AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065587

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065587.t1 MTR_2g070150 98.039 204 4 0 1 204 1 204 2.89e-149 413
MS.gene065587.t1 MTR_2g070140 96.552 203 7 0 17 219 1 203 2.70e-146 405
MS.gene065587.t1 MTR_2g070180 87.850 214 26 0 1 214 1 214 5.17e-142 395
MS.gene065587.t1 MTR_2g070130 82.192 219 39 0 1 219 1 219 1.67e-137 384
MS.gene065587.t1 MTR_2g070210 77.376 221 48 1 1 219 1 221 4.35e-129 363
MS.gene065587.t1 MTR_2g070200 73.303 221 57 2 1 219 1 221 4.66e-121 342
MS.gene065587.t1 MTR_2g070060 65.753 219 75 0 1 219 1 219 2.55e-111 318
MS.gene065587.t1 MTR_2g070070 66.667 219 73 0 1 219 1 219 9.67e-109 311
MS.gene065587.t1 MTR_3g467420 65.581 215 74 0 5 219 10 224 2.81e-107 308
MS.gene065587.t1 MTR_8g056940 65.753 219 75 0 1 219 1 219 9.63e-104 299
MS.gene065587.t1 MTR_3g467430 62.673 217 81 0 3 219 8 224 2.65e-102 295
MS.gene065587.t1 MTR_2g070110 63.014 219 80 1 1 219 1 218 2.12e-100 290
MS.gene065587.t1 MTR_4g124130 60.909 220 85 1 1 219 1 220 1.81e-96 280
MS.gene065587.t1 MTR_2g070120 61.502 213 82 0 1 213 1 213 3.32e-95 277
MS.gene065587.t1 MTR_5g076900 53.881 219 99 2 2 219 4 221 1.49e-82 245
MS.gene065587.t1 MTR_0186s0030 69.286 140 43 0 1 140 1 140 1.56e-66 201
MS.gene065587.t1 MTR_8g087425 43.318 217 120 2 2 216 3 218 1.03e-54 174
MS.gene065587.t1 MTR_1g090060 43.810 210 113 3 4 209 3 211 2.03e-54 174
MS.gene065587.t1 MTR_4g059730 43.182 220 118 4 1 215 1 218 4.36e-51 165
MS.gene065587.t1 MTR_7g065740 45.024 211 108 5 3 208 6 213 5.17e-51 165
MS.gene065587.t1 MTR_4g019790 42.788 208 114 4 4 208 7 212 2.88e-50 163
MS.gene065587.t1 MTR_3g099757 42.927 205 114 2 3 205 4 207 5.55e-50 162
MS.gene065587.t1 MTR_5g040430 38.967 213 119 3 2 205 5 215 1.09e-49 162
MS.gene065587.t1 MTR_5g037380 43.662 213 111 5 2 205 3 215 1.23e-49 161
MS.gene065587.t1 MTR_7g065720 42.654 211 113 5 3 208 6 213 1.87e-49 161
MS.gene065587.t1 MTR_8g087410 43.627 204 112 2 4 205 6 208 2.00e-49 161
MS.gene065587.t1 MTR_7g065750 43.062 209 113 4 3 207 6 212 1.60e-48 159
MS.gene065587.t1 MTR_4g019780 40.385 208 121 2 3 208 7 213 1.94e-48 158
MS.gene065587.t1 MTR_7g065660 40.952 210 119 4 3 209 6 213 5.27e-48 157
MS.gene065587.t1 MTR_1g090100 44.231 208 111 3 5 208 3 209 6.42e-48 157
MS.gene065587.t1 MTR_1g090150 38.739 222 122 6 3 216 2 217 2.64e-46 153
MS.gene065587.t1 MTR_7g065630 40.670 209 115 5 3 208 24 226 2.75e-46 153
MS.gene065587.t1 MTR_1g090070 39.906 213 118 5 4 209 9 218 7.12e-46 152
MS.gene065587.t1 MTR_6g080440 42.408 191 105 3 18 205 17 205 1.11e-45 151
MS.gene065587.t1 MTR_7g065710 40.191 209 120 5 1 208 1 205 1.99e-44 148
MS.gene065587.t1 MTR_7g065270 40.670 209 119 5 3 208 6 212 6.52e-44 147
