Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82989.t1 | XP_013466657.1 | 96.1 | 255 | 10 | 0 | 1 | 255 | 50 | 304 | 1.10E-129 | 472.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82989.t1 | Q9ZT92 | 30.9 | 259 | 143 | 5 | 1 | 256 | 51 | 276 | 2.3e-14 | 80.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82989.t1 | A0A072VGX6 | 96.1 | 255 | 10 | 0 | 1 | 255 | 50 | 304 | 8.2e-130 | 472.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene82989 | 0.825483 | 4.57E-54 | -1.69E-46 |
| MS.gene049807 | MS.gene82989 | 0.825197 | 5.34E-54 | -1.69E-46 |
| MS.gene049887 | MS.gene82989 | 0.866624 | 2.49E-65 | -1.69E-46 |
| MS.gene050084 | MS.gene82989 | 0.84444 | 7.55E-59 | -1.69E-46 |
| MS.gene050085 | MS.gene82989 | 0.858861 | 6.16E-63 | -1.69E-46 |
| MS.gene050116 | MS.gene82989 | 0.818874 | 1.56E-52 | -1.69E-46 |
| MS.gene050224 | MS.gene82989 | 0.815295 | 9.94E-52 | -1.69E-46 |
| MS.gene050359 | MS.gene82989 | 0.841237 | 5.37E-58 | -1.69E-46 |
| MS.gene050361 | MS.gene82989 | 0.834615 | 2.71E-56 | -1.69E-46 |
| MS.gene050414 | MS.gene82989 | 0.800042 | 1.73E-48 | -1.69E-46 |
| MS.gene050551 | MS.gene82989 | 0.86911 | 3.96E-66 | -1.69E-46 |
| MS.gene050556 | MS.gene82989 | 0.827304 | 1.68E-54 | -1.69E-46 |
| MS.gene050646 | MS.gene82989 | 0.835546 | 1.58E-56 | -1.69E-46 |
| MS.gene050654 | MS.gene82989 | 0.808448 | 3.08E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene82989 | 0.833302 | 5.77E-56 | -1.69E-46 |
| MS.gene050807 | MS.gene82989 | 0.827669 | 1.38E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene82989 | 0.879267 | 1.43E-69 | -1.69E-46 |
| MS.gene051003 | MS.gene82989 | 0.810475 | 1.13E-50 | -1.69E-46 |
| MS.gene051029 | MS.gene82989 | 0.805998 | 1.02E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene82989 | 0.878676 | 2.32E-69 | -1.69E-46 |
| MS.gene051233 | MS.gene82989 | 0.813056 | 3.10E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene82989 | 0.827952 | 1.18E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene82989 | 0.841482 | 4.63E-58 | -1.69E-46 |
| MS.gene051381 | MS.gene82989 | 0.849363 | 3.39E-60 | -1.69E-46 |
| MS.gene051382 | MS.gene82989 | 0.808371 | 3.20E-50 | -1.69E-46 |
| MS.gene051642 | MS.gene82989 | 0.836134 | 1.12E-56 | -1.69E-46 |
| MS.gene051809 | MS.gene82989 | 0.802665 | 5.04E-49 | -1.69E-46 |
| MS.gene051850 | MS.gene82989 | 0.800259 | 1.57E-48 | -1.69E-46 |
| MS.gene051852 | MS.gene82989 | 0.813397 | 2.61E-51 | -1.69E-46 |
| MS.gene051885 | MS.gene82989 | 0.808969 | 2.39E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene82989 | 0.806173 | 9.35E-50 | -1.69E-46 |
| MS.gene052242 | MS.gene82989 | -0.842855 | 2.00E-58 | -1.69E-46 |
| MS.gene052307 | MS.gene82989 | 0.861365 | 1.08E-63 | -1.69E-46 |
| MS.gene052335 | MS.gene82989 | 0.840396 | 8.92E-58 | -1.69E-46 |
| MS.gene052342 | MS.gene82989 | 0.837793 | 4.22E-57 | -1.69E-46 |
| MS.gene052397 | MS.gene82989 | 0.866666 | 2.41E-65 | -1.69E-46 |
| MS.gene052514 | MS.gene82989 | 0.81715 | 3.83E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene82989 | 0.828642 | 8.02E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene82989 | 0.886412 | 3.50E-72 | -1.69E-46 |
| MS.gene052665 | MS.gene82989 | 0.831097 | 2.02E-55 | -1.69E-46 |
| MS.gene052732 | MS.gene82989 | 0.821626 | 3.65E-53 | -1.69E-46 |
