Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063430.t1 | AIP98335.1 | 94.9 | 217 | 11 | 0 | 4 | 220 | 3 | 219 | 5.60E-117 | 430.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063430.t1 | Q03666 | 69.7 | 221 | 66 | 1 | 1 | 220 | 1 | 221 | 8.5e-90 | 331.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063430.t1 | A0A089GJT0 | 94.9 | 217 | 11 | 0 | 4 | 220 | 3 | 219 | 4.0e-117 | 430.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063430.t1 | MTR_2g070130 | 92.627 | 217 | 16 | 0 | 4 | 220 | 3 | 219 | 3.18e-150 | 416 |
MS.gene063430.t1 | MTR_2g070150 | 86.634 | 202 | 27 | 0 | 4 | 205 | 3 | 204 | 8.55e-132 | 369 |
MS.gene063430.t1 | MTR_2g070180 | 82.075 | 212 | 38 | 0 | 4 | 215 | 3 | 214 | 1.11e-130 | 367 |
MS.gene063430.t1 | MTR_2g070140 | 82.759 | 203 | 35 | 0 | 18 | 220 | 1 | 203 | 5.88e-128 | 359 |
MS.gene063430.t1 | MTR_2g070210 | 70.776 | 219 | 62 | 1 | 4 | 220 | 3 | 221 | 7.54e-116 | 329 |
MS.gene063430.t1 | MTR_2g070200 | 68.037 | 219 | 68 | 2 | 4 | 220 | 3 | 221 | 6.44e-109 | 312 |
MS.gene063430.t1 | MTR_3g467420 | 62.100 | 219 | 83 | 0 | 2 | 220 | 6 | 224 | 2.51e-101 | 293 |
MS.gene063430.t1 | MTR_2g070060 | 60.369 | 217 | 86 | 0 | 4 | 220 | 3 | 219 | 1.05e-99 | 288 |
MS.gene063430.t1 | MTR_2g070070 | 60.829 | 217 | 85 | 0 | 4 | 220 | 3 | 219 | 2.19e-98 | 285 |
MS.gene063430.t1 | MTR_3g467430 | 60.000 | 220 | 88 | 0 | 1 | 220 | 5 | 224 | 1.63e-97 | 283 |
MS.gene063430.t1 | MTR_8g056940 | 59.813 | 214 | 86 | 0 | 4 | 217 | 3 | 216 | 8.15e-94 | 273 |
MS.gene063430.t1 | MTR_2g070120 | 60.766 | 209 | 82 | 0 | 4 | 212 | 3 | 211 | 7.35e-93 | 271 |
MS.gene063430.t1 | MTR_2g070110 | 59.908 | 217 | 86 | 1 | 4 | 220 | 3 | 218 | 1.32e-92 | 270 |
MS.gene063430.t1 | MTR_4g124130 | 57.534 | 219 | 92 | 1 | 3 | 220 | 2 | 220 | 1.19e-90 | 266 |
MS.gene063430.t1 | MTR_5g076900 | 49.083 | 218 | 109 | 2 | 4 | 220 | 5 | 221 | 1.14e-73 | 223 |
MS.gene063430.t1 | MTR_0186s0030 | 66.906 | 139 | 46 | 0 | 4 | 142 | 3 | 141 | 1.46e-63 | 194 |
MS.gene063430.t1 | MTR_8g087425 | 43.269 | 208 | 115 | 2 | 1 | 206 | 1 | 207 | 3.32e-52 | 168 |
MS.gene063430.t1 | MTR_1g090060 | 42.718 | 206 | 113 | 3 | 5 | 206 | 3 | 207 | 1.18e-51 | 167 |
MS.gene063430.t1 | MTR_7g065720 | 43.602 | 211 | 105 | 5 | 4 | 206 | 6 | 210 | 1.46e-51 | 166 |
MS.gene063430.t1 | MTR_4g019780 | 43.415 | 205 | 113 | 2 | 4 | 206 | 7 | 210 | 5.45e-51 | 165 |
MS.gene063430.t1 | MTR_3g099757 | 42.788 | 208 | 116 | 3 | 1 | 206 | 1 | 207 | 2.63e-50 | 163 |
MS.gene063430.t1 | MTR_5g037380 | 45.116 | 215 | 109 | 6 | 1 | 206 | 1 | 215 | 8.34e-50 | 162 |
