Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47554.t1 | XP_013456902.1 | 97.2 | 464 | 7 | 1 | 1 | 458 | 1 | 464 | 2.90E-251 | 877.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47554.t1 | Q6Z6S1 | 60.4 | 457 | 168 | 5 | 3 | 458 | 2 | 446 | 8.9e-148 | 525.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47554.t1 | A0A072UPJ9 | 97.2 | 464 | 7 | 1 | 1 | 458 | 1 | 464 | 2.1e-251 | 877.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene47554 | 0.864418 | 1.23E-64 | -1.69E-46 |
| MS.gene049159 | MS.gene47554 | 0.808747 | 2.66E-50 | -1.69E-46 |
| MS.gene049166 | MS.gene47554 | 0.82938 | 5.32E-55 | -1.69E-46 |
| MS.gene049178 | MS.gene47554 | 0.80269 | 4.98E-49 | -1.69E-46 |
| MS.gene049208 | MS.gene47554 | 0.809749 | 1.62E-50 | -1.69E-46 |
| MS.gene049368 | MS.gene47554 | 0.827923 | 1.20E-54 | -1.69E-46 |
| MS.gene049887 | MS.gene47554 | 0.817544 | 3.12E-52 | -1.69E-46 |
| MS.gene050084 | MS.gene47554 | 0.828977 | 6.66E-55 | -1.69E-46 |
| MS.gene050085 | MS.gene47554 | 0.845036 | 5.21E-59 | -1.69E-46 |
| MS.gene050114 | MS.gene47554 | 0.84358 | 1.28E-58 | -1.69E-46 |
| MS.gene050116 | MS.gene47554 | 0.818165 | 2.26E-52 | -1.69E-46 |
| MS.gene050213 | MS.gene47554 | 0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene050224 | MS.gene47554 | 0.812592 | 3.92E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene47554 | 0.821008 | 5.07E-53 | -1.69E-46 |
| MS.gene050359 | MS.gene47554 | 0.822118 | 2.81E-53 | -1.69E-46 |
| MS.gene050439 | MS.gene47554 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene050551 | MS.gene47554 | 0.864684 | 1.02E-64 | -1.69E-46 |
| MS.gene050556 | MS.gene47554 | 0.820214 | 7.72E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene47554 | 0.840453 | 8.62E-58 | -1.69E-46 |
| MS.gene050689 | MS.gene47554 | 0.845505 | 3.90E-59 | -1.69E-46 |
| MS.gene050838 | MS.gene47554 | 0.860417 | 2.10E-63 | -1.69E-46 |
| MS.gene051003 | MS.gene47554 | 0.813985 | 1.94E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene47554 | 0.846375 | 2.26E-59 | -1.69E-46 |
| MS.gene051233 | MS.gene47554 | 0.801112 | 1.05E-48 | -1.69E-46 |
| MS.gene051234 | MS.gene47554 | 0.81275 | 3.62E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene47554 | 0.824762 | 6.77E-54 | -1.69E-46 |
| MS.gene051381 | MS.gene47554 | 0.849591 | 2.93E-60 | -1.69E-46 |
| MS.gene051382 | MS.gene47554 | 0.807981 | 3.88E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene47554 | 0.808487 | 3.02E-50 | -1.69E-46 |
| MS.gene05188 | MS.gene47554 | 0.811585 | 6.50E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene47554 | 0.832393 | 9.70E-56 | -1.69E-46 |
| MS.gene052307 | MS.gene47554 | 0.846977 | 1.55E-59 | -1.69E-46 |
| MS.gene052335 | MS.gene47554 | 0.81666 | 4.93E-52 | -1.69E-46 |
| MS.gene052342 | MS.gene47554 | 0.816395 | 5.65E-52 | -1.69E-46 |
| MS.gene052397 | MS.gene47554 | 0.839249 | 1.77E-57 | -1.69E-46 |
| MS.gene052434 | MS.gene47554 | 0.834891 | 2.31E-56 | -1.69E-46 |
| MS.gene052609 | MS.gene47554 | 0.883199 | 5.49E-71 | -1.69E-46 |
| MS.gene052665 | MS.gene47554 | 0.807163 | 5.78E-50 | -1.69E-46 |
| MS.gene052776 | MS.gene47554 | 0.83359 | 4.89E-56 | -1.69E-46 |
| MS.gene052932 | MS.gene47554 | 0.801847 | 7.42E-49 | -1.69E-46 |