| MS.gene052776 | MS.gene82989 | 0.810107 | 1.36E-50 | -1.69E-46 |
| MS.gene052932 | MS.gene82989 | 0.801277 | 9.71E-49 | -1.69E-46 |
| MS.gene052994 | MS.gene82989 | 0.827684 | 1.37E-54 | -1.69E-46 |
| MS.gene053058 | MS.gene82989 | 0.835145 | 1.99E-56 | -1.69E-46 |
| MS.gene053079 | MS.gene82989 | 0.832377 | 9.79E-56 | -1.69E-46 |
| MS.gene053143 | MS.gene82989 | 0.884306 | 2.15E-71 | -1.69E-46 |
| MS.gene053144 | MS.gene82989 | 0.82291 | 1.84E-53 | -1.69E-46 |
| MS.gene05315 | MS.gene82989 | 0.832343 | 9.98E-56 | -1.69E-46 |
| MS.gene053167 | MS.gene82989 | 0.819542 | 1.10E-52 | -1.69E-46 |
| MS.gene053581 | MS.gene82989 | 0.863851 | 1.85E-64 | -1.69E-46 |
| MS.gene054554 | MS.gene82989 | 0.819937 | 8.93E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene82989 | 0.82268 | 2.08E-53 | -1.69E-46 |
| MS.gene05462 | MS.gene82989 | 0.813037 | 3.14E-51 | -1.69E-46 |
| MS.gene054823 | MS.gene82989 | 0.80546 | 1.32E-49 | -1.69E-46 |
| MS.gene054824 | MS.gene82989 | 0.85294 | 3.32E-61 | -1.69E-46 |
| MS.gene055311 | MS.gene82989 | 0.829374 | 5.34E-55 | -1.69E-46 |
| MS.gene055313 | MS.gene82989 | 0.821601 | 3.70E-53 | -1.69E-46 |
| MS.gene055314 | MS.gene82989 | 0.808205 | 3.47E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene82989 | 0.836227 | 1.06E-56 | -1.69E-46 |
| MS.gene055466 | MS.gene82989 | 0.809226 | 2.10E-50 | -1.69E-46 |
| MS.gene055467 | MS.gene82989 | 0.824045 | 9.99E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene82989 | 0.821803 | 3.32E-53 | -1.69E-46 |
| MS.gene055469 | MS.gene82989 | 0.894968 | 1.50E-75 | -1.69E-46 |
| MS.gene055513 | MS.gene82989 | 0.855445 | 6.28E-62 | -1.69E-46 |
| MS.gene055580 | MS.gene82989 | -0.813684 | 2.26E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene82989 | 0.803734 | 3.03E-49 | -1.69E-46 |
| MS.gene055975 | MS.gene82989 | 0.81406 | 1.87E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene82989 | -0.8252 | 5.34E-54 | -1.69E-46 |
| MS.gene056045 | MS.gene82989 | 0.804925 | 1.71E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene82989 | 0.818095 | 2.34E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene82989 | 0.852835 | 3.56E-61 | -1.69E-46 |
| MS.gene056308 | MS.gene82989 | 0.855392 | 6.51E-62 | -1.69E-46 |
| MS.gene056390 | MS.gene82989 | 0.817604 | 3.03E-52 | -1.69E-46 |
| MS.gene056432 | MS.gene82989 | 0.816902 | 4.35E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene82989 | 0.856496 | 3.09E-62 | -1.69E-46 |
| MS.gene056578 | MS.gene82989 | 0.801142 | 1.03E-48 | -1.69E-46 |
| MS.gene056787 | MS.gene82989 | 0.806695 | 7.26E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene82989 | 0.801861 | 7.37E-49 | -1.69E-46 |
| MS.gene057446 | MS.gene82989 | 0.830717 | 2.51E-55 | -1.69E-46 |
| MS.gene058010 | MS.gene82989 | 0.802543 | 5.34E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene82989 | 0.823302 | 1.49E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene82989 | 0.802691 | 4.97E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene82989 | 0.816838 | 4.50E-52 | -1.69E-46 |
| MS.gene058330 | MS.gene82989 | 0.814465 | 1.52E-51 | -1.69E-46 |
| MS.gene058638 | MS.gene82989 | 0.867031 | 1.85E-65 | -1.69E-46 |
| MS.gene058639 | MS.gene82989 | 0.863728 | 2.02E-64 | -1.69E-46 |
| MS.gene058646 | MS.gene82989 | 0.813402 | 2.61E-51 | -1.69E-46 |