MS.gene063430.t1 | MTR_7g065750 | 44.144 | 222 | 107 | 6 | 4 | 217 | 6 | 218 | 1.03e-49 | 162 |
MS.gene063430.t1 | MTR_8g087410 | 42.788 | 208 | 116 | 2 | 1 | 206 | 2 | 208 | 1.12e-49 | 162 |
MS.gene063430.t1 | MTR_7g065630 | 42.512 | 207 | 110 | 5 | 2 | 205 | 22 | 222 | 1.06e-48 | 159 |
MS.gene063430.t1 | MTR_7g065740 | 43.415 | 205 | 110 | 4 | 4 | 204 | 6 | 208 | 1.45e-48 | 159 |
MS.gene063430.t1 | MTR_4g019790 | 43.602 | 211 | 112 | 6 | 1 | 206 | 1 | 209 | 2.34e-48 | 158 |
MS.gene063430.t1 | MTR_5g040430 | 37.838 | 222 | 128 | 3 | 4 | 218 | 6 | 224 | 1.01e-47 | 157 |
MS.gene063430.t1 | MTR_4g059730 | 41.063 | 207 | 117 | 3 | 4 | 206 | 3 | 208 | 1.17e-47 | 156 |
MS.gene063430.t1 | MTR_7g065660 | 41.748 | 206 | 115 | 4 | 4 | 206 | 6 | 209 | 2.70e-47 | 155 |
MS.gene063430.t1 | MTR_7g065270 | 43.137 | 204 | 111 | 5 | 4 | 204 | 6 | 207 | 1.50e-46 | 154 |
MS.gene063430.t1 | MTR_7g065290 | 43.204 | 206 | 112 | 5 | 4 | 206 | 6 | 209 | 7.27e-46 | 152 |
MS.gene063430.t1 | MTR_7g065710 | 42.365 | 203 | 108 | 6 | 6 | 205 | 5 | 201 | 1.04e-45 | 151 |
MS.gene063430.t1 | MTR_1g090070 | 41.262 | 206 | 115 | 5 | 5 | 205 | 9 | 213 | 1.57e-45 | 151 |
MS.gene063430.t1 | MTR_6g080440 | 41.361 | 191 | 107 | 4 | 19 | 206 | 17 | 205 | 1.64e-45 | 151 |
MS.gene063430.t1 | MTR_7g065265 | 42.718 | 206 | 113 | 5 | 4 | 206 | 6 | 209 | 3.80e-45 | 150 |
MS.gene063430.t1 | MTR_1g115195 | 41.981 | 212 | 113 | 6 | 1 | 206 | 1 | 208 | 5.27e-45 | 149 |
MS.gene063430.t1 | MTR_1g090100 | 41.463 | 205 | 115 | 3 | 6 | 206 | 3 | 206 | 6.98e-45 | 149 |
MS.gene063430.t1 | MTR_1g090150 | 38.462 | 221 | 118 | 7 | 4 | 216 | 2 | 212 | 7.95e-45 | 149 |
MS.gene063430.t1 | MTR_7g065590 | 39.234 | 209 | 122 | 4 | 1 | 206 | 3 | 209 | 1.17e-44 | 149 |
MS.gene063430.t1 | MTR_7g065230 | 43.902 | 205 | 103 | 6 | 4 | 204 | 6 | 202 | 1.25e-44 | 149 |
MS.gene063430.t1 | MTR_1g090090 | 40.465 | 215 | 120 | 5 | 5 | 212 | 3 | 216 | 6.49e-44 | 147 |
MS.gene063430.t1 | MTR_7g065680 | 43.689 | 206 | 107 | 5 | 3 | 205 | 5 | 204 | 8.11e-44 | 146 |
MS.gene063430.t1 | MTR_8g061950 | 38.053 | 226 | 131 | 3 | 1 | 217 | 1 | 226 | 4.37e-43 | 145 |
MS.gene063430.t1 | MTR_7g065700 | 44.712 | 208 | 106 | 6 | 3 | 207 | 5 | 206 | 4.61e-43 | 145 |
MS.gene063430.t1 | MTR_7g065600 | 37.788 | 217 | 127 | 5 | 4 | 217 | 6 | 217 | 1.80e-41 | 140 |
MS.gene063430.t1 | MTR_7g065640 | 41.379 | 203 | 110 | 5 | 4 | 198 | 6 | 207 | 2.15e-41 | 140 |
MS.gene063430.t1 | MTR_7g065260 | 41.176 | 187 | 105 | 5 | 4 | 187 | 13 | 197 | 1.46e-36 | 128 |
