AlfalfaGEDB | MS.gene29047

M. sativa cultivar XinJiangDaYe / MS.gene29047

KEGG: -
GO: -
PFAM: PF07800.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29047.t1	XP_003601118.1	97.7	307	7	0	1	307	7	313	1.90E-171	611.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29047.t1	G7J3N5	97.7	307	7	0	1	307	7	313	1.4e-171	611.7

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene29047	0.804276	2.34E-49	-1.69E-46
MS.gene049166	MS.gene29047	0.823359	1.45E-53	-1.69E-46
MS.gene04917	MS.gene29047	0.805576	1.25E-49	-1.69E-46
MS.gene049283	MS.gene29047	0.823401	1.41E-53	-1.69E-46
MS.gene049674	MS.gene29047	0.813706	2.24E-51	-1.69E-46
MS.gene049861	MS.gene29047	0.802898	4.51E-49	-1.69E-46
MS.gene050084	MS.gene29047	0.854982	8.56E-62	-1.69E-46
MS.gene050085	MS.gene29047	0.867839	1.02E-65	-1.69E-46
MS.gene050114	MS.gene29047	0.848841	4.74E-60	-1.69E-46
MS.gene050116	MS.gene29047	0.821505	3.90E-53	-1.69E-46
MS.gene050317	MS.gene29047	0.829257	5.69E-55	-1.69E-46
MS.gene050359	MS.gene29047	0.879487	1.20E-69	-1.69E-46
MS.gene050384	MS.gene29047	0.808796	2.60E-50	-1.69E-46
MS.gene050386	MS.gene29047	0.834487	2.91E-56	-1.69E-46
MS.gene050646	MS.gene29047	0.818517	1.88E-52	-1.69E-46
MS.gene050654	MS.gene29047	0.836693	8.06E-57	-1.69E-46
MS.gene050752	MS.gene29047	0.802483	5.49E-49	-1.69E-46
MS.gene050838	MS.gene29047	0.833847	4.21E-56	-1.69E-46
MS.gene050945	MS.gene29047	0.806044	9.96E-50	-1.69E-46
MS.gene051003	MS.gene29047	0.849854	2.48E-60	-1.69E-46
MS.gene051184	MS.gene29047	0.83633	9.97E-57	-1.69E-46
MS.gene051233	MS.gene29047	0.811061	8.45E-51	-1.69E-46
MS.gene051343	MS.gene29047	0.864566	1.11E-64	-1.69E-46
MS.gene051381	MS.gene29047	0.822993	1.76E-53	-1.69E-46
MS.gene051809	MS.gene29047	0.817296	3.55E-52	-1.69E-46
MS.gene051831	MS.gene29047	0.819278	1.26E-52	-1.69E-46
MS.gene051975	MS.gene29047	0.815435	9.26E-52	-1.69E-46
MS.gene051987	MS.gene29047	0.809529	1.81E-50	-1.69E-46
MS.gene052242	MS.gene29047	-0.865956	4.05E-65	-1.69E-46
MS.gene052342	MS.gene29047	0.817402	3.36E-52	-1.69E-46
MS.gene052434	MS.gene29047	0.83228	1.03E-55	-1.69E-46
MS.gene052609	MS.gene29047	0.807927	3.98E-50	-1.69E-46
MS.gene052932	MS.gene29047	0.817715	2.86E-52	-1.69E-46
MS.gene053058	MS.gene29047	0.891788	2.89E-74	-1.69E-46
MS.gene053167	MS.gene29047	0.839689	1.36E-57	-1.69E-46
MS.gene053564	MS.gene29047	0.840945	6.40E-58	-1.69E-46
MS.gene053575	MS.gene29047	0.803932	2.75E-49	-1.69E-46
MS.gene053726	MS.gene29047	0.810269	1.25E-50	-1.69E-46
MS.gene054558	MS.gene29047	0.801818	7.52E-49	-1.69E-46
MS.gene055311	MS.gene29047	0.831036	2.10E-55	-1.69E-46
MS.gene055424	MS.gene29047	0.802272	6.07E-49	-1.69E-46
MS.gene055513	MS.gene29047	0.802506	5.43E-49	-1.69E-46