| MS.gene058649 | MS.gene82989 | 0.809846 | 1.55E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene82989 | 0.811794 | 5.86E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene82989 | 0.841035 | 6.07E-58 | -1.69E-46 |
| MS.gene058852 | MS.gene82989 | 0.844466 | 7.43E-59 | -1.69E-46 |
| MS.gene059007 | MS.gene82989 | 0.866171 | 3.47E-65 | -1.69E-46 |
| MS.gene059170 | MS.gene82989 | 0.826997 | 2.00E-54 | -1.69E-46 |
| MS.gene059171 | MS.gene82989 | 0.868793 | 5.01E-66 | -1.69E-46 |
| MS.gene059713 | MS.gene82989 | 0.818324 | 2.08E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene82989 | 0.817994 | 2.47E-52 | -1.69E-46 |
| MS.gene05978 | MS.gene82989 | 0.811743 | 6.01E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene82989 | 0.809779 | 1.60E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene82989 | 0.824994 | 5.97E-54 | -1.69E-46 |
| MS.gene060343 | MS.gene82989 | -0.824178 | 9.29E-54 | -1.69E-46 |
| MS.gene060380 | MS.gene82989 | 0.811513 | 6.74E-51 | -1.69E-46 |
| MS.gene060400 | MS.gene82989 | 0.82908 | 6.29E-55 | -1.69E-46 |
| MS.gene060563 | MS.gene82989 | 0.841321 | 5.10E-58 | -1.69E-46 |
| MS.gene060637 | MS.gene82989 | 0.808163 | 3.54E-50 | -1.69E-46 |
| MS.gene060870 | MS.gene82989 | 0.807729 | 4.38E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene82989 | 0.916009 | 2.98E-85 | -1.69E-46 |
| MS.gene061100 | MS.gene82989 | 0.871239 | 7.95E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82989.t1 | MTR_1g033500 | 96.078 | 255 | 10 | 0 | 1 | 255 | 50 | 304 | 1.54e-179 | 509 |
| MS.gene82989.t1 | MTR_1g033540 | 71.591 | 264 | 65 | 2 | 1 | 255 | 38 | 300 | 1.01e-130 | 384 |
| MS.gene82989.t1 | MTR_7g094250 | 29.961 | 257 | 122 | 7 | 1 | 256 | 33 | 232 | 6.02e-23 | 97.8 |
| MS.gene82989.t1 | MTR_1g089865 | 46.479 | 71 | 38 | 0 | 1 | 71 | 42 | 112 | 2.71e-16 | 77.8 |
| MS.gene82989.t1 | MTR_1g089865 | 48.529 | 68 | 35 | 0 | 1 | 68 | 42 | 109 | 2.93e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82989.t1 | AT1G14710 | 41.948 | 267 | 136 | 5 | 1 | 254 | 33 | 293 | 8.98e-55 | 186 |
| MS.gene82989.t1 | AT1G14710 | 41.948 | 267 | 136 | 5 | 1 | 254 | 33 | 293 | 8.98e-55 | 186 |
| MS.gene82989.t1 | AT4G02940 | 32.046 | 259 | 140 | 6 | 1 | 256 | 51 | 276 | 9.01e-26 | 105 |
| MS.gene82989.t1 | AT2G48080 | 52.239 | 67 | 31 | 1 | 1 | 66 | 27 | 93 | 3.18e-16 | 78.2 |
Find 62 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCATTGGTCAATGATTTA+AGG | 0.182023 | 1.4:+18257905 | MS.gene82989:CDS |
| TTCAGCAGAGGAGGGTTAAT+TGG | 0.239558 | 1.4:+18256084 | MS.gene82989:CDS |
| GTCAGCATTTAGGTGTTATT+GGG | 0.268959 | 1.4:+18256027 | MS.gene82989:CDS |
| TGTCAGCATTTAGGTGTTAT+TGG | 0.294663 | 1.4:+18256026 | MS.gene82989:CDS |
| AGAGAGATGGGTTTATGAAT+TGG | 0.335350 | 1.4:+18255958 | None:intergenic |
| GTCAATGATTTAAGGGTTGC+TGG | 0.346194 | 1.4:+18257913 | MS.gene82989:CDS |
| TTCATTGGTCAATGATTTAA+GGG | 0.347438 | 1.4:+18257906 | MS.gene82989:CDS |
| TGGTGGCAAAGTTGGATATA+AGG | 0.350502 | 1.4:+18256364 | MS.gene82989:CDS |
| GATTGTTTGTGTCAGCATTT+AGG | 0.352627 | 1.4:+18256017 | MS.gene82989:CDS |
| AGTTTCAAAACTTGGTTCAT+TGG | 0.358902 | 1.4:+18257891 | MS.gene82989:CDS |
| GTTTGTGAAGCCGGTTGTTA+AGG | 0.375526 | 1.4:+18256193 | MS.gene82989:CDS |
| CTTCAGGTTAATGTTGTTGA+AGG | 0.394691 | 1.4:+18257832 | MS.gene82989:intron |
| GTTAAATCTGGTGGCAAAGT+TGG | 0.395532 | 1.4:+18256356 | MS.gene82989:CDS |