MS.gene063430.t1 | MTR_2g072120 | 66.176 | 68 | 23 | 0 | 48 | 115 | 1 | 68 | 3.39e-29 | 104 |
MS.gene063430.t1 | MTR_1g067180 | 27.451 | 204 | 135 | 6 | 12 | 210 | 31 | 226 | 9.05e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene063430.t1 | AT1G17180 | 64.516 | 217 | 77 | 0 | 4 | 220 | 3 | 219 | 5.78e-105 | 302 |
MS.gene063430.t1 | AT1G78380 | 64.019 | 214 | 77 | 0 | 4 | 217 | 3 | 216 | 8.22e-103 | 296 |
MS.gene063430.t1 | AT1G78340 | 63.084 | 214 | 79 | 0 | 4 | 217 | 3 | 216 | 1.61e-100 | 290 |
MS.gene063430.t1 | AT1G78370 | 63.636 | 209 | 76 | 0 | 7 | 215 | 6 | 214 | 6.30e-100 | 289 |
MS.gene063430.t1 | AT1G78360 | 62.673 | 217 | 80 | 1 | 5 | 220 | 4 | 220 | 8.69e-100 | 289 |
MS.gene063430.t1 | AT1G78320 | 65.686 | 204 | 70 | 0 | 3 | 206 | 2 | 205 | 1.07e-99 | 288 |
MS.gene063430.t1 | AT1G17170 | 61.290 | 217 | 83 | 1 | 4 | 220 | 3 | 218 | 3.72e-97 | 282 |
MS.gene063430.t1 | AT1G17190 | 57.339 | 218 | 93 | 0 | 1 | 218 | 1 | 218 | 1.21e-95 | 278 |
MS.gene063430.t1 | AT1G53680 | 53.636 | 220 | 100 | 2 | 3 | 220 | 5 | 224 | 1.95e-86 | 255 |
MS.gene063430.t1 | AT3G43800 | 55.157 | 223 | 96 | 3 | 1 | 219 | 1 | 223 | 6.00e-83 | 246 |
MS.gene063430.t1 | AT1G78320 | 55.882 | 204 | 63 | 1 | 3 | 206 | 2 | 178 | 3.54e-77 | 231 |
MS.gene063430.t1 | AT2G29420 | 43.902 | 205 | 112 | 3 | 3 | 205 | 7 | 210 | 3.99e-57 | 181 |
MS.gene063430.t1 | AT3G09270 | 43.836 | 219 | 117 | 4 | 3 | 218 | 4 | 219 | 2.78e-55 | 176 |
MS.gene063430.t1 | AT2G29490 | 41.063 | 207 | 116 | 4 | 3 | 205 | 5 | 209 | 3.55e-52 | 168 |
MS.gene063430.t1 | AT2G29440 | 42.029 | 207 | 114 | 4 | 3 | 205 | 4 | 208 | 6.26e-52 | 167 |
MS.gene063430.t1 | AT2G29450 | 42.029 | 207 | 113 | 5 | 4 | 205 | 5 | 209 | 7.48e-51 | 164 |
MS.gene063430.t1 | AT2G29480 | 40.097 | 207 | 118 | 4 | 3 | 205 | 5 | 209 | 2.77e-50 | 163 |
MS.gene063430.t1 | AT2G29460 | 40.097 | 207 | 118 | 4 | 3 | 205 | 5 | 209 | 3.64e-50 | 163 |
MS.gene063430.t1 | AT1G59700 | 41.364 | 220 | 120 | 5 | 4 | 214 | 5 | 224 | 5.95e-48 | 157 |
MS.gene063430.t1 | AT2G29470 | 39.151 | 212 | 120 | 6 | 1 | 205 | 1 | 210 | 1.60e-47 | 156 |
MS.gene063430.t1 | AT1G10360 | 41.176 | 221 | 122 | 4 | 1 | 213 | 1 | 221 | 4.43e-47 | 155 |
MS.gene063430.t1 | AT1G74590 | 39.091 | 220 | 124 | 5 | 4 | 217 | 6 | 221 | 3.69e-46 | 153 |
MS.gene063430.t1 | AT1G10370 | 41.284 | 218 | 118 | 5 | 1 | 209 | 1 | 217 | 1.03e-45 | 152 |
MS.gene063430.t1 | AT1G69930 | 39.336 | 211 | 121 | 3 | 3 | 206 | 10 | 220 | 2.79e-45 | 150 |
MS.gene063430.t1 | AT1G59670 | 40.359 | 223 | 122 | 5 | 4 | 216 | 5 | 226 | 5.23e-44 | 147 |
