | 1.51e-92 | 270 |
MS.gene062847.t1 | AT3G43800 | 54.378 | 217 | 95 | 3 | 3 | 215 | 4 | 220 | 6.59e-83 | 246 |
MS.gene062847.t1 | AT1G78320 | 54.673 | 214 | 70 | 1 | 1 | 214 | 1 | 187 | 2.71e-81 | 241 |
MS.gene062847.t1 | AT2G29420 | 42.857 | 210 | 117 | 2 | 2 | 209 | 7 | 215 | 4.36e-58 | 183 |
MS.gene062847.t1 | AT3G09270 | 42.233 | 206 | 116 | 2 | 3 | 205 | 5 | 210 | 3.61e-52 | 168 |
MS.gene062847.t1 | AT2G29440 | 44.660 | 206 | 108 | 4 | 3 | 204 | 5 | 208 | 1.29e-51 | 166 |
MS.gene062847.t1 | AT2G29450 | 44.444 | 207 | 108 | 5 | 3 | 204 | 5 | 209 | 9.44e-51 | 164 |
MS.gene062847.t1 | AT2G29490 | 39.171 | 217 | 126 | 4 | 3 | 215 | 6 | 220 | 6.72e-50 | 162 |
MS.gene062847.t1 | AT1G10360 | 39.726 | 219 | 124 | 4 | 2 | 212 | 3 | 221 | 3.06e-49 | 160 |
MS.gene062847.t1 | AT2G29480 | 40.777 | 206 | 116 | 4 | 3 | 204 | 6 | 209 | 3.77e-48 | 157 |
MS.gene062847.t1 | AT1G59700 | 41.096 | 219 | 120 | 5 | 3 | 212 | 5 | 223 | 2.15e-47 | 156 |
MS.gene062847.t1 | AT2G29470 | 38.967 | 213 | 123 | 5 | 5 | 212 | 8 | 218 | 3.18e-47 | 155 |
MS.gene062847.t1 | AT2G29460 | 39.806 | 206 | 118 | 4 | 3 | 204 | 6 | 209 | 4.19e-46 | 152 |
MS.gene062847.t1 | AT1G10370 | 37.387 | 222 | 117 | 4 | 2 | 208 | 3 | 217 | 2.03e-45 | 150 |
MS.gene062847.t1 | AT1G59670 | 40.000 | 220 | 121 | 5 | 3 | 212 | 5 | 223 | 5.69e-44 | 147 |
MS.gene062847.t1 | AT1G74590 | 34.389 | 221 | 131 | 3 | 4 | 214 | 7 | 223 | 1.98e-43 | 145 |
MS.gene062847.t1 | AT1G27140 | 36.444 | 225 | 133 | 4 | 3 | 217 | 5 | 229 | 5.75e-43 | 145 |
MS.gene062847.t1 | AT1G69930 | 38.095 | 210 | 119 | 4 | 5 | 205 | 13 | 220 | 1.66e-42 | 143 |
MS.gene062847.t1 | AT1G27130 | 36.321 | 212 | 126 | 4 | 3 | 205 | 5 | 216 | 2.73e-42 | 142 |
MS.gene062847.t1 | AT5G62480 | 40.678 | 177 | 95 | 2 | 1 | 168 | 5 | 180 | 3.50e-41 | 140 |
MS.gene062847.t1 | AT1G69920 | 36.538 | 208 | 117 | 5 | 5 | 200 | 35 | 239 | 5.13e-39 | 135 |
MS.gene062847.t1 | AT5G62480 | 33.143 | 175 | 81 | 3 | 3 | 168 | 7 | 154 | 8.12e-25 | 97.4 |
MS.gene062847.t1 | AT5G62480 | 33.143 | 175 | 80 | 3 | 3 | 168 | 7 | 153 | 9.70e-25 | 97.1 |
Find 53 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGGAGACCGGACTTATTT+TGG | 0.184590 | 2.4:+25165201 | MS.gene062847:CDS |
GACATCTATGAATTCTTTCT+TGG | 0.270245 | 2.4:-25165157 | None:intergenic |
GCAACTAAAGATTCACAAAT+AGG | 0.275943 | 2.4:-25164740 | None:intergenic |
CAAATTGTTGGAGCAAGAAT+TGG | 0.293479 | 2.4:+25165182 | MS.gene062847:CDS |
AAGTGATTCTGCTTGATTCC+TGG | 0.317076 | 2.4:+25164564 | MS.gene062847:CDS |