| TTCCTAAACTCCTTAACAAC+CGG | 0.401772 | 1.4:-18256203 | None:intergenic |
| TGCAGCAGGTGGCGTGGAGG+CGG | 0.410514 | 1.4:+18256162 | MS.gene82989:CDS |
| GCAGCAGAGGTTTGTGAAGC+CGG | 0.415066 | 1.4:+18256184 | MS.gene82989:CDS |
| TTAAGGGTTGCTGGAAGAAA+AGG | 0.425939 | 1.4:+18257922 | MS.gene82989:CDS |
| AGCCGGTTGTTAAGGAGTTT+AGG | 0.431475 | 1.4:+18256201 | MS.gene82989:CDS |
| AGTACTGAAGTTTCAAAACT+TGG | 0.433213 | 1.4:+18257883 | MS.gene82989:CDS |
| GTTAGCAACGAGATGTTTGA+TGG | 0.434124 | 1.4:+18257681 | MS.gene82989:CDS |
| AAGAGTGAAGAAGTTAAATC+TGG | 0.439367 | 1.4:+18256344 | MS.gene82989:CDS |
| TTAAGGAGTTTAGGAAGGGT+AGG | 0.460250 | 1.4:+18256210 | MS.gene82989:CDS |
| CAGAGGTTTGAGGGTGGGAA+TGG | 0.465691 | 1.4:+18256239 | MS.gene82989:CDS |
| ACAGAATGTGCATCAAATTC+TGG | 0.468027 | 1.4:+18257145 | MS.gene82989:CDS |
| TTGGATTCGTAGCGAATTCG+CGG | 0.468773 | 1.4:+18255977 | MS.gene82989:CDS |
| TTAGGTGTTATTGGGGAGAG+TGG | 0.471463 | 1.4:+18256035 | MS.gene82989:CDS |
| TAGGCAATGGCAGAGGTTTG+AGG | 0.474866 | 1.4:+18256229 | MS.gene82989:CDS |
| TGGCGTGGAGGCGGCAGCAG+AGG | 0.475670 | 1.4:+18256171 | MS.gene82989:CDS |
| GGTGAGTATGATCATGTTGT+TGG | 0.481124 | 1.4:+18256056 | MS.gene82989:CDS |
| GAAAATCATCGTCGTGGTGA+AGG | 0.489467 | 1.4:+18256287 | MS.gene82989:CDS |
| GTTTGAGGGTGGGAATGGTA+AGG | 0.499098 | 1.4:+18256244 | MS.gene82989:CDS |
| CGAGATGTTTGATGGGAAGA+TGG | 0.514459 | 1.4:+18257689 | MS.gene82989:CDS |
| AATTTCCAGAGCTCTTCAAA+AGG | 0.517631 | 1.4:-18257102 | None:intergenic |
| GGAAGAAAAGGACAATTTCA+AGG | 0.519573 | 1.4:+18257934 | MS.gene82989:CDS |
| AAGAGCTCTGGAAATTCTCA+AGG | 0.523667 | 1.4:+18257109 | MS.gene82989:CDS |
| GAGGGTGGGAATGGTAAGGA+AGG | 0.523988 | 1.4:+18256248 | MS.gene82989:CDS |
| TGCGTACGCGTTGCAGCAGG+TGG | 0.527248 | 1.4:+18256151 | MS.gene82989:CDS |
| AACGTGAGTGGTTCCACCAC+AGG | 0.529106 | 1.4:+18257648 | MS.gene82989:CDS |
| AGGCAATGGCAGAGGTTTGA+GGG | 0.539109 | 1.4:+18256230 | MS.gene82989:CDS |
| GGTTGCGTACGCGTTGCAGC+AGG | 0.545735 | 1.4:+18256148 | MS.gene82989:CDS |
| TTGGTGCAATTCAGCAGAGG+AGG | 0.562955 | 1.4:+18256075 | MS.gene82989:CDS |
| AAAATCATCGTCGTGGTGAA+GGG | 0.566281 | 1.4:+18256288 | MS.gene82989:CDS |
| GGAAGGGTAGGCAATGGCAG+AGG | 0.566349 | 1.4:+18256222 | MS.gene82989:CDS |
| GGTTGTTAAGGAGTTTAGGA+AGG | 0.567040 | 1.4:+18256205 | MS.gene82989:CDS |
| GACACTGCTGAGGAGAAGAA+AGG | 0.574319 | 1.4:+18256401 | MS.gene82989:CDS |
| TCAGCATTTAGGTGTTATTG+GGG | 0.581125 | 1.4:+18256028 | MS.gene82989:CDS |
| ACGCGTTGCAGCAGGTGGCG+TGG | 0.589277 | 1.4:+18256156 | MS.gene82989:CDS |
| AGTTTAGGAAGGGTAGGCAA+TGG | 0.596438 | 1.4:+18256216 | MS.gene82989:CDS |
| TGGTGCAATTCAGCAGAGGA+GGG | 0.615294 | 1.4:+18256076 | MS.gene82989:CDS |
| TTAGCAACGAGATGTTTGAT+GGG | 0.615854 | 1.4:+18257682 | MS.gene82989:CDS |
| AGTGAAGAAGTTAAATCTGG+TGG | 0.616931 | 1.4:+18256347 | MS.gene82989:CDS |
| AATGGCAGAGGTTTGAGGGT+GGG | 0.618784 | 1.4:+18256234 | MS.gene82989:CDS |
| AGGGTGGGAATGGTAAGGAA+GGG | 0.630717 | 1.4:+18256249 | MS.gene82989:CDS |
| CAATGGCAGAGGTTTGAGGG+TGG | 0.636238 | 1.4:+18256233 | MS.gene82989:CDS |
| GAATGTGCATCAAATTCTGG+AGG | 0.638203 | 1.4:+18257148 | MS.gene82989:CDS |
| GTTGTTAAGGAGTTTAGGAA+GGG | 0.642734 | 1.4:+18256206 | MS.gene82989:CDS |
| CGTTGCAGCAGGTGGCGTGG+AGG | 0.643887 | 1.4:+18256159 | MS.gene82989:CDS |