MS.gene065587.t1 MTR_7g065600 38.756 209 123 4 3 208 6 212 1.56e-43 146
MS.gene065587.t1 MTR_7g065265 41.148 209 118 5 3 208 6 212 2.68e-43 145
MS.gene065587.t1 MTR_7g065290 41.148 209 118 5 3 208 6 212 2.80e-43 145
MS.gene065587.t1 MTR_7g065590 37.619 210 126 4 3 209 6 213 4.75e-43 144
MS.gene065587.t1 MTR_1g090090 41.627 209 117 4 4 208 3 210 6.13e-43 144
MS.gene065587.t1 MTR_8g061950 38.208 212 122 3 3 205 4 215 6.79e-43 144
MS.gene065587.t1 MTR_1g115195 40.952 210 117 5 1 205 1 208 2.36e-42 142
MS.gene065587.t1 MTR_7g065700 42.105 209 116 5 1 208 4 208 3.32e-42 142
MS.gene065587.t1 MTR_7g065230 40.865 208 115 5 3 208 6 207 4.03e-42 142
MS.gene065587.t1 MTR_7g065680 40.670 209 115 5 3 208 6 208 1.63e-41 140
MS.gene065587.t1 MTR_7g065640 38.164 207 109 4 3 208 6 194 4.88e-41 139
MS.gene065587.t1 MTR_7g065260 38.806 201 118 5 3 200 13 211 7.82e-35 124
MS.gene065587.t1 MTR_2g072120 64.384 73 25 1 47 118 1 73 1.05e-30 108
MS.gene065587.t1 MTR_4g134370 30.114 176 96 5 3 159 14 181 3.64e-14 69.3
MS.gene065587.t1 MTR_4g134380 31.579 171 98 5 4 159 15 181 3.88e-14 69.3
MS.gene065587.t1 MTR_4g134380 31.515 165 94 5 4 153 15 175 6.72e-13 64.7
MS.gene065587.t1 MTR_4g043640 57.143 42 18 0 148 189 44 85 9.26e-12 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065587.t1 AT1G17180 67.580 219 71 0 1 219 1 219 1.10e-113 324
MS.gene065587.t1 AT1G78380 69.907 216 65 0 1 216 1 216 1.13e-113 324
MS.gene065587.t1 AT1G78340 66.822 214 71 0 1 214 1 214 9.06e-109 311
MS.gene065587.t1 AT1G17170 66.210 219 73 1 1 219 1 218 1.69e-108 311
MS.gene065587.t1 AT1G78360 65.455 220 75 1 1 219 1 220 1.26e-107 308
MS.gene065587.t1 AT1G78370 66.355 214 72 0 1 214 1 214 1.61e-107 308
MS.gene065587.t1 AT1G78320 64.953 214 75 0 1 214 1 214 2.41e-104 300
MS.gene065587.t1 AT1G17190 58.140 215 90 0 3 217 4 218 5.72e-96 279
MS.gene065587.t1 AT1G53680 58.525 217 88 2 5 219 8 224 7.52e-95 276
MS.gene065587.t1 AT3G43800 56.944 216 89 3 3 214 4 219 4.15e-84 249
MS.gene065587.t1 AT1G78320 55.607 214 68 1 1 214 1 187 1.26e-81 242
MS.gene065587.t1 AT2G29420 42.381 210 118 2 2 209 7 215 5.28e-57 180
MS.gene065587.t1 AT3G09270 41.706 211 118 4 3 209 5 214 7.57e-52 167
MS.gene065587.t1 AT2G29450 45.411 207 106 5 3 204 5 209 7.66e-52 167
MS.gene065587.t1 AT2G29440 44.660 206 108 4 3 204 5 208 1.24e-51 166
MS.gene065587.t1 AT2G29490 42.233 206 113 4 3 204 6 209 2.36e-51 166
MS.gene065587.t1 AT2G29480 42.718 206 112 4 3 204 6 209 2.52e-51 166
MS.gene065587.t1 AT1G10360 42.326 215 116 4 2 208 3 217 5.70e-49 160
MS.gene065587.t1 AT1G59700 42.922 219 116 5 3 212 5 223 5.86e-49 160
MS.gene065587.t1 AT1G74590 36.000 225 126 4 3 215 6 224 1.10e-47 157