TTCAGTATATTGATGAGGTT+TGG | 0.327749 | 2.4:+25164765 | MS.gene062847:CDS |
TTTAAAAGCTATGAGACCTT+TGG | 0.358405 | 2.4:+25165276 | MS.gene062847:CDS |
AAGGAACCTTTGGGCCAAAA+AGG | 0.360471 | 2.4:+25165116 | MS.gene062847:CDS |
GATTCCTGGGCAAGTCCATT+TGG | 0.366880 | 2.4:+25164578 | MS.gene062847:CDS |
CATAGATGTCCTCAAATTGT+TGG | 0.381980 | 2.4:+25165170 | MS.gene062847:CDS |
CAGAATAGCCCTAGCTGAAA+AGG | 0.384656 | 2.4:+25164610 | MS.gene062847:CDS |
ATGAAGGTGGAAGGAACCTT+TGG | 0.390594 | 2.4:+25165106 | MS.gene062847:CDS |
CACTTATTCCATTCTACACT+TGG | 0.395366 | 2.4:+25165253 | MS.gene062847:CDS |
ATTCTTGCTCCAACAATTTG+AGG | 0.395572 | 2.4:-25165179 | None:intergenic |
TCATGGACCTTATCCTGATC+AGG | 0.413575 | 2.4:-25165384 | None:intergenic |
TTACCGTTATGAATCAGAAC+AGG | 0.415381 | 2.4:-25164716 | None:intergenic |
CTCAATCTGCATACATCTCT+TGG | 0.415648 | 2.4:-25165343 | None:intergenic |
AGAGATCACAAGCTAGGTTC+TGG | 0.428783 | 2.4:+25164825 | MS.gene062847:CDS |
TTGGACCAAGCAATGAACTT+AGG | 0.437629 | 2.4:-25165324 | None:intergenic |
TTCAAAGTCACTCCCTGATC+AGG | 0.452471 | 2.4:+25165371 | MS.gene062847:CDS |
CTAGCTTGTGATCTCTGATA+AGG | 0.467136 | 2.4:-25164818 | None:intergenic |
GGTTCATTTGTAACAACAAA+GGG | 0.474781 | 2.4:-25164676 | None:intergenic |
TGGACCAAGCAATGAACTTA+GGG | 0.476815 | 2.4:-25165323 | None:intergenic |
AAATTGTTGGAGCAAGAATT+GGG | 0.479522 | 2.4:+25165183 | MS.gene062847:CDS |
AGTGATTCTGCTTGATTCCT+GGG | 0.480041 | 2.4:+25164565 | MS.gene062847:CDS |
CTCTAAATTGATGTTTCCAA+AGG | 0.489801 | 2.4:-25165292 | None:intergenic |
GAGATCACAAGCTAGGTTCT+GGG | 0.491244 | 2.4:+25164826 | MS.gene062847:CDS |
AATGCCCTAAGTTCATTGCT+TGG | 0.495645 | 2.4:+25165319 | MS.gene062847:CDS |
GTCACTCCCTGATCAGGATA+AGG | 0.500395 | 2.4:+25165377 | MS.gene062847:CDS |
GGCTGATTATGTTGATAAGA+AGG | 0.507102 | 2.4:+25164847 | MS.gene062847:CDS |
TGAAGGTGGAAGGAACCTTT+GGG | 0.507522 | 2.4:+25165107 | MS.gene062847:CDS |
ATTCTGAGTCTCATGCCAAA+TGG | 0.515676 | 2.4:-25164593 | None:intergenic |
TGGAAACATCAATTTAGAGA+AGG | 0.525535 | 2.4:+25165296 | MS.gene062847:CDS |
AATGTCAAATAGATATATGA+AGG | 0.531559 | 2.4:+25165090 | MS.gene062847:intron |
AGAATAGCCCTAGCTGAAAA+GGG | 0.531819 | 2.4:+25164611 | MS.gene062847:CDS |
ATTGTAGAGCTGAGGAAGAC+GGG | 0.532079 | 2.4:+25165411 | MS.gene062847:CDS |
CATGCCAAATGGACTTGCCC+AGG | 0.533387 | 2.4:-25164582 | None:intergenic |
TATCTCCTCCAAAATAAGTC+CGG | 0.546574 | 2.4:-25165209 | None:intergenic |