| AATCAACAACAGAACGTGAG+TGG | 0.649122 | 1.4:+18257636 | MS.gene82989:CDS |
| TTGTTGGTGCAATTCAGCAG+AGG | 0.652480 | 1.4:+18256072 | MS.gene82989:CDS |
| TAAGAATTTAGACACTGCTG+AGG | 0.667493 | 1.4:+18256391 | MS.gene82989:CDS |
| TTAATGTTGTTGAAGGACTG+AGG | 0.691860 | 1.4:+18257839 | MS.gene82989:CDS |
| AGTGTAGAAAATCATCGTCG+TGG | 0.692889 | 1.4:+18256281 | MS.gene82989:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTATATTTTATTTTATG+GGG | + | chr1.4:18257795-18257814 | MS.gene82989:intron | 10.0% |
| !! | GATAGATATTTAAAAAGATT+AGG | - | chr1.4:18257435-18257454 | None:intergenic | 15.0% |
| !! | TAAAAGATATAAGAAAAAGA+AGG | - | chr1.4:18257781-18257800 | None:intergenic | 15.0% |
| !! | TAAGTGTATTTATGAAATTT+GGG | + | chr1.4:18257238-18257257 | MS.gene82989:intron | 15.0% |
| !!! | AATTTATTTTTCATATGATC+TGG | + | chr1.4:18256806-18256825 | MS.gene82989:intron | 15.0% |
| !! | AAAAATGACAAAAAGAAATG+AGG | - | chr1.4:18257743-18257762 | None:intergenic | 20.0% |
| !! | AGTAGATGAAAAATTCAATA+TGG | - | chr1.4:18257040-18257059 | None:intergenic | 20.0% |
| !! | ATAAAAAATCATCAATCTGA+TGG | + | chr1.4:18257079-18257098 | MS.gene82989:CDS | 20.0% |
| !! | CTAAGTGTATTTATGAAATT+TGG | + | chr1.4:18257237-18257256 | MS.gene82989:intron | 20.0% |
| !!! | AATGGTTTTAAATTGCAATT+CGG | + | chr1.4:18256849-18256868 | MS.gene82989:intron | 20.0% |
| !!! | ATAATCAGTTTTATCAATTG+CGG | - | chr1.4:18256727-18256746 | None:intergenic | 20.0% |
| !!! | ATATTGAATTTTTCATCTAC+TGG | + | chr1.4:18257039-18257058 | MS.gene82989:intron | 20.0% |
| ! | AAAAAACAGCAAGTAATGTT+CGG | + | chr1.4:18257343-18257362 | MS.gene82989:intron | 25.0% |
| ! | TTATTCAAATCATAGTCAAC+AGG | - | chr1.4:18257181-18257200 | None:intergenic | 25.0% |
| ! | TTCATTGGTCAATGATTTAA+GGG | + | chr1.4:18257906-18257925 | MS.gene82989:CDS | 25.0% |
| !! | AAAGATTAGGATGTCAATTT+TGG | - | chr1.4:18257422-18257441 | None:intergenic | 25.0% |
| !! | AAGATTAGGATGTCAATTTT+GGG | - | chr1.4:18257421-18257440 | None:intergenic | 25.0% |
| !!! | GAAATGTTACTATTTTTAGC+AGG | - | chr1.4:18256979-18256998 | None:intergenic | 25.0% |
| !!! | TTTTTGTGTTGCAGTTTTAA+TGG | + | chr1.4:18256831-18256850 | MS.gene82989:intron | 25.0% |
| AAACTGATTATACTACACCA+TGG | + | chr1.4:18256736-18256755 | MS.gene82989:intron | 30.0% | |
| AAGAGTGAAGAAGTTAAATC+TGG | + | chr1.4:18256344-18256363 | MS.gene82989:CDS | 30.0% | |
| ACTGTTAAACCACAATGTTA+GGG | + | chr1.4:18256500-18256519 | MS.gene82989:intron | 30.0% | |
| AGTTTCAAAACTTGGTTCAT+TGG | + | chr1.4:18257891-18257910 | MS.gene82989:CDS | 30.0% | |
| CAAACTACATGTATCCTATA+AGG | - | chr1.4:18257529-18257548 | None:intergenic | 30.0% | |
| GTTCATTGGTCAATGATTTA+AGG | + | chr1.4:18257905-18257924 | MS.gene82989:CDS | 30.0% | |
| TAAATACACTTAGCAAAGTC+TGG | - | chr1.4:18257230-18257249 | None:intergenic | 30.0% | |
| TGACAAACACATAAAGATGA+GGG | - | chr1.4:18257383-18257402 | None:intergenic | 30.0% | |
| ! | AAGGGAATTTTGTGGTTAAA+GGG | + | chr1.4:18256306-18256325 | MS.gene82989:CDS | 30.0% |
| ! | AGTACTGAAGTTTCAAAACT+TGG | + | chr1.4:18257883-18257902 | MS.gene82989:CDS | 30.0% |
| ! | TACCCAGTATTTTCAAATAG+CGG | + | chr1.4:18256572-18256591 | MS.gene82989:intron | 30.0% |
| !!! | TCATGATTTTAATTGCAGTC+AGG | - | chr1.4:18256891-18256910 | None:intergenic | 30.0% |