MS.gene065587.t1 AT2G29460 40.291 206 117 4 3 204 6 209 1.25e-47 156
MS.gene065587.t1 AT2G29470 40.488 205 115 5 5 204 8 210 5.30e-47 155
MS.gene065587.t1 AT1G59670 42.152 223 118 5 3 215 5 226 1.05e-46 154
MS.gene065587.t1 AT1G10370 39.189 222 127 4 2 215 3 224 1.97e-45 151
MS.gene065587.t1 AT1G27130 37.168 226 130 5 3 219 5 227 4.01e-44 147
MS.gene065587.t1 AT5G62480 36.000 225 128 4 3 216 7 226 5.72e-43 145
MS.gene065587.t1 AT1G27140 39.631 217 121 4 3 209 5 221 1.42e-42 144
MS.gene065587.t1 AT1G69930 38.389 211 123 3 5 208 13 223 7.27e-42 142
MS.gene065587.t1 AT1G69920 37.168 226 124 6 5 218 35 254 2.62e-40 138
MS.gene065587.t1 AT5G62480 33.143 175 81 3 3 168 7 154 6.40e-26 100
MS.gene065587.t1 AT5G62480 33.143 175 80 3 3 168 7 153 7.18e-26 100

Find 61 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCTACACTTGGTTTAA+AGG 0.105597 2.2:+21879523 MS.gene065587:CDS
GCTCTTGCTCCAAGAGTTTA+AGG 0.122619 2.2:-21879441 None:intergenic
AGTACAGAGAAGAAGATTTA+AGG 0.220231 2.2:+21878108 MS.gene065587:CDS
GGCTTCTATGAATTCCTTCT+TGG 0.303918 2.2:-21879419 None:intergenic
TTCAGTATATTGATGAGGTT+TGG 0.327749 2.2:+21878228 MS.gene065587:CDS
AAGTGATTCTGCTAGATTAC+TGG 0.343179 2.2:+21878027 MS.gene065587:CDS
CATAGAAGCCCTTAAACTCT+TGG 0.363135 2.2:+21879432 MS.gene065587:CDS
CTCAACCTGCATGCATCTCT+TGG 0.377767 2.2:-21879605 None:intergenic
CAGAATAGCCTTAGCTGAAA+AGG 0.384073 2.2:+21878073 MS.gene065587:CDS
TTTCCATTATGAATGAGAAC+AGG 0.384624 2.2:-21878179 None:intergenic
ATCCCTGTTCTCATTCATAA+TGG 0.385871 2.2:+21878176 MS.gene065587:CDS
CACTTATTCCATTCTACACT+TGG 0.395366 2.2:+21879515 MS.gene065587:CDS
CCATACACCTTATCTTGATC+AGG 0.396532 2.2:-21879646 None:intergenic
GTGGAGATCAGGAAGAAGTT+TGG 0.409480 2.2:+21879676 MS.gene065587:CDS
CTCTTGCTCCAAGAGTTTAA+GGG 0.414095 2.2:-21879440 None:intergenic
ATGAAGTTGGAAGGAACCTT+TGG 0.415645 2.2:+21879368 MS.gene065587:CDS
AGAGATCACAAGCTAGGTTC+TGG 0.428783 2.2:+21878288 MS.gene065587:CDS
TTTAAAGGCTATGAGACCTT+TGG 0.432290 2.2:+21879538 MS.gene065587:CDS
GATTACTGGGTAAGTCCATT+TGG 0.433074 2.2:+21878041 MS.gene065587:CDS
TTGGCCCAAGCAATGAACTT+AGG 0.437475 2.2:-21879586 None:intergenic
CTGGGAGTCAAGACTTACTT+TGG 0.438350 2.2:+21879463 MS.gene065587:CDS
TAAACTCTTGGAGCAAGAGC+TGG 0.443964 2.2:+21879444 MS.gene065587:CDS
GCAATCAAAGATTCACAAAT+GGG 0.448974 2.2:-21878203 None:intergenic
TACTTTGGAGGAGACAAGAT+TGG 0.453564 2.2:+21879478 MS.gene065587:CDS
AGCAATCAAAGATTCACAAA+TGG 0.458138 2.2:-21878204 None:intergenic
TGGCCCAAGCAATGAACTTA+GGG 0.464217 2.2:-21879585 None:intergenic
ATGCCCTAAGTTCATTGCTT+GGG 0.465024 2.2:+21879582 MS.gene065587:CDS
CTAGCTTGTGATCTCTGATA+AGG 0.467136 2.2:-21878281 None:intergenic