MS.gene063430.t1 | AT1G27140 | 39.450 | 218 | 122 | 4 | 3 | 210 | 4 | 221 | 5.25e-44 | 147 |
MS.gene063430.t1 | AT5G62480 | 36.818 | 220 | 127 | 4 | 2 | 210 | 5 | 223 | 3.96e-43 | 145 |
MS.gene063430.t1 | AT1G27130 | 36.564 | 227 | 132 | 5 | 3 | 220 | 4 | 227 | 3.35e-42 | 142 |
MS.gene063430.t1 | AT1G69920 | 35.965 | 228 | 128 | 6 | 2 | 217 | 31 | 252 | 5.46e-39 | 135 |
MS.gene063430.t1 | AT5G62480 | 30.455 | 220 | 114 | 5 | 2 | 210 | 5 | 196 | 3.78e-26 | 100 |
MS.gene063430.t1 | AT5G62480 | 30.455 | 220 | 115 | 5 | 2 | 210 | 5 | 197 | 3.83e-26 | 100 |
Find 48 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAATTAAAGATTCACAAAT+AGG | 0.256558 | 2.3:-25820542 | None:intergenic |
CCATTATACAATTGGTTTAG+AGG | 0.271694 | 2.3:+25821104 | MS.gene063430:CDS |
TTCAGTATATTGATGAAGTT+TGG | 0.281776 | 2.3:+25820567 | MS.gene063430:CDS |
AAGTGATTCTGCTTAATTAC+TGG | 0.295778 | 2.3:+25820366 | MS.gene063430:CDS |
TTCAATCTGCATGCATCTAT+TGG | 0.310100 | 2.3:-25821186 | None:intergenic |
AATTACTGGCCAAGTCCTTT+TGG | 0.329731 | 2.3:+25820380 | MS.gene063430:CDS |
CAAAATAGCCTTAGCTGAAA+AGG | 0.339349 | 2.3:+25820412 | MS.gene063430:CDS |
CCTCTAAACCAATTGTATAA+TGG | 0.353655 | 2.3:-25821104 | None:intergenic |
CATTTATTCCATTATACAAT+TGG | 0.359711 | 2.3:+25821096 | MS.gene063430:CDS |
TTTCCATTATGAATGAGAAC+AGG | 0.384624 | 2.3:-25820518 | None:intergenic |
ATCCCTGTTCTCATTCATAA+TGG | 0.385871 | 2.3:+25820515 | MS.gene063430:CDS |
TCATGGATCTTATCCTGATC+AGG | 0.386076 | 2.3:-25821227 | None:intergenic |
AAATAGATCTATGAAGTTGC+AGG | 0.398837 | 2.3:+25820939 | MS.gene063430:intron |
AGAGATCACAAGCTAGATTC+TGG | 0.406790 | 2.3:+25820627 | MS.gene063430:CDS |
ATGAAGTTGCAGGGAACAAT+TGG | 0.408328 | 2.3:+25820949 | MS.gene063430:CDS |
GTGGAGCTCAAGAAGAAGTA+TGG | 0.423879 | 2.3:+25821257 | MS.gene063430:CDS |
TTGGCCCAAGCACTGAACTT+AGG | 0.425895 | 2.3:-25821167 | None:intergenic |
TTTAGAGGCTATGAGGCCTT+TGG | 0.433110 | 2.3:+25821119 | MS.gene063430:CDS |
ACTCTTGCTCCAAGAGTTTG+AGG | 0.435255 | 2.3:-25821022 | None:intergenic |
AGTCTCATGCCAAAAGGACT+TGG | 0.442560 | 2.3:-25820389 | None:intergenic |
CATAGAAGCCCTCAAACTCT+TGG | 0.450864 | 2.3:+25821013 | MS.gene063430:CDS |
TTCCAAGTCACTCCCTGATC+AGG | 0.451766 | 2.3:+25821214 | MS.gene063430:CDS |
TGGCCCAAGCACTGAACTTA+GGG | 0.452366 | 2.3:-25821166 | None:intergenic |
CTAGCTTGTGATCTCTGATA+AGG | 0.467136 | 2.3:-25820620 | None:intergenic |
GGTTCATTTGTAACAACAAA+GGG | 0.474781 | 2.3:-25820478 | None:intergenic |
AAAATAGCCTTAGCTGAAAA+GGG | 0.480232 | 2.3:+25820413 | MS.gene063430:CDS |