MS.gene056045	MS.gene29047	0.818171	2.25E-52	-1.69E-46
MS.gene056097	MS.gene29047	0.888669	4.81E-73	-1.69E-46
MS.gene05615	MS.gene29047	0.810852	9.38E-51	-1.69E-46
MS.gene056181	MS.gene29047	0.858507	7.86E-63	-1.69E-46
MS.gene056787	MS.gene29047	0.862197	6.01E-64	-1.69E-46
MS.gene056849	MS.gene29047	0.866248	3.28E-65	-1.69E-46
MS.gene056975	MS.gene29047	0.811294	7.52E-51	-1.69E-46
MS.gene056986	MS.gene29047	0.816707	4.81E-52	-1.69E-46
MS.gene056992	MS.gene29047	0.852781	3.69E-61	-1.69E-46
MS.gene057094	MS.gene29047	0.806167	9.38E-50	-1.69E-46
MS.gene057234	MS.gene29047	0.81051	1.11E-50	-1.69E-46
MS.gene057451	MS.gene29047	-0.814055	1.87E-51	-1.69E-46
MS.gene057452	MS.gene29047	-0.842996	1.84E-58	-1.69E-46
MS.gene057622	MS.gene29047	0.800585	1.34E-48	-1.69E-46
MS.gene05781	MS.gene29047	0.845827	3.18E-59	-1.69E-46
MS.gene057890	MS.gene29047	-0.801137	1.04E-48	-1.69E-46
MS.gene057999	MS.gene29047	0.830266	3.24E-55	-1.69E-46
MS.gene058054	MS.gene29047	0.86183	7.79E-64	-1.69E-46
MS.gene058055	MS.gene29047	0.82797	1.17E-54	-1.69E-46
MS.gene058074	MS.gene29047	0.80096	1.13E-48	-1.69E-46
MS.gene058126	MS.gene29047	0.805857	1.09E-49	-1.69E-46
MS.gene058238	MS.gene29047	0.810141	1.34E-50	-1.69E-46
MS.gene058638	MS.gene29047	0.82567	4.13E-54	-1.69E-46
MS.gene058639	MS.gene29047	0.825048	5.80E-54	-1.69E-46
MS.gene058654	MS.gene29047	0.803394	3.56E-49	-1.69E-46
MS.gene058758	MS.gene29047	0.839568	1.47E-57	-1.69E-46
MS.gene05880	MS.gene29047	0.806652	7.41E-50	-1.69E-46
MS.gene059007	MS.gene29047	0.883267	5.19E-71	-1.69E-46
MS.gene059146	MS.gene29047	0.842098	3.18E-58	-1.69E-46
MS.gene059171	MS.gene29047	0.801562	8.49E-49	-1.69E-46
MS.gene059360	MS.gene29047	0.824143	9.47E-54	-1.69E-46
MS.gene059965	MS.gene29047	0.806397	8.39E-50	-1.69E-46
MS.gene06010	MS.gene29047	0.820231	7.65E-53	-1.69E-46
MS.gene06011	MS.gene29047	0.805749	1.15E-49	-1.69E-46
MS.gene060296	MS.gene29047	0.820046	8.43E-53	-1.69E-46
MS.gene060297	MS.gene29047	0.808564	2.91E-50	-1.69E-46
MS.gene060563	MS.gene29047	0.866666	2.41E-65	-1.69E-46
MS.gene060869	MS.gene29047	0.807448	5.03E-50	-1.69E-46
MS.gene060870	MS.gene29047	0.81027	1.25E-50	-1.69E-46
MS.gene060933	MS.gene29047	0.801231	9.93E-49	-1.69E-46
MS.gene061006	MS.gene29047	0.815387	9.49E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29047.t1	MTR_3g073240	97.720	307	7	0	1	307	7	313	0.0	625
MS.gene29047.t1	MTR_4g094420	54.878	246	97	5	2	239	8	247	1.84e-85	261
MS.gene29047.t1	MTR_7g059110	43.750	224	83	2	42	224	24	245	2.31e-58	191
MS.gene29047.t1	MTR_4g113730	38.696	230	100	2	37	226	43	271	7.17e-49	166
MS.gene29047.t1	MTR_1g009790	40.000	205	117	2	17	221	1	199	3.57e-48	163