AATGCCCTAAGTTCATTGCT+TGG 0.469149 2.2:+21879581 MS.gene065587:CDS
CCTGATCAAGATAAGGTGTA+TGG 0.482118 2.2:+21879646 MS.gene065587:CDS
ATGGCTTCATTGTGGAGATC+AGG 0.483709 2.2:+21879665 MS.gene065587:CDS
GTGAAATAGATCTATGAAGT+TGG 0.485653 2.2:+21879355 MS.gene065587:intron
GGTTCATTTGTAACAACAAA+GGG 0.491203 2.2:-21878139 None:intergenic
GAGATCACAAGCTAGGTTCT+GGG 0.491244 2.2:+21878289 MS.gene065587:CDS
CCTTTAAACCAAGTGTAGAA+TGG 0.500913 2.2:-21879523 None:intergenic
GGCTGATTATGTTGATAAGA+AGG 0.507102 2.2:+21878310 MS.gene065587:CDS
AGAATAGCCTTAGCTGAAAA+GGG 0.511594 2.2:+21878074 MS.gene065587:CDS
ATTCTGACCCTCATGCCAAA+TGG 0.514050 2.2:-21878056 None:intergenic
AGAACAAGAAGCTGCCAAGA+AGG 0.534444 2.2:+21879405 MS.gene065587:CDS
CTCTACATTGATATTGCCAA+AGG 0.536889 2.2:-21879554 None:intergenic
CTTATCAGAGATCACAAGCT+AGG 0.551577 2.2:+21878282 MS.gene065587:CDS
GGAGTCAAGACTTACTTTGG+AGG 0.553330 2.2:+21879466 MS.gene065587:CDS
GTCACTCCCTGATCAAGATA+AGG 0.560024 2.2:+21879639 MS.gene065587:CDS
AATAGATCTATGAAGTTGGA+AGG 0.560610 2.2:+21879359 MS.gene065587:intron
AGTGATTCTGCTAGATTACT+GGG 0.564225 2.2:+21878028 MS.gene065587:CDS
GGTAAGTCCATTTGGCATGA+GGG 0.564671 2.2:+21878049 MS.gene065587:CDS
AAACTCTTGGAGCAAGAGCT+GGG 0.567124 2.2:+21879445 MS.gene065587:CDS
TGGCAATATCAATGTAGAGA+AGG 0.574601 2.2:+21879558 MS.gene065587:CDS
CAGAATCACTTCATCAGCCA+TGG 0.584359 2.2:-21878015 None:intergenic
GGGTAAGTCCATTTGGCATG+AGG 0.587485 2.2:+21878048 MS.gene065587:CDS
TTGGGCCAAGAGATGCATGC+AGG 0.591022 2.2:+21879600 MS.gene065587:CDS
GATCTCTGATAAGGATCAGA+AGG 0.596783 2.2:-21878272 None:intergenic
GGGTTCATTTGTAACAACAA+AGG 0.598423 2.2:-21878140 None:intergenic
TTCCATTATGAATGAGAACA+GGG 0.600232 2.2:-21878178 None:intergenic
TGCTGTTCAGTATATTGATG+AGG 0.604937 2.2:+21878223 MS.gene065587:CDS
ATCTTGATCAGGGAGTGACT+TGG 0.607214 2.2:-21879635 None:intergenic
CATACACCTTATCTTGATCA+GGG 0.608113 2.2:-21879645 None:intergenic
GAAGAAGTTTGGCCTCGAGT+AGG 0.612652 2.2:+21879687 MS.gene065587:CDS
TAAGGATCAGAAGGCAACAA+AGG 0.613337 2.2:-21878263 None:intergenic
TAAGGTGTATGGCTTCATTG+TGG 0.640406 2.2:+21879657 MS.gene065587:CDS
TATCATATCCAACCTACTCG+AGG 0.689726 2.2:-21879699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAGTTAATTATACAAATA+AGG + chr2.2:21879133-21879152 MS.gene065587:intron 15.0%
!! AGAGTTAATTATACAAATAA+GGG + chr2.2:21879134-21879153 MS.gene065587:intron 15.0%
!! CATATAATTCATTCATATTA+CGG - chr2.2:21879160-21879179 None:intergenic 15.0%
!! AATAAAACTTTCATCAACAA+GGG - chr2.2:21878426-21878445 None:intergenic 20.0%
!! ATTTGAAGATAGTTGAAATT+TGG + chr2.2:21879190-21879209 MS.gene065587:intron 20.0%
!! TAATTAACTCTTAGAAATAG+TGG - chr2.2:21879125-21879144 None:intergenic 20.0%