CTTATCAGAGATCACAAGCT+AGG | 0.551577 | 2.4:+25164819 | MS.gene062847:CDS |
TGGAGCAAGAATTGGGAGAC+CGG | 0.556673 | 2.4:+25165190 | MS.gene062847:CDS |
CATTGTAGAGCTGAGGAAGA+CGG | 0.561187 | 2.4:+25165410 | MS.gene062847:CDS |
ATCCCTGTTCTGATTCATAA+CGG | 0.561977 | 2.4:+25164713 | MS.gene062847:CDS |
TGCTGTTCAGTATATTGATG+AGG | 0.563629 | 2.4:+25164760 | MS.gene062847:CDS |
AATAGATATATGAAGGTGGA+AGG | 0.568115 | 2.4:+25165097 | MS.gene062847:intron |
CAGAATCACTTCATCAGCCA+TGG | 0.592382 | 2.4:-25164552 | None:intergenic |
GATCTCTGATAAGGATCAGA+AGG | 0.596783 | 2.4:-25164809 | None:intergenic |
GGGTTCATTTGTAACAACAA+AGG | 0.598423 | 2.4:-25164677 | None:intergenic |
TCAGCTCTACAATGTAGTCA+TGG | 0.600557 | 2.4:-25165401 | None:intergenic |
CATGGACCTTATCCTGATCA+GGG | 0.606504 | 2.4:-25165383 | None:intergenic |
GTCAAATAGATATATGAAGG+TGG | 0.608108 | 2.4:+25165093 | MS.gene062847:intron |
TAAGGATCAGAAGGCAACAA+AGG | 0.613337 | 2.4:-25164800 | None:intergenic |
TACCGTTATGAATCAGAACA+GGG | 0.629965 | 2.4:-25164715 | None:intergenic |
ATGACTACATTGTAGAGCTG+AGG | 0.637957 | 2.4:+25165403 | MS.gene062847:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGTCAAATAGATATATGA+AGG | + | chr2.4:25165090-25165109 | MS.gene062847:intron | 20.0% |
!!! | AGTTTTATATGAGACTTATA+TGG | + | chr2.4:25165010-25165029 | MS.gene062847:intron | 20.0% |
!!! | TGATAAGAAGGTATATAAAT+TGG | + | chr2.4:25164859-25164878 | MS.gene062847:intron | 20.0% |
AAATTGTTGGAGCAAGAATT+GGG | + | chr2.4:25165183-25165202 | MS.gene062847:CDS | 30.0% | |
AATAGATATATGAAGGTGGA+AGG | + | chr2.4:25165097-25165116 | MS.gene062847:intron | 30.0% | |
CTCTAAATTGATGTTTCCAA+AGG | - | chr2.4:25165295-25165314 | None:intergenic | 30.0% | |
GACATCTATGAATTCTTTCT+TGG | - | chr2.4:25165160-25165179 | None:intergenic | 30.0% | |
GCAACTAAAGATTCACAAAT+AGG | - | chr2.4:25164743-25164762 | None:intergenic | 30.0% | |
GGTTCATTTGTAACAACAAA+GGG | - | chr2.4:25164679-25164698 | None:intergenic | 30.0% | |
GTCAAATAGATATATGAAGG+TGG | + | chr2.4:25165093-25165112 | MS.gene062847:intron | 30.0% | |
TGGAAACATCAATTTAGAGA+AGG | + | chr2.4:25165296-25165315 | MS.gene062847:CDS | 30.0% | |
TTCAGTATATTGATGAGGTT+TGG | + | chr2.4:25164765-25164784 | MS.gene062847:CDS | 30.0% | |
TTTAAAAGCTATGAGACCTT+TGG | + | chr2.4:25165276-25165295 | MS.gene062847:CDS | 30.0% | |
! | CTTTTAAACCAAGTGTAGAA+TGG | - | chr2.4:25165264-25165283 | None:intergenic | 30.0% |
ATCCCTGTTCTGATTCATAA+CGG | + | chr2.4:25164713-25164732 | MS.gene062847:CDS | 35.0% | |