MS.gene29047.t1	MTR_1g009790	40.000	205	117	2	17	221	1	199	9.80e-48	162
MS.gene29047.t1	MTR_8g085870	42.188	192	103	1	30	213	34	225	1.92e-47	164
MS.gene29047.t1	MTR_7g059110	57.522	113	48	0	112	224	170	282	4.63e-38	139
MS.gene29047.t1	MTR_7g059110	46.591	88	41	2	42	123	24	111	8.13e-16	77.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29047.t1	AT4G08460	62.051	195	52	2	28	222	33	205	2.60e-83	253
MS.gene29047.t1	AT4G08460	62.051	195	52	2	28	222	33	205	2.60e-83	253
MS.gene29047.t1	AT4G08460	62.051	195	52	2	28	222	33	205	2.60e-83	253
MS.gene29047.t1	AT4G08460	62.051	195	52	2	28	222	33	205	2.60e-83	253
MS.gene29047.t1	AT1G77770	53.125	224	66	3	4	227	6	190	2.12e-74	229
MS.gene29047.t1	AT1G77770	53.125	224	66	3	4	227	6	190	2.31e-74	229
MS.gene29047.t1	AT1G77770	53.125	224	66	3	4	227	6	190	2.31e-74	229
MS.gene29047.t1	AT1G68140	54.639	194	73	2	31	224	42	220	5.12e-72	225
MS.gene29047.t1	AT1G68140	42.561	289	127	6	31	295	42	315	2.15e-68	216
MS.gene29047.t1	AT1G68140	42.561	289	127	6	31	295	42	315	2.15e-68	216
MS.gene29047.t1	AT1G68140	42.561	289	127	6	31	295	42	315	2.15e-68	216
MS.gene29047.t1	AT3G24740	40.359	223	99	3	37	225	19	241	1.83e-53	179
MS.gene29047.t1	AT3G24740	40.359	223	99	3	37	225	19	241	1.83e-53	179
MS.gene29047.t1	AT3G24740	40.359	223	99	3	37	225	19	241	1.83e-53	179
MS.gene29047.t1	AT3G24740	40.359	223	99	3	37	225	19	241	1.83e-53	179
MS.gene29047.t1	AT3G24740	40.359	223	99	3	37	225	19	241	1.83e-53	179
MS.gene29047.t1	AT3G24740	40.359	223	99	3	37	225	19	241	1.83e-53	179
MS.gene29047.t1	AT4G31410	40.092	217	108	5	38	251	28	225	7.17e-47	160
MS.gene29047.t1	AT4G31410	40.092	217	108	5	38	251	28	225	7.17e-47	160
MS.gene29047.t1	AT4G31410	40.092	217	108	5	38	251	28	225	7.17e-47	160
MS.gene29047.t1	AT3G25910	36.325	234	96	2	37	217	36	269	2.44e-43	152
MS.gene29047.t1	AT1G80220	31.439	264	145	6	13	275	18	246	4.50e-35	128
MS.gene29047.t1	AT1G15430	35.204	196	99	3	13	204	18	189	5.13e-35	128
MS.gene29047.t1	AT1G15430	35.204	196	99	3	13	204	18	189	5.13e-35	128
MS.gene29047.t1	AT2G26050	32.624	141	70	2	64	203	38	154	3.22e-20	87.8

Find 77 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAGGTTCTGCTGCTCTTTC+TGG	0.086227	3.4:-72078518	MS.gene29047:CDS
ACTGATTCTGATGATGAATT+TGG	0.163731	3.4:-72078656	MS.gene29047:CDS
CTATGCCTCCGTCGTCTTCT+AGG	0.214329	3.4:+72078464	None:intergenic
AACTCCAGGGGCTATGGTAC+TGG	0.215833	3.4:-72078726	MS.gene29047:CDS
CGGCTAGTAGCACACATATA+AGG	0.248105	3.4:+72079148	None:intergenic
CTAGCACAAGATAAAAGATA+TGG	0.288835	3.4:+72079310	None:intergenic
TCTTGCCATTCAGAGACTTC+CGG	0.294090	3.4:+72078930	None:intergenic
TTCTTCGGCTCCATTGGTTT+GGG	0.298539	3.4:-72078617	MS.gene29047:CDS
CTTGCCATTCAGAGACTTCC+GGG	0.300913	3.4:+72078931	None:intergenic