!!! TATTTTGAATGACTTATTAG+AGG + chr2.2:21878542-21878561 MS.gene065587:intron 20.0%
! ATCATCTTAGAAATTGTGAT+TGG - chr2.2:21878919-21878938 None:intergenic 25.0%
! ATTCTTAAAGAGTCTCAAAT+AGG + chr2.2:21878813-21878832 MS.gene065587:intron 25.0%
! CAATGATGAATCATAGAAAA+AGG - chr2.2:21878348-21878367 None:intergenic 25.0%
! GAATAAAACTTTCATCAACA+AGG - chr2.2:21878427-21878446 None:intergenic 25.0%
! TCTGAACATGTATTTATAAG+TGG + chr2.2:21878847-21878866 MS.gene065587:intron 25.0%
! TTGCTTAGAATGTTTATCAT+TGG + chr2.2:21878382-21878401 MS.gene065587:intron 25.0%
!! GCTTATTAAAATGTGCTTTT+CGG + chr2.2:21878639-21878658 MS.gene065587:intron 25.0%
!!! ACCTCATAAACTGATTTTTT+GGG + chr2.2:21878881-21878900 MS.gene065587:intron 25.0%
AAAGCCTCTGATAAGATTTA+TGG + chr2.2:21878942-21878961 MS.gene065587:intron 30.0%
AACATGTGTTTATAAGTGGA+GGG + chr2.2:21879052-21879071 MS.gene065587:intron 30.0%
AACTCTTAGAAATAGTGGTT+GGG - chr2.2:21879120-21879139 None:intergenic 30.0%
AAGCCTCTGATAAGATTTAT+GGG + chr2.2:21878943-21878962 MS.gene065587:intron 30.0%
AATAGATCTATGAAGTTGGA+AGG + chr2.2:21879359-21879378 MS.gene065587:intron 30.0%
AGCAATCAAAGATTCACAAA+TGG - chr2.2:21878207-21878226 None:intergenic 30.0%
AGTACAGAGAAGAAGATTTA+AGG + chr2.2:21878108-21878127 MS.gene065587:CDS 30.0%
CATGAACATGTGTTTATAAG+TGG + chr2.2:21879048-21879067 MS.gene065587:intron 30.0%
GAACATGTATTTATAAGTGG+AGG + chr2.2:21878850-21878869 MS.gene065587:intron 30.0%
GCAATCAAAGATTCACAAAT+GGG - chr2.2:21878206-21878225 None:intergenic 30.0%
GGTTCATTTGTAACAACAAA+GGG - chr2.2:21878142-21878161 None:intergenic 30.0%
GTCTCAAATAGGATTAAAGA+TGG + chr2.2:21878824-21878843 MS.gene065587:intron 30.0%
GTGAAATAGATCTATGAAGT+TGG + chr2.2:21879355-21879374 MS.gene065587:intron 30.0%
TAACTCTTAGAAATAGTGGT+TGG - chr2.2:21879121-21879140 None:intergenic 30.0%
TTCAGTATATTGATGAGGTT+TGG + chr2.2:21878228-21878247 MS.gene065587:CDS 30.0%
TTCCATTATGAATGAGAACA+GGG - chr2.2:21878181-21878200 None:intergenic 30.0%
TTTCCATTATGAATGAGAAC+AGG - chr2.2:21878182-21878201 None:intergenic 30.0%
!! TTGATATTTTTCAGCATGCA+TGG + chr2.2:21879243-21879262 MS.gene065587:intron 30.0%
!!! CACCTCATAAACTGATTTTT+TGG + chr2.2:21878880-21878899 MS.gene065587:intron 30.0%
!!! CCTCATAAACTGATTTTTTG+GGG + chr2.2:21878882-21878901 MS.gene065587:intron 30.0%
!!! TGATTTTTTGGGGTTGTATT+AGG + chr2.2:21878892-21878911 MS.gene065587:intron 30.0%
!!! TTCTTGTTCTTCTCCTTTTT+TGG - chr2.2:21879395-21879414 None:intergenic 30.0%
AAGTGATTCTGCTAGATTAC+TGG + chr2.2:21878027-21878046 MS.gene065587:CDS 35.0%
AGTGATTCTGCTAGATTACT+GGG + chr2.2:21878028-21878047 MS.gene065587:CDS 35.0%
ATCCCTGTTCTCATTCATAA+TGG + chr2.2:21878176-21878195 MS.gene065587:CDS 35.0%
ATTAACGGAAACCTAATAGC+AGG - chr2.2:21878972-21878991 None:intergenic 35.0%
