Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40702.t1 | XP_013462054.1 | 98 | 396 | 8 | 0 | 1 | 396 | 1 | 396 | 7.70E-226 | 792.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40702.t1 | Q8RXE9 | 71.3 | 366 | 95 | 2 | 33 | 396 | 49 | 406 | 2.6e-153 | 543.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40702.t1 | A0A072V216 | 98.0 | 396 | 8 | 0 | 1 | 396 | 1 | 396 | 5.5e-226 | 792.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene40702 | 0.860445 | 2.06E-63 | -1.69E-46 |
| MS.gene049173 | MS.gene40702 | 0.843029 | 1.80E-58 | -1.69E-46 |
| MS.gene049217 | MS.gene40702 | 0.885164 | 1.03E-71 | -1.69E-46 |
| MS.gene049222 | MS.gene40702 | 0.889397 | 2.51E-73 | -1.69E-46 |
| MS.gene049232 | MS.gene40702 | 0.858606 | 7.34E-63 | -1.69E-46 |
| MS.gene049285 | MS.gene40702 | 0.915563 | 5.07E-85 | -1.69E-46 |
| MS.gene049320 | MS.gene40702 | 0.898156 | 6.99E-77 | -1.69E-46 |
| MS.gene049609 | MS.gene40702 | 0.82587 | 3.70E-54 | -1.69E-46 |
| MS.gene049627 | MS.gene40702 | 0.87621 | 1.67E-68 | -1.69E-46 |
| MS.gene049633 | MS.gene40702 | 0.828177 | 1.04E-54 | -1.69E-46 |
| MS.gene049805 | MS.gene40702 | 0.813459 | 2.53E-51 | -1.69E-46 |
| MS.gene05010 | MS.gene40702 | 0.86296 | 3.50E-64 | -1.69E-46 |
| MS.gene050163 | MS.gene40702 | 0.914381 | 2.05E-84 | -1.69E-46 |
| MS.gene050165 | MS.gene40702 | 0.921922 | 1.92E-88 | -1.69E-46 |
| MS.gene050216 | MS.gene40702 | 0.828785 | 7.41E-55 | -1.69E-46 |
| MS.gene050323 | MS.gene40702 | 0.82812 | 1.07E-54 | -1.69E-46 |
| MS.gene050333 | MS.gene40702 | 0.939192 | 1.92E-99 | -1.69E-46 |
| MS.gene050444 | MS.gene40702 | 0.824325 | 8.58E-54 | -1.69E-46 |
| MS.gene050496 | MS.gene40702 | 0.822646 | 2.12E-53 | -1.69E-46 |
| MS.gene050504 | MS.gene40702 | 0.891286 | 4.56E-74 | -1.69E-46 |
| MS.gene050518 | MS.gene40702 | 0.904921 | 7.40E-80 | -1.69E-46 |
| MS.gene050577 | MS.gene40702 | 0.833854 | 4.20E-56 | -1.69E-46 |
| MS.gene050612 | MS.gene40702 | 0.890883 | 6.58E-74 | -1.69E-46 |
| MS.gene050675 | MS.gene40702 | 0.871949 | 4.63E-67 | -1.69E-46 |
| MS.gene050699 | MS.gene40702 | 0.87292 | 2.20E-67 | -1.69E-46 |
| MS.gene050747 | MS.gene40702 | 0.829005 | 6.56E-55 | -1.69E-46 |
| MS.gene050767 | MS.gene40702 | 0.808424 | 3.12E-50 | -1.69E-46 |
| MS.gene050770 | MS.gene40702 | 0.811484 | 6.84E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene40702 | 0.889596 | 2.10E-73 | -1.69E-46 |
| MS.gene05080 | MS.gene40702 | 0.806399 | 8.38E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene40702 | 0.817031 | 4.07E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene40702 | 0.813884 | 2.04E-51 | -1.69E-46 |
| MS.gene050876 | MS.gene40702 | 0.888522 | 5.48E-73 | -1.69E-46 |
| MS.gene05087 | MS.gene40702 | 0.875863 | 2.20E-68 | -1.69E-46 |