| AATTTCCAGAGCTCTTCAAA+AGG | - | chr1.4:18257105-18257124 | None:intergenic | 35.0% | |
| ACAGAATGTGCATCAAATTC+TGG | + | chr1.4:18257145-18257164 | MS.gene82989:CDS | 35.0% | |
| AGGAGAAGAAAGGTAAATGA+TGG | + | chr1.4:18256411-18256430 | MS.gene82989:intron | 35.0% | |
| AGTGAAGAAGTTAAATCTGG+TGG | + | chr1.4:18256347-18256366 | MS.gene82989:CDS | 35.0% | |
| CATCTTTATGTGTTTGTCAC+AGG | + | chr1.4:18257384-18257403 | MS.gene82989:intron | 35.0% | |
| GACTGTTAAACCACAATGTT+AGG | + | chr1.4:18256499-18256518 | MS.gene82989:intron | 35.0% | |
| GATTGTTTGTGTCAGCATTT+AGG | + | chr1.4:18256017-18256036 | MS.gene82989:CDS | 35.0% | |
| GCGATTGTAGATATAGTCAT+AGG | + | chr1.4:18256475-18256494 | MS.gene82989:intron | 35.0% | |
| GGAAGAAAAGGACAATTTCA+AGG | + | chr1.4:18257934-18257953 | MS.gene82989:CDS | 35.0% | |
| GGAGAAGAAAGGTAAATGAT+GGG | + | chr1.4:18256412-18256431 | MS.gene82989:intron | 35.0% | |
| GTGACAAACACATAAAGATG+AGG | - | chr1.4:18257384-18257403 | None:intergenic | 35.0% | |
| GTTGTTAAGGAGTTTAGGAA+GGG | + | chr1.4:18256206-18256225 | MS.gene82989:CDS | 35.0% | |
| TAAGAATTTAGACACTGCTG+AGG | + | chr1.4:18256391-18256410 | MS.gene82989:CDS | 35.0% | |
| TACTACACCATGGTTAATCT+TGG | + | chr1.4:18256746-18256765 | MS.gene82989:intron | 35.0% | |
| TAGAGATCCAAGATTAACCA+TGG | - | chr1.4:18256756-18256775 | None:intergenic | 35.0% | |
| TTAATGTTGTTGAAGGACTG+AGG | + | chr1.4:18257839-18257858 | MS.gene82989:CDS | 35.0% | |
| TTAGCAACGAGATGTTTGAT+GGG | + | chr1.4:18257682-18257701 | MS.gene82989:CDS | 35.0% | |
| TTCATACACCATGTGCTTAT+AGG | + | chr1.4:18257493-18257512 | MS.gene82989:intron | 35.0% | |
| TTCCTAAACTCCTTAACAAC+CGG | - | chr1.4:18256206-18256225 | None:intergenic | 35.0% | |
| TTGTTCGATTATTTGAGTCG+TGG | + | chr1.4:18256437-18256456 | MS.gene82989:intron | 35.0% | |
| TTTCACTAAATCGCATATCG+CGG | - | chr1.4:18256637-18256656 | None:intergenic | 35.0% | |
| ! | AACAAAAGTTTTTCCTGTGG+TGG | - | chr1.4:18257664-18257683 | None:intergenic | 35.0% |
| ! | CTTCAGGTTAATGTTGTTGA+AGG | + | chr1.4:18257832-18257851 | MS.gene82989:intron | 35.0% |
| ! | GAAGGGAATTTTGTGGTTAA+AGG | + | chr1.4:18256305-18256324 | MS.gene82989:CDS | 35.0% |
| ! | GCTAACAAAAGTTTTTCCTG+TGG | - | chr1.4:18257667-18257686 | None:intergenic | 35.0% |
| ! | GCTTATGCAGCAGTATTTTT+CGG | + | chr1.4:18256118-18256137 | MS.gene82989:CDS | 35.0% |
| ! | TGTCAGCATTTAGGTGTTAT+TGG | + | chr1.4:18256026-18256045 | MS.gene82989:CDS | 35.0% |
| !! | GTACAAGAGTATCAGTATGA+TGG | - | chr1.4:18257580-18257599 | None:intergenic | 35.0% |
| !! | GTCAGCATTTAGGTGTTATT+GGG | + | chr1.4:18256027-18256046 | MS.gene82989:CDS | 35.0% |
| !! | GTGAAAGTGTTGTCAAATAG+CGG | + | chr1.4:18256651-18256670 | MS.gene82989:intron | 35.0% |
| !! | TCAGCATTTAGGTGTTATTG+GGG | + | chr1.4:18256028-18256047 | MS.gene82989:CDS | 35.0% |
| !!! | ACTATTTTTAGCAGGCCAAA+AGG | - | chr1.4:18256971-18256990 | None:intergenic | 35.0% |
| !!! | GGCATCTGTTTTTAATCTTC+AGG | + | chr1.4:18257816-18257835 | MS.gene82989:intron | 35.0% |
| !!! | TGAGTCGTGGTTTTAAATTG+CGG | + | chr1.4:18256450-18256469 | MS.gene82989:intron | 35.0% |
| !!! | TGATTTTAATTGCAGTCAGG+TGG | - | chr1.4:18256888-18256907 | None:intergenic | 35.0% |
| AAAATCATCGTCGTGGTGAA+GGG | + | chr1.4:18256288-18256307 | MS.gene82989:CDS | 40.0% | |
| AATCAACAACAGAACGTGAG+TGG | + | chr1.4:18257636-18257655 | MS.gene82989:CDS | 40.0% | |