| MS.gene052994 | MS.gene47554 | 0.823268 | 1.52E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene47554 | 0.838031 | 3.66E-57 | -1.69E-46 |
| MS.gene053079 | MS.gene47554 | 0.843125 | 1.70E-58 | -1.69E-46 |
| MS.gene053143 | MS.gene47554 | 0.836295 | 1.02E-56 | -1.69E-46 |
| MS.gene05315 | MS.gene47554 | 0.813561 | 2.40E-51 | -1.69E-46 |
| MS.gene053167 | MS.gene47554 | 0.818835 | 1.59E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene47554 | 0.813274 | 2.78E-51 | -1.69E-46 |
| MS.gene053381 | MS.gene47554 | 0.835039 | 2.12E-56 | -1.69E-46 |
| MS.gene05364 | MS.gene47554 | 0.810183 | 1.31E-50 | -1.69E-46 |
| MS.gene053895 | MS.gene47554 | -0.823158 | 1.61E-53 | -1.69E-46 |
| MS.gene05462 | MS.gene47554 | 0.80252 | 5.40E-49 | -1.69E-46 |
| MS.gene054824 | MS.gene47554 | 0.830713 | 2.52E-55 | -1.69E-46 |
| MS.gene05517 | MS.gene47554 | 0.808929 | 2.43E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene47554 | 0.839138 | 1.90E-57 | -1.69E-46 |
| MS.gene055313 | MS.gene47554 | 0.850523 | 1.61E-60 | -1.69E-46 |
| MS.gene055314 | MS.gene47554 | 0.838905 | 2.18E-57 | -1.69E-46 |
| MS.gene055465 | MS.gene47554 | 0.813676 | 2.27E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene47554 | 0.805089 | 1.58E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene47554 | 0.858509 | 7.85E-63 | -1.69E-46 |
| MS.gene055512 | MS.gene47554 | 0.808775 | 2.62E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene47554 | 0.881488 | 2.30E-70 | -1.69E-46 |
| MS.gene055864 | MS.gene47554 | 0.831206 | 1.90E-55 | -1.69E-46 |
| MS.gene056043 | MS.gene47554 | -0.80377 | 2.97E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene47554 | 0.830574 | 2.72E-55 | -1.69E-46 |
| MS.gene056097 | MS.gene47554 | 0.824656 | 7.17E-54 | -1.69E-46 |
| MS.gene056181 | MS.gene47554 | 0.895526 | 8.82E-76 | -1.69E-46 |
| MS.gene056308 | MS.gene47554 | 0.824682 | 7.07E-54 | -1.69E-46 |
| MS.gene056390 | MS.gene47554 | 0.8151 | 1.10E-51 | -1.69E-46 |
| MS.gene056403 | MS.gene47554 | 0.827068 | 1.92E-54 | -1.69E-46 |
| MS.gene056432 | MS.gene47554 | 0.827745 | 1.32E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene47554 | 0.843 | 1.83E-58 | -1.69E-46 |
| MS.gene056552 | MS.gene47554 | 0.810033 | 1.41E-50 | -1.69E-46 |
| MS.gene056605 | MS.gene47554 | 0.808185 | 3.51E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene47554 | 0.819224 | 1.30E-52 | -1.69E-46 |
| MS.gene056831 | MS.gene47554 | 0.829155 | 6.03E-55 | -1.69E-46 |
| MS.gene057034 | MS.gene47554 | 0.817821 | 2.70E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene47554 | 0.802797 | 4.73E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene47554 | 0.800887 | 1.17E-48 | -1.69E-46 |
| MS.gene057360 | MS.gene47554 | 0.840511 | 8.32E-58 | -1.69E-46 |
| MS.gene057869 | MS.gene47554 | 0.805762 | 1.14E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene47554 | 0.836606 | 8.48E-57 | -1.69E-46 |
| MS.gene058292 | MS.gene47554 | 0.85207 | 5.87E-61 | -1.69E-46 |
| MS.gene058638 | MS.gene47554 | 0.87319 | 1.78E-67 | -1.69E-46 |
| MS.gene058639 | MS.gene47554 | 0.878894 | 1.94E-69 | -1.69E-46 |
| MS.gene058646 | MS.gene47554 | 0.802001 | 6.90E-49 | -1.69E-46 |