| MS.gene050904 | MS.gene40702 | 0.858698 | 6.89E-63 | -1.69E-46 |
| MS.gene050950 | MS.gene40702 | 0.825277 | 5.12E-54 | -1.69E-46 |
| MS.gene050986 | MS.gene40702 | 0.870925 | 1.01E-66 | -1.69E-46 |
| MS.gene05100 | MS.gene40702 | 0.870558 | 1.33E-66 | -1.69E-46 |
| MS.gene051228 | MS.gene40702 | 0.82424 | 8.99E-54 | -1.69E-46 |
| MS.gene051317 | MS.gene40702 | 0.836881 | 7.21E-57 | -1.69E-46 |
| MS.gene051364 | MS.gene40702 | -0.805691 | 1.18E-49 | -1.69E-46 |
| MS.gene051366 | MS.gene40702 | -0.812605 | 3.90E-51 | -1.69E-46 |
| MS.gene051367 | MS.gene40702 | -0.807072 | 6.04E-50 | -1.69E-46 |
| MS.gene051551 | MS.gene40702 | 0.831508 | 1.60E-55 | -1.69E-46 |
| MS.gene051564 | MS.gene40702 | 0.807905 | 4.02E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene40702 | 0.80024 | 1.58E-48 | -1.69E-46 |
| MS.gene051694 | MS.gene40702 | 0.84736 | 1.21E-59 | -1.69E-46 |
| MS.gene051810 | MS.gene40702 | 0.873874 | 1.05E-67 | -1.69E-46 |
| MS.gene051858 | MS.gene40702 | 0.855068 | 8.08E-62 | -1.69E-46 |
| MS.gene051949 | MS.gene40702 | 0.870023 | 2.00E-66 | -1.69E-46 |
| MS.gene052164 | MS.gene40702 | 0.81271 | 3.70E-51 | -1.69E-46 |
| MS.gene052271 | MS.gene40702 | 0.876509 | 1.32E-68 | -1.69E-46 |
| MS.gene052379 | MS.gene40702 | 0.834961 | 2.21E-56 | -1.69E-46 |
| MS.gene052482 | MS.gene40702 | 0.844727 | 6.32E-59 | -1.69E-46 |
| MS.gene052486 | MS.gene40702 | 0.862845 | 3.80E-64 | -1.69E-46 |
| MS.gene052605 | MS.gene40702 | 0.809501 | 1.83E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene40702 | 0.812283 | 4.58E-51 | -1.69E-46 |
| MS.gene052670 | MS.gene40702 | 0.826178 | 3.13E-54 | -1.69E-46 |
| MS.gene052822 | MS.gene40702 | 0.822357 | 2.47E-53 | -1.69E-46 |
| MS.gene052872 | MS.gene40702 | 0.807852 | 4.13E-50 | -1.69E-46 |
| MS.gene052916 | MS.gene40702 | 0.879068 | 1.68E-69 | -1.69E-46 |
| MS.gene052966 | MS.gene40702 | 0.832742 | 7.95E-56 | -1.69E-46 |
| MS.gene053009 | MS.gene40702 | 0.824554 | 7.58E-54 | -1.69E-46 |
| MS.gene053203 | MS.gene40702 | 0.824545 | 7.62E-54 | -1.69E-46 |
| MS.gene053207 | MS.gene40702 | 0.819754 | 9.84E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene40702 | 0.888549 | 5.35E-73 | -1.69E-46 |
| MS.gene053286 | MS.gene40702 | 0.887548 | 1.30E-72 | -1.69E-46 |
| MS.gene053322 | MS.gene40702 | 0.834461 | 2.96E-56 | -1.69E-46 |
| MS.gene053420 | MS.gene40702 | -0.811393 | 7.16E-51 | -1.69E-46 |
| MS.gene053574 | MS.gene40702 | 0.842806 | 2.06E-58 | -1.69E-46 |
| MS.gene053626 | MS.gene40702 | 0.802342 | 5.87E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene40702 | 0.836695 | 8.05E-57 | -1.69E-46 |
| MS.gene053824 | MS.gene40702 | 0.827297 | 1.69E-54 | -1.69E-46 |
| MS.gene053916 | MS.gene40702 | 0.823494 | 1.34E-53 | -1.69E-46 |