GTGCCCTAAGTTCAGTGCTT+GGG | 0.482104 | 2.3:+25821163 | MS.gene063430:CDS |
CTCTTGCTCCAAGAGTTTGA+GGG | 0.482617 | 2.3:-25821021 | None:intergenic |
GAGATCACAAGCTAGATTCT+GGG | 0.487661 | 2.3:+25820628 | MS.gene063430:CDS |
CAAACTCTTGGAGCAAGAGT+TGG | 0.489749 | 2.3:+25821025 | MS.gene063430:CDS |
AAACTCTTGGAGCAAGAGTT+GGG | 0.491382 | 2.3:+25821026 | MS.gene063430:CDS |
AGAGCAAGAAGCTGCAAAGA+AGG | 0.498696 | 2.3:+25820986 | MS.gene063430:CDS |
GGCTGATTATATTGATAAGA+AGG | 0.507102 | 2.3:+25820649 | MS.gene063430:CDS |
CAATTGGTTTAGAGGCTATG+AGG | 0.508218 | 2.3:+25821112 | MS.gene063430:CDS |
AGTGCCCTAAGTTCAGTGCT+TGG | 0.527093 | 2.3:+25821162 | MS.gene063430:CDS |
TGAGCTCCACAATCAAATCA+TGG | 0.537535 | 2.3:-25821244 | None:intergenic |
TAAGATCCATGATTTGATTG+TGG | 0.557919 | 2.3:+25821238 | MS.gene063430:CDS |
CATGGATCTTATCCTGATCA+GGG | 0.576720 | 2.3:-25821226 | None:intergenic |
GAAGAAGTATGGCTTTGAGT+AGG | 0.577171 | 2.3:+25821268 | MS.gene063430:CDS |
AATAGATCTATGAAGTTGCA+GGG | 0.596469 | 2.3:+25820940 | MS.gene063430:intron |
GATCTCTGATAAGGATCAGA+AGG | 0.596783 | 2.3:-25820611 | None:intergenic |
GGGTTCATTTGTAACAACAA+AGG | 0.598423 | 2.3:-25820479 | None:intergenic |
TTCCATTATGAATGAGAACA+GGG | 0.600232 | 2.3:-25820517 | None:intergenic |
GTCTACACTGATCTTGCCAA+AGG | 0.602126 | 2.3:-25821135 | None:intergenic |
TAAGGATCAGAAGGCAACAA+AGG | 0.613337 | 2.3:-25820602 | None:intergenic |
AATCACTTCATCATCAGCCA+TGG | 0.632324 | 2.3:-25820351 | None:intergenic |
TGGCAAGATCAGTGTAGACA+AGG | 0.634237 | 2.3:+25821139 | MS.gene063430:CDS |
ATCCTGATCAGGGAGTGACT+TGG | 0.640797 | 2.3:-25821216 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CATTTATTCCATTATACAAT+TGG | + | chr2.3:25821096-25821115 | MS.gene063430:CDS | 20.0% |
!!! | ATTTTGGAGATAATTCATAT+TGG | + | chr2.3:25820798-25820817 | MS.gene063430:intron | 20.0% |
!!! | TGTATCTAAGTTAAGAATTT+TGG | + | chr2.3:25820782-25820801 | MS.gene063430:intron | 20.0% |
!!! | TTTTGGAGATAATTCATATT+GGG | + | chr2.3:25820799-25820818 | MS.gene063430:intron | 20.0% |
! | GCAATTAAAGATTCACAAAT+AGG | - | chr2.3:25820545-25820564 | None:intergenic | 25.0% |
! | GCATGCTAAAAATATCAAAT+GGG | - | chr2.3:25820829-25820848 | None:intergenic | 25.0% |
! | TGCATGCTAAAAATATCAAA+TGG | - | chr2.3:25820830-25820849 | None:intergenic | 25.0% |
! | TTCAGTATATTGATGAAGTT+TGG | + | chr2.3:25820567-25820586 | MS.gene063430:CDS | 25.0% |
!! | TTTCTGAAAAGTTTAGACAT+TGG | + | chr2.3:25820727-25820746 | MS.gene063430:intron | 25.0% |