TTTCTTCGGCTCCATTGGTT+TGG	0.320053	3.4:-72078618	MS.gene29047:CDS
CTGATTCTGATGATGAATTT+GGG	0.329708	3.4:-72078655	MS.gene29047:CDS
TTTCCTTGTGACCTCGAGAT+TGG	0.332101	3.4:+72079335	None:intergenic
GTGGTACTGGCAGCTTTATC+AGG	0.366519	3.4:-72078595	MS.gene29047:CDS
CTTTCACCTGTCGGCGGCAA+AGG	0.373229	3.4:+72078975	None:intergenic
TCCATTGGTTTGGGTGGTAC+TGG	0.373732	3.4:-72078608	MS.gene29047:CDS
TTCCTTGTGACCTCGAGATT+GGG	0.384905	3.4:+72079336	None:intergenic
CTGTATAATCCACGGTCATT+TGG	0.390948	3.4:+72078686	None:intergenic
GTCTTCAACTCCAGGGGCTA+TGG	0.399273	3.4:-72078732	MS.gene29047:CDS
GGTGATTTCTTCGGCTCCAT+TGG	0.401886	3.4:-72078623	MS.gene29047:CDS
GGCTAGTAGCACACATATAA+GGG	0.411650	3.4:+72079149	None:intergenic
TTTCGGAGTGTTGCATCTAC+AGG	0.416952	3.4:-72078536	MS.gene29047:CDS
TAGCACAAGATAAAAGATAT+GGG	0.419897	3.4:+72079311	None:intergenic
TTTCACCTGTCGGCGGCAAA+GGG	0.426605	3.4:+72078976	None:intergenic
GAGGATGATGGTGATTTCTT+CGG	0.432897	3.4:-72078632	MS.gene29047:CDS
TTGTCCCCTTTGCCGCCGAC+AGG	0.433551	3.4:-72078981	MS.gene29047:CDS
ACTCCAGGGGCTATGGTACT+GGG	0.435014	3.4:-72078725	MS.gene29047:CDS
TGCTACCTGCTCAGTCTGTA+TGG	0.441789	3.4:-72079227	MS.gene29047:CDS
CGGGGAGTTACAAGGAGCTT+AGG	0.444681	3.4:-72078874	MS.gene29047:CDS
CCAAAGTCATCGACATCAAA+AGG	0.453118	3.4:+72078560	None:intergenic
ACTTCTCGTGGTCGCGAACA+TGG	0.461952	3.4:+72078830	None:intergenic
GAGGAGTAGGATAGCATTGT+GGG	0.468661	3.4:+72079198	None:intergenic
AAGCGGTAGAAAAGAAAGAT+TGG	0.472915	3.4:-72079255	MS.gene29047:CDS
CAAAGGGGACAAAGAAGCTC+AGG	0.485626	3.4:+72078992	None:intergenic
TCTGCTGCTCTTTCTGGACG+TGG	0.489978	3.4:-72078512	MS.gene29047:CDS
CTAGAAGACGACGGAGGCAT+AGG	0.517476	3.4:-72078463	MS.gene29047:CDS
CTTTGCCGCCGACAGGTGAA+AGG	0.519049	3.4:-72078974	MS.gene29047:CDS
ATGTTCGCGACCACGAGAAG+TGG	0.522683	3.4:-72078828	MS.gene29047:CDS
TTCGGCTCCATTGGTTTGGG+TGG	0.524118	3.4:-72078614	MS.gene29047:CDS
AGGCATAGGGTACTGAATGC+TGG	0.551130	3.4:-72078449	MS.gene29047:CDS
CCTCTGTTCATCGTATAACA+AGG	0.553685	3.4:-72079179	MS.gene29047:CDS
TTTCTGGACGTGGATTCCAC+AGG	0.555472	3.4:-72078502	MS.gene29047:CDS
GTCCCAATCTCGAGGTCACA+AGG	0.563412	3.4:-72079338	MS.gene29047:CDS
TAGAAGACGACGGAGGCATA+GGG	0.563527	3.4:-72078462	MS.gene29047:CDS
GGACTGTGGTTGAAGCAGCC+CGG	0.563979	3.4:-72078949	MS.gene29047:CDS
GATGAATTTGGGGAGGATGA+TGG	0.566776	3.4:-72078644	MS.gene29047:CDS
AATTCGAGTGTGAAAGAGAA+CGG	0.568336	3.4:-72078778	MS.gene29047:CDS
GCCGCCGACAGGTGAAAGGT+TGG	0.568951	3.4:-72078970	MS.gene29047:CDS
GCCAGTACCACCCAAACCAA+TGG	0.572874	3.4:+72078607	None:intergenic
CTCCAGGGGCTATGGTACTG+GGG	0.573301	3.4:-72078724	MS.gene29047:CDS
TGGATTCCACAGGATACTGT+TGG	0.574386	3.4:-72078492	MS.gene29047:CDS