CACTTATTCCATTCTACACT+TGG + chr2.2:21879515-21879534 MS.gene065587:CDS 35.0%
CATACACCTTATCTTGATCA+GGG - chr2.2:21879648-21879667 None:intergenic 35.0%
CCATTCTACACTTGGTTTAA+AGG + chr2.2:21879523-21879542 MS.gene065587:CDS 35.0%
CCCCAAAAAATCAGTTTATG+AGG - chr2.2:21878885-21878904 None:intergenic 35.0%
CCTTTAAACCAAGTGTAGAA+TGG - chr2.2:21879526-21879545 None:intergenic 35.0%
CTCTACATTGATATTGCCAA+AGG - chr2.2:21879557-21879576 None:intergenic 35.0%
GAACATGTGTTTATAAGTGG+AGG + chr2.2:21879051-21879070 MS.gene065587:intron 35.0%
GGGTTCATTTGTAACAACAA+AGG - chr2.2:21878143-21878162 None:intergenic 35.0%
TGACCCATAAATCTTATCAG+AGG - chr2.2:21878949-21878968 None:intergenic 35.0%
TGCTGTTCAGTATATTGATG+AGG + chr2.2:21878223-21878242 MS.gene065587:CDS 35.0%
TGGCAATATCAATGTAGAGA+AGG + chr2.2:21879558-21879577 MS.gene065587:CDS 35.0%
TTCATCAACAAGGGACAAAA+GGG - chr2.2:21878417-21878436 None:intergenic 35.0%
TTTAAAGGCTATGAGACCTT+TGG + chr2.2:21879538-21879557 MS.gene065587:CDS 35.0%
TTTCATCAACAAGGGACAAA+AGG - chr2.2:21878418-21878437 None:intergenic 35.0%
! AATCTTTTGTCCGATGTGAT+TGG - chr2.2:21879027-21879046 None:intergenic 35.0%
! ACAGGGATTTTCTTATGAAC+AGG - chr2.2:21878164-21878183 None:intergenic 35.0%
! AGAATAGCCTTAGCTGAAAA+GGG + chr2.2:21878074-21878093 MS.gene065587:CDS 35.0%
! CAGGGATTTTCTTATGAACA+GGG - chr2.2:21878163-21878182 None:intergenic 35.0%
! GACATGTGAATAAGCTGTTT+TGG - chr2.2:21878604-21878623 None:intergenic 35.0%
! GGCTGATTATGTTGATAAGA+AGG + chr2.2:21878310-21878329 MS.gene065587:CDS 35.0%
! TTTGATACCCTTTTCAGCTA+AGG - chr2.2:21878084-21878103 None:intergenic 35.0%
AATGCCCTAAGTTCATTGCT+TGG + chr2.2:21879581-21879600 MS.gene065587:CDS 40.0%
AGGAACCTTTGGACCAAAAA+AGG + chr2.2:21879379-21879398 MS.gene065587:CDS 40.0%
ATGAAGTTGGAAGGAACCTT+TGG + chr2.2:21879368-21879387 MS.gene065587:CDS 40.0%
ATGCCCTAAGTTCATTGCTT+GGG + chr2.2:21879582-21879601 MS.gene065587:CDS 40.0%
CATAGAAGCCCTTAAACTCT+TGG + chr2.2:21879432-21879451 MS.gene065587:CDS 40.0%
CCATACACCTTATCTTGATC+AGG - chr2.2:21879649-21879668 None:intergenic 40.0%
CCTGATCAAGATAAGGTGTA+TGG + chr2.2:21879646-21879665 MS.gene065587:CDS 40.0%
CTCTTGCTCCAAGAGTTTAA+GGG - chr2.2:21879443-21879462 None:intergenic 40.0%
CTTATCAGAGATCACAAGCT+AGG + chr2.2:21878282-21878301 MS.gene065587:CDS 40.0%
GAGAAAAACAACAGCTACCT+AGG - chr2.2:21879295-21879314 None:intergenic 40.0%
GATCTCTGATAAGGATCAGA+AGG - chr2.2:21878275-21878294 None:intergenic 40.0%
GATTACTGGGTAAGTCCATT+TGG + chr2.2:21878041-21878060 MS.gene065587:CDS 40.0%
GCAAGTATTAGTCATAGCCT+AGG + chr2.2:21879275-21879294 MS.gene065587:intron 40.0%
GGCTTCTATGAATTCCTTCT+TGG - chr2.2:21879422-21879441 None:intergenic 40.0%