ATTCTTGCTCCAACAATTTG+AGG | - | chr2.4:25165182-25165201 | None:intergenic | 35.0% | |
CAAATTGTTGGAGCAAGAAT+TGG | + | chr2.4:25165182-25165201 | MS.gene062847:CDS | 35.0% | |
CACTTATTCCATTCTACACT+TGG | + | chr2.4:25165253-25165272 | MS.gene062847:CDS | 35.0% | |
CATAGATGTCCTCAAATTGT+TGG | + | chr2.4:25165170-25165189 | MS.gene062847:CDS | 35.0% | |
GGGTTCATTTGTAACAACAA+AGG | - | chr2.4:25164680-25164699 | None:intergenic | 35.0% | |
TACCGTTATGAATCAGAACA+GGG | - | chr2.4:25164718-25164737 | None:intergenic | 35.0% | |
TATCTCCTCCAAAATAAGTC+CGG | - | chr2.4:25165212-25165231 | None:intergenic | 35.0% | |
TGCTGTTCAGTATATTGATG+AGG | + | chr2.4:25164760-25164779 | MS.gene062847:CDS | 35.0% | |
TTACCGTTATGAATCAGAAC+AGG | - | chr2.4:25164719-25164738 | None:intergenic | 35.0% | |
! | GGCTGATTATGTTGATAAGA+AGG | + | chr2.4:25164847-25164866 | MS.gene062847:CDS | 35.0% |
!! | TATTTTGGAGGAGATAAGCT+TGG | + | chr2.4:25165216-25165235 | MS.gene062847:CDS | 35.0% |
AAGTGATTCTGCTTGATTCC+TGG | + | chr2.4:25164564-25164583 | MS.gene062847:CDS | 40.0% | |
AATGCCCTAAGTTCATTGCT+TGG | + | chr2.4:25165319-25165338 | MS.gene062847:CDS | 40.0% | |
AGAATAGCCCTAGCTGAAAA+GGG | + | chr2.4:25164611-25164630 | MS.gene062847:CDS | 40.0% | |
AGTGATTCTGCTTGATTCCT+GGG | + | chr2.4:25164565-25164584 | MS.gene062847:CDS | 40.0% | |
ATGACTACATTGTAGAGCTG+AGG | + | chr2.4:25165403-25165422 | MS.gene062847:CDS | 40.0% | |
ATTCTGAGTCTCATGCCAAA+TGG | - | chr2.4:25164596-25164615 | None:intergenic | 40.0% | |
CTCAATCTGCATACATCTCT+TGG | - | chr2.4:25165346-25165365 | None:intergenic | 40.0% | |
CTTATCAGAGATCACAAGCT+AGG | + | chr2.4:25164819-25164838 | MS.gene062847:CDS | 40.0% | |
GATCTCTGATAAGGATCAGA+AGG | - | chr2.4:25164812-25164831 | None:intergenic | 40.0% | |
TAAGGATCAGAAGGCAACAA+AGG | - | chr2.4:25164803-25164822 | None:intergenic | 40.0% | |
TCAGCTCTACAATGTAGTCA+TGG | - | chr2.4:25165404-25165423 | None:intergenic | 40.0% | |
TGGACCAAGCAATGAACTTA+GGG | - | chr2.4:25165326-25165345 | None:intergenic | 40.0% | |
TTGGACCAAGCAATGAACTT+AGG | - | chr2.4:25165327-25165346 | None:intergenic | 40.0% | |
! | ACAGGGATTTTCTTGTGAAC+AGG | - | chr2.4:25164701-25164720 | None:intergenic | 40.0% |
! | CAGGGATTTTCTTGTGAACA+GGG | - | chr2.4:25164700-25164719 | None:intergenic | 40.0% |
! | CTAGCTTGTGATCTCTGATA+AGG | - | chr2.4:25164821-25164840 | None:intergenic | 40.0% |
! | CTTGATACCCTTTTCAGCTA+GGG | - | chr2.4:25164621-25164640 | None:intergenic | 40.0% |