GTCTTTCCAACAGTATCCTG+TGG	0.591460	3.4:+72078486	None:intergenic
AGAGGAGTAGGATAGCATTG+TGG	0.593867	3.4:+72079197	None:intergenic
CAGTCCAACCTTTCACCTGT+CGG	0.596695	3.4:+72078966	None:intergenic
AACCTCCATACAGACTGAGC+AGG	0.601071	3.4:+72079222	None:intergenic
GCAGCCCGGAAGTCTCTGAA+TGG	0.601426	3.4:-72078935	MS.gene29047:CDS
AAAAGAAGCTGTATGCAAGA+TGG	0.602513	3.4:-72078908	MS.gene29047:CDS
TATACGATGAACAGAGGAGT+AGG	0.603641	3.4:+72079185	None:intergenic
TCCAGGGGCTATGGTACTGG+GGG	0.607557	3.4:-72078723	MS.gene29047:CDS
ATAGGGTACTGAATGCTGGC+CGG	0.616066	3.4:-72078445	MS.gene29047:CDS
AGCACAAGATAAAAGATATG+GGG	0.621741	3.4:+72079312	None:intergenic
CAAAACAGTTAGAATAGCGA+CGG	0.627893	3.4:+72079128	None:intergenic
TCCAACCTTTCACCTGTCGG+CGG	0.644382	3.4:+72078969	None:intergenic
TGATTCTGATGATGAATTTG+GGG	0.645133	3.4:-72078654	MS.gene29047:CDS
TACCTGCTCAGTCTGTATGG+AGG	0.645194	3.4:-72079224	MS.gene29047:CDS
CTCTGTTCATCGTATAACAA+GGG	0.645683	3.4:-72079178	MS.gene29047:CDS
CGTACAGGGTCCACTTCTCG+TGG	0.645791	3.4:+72078818	None:intergenic
TTCACCTGTCGGCGGCAAAG+GGG	0.648214	3.4:+72078977	None:intergenic
TTCTGATGATGAATTTGGGG+AGG	0.654732	3.4:-72078651	MS.gene29047:CDS
TTTCGTCGCTGTATAATCCA+CGG	0.656197	3.4:+72078678	None:intergenic
CGGTGCAAGTCCCAATCTCG+AGG	0.662801	3.4:-72079346	MS.gene29047:CDS
GTAGAAAAGAAAGATTGGAA+AGG	0.684023	3.4:-72079250	MS.gene29047:CDS
GTGCTCGAGCCAAATGACCG+TGG	0.685398	3.4:-72078695	MS.gene29047:CDS
CCTTGTTATACGATGAACAG+AGG	0.702851	3.4:+72079179	None:intergenic
TGGAAAGACCTAGAAGACGA+CGG	0.711922	3.4:-72078472	MS.gene29047:CDS
AGGAGTAGGATAGCATTGTG+GGG	0.724984	3.4:+72079199	None:intergenic
ACAGGTGAAAGGTTGGACTG+TGG	0.742392	3.4:-72078963	MS.gene29047:CDS
AAAGACCTAGAAGACGACGG+AGG	0.779006	3.4:-72078469	MS.gene29047:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATATGAAAAATGTCAAG+AGG	-	chr3.4:72078506-72078525	MS.gene29047:CDS	20.0%
!	TAGCACAAGATAAAAGATAT+GGG	+	chr3.4:72078483-72078502	None:intergenic	25.0%
!!!	CTGTTTTGAACAGTATAAAA+AGG	-	chr3.4:72078678-72078697	MS.gene29047:CDS	25.0%
!!!	TCGAATTTTGATTCTAATTC+TGG	-	chr3.4:72078751-72078770	MS.gene29047:CDS	25.0%
	AGCACAAGATAAAAGATATG+GGG	+	chr3.4:72078482-72078501	None:intergenic	30.0%
	CTAGCACAAGATAAAAGATA+TGG	+	chr3.4:72078484-72078503	None:intergenic	30.0%
	GTAGAAAAGAAAGATTGGAA+AGG	-	chr3.4:72078541-72078560	MS.gene29047:CDS	30.0%
!	ACTGATTCTGATGATGAATT+TGG	-	chr3.4:72079135-72079154	MS.gene29047:CDS	30.0%
!	CTGATTCTGATGATGAATTT+GGG	-	chr3.4:72079136-72079155	MS.gene29047:CDS	30.0%
!	TGATTCTGATGATGAATTTG+GGG	-	chr3.4:72079137-72079156	MS.gene29047:CDS	30.0%
	AAAAGAAGCTGTATGCAAGA+TGG	-	chr3.4:72078883-72078902	MS.gene29047:CDS	35.0%
	AAGCGGTAGAAAAGAAAGAT+TGG	-	chr3.4:72078536-72078555	MS.gene29047:CDS	35.0%