| MS.gene058647 | MS.gene47554 | 0.801955 | 7.05E-49 | -1.69E-46 |
| MS.gene058668 | MS.gene47554 | 0.813609 | 2.35E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene47554 | 0.853698 | 2.01E-61 | -1.69E-46 |
| MS.gene05880 | MS.gene47554 | 0.81441 | 1.56E-51 | -1.69E-46 |
| MS.gene059007 | MS.gene47554 | 0.800354 | 1.50E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene47554 | 0.802751 | 4.83E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene47554 | 0.814257 | 1.69E-51 | -1.69E-46 |
| MS.gene059171 | MS.gene47554 | 0.840837 | 6.83E-58 | -1.69E-46 |
| MS.gene059331 | MS.gene47554 | 0.8215 | 3.91E-53 | -1.69E-46 |
| MS.gene059335 | MS.gene47554 | 0.821132 | 4.75E-53 | -1.69E-46 |
| MS.gene059725 | MS.gene47554 | 0.839579 | 1.46E-57 | -1.69E-46 |
| MS.gene05978 | MS.gene47554 | 0.841443 | 4.74E-58 | -1.69E-46 |
| MS.gene059965 | MS.gene47554 | 0.806121 | 9.59E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene47554 | 0.812131 | 4.95E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene47554 | 0.801532 | 8.61E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene47554 | 0.830923 | 2.23E-55 | -1.69E-46 |
| MS.gene060380 | MS.gene47554 | 0.805587 | 1.24E-49 | -1.69E-46 |
| MS.gene060400 | MS.gene47554 | 0.80973 | 1.64E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene47554 | 0.800006 | 1.76E-48 | -1.69E-46 |
| MS.gene060637 | MS.gene47554 | 0.848157 | 7.33E-60 | -1.69E-46 |
| MS.gene060763 | MS.gene47554 | 0.82158 | 3.74E-53 | -1.69E-46 |
| MS.gene060870 | MS.gene47554 | 0.811706 | 6.12E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene47554 | 0.825702 | 4.06E-54 | -1.69E-46 |
| MS.gene061006 | MS.gene47554 | 0.868213 | 7.72E-66 | -1.69E-46 |
| MS.gene061100 | MS.gene47554 | 0.82194 | 3.09E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26605 | MS.gene47554 | PPI |
| MS.gene47554 | MS.gene26426 | PPI |
| MS.gene47554 | MS.gene39554 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47554.t1 | MTR_4g087935 | 97.198 | 464 | 7 | 1 | 1 | 458 | 1 | 464 | 0.0 | 928 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47554.t1 | AT2G34040 | 70.087 | 458 | 131 | 2 | 1 | 458 | 1 | 452 | 0.0 | 657 |
| MS.gene47554.t1 | AT2G34040 | 70.087 | 458 | 131 | 2 | 1 | 458 | 1 | 452 | 0.0 | 657 |
| MS.gene47554.t1 | AT1G29030 | 68.410 | 459 | 139 | 2 | 1 | 459 | 1 | 453 | 0.0 | 650 |
| MS.gene47554.t1 | AT2G34040 | 69.266 | 436 | 128 | 2 | 1 | 436 | 1 | 430 | 0.0 | 617 |
| MS.gene47554.t1 | AT1G29030 | 65.359 | 459 | 131 | 2 | 1 | 459 | 1 | 431 | 0.0 | 611 |
| MS.gene47554.t1 | AT1G23935 | 35.509 | 383 | 176 | 11 | 87 | 458 | 24 | 346 | 1.50e-50 | 186 |
| MS.gene47554.t1 | AT3G19515 | 43.498 | 223 | 122 | 2 | 240 | 458 | 79 | 301 | 1.34e-47 | 176 |
| MS.gene47554.t1 | AT3G19515 | 47.368 | 133 | 68 | 1 | 12 | 142 | 1 | 133 | 5.21e-31 | 127 |
| MS.gene47554.t1 | AT1G23935 | 35.484 | 341 | 157 | 10 | 87 | 424 | 24 | 304 | 1.67e-43 | 165 |
| MS.gene47554.t1 | AT1G23935 | 35.484 | 341 | 157 | 10 | 87 | 424 | 24 | 304 | 1.74e-43 | 165 |
Find 87 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAGAGTTTGAGCCTATT+TGG | 0.180255 | 4.3:+25458729 | MS.gene47554:CDS |
| TATAGAATTTCGAATGTTTA+TGG | 0.180281 | 4.3:+25458701 | MS.gene47554:CDS |