AAATAGATCTATGAAGTTGC+AGG | + | chr2.3:25820939-25820958 | MS.gene063430:intron | 30.0% | |
AAGTGATTCTGCTTAATTAC+TGG | + | chr2.3:25820366-25820385 | MS.gene063430:CDS | 30.0% | |
AATAGATCTATGAAGTTGCA+GGG | + | chr2.3:25820940-25820959 | MS.gene063430:intron | 30.0% | |
CCTCTAAACCAATTGTATAA+TGG | - | chr2.3:25821107-25821126 | None:intergenic | 30.0% | |
GGCTGATTATATTGATAAGA+AGG | + | chr2.3:25820649-25820668 | MS.gene063430:CDS | 30.0% | |
GGTTCATTTGTAACAACAAA+GGG | - | chr2.3:25820481-25820500 | None:intergenic | 30.0% | |
TAAGATCCATGATTTGATTG+TGG | + | chr2.3:25821238-25821257 | MS.gene063430:CDS | 30.0% | |
TTCCATTATGAATGAGAACA+GGG | - | chr2.3:25820520-25820539 | None:intergenic | 30.0% | |
TTTCCATTATGAATGAGAAC+AGG | - | chr2.3:25820521-25820540 | None:intergenic | 30.0% | |
! | AAAATAGCCTTAGCTGAAAA+GGG | + | chr2.3:25820413-25820432 | MS.gene063430:CDS | 30.0% |
! | CCATTATACAATTGGTTTAG+AGG | + | chr2.3:25821104-25821123 | MS.gene063430:CDS | 30.0% |
!!! | TTCTTGCTCTTCTTCTTTTT+TGG | - | chr2.3:25820976-25820995 | None:intergenic | 30.0% |
!!! | TTGGGAGACAAGAATTTTTT+TGG | + | chr2.3:25821044-25821063 | MS.gene063430:CDS | 30.0% |
ATCCCTGTTCTCATTCATAA+TGG | + | chr2.3:25820515-25820534 | MS.gene063430:CDS | 35.0% | |
GGGTTCATTTGTAACAACAA+AGG | - | chr2.3:25820482-25820501 | None:intergenic | 35.0% | |
TTCAATCTGCATGCATCTAT+TGG | - | chr2.3:25821189-25821208 | None:intergenic | 35.0% | |
! | ACAGGGATTTTCTTATGAAC+AGG | - | chr2.3:25820503-25820522 | None:intergenic | 35.0% |
! | CAAAATAGCCTTAGCTGAAA+AGG | + | chr2.3:25820412-25820431 | MS.gene063430:CDS | 35.0% |
! | CAGGGATTTTCTTATGAACA+GGG | - | chr2.3:25820502-25820521 | None:intergenic | 35.0% |
!! | ATTTTGAGTCTCATGCCAAA+AGG | - | chr2.3:25820398-25820417 | None:intergenic | 35.0% |
!!! | GGAGACAAGAATTTTTTTGG+AGG | + | chr2.3:25821047-25821066 | MS.gene063430:CDS | 35.0% |
AAACTCTTGGAGCAAGAGTT+GGG | + | chr2.3:25821026-25821045 | MS.gene063430:CDS | 40.0% | |
AGAGATCACAAGCTAGATTC+TGG | + | chr2.3:25820627-25820646 | MS.gene063430:CDS | 40.0% | |
ATGAAGTTGCAGGGAACAAT+TGG | + | chr2.3:25820949-25820968 | MS.gene063430:CDS | 40.0% | |
CATGGATCTTATCCTGATCA+GGG | - | chr2.3:25821229-25821248 | None:intergenic | 40.0% | |
GAGATCACAAGCTAGATTCT+GGG | + | chr2.3:25820628-25820647 | MS.gene063430:CDS | 40.0% | |
GATCTCTGATAAGGATCAGA+AGG | - | chr2.3:25820614-25820633 | None:intergenic | 40.0% | |
TAAGGATCAGAAGGCAACAA+AGG | - | chr2.3:25820605-25820624 | None:intergenic | 40.0% | |
TCATGGATCTTATCCTGATC+AGG | - | chr2.3:25821230-25821249 | None:intergenic | 40.0% | |