	AATTCGAGTGTGAAAGAGAA+CGG	-	chr3.4:72079013-72079032	MS.gene29047:CDS	35.0%
	CAAAACAGTTAGAATAGCGA+CGG	+	chr3.4:72078666-72078685	None:intergenic	35.0%
	CTCTGTTCATCGTATAACAA+GGG	-	chr3.4:72078613-72078632	MS.gene29047:CDS	35.0%
!	AATTTTGTCTTCAACTCCAG+GGG	-	chr3.4:72079053-72079072	MS.gene29047:CDS	35.0%
!	ACAATTTTGTCTTCAACTCC+AGG	-	chr3.4:72079051-72079070	MS.gene29047:CDS	35.0%
!	CAATTTTGTCTTCAACTCCA+GGG	-	chr3.4:72079052-72079071	MS.gene29047:CDS	35.0%
!!	TCCATTTTTCTTCTCGTACA+GGG	+	chr3.4:72078990-72079009	None:intergenic	35.0%
!!	TGTCAAGAGGTTTTCTAAAG+CGG	-	chr3.4:72078519-72078538	MS.gene29047:CDS	35.0%
!!	TTCCATTTTTCTTCTCGTAC+AGG	+	chr3.4:72078991-72079010	None:intergenic	35.0%
!!!	ATGTCGATGACTTTGGTTTT+CGG	-	chr3.4:72079238-72079257	MS.gene29047:CDS	35.0%
	ACCCTGTACGAGAAGAAAAA+TGG	-	chr3.4:72078986-72079005	MS.gene29047:CDS	40.0%
	CCAAAGTCATCGACATCAAA+AGG	+	chr3.4:72079234-72079253	None:intergenic	40.0%
	CCTCTGTTCATCGTATAACA+AGG	-	chr3.4:72078612-72078631	MS.gene29047:CDS	40.0%
	CTGTATAATCCACGGTCATT+TGG	+	chr3.4:72079108-72079127	None:intergenic	40.0%
	GGCTAGTAGCACACATATAA+GGG	+	chr3.4:72078645-72078664	None:intergenic	40.0%
	TATACGATGAACAGAGGAGT+AGG	+	chr3.4:72078609-72078628	None:intergenic	40.0%
	TTTCGTCGCTGTATAATCCA+CGG	+	chr3.4:72079116-72079135	None:intergenic	40.0%
!	CCTTGTTATACGATGAACAG+AGG	+	chr3.4:72078615-72078634	None:intergenic	40.0%
!	CCTTTTGATGTCGATGACTT+TGG	-	chr3.4:72079231-72079250	MS.gene29047:CDS	40.0%
!	GAACTTTTGCATCGTCACTA+CGG	+	chr3.4:72078780-72078799	None:intergenic	40.0%
!	GAGGATGATGGTGATTTCTT+CGG	-	chr3.4:72079159-72079178	MS.gene29047:CDS	40.0%
!	TTCTGATGATGAATTTGGGG+AGG	-	chr3.4:72079140-72079159	MS.gene29047:CDS	40.0%
	AGAGGAGTAGGATAGCATTG+TGG	+	chr3.4:72078597-72078616	None:intergenic	45.0%
	AGGAGTAGGATAGCATTGTG+GGG	+	chr3.4:72078595-72078614	None:intergenic	45.0%
	CGGCTAGTAGCACACATATA+AGG	+	chr3.4:72078646-72078665	None:intergenic	45.0%
	GAGGAGTAGGATAGCATTGT+GGG	+	chr3.4:72078596-72078615	None:intergenic	45.0%
	GATGAATTTGGGGAGGATGA+TGG	-	chr3.4:72079147-72079166	MS.gene29047:CDS	45.0%
	GTCTTTCCAACAGTATCCTG+TGG	+	chr3.4:72079308-72079327	None:intergenic	45.0%
	TCTTGCCATTCAGAGACTTC+CGG	+	chr3.4:72078864-72078883	None:intergenic	45.0%
	TGGAAAGACCTAGAAGACGA+CGG	-	chr3.4:72079319-72079338	MS.gene29047:CDS	45.0%
	TGGATTCCACAGGATACTGT+TGG	-	chr3.4:72079299-72079318	MS.gene29047:CDS	45.0%
	TTCCTTGTGACCTCGAGATT+GGG	+	chr3.4:72078458-72078477	None:intergenic	45.0%
	TTTCCTTGTGACCTCGAGAT+TGG	+	chr3.4:72078459-72078478	None:intergenic	45.0%
!	AAGATGGCTGTTCTTTTGCG+GGG	-	chr3.4:72078899-72078918	MS.gene29047:CDS	45.0%
!	CAAGATGGCTGTTCTTTTGC+GGG	-	chr3.4:72078898-72078917	MS.gene29047:CDS	45.0%