| AATCGCATATCGCGGAATAA+CGG | - | chr1.4:18256629-18256648 | None:intergenic | 40.0% | |
| ACTCTCTTCCTATAAGCACA+TGG | - | chr1.4:18257504-18257523 | None:intergenic | 40.0% | |
| AGCAAGTAATGTTCGGACTT+TGG | + | chr1.4:18257350-18257369 | MS.gene82989:intron | 40.0% | |
| AGTGTAGAAAATCATCGTCG+TGG | + | chr1.4:18256281-18256300 | MS.gene82989:CDS | 40.0% | |
| ATGTTTGATGGGAAGATGGT+AGG | + | chr1.4:18257693-18257712 | MS.gene82989:intron | 40.0% | |
| CGCCGCTATTTGAAAATACT+GGG | - | chr1.4:18256577-18256596 | None:intergenic | 40.0% | |
| GAATGTGCATCAAATTCTGG+AGG | + | chr1.4:18257148-18257167 | MS.gene82989:CDS | 40.0% | |
| GGTGAGTATGATCATGTTGT+TGG | + | chr1.4:18256056-18256075 | MS.gene82989:CDS | 40.0% | |
| GGTTGTTAAGGAGTTTAGGA+AGG | + | chr1.4:18256205-18256224 | MS.gene82989:CDS | 40.0% | |
| GTATGAAAGCTAGCAAGCAA+GGG | - | chr1.4:18257480-18257499 | None:intergenic | 40.0% | |
| GTCAATGATTTAAGGGTTGC+TGG | + | chr1.4:18257913-18257932 | MS.gene82989:CDS | 40.0% | |
| GTTAAATCTGGTGGCAAAGT+TGG | + | chr1.4:18256356-18256375 | MS.gene82989:CDS | 40.0% | |
| GTTAGCAACGAGATGTTTGA+TGG | + | chr1.4:18257681-18257700 | MS.gene82989:CDS | 40.0% | |
| TAGGAAGAGAGTCACCTTAT+AGG | + | chr1.4:18257512-18257531 | MS.gene82989:intron | 40.0% | |
| TGGTGGCAAAGTTGGATATA+AGG | + | chr1.4:18256364-18256383 | MS.gene82989:CDS | 40.0% | |
| TGTATGAAAGCTAGCAAGCA+AGG | - | chr1.4:18257481-18257500 | None:intergenic | 40.0% | |
| TGTTGTCAAATAGCGGCTAT+AGG | + | chr1.4:18256658-18256677 | MS.gene82989:intron | 40.0% | |
| TTAAGGAGTTTAGGAAGGGT+AGG | + | chr1.4:18256210-18256229 | MS.gene82989:CDS | 40.0% | |
| TTAAGGGTTGCTGGAAGAAA+AGG | + | chr1.4:18257922-18257941 | MS.gene82989:CDS | 40.0% | |
| !! | AAGAGCTCTGGAAATTCTCA+AGG | + | chr1.4:18257109-18257128 | MS.gene82989:CDS | 40.0% |
| !! | ATGTAGTTTGCTGTGAAGAC+TGG | + | chr1.4:18257539-18257558 | MS.gene82989:intron | 40.0% |
| !! | GCAGTATTTTTCGGTTAACG+AGG | + | chr1.4:18256127-18256146 | MS.gene82989:CDS | 40.0% |
| !! | TTTTTAGCAGGCCAAAAGGT+CGG | - | chr1.4:18256967-18256986 | None:intergenic | 40.0% |
| ACTGTGTGACCCTAACATTG+TGG | - | chr1.4:18256512-18256531 | None:intergenic | 45.0% | |
| AGCCGGTTGTTAAGGAGTTT+AGG | + | chr1.4:18256201-18256220 | MS.gene82989:CDS | 45.0% | |
| AGTTTAGGAAGGGTAGGCAA+TGG | + | chr1.4:18256216-18256235 | MS.gene82989:CDS | 45.0% | |
| CGAGATGTTTGATGGGAAGA+TGG | + | chr1.4:18257689-18257708 | MS.gene82989:CDS | 45.0% | |
| GAAAATCATCGTCGTGGTGA+AGG | + | chr1.4:18256287-18256306 | MS.gene82989:CDS | 45.0% | |
| GCGCCGCTATTTGAAAATAC+TGG | - | chr1.4:18256578-18256597 | None:intergenic | 45.0% | |
| GGCTATAGGCTGTGAAATTG+CGG | + | chr1.4:18256672-18256691 | MS.gene82989:intron | 45.0% | |
| GTTTGTGAAGCCGGTTGTTA+AGG | + | chr1.4:18256193-18256212 | MS.gene82989:CDS | 45.0% | |
| TGCAATTCGGAGACCATTGT+AGG | + | chr1.4:18256862-18256881 | MS.gene82989:intron | 45.0% | |
| TTCAGCAGAGGAGGGTTAAT+TGG | + | chr1.4:18256084-18256103 | MS.gene82989:CDS | 45.0% | |
| TTGGATTCGTAGCGAATTCG+CGG | + | chr1.4:18255977-18255996 | MS.gene82989:CDS | 45.0% | |
| TTGTTGGTGCAATTCAGCAG+AGG | + | chr1.4:18256072-18256091 | MS.gene82989:CDS | 45.0% | |
| ! | ATACACGACTTCCGACCTTT+TGG | + | chr1.4:18256953-18256972 | MS.gene82989:intron | 45.0% |