| MS.gene054374 | MS.gene40702 | 0.84449 | 7.32E-59 | -1.69E-46 |
| MS.gene054408 | MS.gene40702 | 0.818769 | 1.65E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene40702 | 0.824571 | 7.51E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene40702 | 0.860529 | 1.94E-63 | -1.69E-46 |
| MS.gene054616 | MS.gene40702 | -0.805472 | 1.31E-49 | -1.69E-46 |
| MS.gene054638 | MS.gene40702 | 0.842506 | 2.48E-58 | -1.69E-46 |
| MS.gene054642 | MS.gene40702 | 0.902487 | 9.22E-79 | -1.69E-46 |
| MS.gene05470 | MS.gene40702 | 0.805649 | 1.21E-49 | -1.69E-46 |
| MS.gene054802 | MS.gene40702 | 0.801307 | 9.58E-49 | -1.69E-46 |
| MS.gene054804 | MS.gene40702 | 0.803263 | 3.79E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene40702 | 0.898343 | 5.82E-77 | -1.69E-46 |
| MS.gene05505 | MS.gene40702 | 0.821564 | 3.77E-53 | -1.69E-46 |
| MS.gene055154 | MS.gene40702 | -0.816236 | 6.14E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene40702 | 0.818461 | 1.94E-52 | -1.69E-46 |
| MS.gene055212 | MS.gene40702 | 0.806026 | 1.00E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene40702 | -0.84621 | 2.51E-59 | -1.69E-46 |
| MS.gene055362 | MS.gene40702 | 0.897955 | 8.51E-77 | -1.69E-46 |
| MS.gene055397 | MS.gene40702 | 0.828204 | 1.02E-54 | -1.69E-46 |
| MS.gene055499 | MS.gene40702 | 0.844337 | 8.05E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene40702 | 0.876011 | 1.96E-68 | -1.69E-46 |
| MS.gene055577 | MS.gene40702 | 0.859774 | 3.28E-63 | -1.69E-46 |
| MS.gene055634 | MS.gene40702 | 0.912142 | 2.73E-83 | -1.69E-46 |
| MS.gene055636 | MS.gene40702 | 0.880606 | 4.78E-70 | -1.69E-46 |
| MS.gene055638 | MS.gene40702 | 0.904694 | 9.39E-80 | -1.69E-46 |
| MS.gene055647 | MS.gene40702 | 0.834541 | 2.82E-56 | -1.69E-46 |
| MS.gene055722 | MS.gene40702 | 0.851637 | 7.79E-61 | -1.69E-46 |
| MS.gene055748 | MS.gene40702 | 0.847554 | 1.07E-59 | -1.69E-46 |
| MS.gene055750 | MS.gene40702 | 0.860038 | 2.73E-63 | -1.69E-46 |
| MS.gene055751 | MS.gene40702 | 0.862544 | 4.70E-64 | -1.69E-46 |
| MS.gene055776 | MS.gene40702 | 0.837749 | 4.33E-57 | -1.69E-46 |
| MS.gene055849 | MS.gene40702 | 0.852761 | 3.73E-61 | -1.69E-46 |
| MS.gene05589 | MS.gene40702 | 0.80001 | 1.76E-48 | -1.69E-46 |
| MS.gene05592 | MS.gene40702 | 0.828864 | 7.09E-55 | -1.69E-46 |
| MS.gene055941 | MS.gene40702 | 0.842847 | 2.01E-58 | -1.69E-46 |
| MS.gene055956 | MS.gene40702 | -0.800563 | 1.36E-48 | -1.69E-46 |
| MS.gene056083 | MS.gene40702 | 0.816058 | 6.73E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene40702 | 0.862628 | 4.43E-64 | -1.69E-46 |
| MS.gene056409 | MS.gene40702 | 0.848739 | 5.06E-60 | -1.69E-46 |
| MS.gene056449 | MS.gene40702 | 0.857484 | 1.58E-62 | -1.69E-46 |