! | TTCTTGCTCTTCTCCCTTTT+TGG | - | chr2.4:25165133-25165152 | None:intergenic | 40.0% |
AAGGAACCTTTGGGCCAAAA+AGG | + | chr2.4:25165116-25165135 | MS.gene062847:CDS | 45.0% | |
AGAGATCACAAGCTAGGTTC+TGG | + | chr2.4:25164825-25164844 | MS.gene062847:CDS | 45.0% | |
AGGAACCTTTGGGCCAAAAA+GGG | + | chr2.4:25165117-25165136 | MS.gene062847:CDS | 45.0% | |
ATGAAGGTGGAAGGAACCTT+TGG | + | chr2.4:25165106-25165125 | MS.gene062847:CDS | 45.0% | |
ATTGTAGAGCTGAGGAAGAC+GGG | + | chr2.4:25165411-25165430 | MS.gene062847:CDS | 45.0% | |
CAGAATAGCCCTAGCTGAAA+AGG | + | chr2.4:25164610-25164629 | MS.gene062847:CDS | 45.0% | |
CATGGACCTTATCCTGATCA+GGG | - | chr2.4:25165386-25165405 | None:intergenic | 45.0% | |
CATTGTAGAGCTGAGGAAGA+CGG | + | chr2.4:25165410-25165429 | MS.gene062847:CDS | 45.0% | |
GAGATCACAAGCTAGGTTCT+GGG | + | chr2.4:25164826-25164845 | MS.gene062847:CDS | 45.0% | |
TCATGGACCTTATCCTGATC+AGG | - | chr2.4:25165387-25165406 | None:intergenic | 45.0% | |
TGAAGGTGGAAGGAACCTTT+GGG | + | chr2.4:25165107-25165126 | MS.gene062847:CDS | 45.0% | |
TTCAAAGTCACTCCCTGATC+AGG | + | chr2.4:25165371-25165390 | MS.gene062847:CDS | 45.0% | |
! | GCTTGATACCCTTTTCAGCT+AGG | - | chr2.4:25164622-25164641 | None:intergenic | 45.0% |
! | TTGGGAGACCGGACTTATTT+TGG | + | chr2.4:25165201-25165220 | MS.gene062847:CDS | 45.0% |
GATTCCTGGGCAAGTCCATT+TGG | + | chr2.4:25164578-25164597 | MS.gene062847:CDS | 50.0% | |
GTCACTCCCTGATCAGGATA+AGG | + | chr2.4:25165377-25165396 | MS.gene062847:CDS | 50.0% | |
TGGAGCAAGAATTGGGAGAC+CGG | + | chr2.4:25165190-25165209 | MS.gene062847:CDS | 50.0% | |
!! | CTTCTCCCTTTTTGGCCCAA+AGG | - | chr2.4:25165125-25165144 | None:intergenic | 50.0% |
!!! | GGAGACCGGACTTATTTTGG+AGG | + | chr2.4:25165204-25165223 | MS.gene062847:CDS | 50.0% |
! | CATGCCAAATGGACTTGCCC+AGG | - | chr2.4:25164585-25164604 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 25164554 | 25165440 | 25164554 | ID=MS.gene062847 |
chr2.4 | mRNA | 25164554 | 25165440 | 25164554 | ID=MS.gene062847.t1;Parent=MS.gene062847 |
chr2.4 | exon | 25164554 | 25164868 | 25164554 | ID=MS.gene062847.t1.exon1;Parent=MS.gene062847.t1 |
chr2.4 | CDS | 25164554 | 25164868 | 25164554 | ID=cds.MS.gene062847.t1;Parent=MS.gene062847.t1 |
chr2.4 | exon | 25165102 | 25165440 | 25165102 | ID=MS.gene062847.t1.exon2;Parent=MS.gene062847.t1 |
chr2.4 | CDS | 25165102 | 25165440 | 25165102 | ID=cds.MS.gene062847.t1;Parent=MS.gene062847.t1 |
Gene Sequence |
Protein sequence |