!	GCAAGATGGCTGTTCTTTTG+CGG	-	chr3.4:72078897-72078916	MS.gene29047:CDS	45.0%
!	TTCTTTTGCGGGGAGTTACA+AGG	-	chr3.4:72078909-72078928	MS.gene29047:CDS	45.0%
!	TTTCTTCGGCTCCATTGGTT+TGG	-	chr3.4:72079173-72079192	MS.gene29047:CDS	45.0%
!!	TTCTTCGGCTCCATTGGTTT+GGG	-	chr3.4:72079174-72079193	MS.gene29047:CDS	45.0%
!!	TTTCGGAGTGTTGCATCTAC+AGG	-	chr3.4:72079255-72079274	MS.gene29047:CDS	45.0%
	AAAGACCTAGAAGACGACGG+AGG	-	chr3.4:72079322-72079341	MS.gene29047:CDS	50.0%
	AACCTCCATACAGACTGAGC+AGG	+	chr3.4:72078572-72078591	None:intergenic	50.0%
	ACAGGTGAAAGGTTGGACTG+TGG	-	chr3.4:72078828-72078847	MS.gene29047:CDS	50.0%
	ACAGGTTCTGCTGCTCTTTC+TGG	-	chr3.4:72079273-72079292	MS.gene29047:CDS	50.0%
	CAAAGGGGACAAAGAAGCTC+AGG	+	chr3.4:72078802-72078821	None:intergenic	50.0%
	CAGTCCAACCTTTCACCTGT+CGG	+	chr3.4:72078828-72078847	None:intergenic	50.0%
	CTTGCCATTCAGAGACTTCC+GGG	+	chr3.4:72078863-72078882	None:intergenic	50.0%
	GGTGATTTCTTCGGCTCCAT+TGG	-	chr3.4:72079168-72079187	MS.gene29047:CDS	50.0%
	TACCTGCTCAGTCTGTATGG+AGG	-	chr3.4:72078567-72078586	MS.gene29047:CDS	50.0%
	TGCTACCTGCTCAGTCTGTA+TGG	-	chr3.4:72078564-72078583	MS.gene29047:CDS	50.0%
	TTTCTGGACGTGGATTCCAC+AGG	-	chr3.4:72079289-72079308	MS.gene29047:CDS	50.0%
!	TAGAAGACGACGGAGGCATA+GGG	-	chr3.4:72079329-72079348	MS.gene29047:CDS	50.0%
!!	AGGCATAGGGTACTGAATGC+TGG	-	chr3.4:72079342-72079361	MS.gene29047:CDS	50.0%
!!	ATAGGGTACTGAATGCTGGC+CGG	-	chr3.4:72079346-72079365	MS.gene29047:CDS	50.0%
!!	GTGGTACTGGCAGCTTTATC+AGG	-	chr3.4:72079196-72079215	MS.gene29047:CDS	50.0%
!!	TCCATTGGTTTGGGTGGTAC+TGG	-	chr3.4:72079183-72079202	MS.gene29047:CDS	50.0%
	AACTCCAGGGGCTATGGTAC+TGG	-	chr3.4:72079065-72079084	MS.gene29047:CDS	55.0%
	ACTCCAGGGGCTATGGTACT+GGG	-	chr3.4:72079066-72079085	MS.gene29047:CDS	55.0%
	ACTTCTCGTGGTCGCGAACA+TGG	+	chr3.4:72078964-72078983	None:intergenic	55.0%
	ATGTTCGCGACCACGAGAAG+TGG	-	chr3.4:72078963-72078982	MS.gene29047:CDS	55.0%
	CGGGGAGTTACAAGGAGCTT+AGG	-	chr3.4:72078917-72078936	MS.gene29047:CDS	55.0%
	CTATGCCTCCGTCGTCTTCT+AGG	+	chr3.4:72079330-72079349	None:intergenic	55.0%
	GCCAGTACCACCCAAACCAA+TGG	+	chr3.4:72079187-72079206	None:intergenic	55.0%
	GTCCCAATCTCGAGGTCACA+AGG	-	chr3.4:72078453-72078472	MS.gene29047:CDS	55.0%
	GTCTTCAACTCCAGGGGCTA+TGG	-	chr3.4:72079059-72079078	MS.gene29047:CDS	55.0%
	TCCAACCTTTCACCTGTCGG+CGG	+	chr3.4:72078825-72078844	None:intergenic	55.0%
	TCTGCTGCTCTTTCTGGACG+TGG	-	chr3.4:72079279-72079298	MS.gene29047:CDS	55.0%
	TTTCACCTGTCGGCGGCAAA+GGG	+	chr3.4:72078818-72078837	None:intergenic	55.0%
!	CTAGAAGACGACGGAGGCAT+AGG	-	chr3.4:72079328-72079347	MS.gene29047:CDS	55.0%
!!	TTCGGCTCCATTGGTTTGGG+TGG	-	chr3.4:72079177-72079196	MS.gene29047:CDS	55.0%