| AAGTTCTTTCCTGAACTTTC+CGG | 0.262685 | 4.3:+25456659 | MS.gene47554:CDS |
| TGTGGTTACAAAATTGTTAC+TGG | 0.293298 | 4.3:+25461723 | MS.gene47554:CDS |
| TTGAAGAAGGGTCGAGGTTC+TGG | 0.305212 | 4.3:+25463385 | MS.gene47554:CDS |
| GTGTCGTTCCATTTCCTCTT+GGG | 0.311853 | 4.3:-25458528 | None:intergenic |
| ACTCAATACTCATCTTGATT+TGG | 0.327382 | 4.3:+25456688 | MS.gene47554:CDS |
| TGTTATTCCTGCCAGCTTCC+TGG | 0.336157 | 4.3:+25459793 | MS.gene47554:intron |
| CTTCTTCAATGCAATATTGT+TGG | 0.340511 | 4.3:-25463371 | None:intergenic |
| CAAATAGGCTCAAACTCTTC+AGG | 0.344533 | 4.3:-25458728 | None:intergenic |
| TTTGTAACCACATAAACTAT+TGG | 0.362776 | 4.3:-25461712 | None:intergenic |
| GGCTGAAAACAACAAATCTA+TGG | 0.365544 | 4.3:+25462691 | MS.gene47554:CDS |
| CAGAGTTTAGAAGATGTAAC+TGG | 0.369726 | 4.3:+25458678 | MS.gene47554:intron |
| CATCGTCAAAATATTATTGC+AGG | 0.371200 | 4.3:-25462881 | None:intergenic |
| AAAGTACTTACCACAACAAT+TGG | 0.378420 | 4.3:-25459087 | None:intergenic |
| ATCGAGAAGCTCTACCAATA+TGG | 0.380527 | 4.3:+25456429 | MS.gene47554:CDS |
| TGTGTCGTTCCATTTCCTCT+TGG | 0.385006 | 4.3:-25458529 | None:intergenic |
| TTCAACAGTTCAGCTTTGAT+AGG | 0.395370 | 4.3:-25458503 | None:intergenic |
| TTTAACCTGAGATTTGTCTT+TGG | 0.398392 | 4.3:-25456469 | None:intergenic |
| GTTGAAGCCCCAAGAGGAAA+TGG | 0.404679 | 4.3:+25458520 | MS.gene47554:CDS |
| AGTTGAGTTGCTCGCCATAT+TGG | 0.407050 | 4.3:-25456443 | None:intergenic |
| TTCAGCAACTGAACAATAGA+AGG | 0.408687 | 4.3:-25459895 | None:intergenic |
| CTCGATGTAAGCAGCTTCTT+CGG | 0.414250 | 4.3:-25456412 | None:intergenic |
| AATATTGTTGGATCCATTGC+CGG | 0.421230 | 4.3:-25463359 | None:intergenic |
| TCGGAAGGTTCAGCAGTCAT+TGG | 0.421908 | 4.3:-25456393 | None:intergenic |
| AGTGCAACACCGGAAAGTTC+AGG | 0.424950 | 4.3:-25456668 | None:intergenic |
| TGTAAAATTCATCTCTTCTC+CGG | 0.428906 | 4.3:-25461546 | None:intergenic |
| CATAAACTATTGGTGGCATT+AGG | 0.430397 | 4.3:-25461702 | None:intergenic |
| TTTGAGCCTATTTGGAGAAA+AGG | 0.433300 | 4.3:+25458737 | MS.gene47554:CDS |
| TACATGACTTGGAAGAAAAC+CGG | 0.437540 | 4.3:+25461527 | MS.gene47554:CDS |
| GATCCATTGCCGGTAGTAGC+TGG | 0.447874 | 4.3:-25463349 | None:intergenic |
| TTACTGGTCAGCCATCTGAT+AGG | 0.452743 | 4.3:+25461739 | MS.gene47554:CDS |
| TGCTAAAACTGATGAAGAAA+AGG | 0.453582 | 4.3:+25462718 | MS.gene47554:CDS |
| CAACAATATTGCATTGAAGA+AGG | 0.456268 | 4.3:+25463372 | MS.gene47554:CDS |
| GGAAAGAACTTGAAGAACTT+AGG | 0.456756 | 4.3:-25456647 | None:intergenic |
| ATTTCATCACCTAGCTCAAA+AGG | 0.458193 | 4.3:+25461592 | MS.gene47554:CDS |
| TACTCATCTTGATTTGGTTG+AGG | 0.467134 | 4.3:+25456694 | MS.gene47554:CDS |
| TCTGATGTCTCTGCTGAGGC+AGG | 0.468867 | 4.3:+25457082 | MS.gene47554:CDS |
| AATGCCACCAATAGTTTATG+TGG | 0.470729 | 4.3:+25461705 | MS.gene47554:CDS |
| TAATGTTGAAGAGCAAAATT+CGG | 0.475477 | 4.3:+25458348 | MS.gene47554:CDS |
| ATCAAACAGATCATATTCAT+AGG | 0.483162 | 4.3:+25459037 | MS.gene47554:CDS |
| AGCTCTTCCATACGCTCAGC+TGG | 0.487308 | 4.3:-25458762 | None:intergenic |
| TAGTTTCTTGATTGTAGCCC+GGG | 0.492094 | 4.3:-25462657 | None:intergenic |
| GGATGACCTTAGTCGTGAAA+AGG | 0.497612 | 4.3:+25458369 | MS.gene47554:CDS |