| ! | TCGTGGTGAAGGGAATTTTG+TGG | + | chr1.4:18256298-18256317 | MS.gene82989:CDS | 45.0% |
| !! | TTAGGTGTTATTGGGGAGAG+TGG | + | chr1.4:18256035-18256054 | MS.gene82989:CDS | 45.0% |
| !!! | ATCTTTTATATTTTATTTTA+TGG | + | chr1.4:18257793-18257812 | MS.gene82989:intron | 5.0% |
| !!! | TCTTTTATATTTTATTTTAT+GGG | + | chr1.4:18257794-18257813 | MS.gene82989:intron | 5.0% |
| AATGGCAGAGGTTTGAGGGT+GGG | + | chr1.4:18256234-18256253 | MS.gene82989:CDS | 50.0% | |
| AGGCAATGGCAGAGGTTTGA+GGG | + | chr1.4:18256230-18256249 | MS.gene82989:CDS | 50.0% | |
| AGGGTGGGAATGGTAAGGAA+GGG | + | chr1.4:18256249-18256268 | MS.gene82989:CDS | 50.0% | |
| GACACTGCTGAGGAGAAGAA+AGG | + | chr1.4:18256401-18256420 | MS.gene82989:CDS | 50.0% | |
| GTTTGAGGGTGGGAATGGTA+AGG | + | chr1.4:18256244-18256263 | MS.gene82989:CDS | 50.0% | |
| TAGGCAATGGCAGAGGTTTG+AGG | + | chr1.4:18256229-18256248 | MS.gene82989:CDS | 50.0% | |
| TGGTGCAATTCAGCAGAGGA+GGG | + | chr1.4:18256076-18256095 | MS.gene82989:CDS | 50.0% | |
| TTGGTGCAATTCAGCAGAGG+AGG | + | chr1.4:18256075-18256094 | MS.gene82989:CDS | 50.0% | |
| !! | GATGGCCTTTTGAAGAGCTC+TGG | + | chr1.4:18257097-18257116 | MS.gene82989:CDS | 50.0% |
| AACGTGAGTGGTTCCACCAC+AGG | + | chr1.4:18257648-18257667 | MS.gene82989:CDS | 55.0% | |
| CAATGGCAGAGGTTTGAGGG+TGG | + | chr1.4:18256233-18256252 | MS.gene82989:CDS | 55.0% | |
| CAGAGGTTTGAGGGTGGGAA+TGG | + | chr1.4:18256239-18256258 | MS.gene82989:CDS | 55.0% | |
| GAGGGTGGGAATGGTAAGGA+AGG | + | chr1.4:18256248-18256267 | MS.gene82989:CDS | 55.0% | |
| GCAGCAGAGGTTTGTGAAGC+CGG | + | chr1.4:18256184-18256203 | MS.gene82989:CDS | 55.0% | |
| TGCAGTCAGGTGGCCTACAA+TGG | - | chr1.4:18256878-18256897 | None:intergenic | 55.0% | |
| GGAAGGGTAGGCAATGGCAG+AGG | + | chr1.4:18256222-18256241 | MS.gene82989:CDS | 60.0% | |
| GGTTGCGTACGCGTTGCAGC+AGG | + | chr1.4:18256148-18256167 | MS.gene82989:CDS | 65.0% | |
| TGCGTACGCGTTGCAGCAGG+TGG | + | chr1.4:18256151-18256170 | MS.gene82989:CDS | 65.0% | |
| ACGCGTTGCAGCAGGTGGCG+TGG | + | chr1.4:18256156-18256175 | MS.gene82989:CDS | 70.0% | |
| CGTTGCAGCAGGTGGCGTGG+AGG | + | chr1.4:18256159-18256178 | MS.gene82989:CDS | 70.0% | |
| TGCAGCAGGTGGCGTGGAGG+CGG | + | chr1.4:18256162-18256181 | MS.gene82989:CDS | 70.0% | |
| TGGCGTGGAGGCGGCAGCAG+AGG | + | chr1.4:18256171-18256190 | MS.gene82989:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 18255972 | 18257963 | 18255972 | ID=MS.gene82989 |
| chr1.4 | mRNA | 18255972 | 18257963 | 18255972 | ID=MS.gene82989.t1;Parent=MS.gene82989 |
| chr1.4 | exon | 18255972 | 18256422 | 18255972 | ID=MS.gene82989.t1.exon1;Parent=MS.gene82989.t1 |
| chr1.4 | CDS | 18255972 | 18256422 | 18255972 | ID=cds.MS.gene82989.t1;Parent=MS.gene82989.t1 |
| chr1.4 | exon | 18257074 | 18257169 | 18257074 | ID=MS.gene82989.t1.exon2;Parent=MS.gene82989.t1 |
| chr1.4 | CDS | 18257074 | 18257169 | 18257074 | ID=cds.MS.gene82989.t1;Parent=MS.gene82989.t1 |
| chr1.4 | exon | 18257613 | 18257710 | 18257613 | ID=MS.gene82989.t1.exon3;Parent=MS.gene82989.t1 |
| chr1.4 | CDS | 18257613 | 18257710 | 18257613 | ID=cds.MS.gene82989.t1;Parent=MS.gene82989.t1 |
| chr1.4 | exon | 18257838 | 18257963 | 18257838 | ID=MS.gene82989.t1.exon4;Parent=MS.gene82989.t1 |
| chr1.4 | CDS | 18257838 | 18257963 | 18257838 | ID=cds.MS.gene82989.t1;Parent=MS.gene82989.t1 |
| Gene Sequence |
| Protein sequence |