	CGGTGCAAGTCCCAATCTCG+AGG	-	chr3.4:72078445-72078464	MS.gene29047:CDS	60.0%
	CGTACAGGGTCCACTTCTCG+TGG	+	chr3.4:72078976-72078995	None:intergenic	60.0%
	CTCCAGGGGCTATGGTACTG+GGG	-	chr3.4:72079067-72079086	MS.gene29047:CDS	60.0%
	CTTTCACCTGTCGGCGGCAA+AGG	+	chr3.4:72078819-72078838	None:intergenic	60.0%
	CTTTGCCGCCGACAGGTGAA+AGG	-	chr3.4:72078817-72078836	MS.gene29047:CDS	60.0%
	GCAGCCCGGAAGTCTCTGAA+TGG	-	chr3.4:72078856-72078875	MS.gene29047:CDS	60.0%
	GGACTGTGGTTGAAGCAGCC+CGG	-	chr3.4:72078842-72078861	MS.gene29047:CDS	60.0%
	GTGCTCGAGCCAAATGACCG+TGG	-	chr3.4:72079096-72079115	MS.gene29047:CDS	60.0%
	TTCACCTGTCGGCGGCAAAG+GGG	+	chr3.4:72078817-72078836	None:intergenic	60.0%
!	TCCAGGGGCTATGGTACTGG+GGG	-	chr3.4:72079068-72079087	MS.gene29047:CDS	60.0%
	GCCGCCGACAGGTGAAAGGT+TGG	-	chr3.4:72078821-72078840	MS.gene29047:CDS	65.0%
	TCCCCCAGTACCATAGCCCC+TGG	+	chr3.4:72079072-72079091	None:intergenic	65.0%
	TTGTCCCCTTTGCCGCCGAC+AGG	-	chr3.4:72078810-72078829	MS.gene29047:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	72078442	72079371	72078442	ID=MS.gene29047
chr3.4	mRNA	72078442	72079371	72078442	ID=MS.gene29047.t1;Parent=MS.gene29047
chr3.4	exon	72078442	72079371	72078442	ID=MS.gene29047.t1.exon1;Parent=MS.gene29047.t1
chr3.4	CDS	72078442	72079371	72078442	ID=cds.MS.gene29047.t1;Parent=MS.gene29047.t1

Gene Sequence

>MS.gene29047

ATGCGGTGCAAGTCCCAATCTCGAGGTCACAAGGAAACCCCATATCTTTTATCTTGTGCTAGAAAAAATATGAAAAATGTCAAGAGGTTTTCTAAAGCGGTAGAAAAGAAAGATTGGAAAGGTGCTACCTGCTCAGTCTGTATGGAGGTTCCCCACAATGCTATCCTACTCCTCTGTTCATCGTATAACAAGGGCTGTCGCCCTTATATGTGTGCTACTAGCCGTCGCTATTCTAACTGTTTTGAACAGTATAAAAAGGCGTATACAAAAGCAACTTCTGTTCAAAGTTCGCAGCAAGAAACAGACTATTCGAATTTTGATTCTAATTCTGGCGACCGTAGTGACGATGCAAAAGTTCCTGAGCTTCTTTGTCCCCTTTGCCGCCGACAGGTGAAAGGTTGGACTGTGGTTGAAGCAGCCCGGAAGTCTCTGAATGGCAAGAAAAGAAGCTGTATGCAAGATGGCTGTTCTTTTGCGGGGAGTTACAAGGAGCTTAGGAAGCATGTTAGATCTAAGCATCCATGTTCGCGACCACGAGAAGTGGACCCTGTACGAGAAGAAAAATGGAAAAAATTCGAGTGTGAAAGAGAACGGAGTGATGTGATCAGCACAATTTTGTCTTCAACTCCAGGGGCTATGGTACTGGGGGATTATGTGCTCGAGCCAAATGACCGTGGATTATACAGCGACGAAACTGATTCTGATGATGAATTTGGGGAGGATGATGGTGATTTCTTCGGCTCCATTGGTTTGGGTGGTACTGGCAGCTTTATCAGGTATAATCAGAATCCTTTTGATGTCGATGACTTTGGTTTTCGGAGTGTTGCATCTACAGGTTCTGCTGCTCTTTCTGGACGTGGATTCCACAGGATACTGTTGGAAAGACCTAGAAGACGACGGAGGCATAGGGTACTGAATGCTGGCCGGTAA

Protein sequence

>MS.gene29047.t1

MRCKSQSRGHKETPYLLSCARKNMKNVKRFSKAVEKKDWKGATCSVCMEVPHNAILLLCSSYNKGCRPYMCATSRRYSNCFEQYKKAYTKATSVQSSQQETDYSNFDSNSGDRSDDAKVPELLCPLCRRQVKGWTVVEAARKSLNGKKRSCMQDGCSFAGSYKELRKHVRSKHPCSRPREVDPVREEKWKKFECERERSDVISTILSSTPGAMVLGDYVLEPNDRGLYSDETDSDDEFGEDDGDFFGSIGLGGTGSFIRYNQNPFDVDDFGFRSVASTGSAALSGRGFHRILLERPRRRRRHRVLNAGR