| GTTCGTGTGCAAGCGATAAG+AGG | 0.497959 | 4.3:+25456859 | MS.gene47554:CDS |
| TGGTTGAGGCTGATGAACTC+GGG | 0.499099 | 4.3:+25456708 | MS.gene47554:CDS |
| TTCTATTGTTCAGTTGCTGA+AGG | 0.506926 | 4.3:+25459897 | MS.gene47554:CDS |
| GTAACCACATAAACTATTGG+TGG | 0.507469 | 4.3:-25461709 | None:intergenic |
| ACTTTGTTTAAGCACATTCG+TGG | 0.507835 | 4.3:+25458325 | MS.gene47554:CDS |
| GAGCTGCTTGGAATCATTGA+AGG | 0.510702 | 4.3:+25458780 | MS.gene47554:CDS |
| TTGGTTGAGGCTGATGAACT+CGG | 0.515860 | 4.3:+25456707 | MS.gene47554:CDS |
| TTAGTTTCTTGATTGTAGCC+CGG | 0.527233 | 4.3:-25462658 | None:intergenic |
| TGTCGTTCCATTTCCTCTTG+GGG | 0.527654 | 4.3:-25458527 | None:intergenic |
| AAAGGCTCCAGCTGAGCGTA+TGG | 0.527823 | 4.3:+25458755 | MS.gene47554:CDS |
| GAGCGTATGGAAGAGCTGCT+TGG | 0.531459 | 4.3:+25458768 | MS.gene47554:CDS |
| TTTACTTCTGCAGAGCGAAA+CGG | 0.533826 | 4.3:+25463326 | MS.gene47554:intron |
| CAAGAAACTAACTCAAGGAA+TGG | 0.535136 | 4.3:+25462670 | MS.gene47554:CDS |
| AACAATATTGCATTGAAGAA+GGG | 0.536121 | 4.3:+25463373 | MS.gene47554:CDS |
| TCAACAGTTCAGCTTTGATA+GGG | 0.540300 | 4.3:-25458502 | None:intergenic |
| GGTCAGCCATCTGATAGGCT+TGG | 0.540430 | 4.3:+25461744 | MS.gene47554:CDS |
| CGGCCAGCTACTACCGGCAA+TGG | 0.547073 | 4.3:+25463346 | MS.gene47554:CDS |
| CATGGCACTTCCAATTGTTG+TGG | 0.547852 | 4.3:+25459077 | MS.gene47554:CDS |
| CTCTTCCAAAGACAAATCTC+AGG | 0.550702 | 4.3:+25456464 | MS.gene47554:CDS |
| CAGAACGTCAAGGATTATCA+AGG | 0.554085 | 4.3:+25456566 | MS.gene47554:intron |
| GGTGTATCCTTGCAGAAAAG+AGG | 0.555555 | 4.3:-25456886 | None:intergenic |
| GCGAAACGGCCAGCTACTAC+CGG | 0.564093 | 4.3:+25463340 | MS.gene47554:CDS |
| GGAGCGTGATGCTGTGCATA+AGG | 0.570343 | 4.3:+25457058 | MS.gene47554:CDS |
| CTTGTGCAACTTCTTTCCGC+GGG | 0.573193 | 4.3:+25456937 | MS.gene47554:CDS |
| TCTTGTGCAACTTCTTTCCG+CGG | 0.579011 | 4.3:+25456936 | MS.gene47554:CDS |
| ATGTAAGCAGCTTCTTCGGA+AGG | 0.580643 | 4.3:-25456408 | None:intergenic |
| AAAACGTTGAGGAGTTCACC+CGG | 0.582162 | 4.3:+25462639 | MS.gene47554:CDS |
| AAGAAGGGTCGAGGTTCTGG+TGG | 0.585102 | 4.3:+25463388 | MS.gene47554:CDS |
| ATGAGTATTGAGTGCAACAC+CGG | 0.589034 | 4.3:-25456678 | None:intergenic |
| ATTGCATTGAAGAAGGGTCG+AGG | 0.602060 | 4.3:+25463379 | MS.gene47554:CDS |
| GAATCTTGTGGTGTTGTGAA+AGG | 0.604189 | 4.3:-25459859 | None:intergenic |
| ACAATCAAGAAACTAACTCA+AGG | 0.609790 | 4.3:+25462665 | MS.gene47554:CDS |
| CAATTGGAAGTGCCATGTGA+AGG | 0.614103 | 4.3:-25459071 | None:intergenic |
| AAATGAGTAATCACATTGAA+CGG | 0.615862 | 4.3:-25458822 | None:intergenic |
| TGAAAGGTGAAAACTCTGCA+AGG | 0.622969 | 4.3:-25459843 | None:intergenic |
| CTGCTGAGGCAGGATGTGAA+AGG | 0.630646 | 4.3:+25457092 | MS.gene47554:CDS |
| GTTGATATCATGCCTTCACA+TGG | 0.637100 | 4.3:+25459059 | MS.gene47554:CDS |
| AGGCTCTGATGTCTCTGCTG+AGG | 0.641155 | 4.3:+25457078 | MS.gene47554:CDS |
| TCTTCTCCAAGCCTATCAGA+TGG | 0.644984 | 4.3:-25461750 | None:intergenic |
| AGCATTTGTCGTGAATCTTG+TGG | 0.650972 | 4.3:-25459871 | None:intergenic |
| GGTTGAGGCTGATGAACTCG+GGG | 0.657264 | 4.3:+25456709 | MS.gene47554:CDS |
| TGAACTGTTGAAGCCCCAAG+AGG | 0.674998 | 4.3:+25458514 | MS.gene47554:CDS |