TAAGGATCAGAAGGCAACAA+AGG - chr2.2:21878266-21878285 None:intergenic 40.0%
TAAGGTGTATGGCTTCATTG+TGG + chr2.2:21879657-21879676 MS.gene065587:CDS 40.0%
TGGTTCGTAGACTAAATGGT+GGG - chr2.2:21879001-21879020 None:intergenic 40.0%
TTTATGGGTCACCTGCTATT+AGG + chr2.2:21878958-21878977 MS.gene065587:intron 40.0%
! CAGAATAGCCTTAGCTGAAA+AGG + chr2.2:21878073-21878092 MS.gene065587:CDS 40.0%
! CTAGCTTGTGATCTCTGATA+AGG - chr2.2:21878284-21878303 None:intergenic 40.0%
! GTCTTGGTTCGTAGACTAAA+TGG - chr2.2:21879005-21879024 None:intergenic 40.0%
! TACTTTGGAGGAGACAAGAT+TGG + chr2.2:21879478-21879497 MS.gene065587:CDS 40.0%
! TTGGTTCGTAGACTAAATGG+TGG - chr2.2:21879002-21879021 None:intergenic 40.0%
!! AATGGTGGGTAGCTCATTAA+CGG - chr2.2:21878987-21879006 None:intergenic 40.0%
!!! AGGAGACAAGATTGGTTTTG+TGG + chr2.2:21879486-21879505 MS.gene065587:CDS 40.0%
!!! CTTCTCCTTTTTTGGTCCAA+AGG - chr2.2:21879387-21879406 None:intergenic 40.0%
AAACTCTTGGAGCAAGAGCT+GGG + chr2.2:21879445-21879464 MS.gene065587:CDS 45.0%
AGAACAAGAAGCTGCCAAGA+AGG + chr2.2:21879405-21879424 MS.gene065587:CDS 45.0%
AGAGATCACAAGCTAGGTTC+TGG + chr2.2:21878288-21878307 MS.gene065587:CDS 45.0%
ATCTTGATCAGGGAGTGACT+TGG - chr2.2:21879638-21879657 None:intergenic 45.0%
ATGGCTTCATTGTGGAGATC+AGG + chr2.2:21879665-21879684 MS.gene065587:CDS 45.0%
ATTCTGACCCTCATGCCAAA+TGG - chr2.2:21878059-21878078 None:intergenic 45.0%
CGAACCAAGACCAATCACAT+CGG + chr2.2:21879014-21879033 MS.gene065587:intron 45.0%
CTGGGAGTCAAGACTTACTT+TGG + chr2.2:21879463-21879482 MS.gene065587:CDS 45.0%
GAGATCACAAGCTAGGTTCT+GGG + chr2.2:21878289-21878308 MS.gene065587:CDS 45.0%
GCTCTTGCTCCAAGAGTTTA+AGG - chr2.2:21879444-21879463 None:intergenic 45.0%
GGAGTCAAGACTTACTTTGG+AGG + chr2.2:21879466-21879485 MS.gene065587:CDS 45.0%
GGTAAGTCCATTTGGCATGA+GGG + chr2.2:21878049-21878068 MS.gene065587:CDS 45.0%
GTAATTCTCTCCACGCAAGT+CGG + chr2.2:21879074-21879093 MS.gene065587:intron 45.0%
GTCACTCCCTGATCAAGATA+AGG + chr2.2:21879639-21879658 MS.gene065587:CDS 45.0%
GTGGAGATCAGGAAGAAGTT+TGG + chr2.2:21879676-21879695 MS.gene065587:CDS 45.0%
TAAACTCTTGGAGCAAGAGC+TGG + chr2.2:21879444-21879463 MS.gene065587:CDS 45.0%
TGGCCCAAGCAATGAACTTA+GGG - chr2.2:21879588-21879607 None:intergenic 45.0%
TTGGCCCAAGCAATGAACTT+AGG - chr2.2:21879589-21879608 None:intergenic 45.0%
!! TTGTCCGATGTGATTGGTCT+TGG - chr2.2:21879021-21879040 None:intergenic 45.0%
!!! CGGTTTTGTGGTGTTGTGTT+AGG + chr2.2:21879094-21879113 MS.gene065587:intron 45.0%
CTCAACCTGCATGCATCTCT+TGG - chr2.2:21879608-21879627 None:intergenic 50.0%
GGGTAAGTCCATTTGGCATG+AGG + chr2.2:21878048-21878067 MS.gene065587:CDS 50.0%
TTGGGCCAAGAGATGCATGC+AGG + chr2.2:21879600-21879619 MS.gene065587:CDS 55.0%