TGAGCTCCACAATCAAATCA+TGG | - | chr2.3:25821247-25821266 | None:intergenic | 40.0% | |
! | AATTACTGGCCAAGTCCTTT+TGG | + | chr2.3:25820380-25820399 | MS.gene063430:CDS | 40.0% |
! | CAATTGGTTTAGAGGCTATG+AGG | + | chr2.3:25821112-25821131 | MS.gene063430:CDS | 40.0% |
! | CTAGCTTGTGATCTCTGATA+AGG | - | chr2.3:25820623-25820642 | None:intergenic | 40.0% |
! | CTTGATACCCTTTTCAGCTA+AGG | - | chr2.3:25820423-25820442 | None:intergenic | 40.0% |
!!! | TTTTTTGGAGGAGACAAGCT+TGG | + | chr2.3:25821059-25821078 | MS.gene063430:CDS | 40.0% |
ACTCTTGCTCCAAGAGTTTG+AGG | - | chr2.3:25821025-25821044 | None:intergenic | 45.0% | |
AGAGCAAGAAGCTGCAAAGA+AGG | + | chr2.3:25820986-25821005 | MS.gene063430:CDS | 45.0% | |
AGTCTCATGCCAAAAGGACT+TGG | - | chr2.3:25820392-25820411 | None:intergenic | 45.0% | |
CAAACTCTTGGAGCAAGAGT+TGG | + | chr2.3:25821025-25821044 | MS.gene063430:CDS | 45.0% | |
CATAGAAGCCCTCAAACTCT+TGG | + | chr2.3:25821013-25821032 | MS.gene063430:CDS | 45.0% | |
CTCTTGCTCCAAGAGTTTGA+GGG | - | chr2.3:25821024-25821043 | None:intergenic | 45.0% | |
GTCTACACTGATCTTGCCAA+AGG | - | chr2.3:25821138-25821157 | None:intergenic | 45.0% | |
GTGGAGCTCAAGAAGAAGTA+TGG | + | chr2.3:25821257-25821276 | MS.gene063430:CDS | 45.0% | |
TGGCAAGATCAGTGTAGACA+AGG | + | chr2.3:25821139-25821158 | MS.gene063430:CDS | 45.0% | |
TTTAGAGGCTATGAGGCCTT+TGG | + | chr2.3:25821119-25821138 | MS.gene063430:CDS | 45.0% | |
AGTGCCCTAAGTTCAGTGCT+TGG | + | chr2.3:25821162-25821181 | MS.gene063430:CDS | 50.0% | |
ATCCTGATCAGGGAGTGACT+TGG | - | chr2.3:25821219-25821238 | None:intergenic | 50.0% | |
GTGCCCTAAGTTCAGTGCTT+GGG | + | chr2.3:25821163-25821182 | MS.gene063430:CDS | 50.0% | |
TTCCAAGTCACTCCCTGATC+AGG | + | chr2.3:25821214-25821233 | MS.gene063430:CDS | 50.0% | |
!! | TGGCCCAAGCACTGAACTTA+GGG | - | chr2.3:25821169-25821188 | None:intergenic | 50.0% |
!! | TTGGCCCAAGCACTGAACTT+AGG | - | chr2.3:25821170-25821189 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 25820353 | 25821289 | 25820353 | ID=MS.gene063430 |
chr2.3 | mRNA | 25820353 | 25821289 | 25820353 | ID=MS.gene063430.t1;Parent=MS.gene063430 |
chr2.3 | exon | 25820353 | 25820670 | 25820353 | ID=MS.gene063430.t1.exon1;Parent=MS.gene063430.t1 |
chr2.3 | CDS | 25820353 | 25820670 | 25820353 | ID=cds.MS.gene063430.t1;Parent=MS.gene063430.t1 |
chr2.3 | exon | 25820945 | 25821289 | 25820945 | ID=MS.gene063430.t1.exon2;Parent=MS.gene063430.t1 |
chr2.3 | CDS | 25820945 | 25821289 | 25820945 | ID=cds.MS.gene063430.t1;Parent=MS.gene063430.t1 |
Gene Sequence |
Protein sequence |