| AAACGTTGAGGAGTTCACCC+GGG | 0.696711 | 4.3:+25462640 | MS.gene47554:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 25456396 | 25463434 | 25456396 | ID=MS.gene47554 |
| chr4.3 | mRNA | 25456396 | 25463434 | 25456396 | ID=MS.gene47554.t1;Parent=MS.gene47554 |
| chr4.3 | exon | 25456396 | 25456485 | 25456396 | ID=MS.gene47554.t1.exon1;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25456396 | 25456485 | 25456396 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25456569 | 25456730 | 25456569 | ID=MS.gene47554.t1.exon2;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25456569 | 25456730 | 25456569 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25456859 | 25456958 | 25456859 | ID=MS.gene47554.t1.exon3;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25456859 | 25456958 | 25456859 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25457048 | 25457113 | 25457048 | ID=MS.gene47554.t1.exon4;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25457048 | 25457113 | 25457048 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25458314 | 25458414 | 25458314 | ID=MS.gene47554.t1.exon5;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25458314 | 25458414 | 25458314 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25458497 | 25458571 | 25458497 | ID=MS.gene47554.t1.exon6;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25458497 | 25458571 | 25458497 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25458681 | 25458830 | 25458681 | ID=MS.gene47554.t1.exon7;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25458681 | 25458830 | 25458681 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25459024 | 25459098 | 25459024 | ID=MS.gene47554.t1.exon8;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25459024 | 25459098 | 25459024 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25459183 | 25459248 | 25459183 | ID=MS.gene47554.t1.exon9;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25459183 | 25459248 | 25459183 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25459808 | 25459918 | 25459808 | ID=MS.gene47554.t1.exon10;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25459808 | 25459918 | 25459808 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25461524 | 25461613 | 25461524 | ID=MS.gene47554.t1.exon11;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25461524 | 25461613 | 25461524 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25461699 | 25461805 | 25461699 | ID=MS.gene47554.t1.exon12;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25461699 | 25461805 | 25461699 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25462634 | 25462748 | 25462634 | ID=MS.gene47554.t1.exon13;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25462634 | 25462748 | 25462634 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25462844 | 25462909 | 25462844 | ID=MS.gene47554.t1.exon14;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25462844 | 25462909 | 25462844 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| chr4.3 | exon | 25463339 | 25463434 | 25463339 | ID=MS.gene47554.t1.exon15;Parent=MS.gene47554.t1 |
| chr4.3 | CDS | 25463339 | 25463434 | 25463339 | ID=cds.MS.gene47554.t1;Parent=MS.gene47554.t1 |
| Gene Sequence |
| Protein sequence |