!! CACCACAAAACCGACTTGCG+TGG - chr2.2:21879087-21879106 None:intergenic 55.0%
!! CTCCACGCAAGTCGGTTTTG+TGG + chr2.2:21879082-21879101 MS.gene065587:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 21878017 21879708 21878017 ID=MS.gene065587
chr2.2 mRNA 21878017 21879708 21878017 ID=MS.gene065587.t1;Parent=MS.gene065587
chr2.2 exon 21878017 21878331 21878017 ID=MS.gene065587.t1.exon1;Parent=MS.gene065587.t1
chr2.2 CDS 21878017 21878331 21878017 ID=cds.MS.gene065587.t1;Parent=MS.gene065587.t1
chr2.2 exon 21879364 21879708 21879364 ID=MS.gene065587.t1.exon2;Parent=MS.gene065587.t1
chr2.2 CDS 21879364 21879708 21879364 ID=cds.MS.gene065587.t1;Parent=MS.gene065587.t1
Gene Sequence

>MS.gene065587

ATGGCTGATGAAGTGATTCTGCTAGATTACTGGGTAAGTCCATTTGGCATGAGGGTCAGAATAGCCTTAGCTGAAAAGGGTATCAAACATGAGTACAGAGAAGAAGATTTAAGGAACAAGAGCCCTTTGTTGTTACAAATGAACCCTGTTCATAAGAAAATCCCTGTTCTCATTCATAATGGAAAACCCATTTGTGAATCTTTGATTGCTGTTCAGTATATTGATGAGGTTTGGAATGATAAGTCTCCTTTGTTGCCTTCTGATCCTTATCAGAGATCACAAGCTAGGTTCTGGGCTGATTATGTTGATAAGAAGGTATATTAATTTACCTTTTTCTATGATTCATCATTGCATGTGATTGTTTGTTGCTTAGAATGTTTATCATTGGTTTTGTTGACCCTTTTGTCCCTTGTTGATGAAAGTTTTATTCTTTTGCATTTTTAGCATTAATTCTTTAATTAATTCTTTTGCATGTGATTGTGTTTTTTCTTTTTTCATTTTTGAAATTAAACTTTTTTTAGAGCTTATTTTGAATGACTTATTAGAGGTTTATAGCATATATGAGACTGTTTTATGAGAGTTTACCAAAACAGCTTATTCACATGTCTATGATCTGCTTTTAGCTTATTAAAATGTGCTTTTCGGCTTAGTTTCGTAACTCAAAGATAGCTTGTAACTCAAAGATAGCTTATGAAAGCAACTTATAGTTTATATACACTTTAATTTTTGCTTTAAAAATAGTTTATATATGAGCACTTCTATGATAAAATTAGCTACTTAACTACGTTATTAAGTTATTCTTAAAGAGTCTCAAATAGGATTAAAGATGGTCTGAACATGTATTTATAAGTGGAGGCAATTCTCACCTCATAAACTGATTTTTTGGGGTTGTATTAGGTCCAATCACAATTTCTAAGATGATATCAAAGCCTCTGATAAGATTTATGGGTCACCTGCTATTAGGTTTCCGTTAATGAGCTACCCACCATTTAGTCTACGAACCAAGACCAATCACATCGGACAAAAGATTGCATGAACATGTGTTTATAAGTGGAGGGTAATTCTCTCCACGCAAGTCGGTTTTGTGGTGTTGTGTTAGGCCCAACCACTATTTCTAAGAGTTAATTATACAAATAAGGGCCGTAATATGAATGAATTATATGTATCTCAACTATTTGAAGATAGTTGAAATTTGGAACACTTTTCTTTTGAACAATACAAGCTATTTGATATTTTTCAGCATGCATGGTCACTATTAGCAAGTATTAGTCATAGCCTAGGTAGCTGTTGTTTTTCTCGTTATTGCATTTGATGATCTAATTGTGTGTGATTCTCATTGTGAAATAGATCTATGAAGTTGGAAGGAACCTTTGGACCAAAAAAGGAGAAGAACAAGAAGCTGCCAAGAAGGAATTCATAGAAGCCCTTAAACTCTTGGAGCAAGAGCTGGGAGTCAAGACTTACTTTGGAGGAGACAAGATTGGTTTTGTGGATGTAGCACTTATTCCATTCTACACTTGGTTTAAAGGCTATGAGACCTTTGGCAATATCAATGTAGAGAAGGAATGCCCTAAGTTCATTGCTTGGGCCAAGAGATGCATGCAGGTTGAGAGTGTTTCCAAGTCACTCCCTGATCAAGATAAGGTGTATGGCTTCATTGTGGAGATCAGGAAGAAGTTTGGCCTCGAGTAG
Protein sequence

>MS.gene065587.t1

MADEVILLDYWVSPFGMRVRIALAEKGIKHEYREEDLRNKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQYIDEVWNDKSPLLPSDPYQRSQARFWADYVDKKIYEVGRNLWTKKGEEQEAAKKEFIEALKLLEQELGVKTYFGGDKIGFVDVALIPFYTWFKGYETFGNINVEKECPKFIAWAKRCMQVESVSKSLPDQDKVYGFIVEIRKKFGLE