| MS.gene056450 | MS.gene40702 | 0.842304 | 2.81E-58 | -1.69E-46 |
| MS.gene056504 | MS.gene40702 | 0.855126 | 7.78E-62 | -1.69E-46 |
| MS.gene056510 | MS.gene40702 | 0.880228 | 6.52E-70 | -1.69E-46 |
| MS.gene056549 | MS.gene40702 | 0.875801 | 2.31E-68 | -1.69E-46 |
| MS.gene056610 | MS.gene40702 | 0.834684 | 2.60E-56 | -1.69E-46 |
| MS.gene056657 | MS.gene40702 | 0.907419 | 5.17E-81 | -1.69E-46 |
| MS.gene056692 | MS.gene40702 | 0.880374 | 5.78E-70 | -1.69E-46 |
| MS.gene056898 | MS.gene40702 | 0.821001 | 5.09E-53 | -1.69E-46 |
| MS.gene056910 | MS.gene40702 | 0.821199 | 4.58E-53 | -1.69E-46 |
| MS.gene057129 | MS.gene40702 | 0.843412 | 1.42E-58 | -1.69E-46 |
| MS.gene057331 | MS.gene40702 | 0.838995 | 2.06E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene40702 | 0.862911 | 3.62E-64 | -1.69E-46 |
| MS.gene057831 | MS.gene40702 | 0.855853 | 4.77E-62 | -1.69E-46 |
| MS.gene057926 | MS.gene40702 | 0.80286 | 4.59E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene40702 | 0.801992 | 6.93E-49 | -1.69E-46 |
| MS.gene058323 | MS.gene40702 | 0.825422 | 4.73E-54 | -1.69E-46 |
| MS.gene058335 | MS.gene40702 | 0.837904 | 3.95E-57 | -1.69E-46 |
| MS.gene058338 | MS.gene40702 | 0.800088 | 1.70E-48 | -1.69E-46 |
| MS.gene05837 | MS.gene40702 | 0.835382 | 1.73E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene40702 | 0.896468 | 3.58E-76 | -1.69E-46 |
| MS.gene05841 | MS.gene40702 | 0.801609 | 8.31E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene40702 | 0.830391 | 3.01E-55 | -1.69E-46 |
| MS.gene058719 | MS.gene40702 | 0.846727 | 1.81E-59 | -1.69E-46 |
| MS.gene058723 | MS.gene40702 | 0.842107 | 3.16E-58 | -1.69E-46 |
| MS.gene058773 | MS.gene40702 | 0.903814 | 2.35E-79 | -1.69E-46 |
| MS.gene059022 | MS.gene40702 | 0.899701 | 1.53E-77 | -1.69E-46 |
| MS.gene059023 | MS.gene40702 | 0.853653 | 2.07E-61 | -1.69E-46 |
| MS.gene059026 | MS.gene40702 | 0.811845 | 5.71E-51 | -1.69E-46 |
| MS.gene059029 | MS.gene40702 | 0.895979 | 5.73E-76 | -1.69E-46 |
| MS.gene059079 | MS.gene40702 | 0.857597 | 1.46E-62 | -1.69E-46 |
| MS.gene05912 | MS.gene40702 | 0.817583 | 3.06E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene40702 | 0.822396 | 2.42E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene40702 | 0.827177 | 1.81E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene40702 | 0.815111 | 1.09E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene40702 | 0.903847 | 2.27E-79 | -1.69E-46 |
| MS.gene059718 | MS.gene40702 | 0.878137 | 3.58E-69 | -1.69E-46 |
| MS.gene059756 | MS.gene40702 | 0.858755 | 6.63E-63 | -1.69E-46 |
| MS.gene059801 | MS.gene40702 | 0.853986 | 1.66E-61 | -1.69E-46 |
| MS.gene059865 | MS.gene40702 | 0.858951 | 5.79E-63 | -1.69E-46 |
| MS.gene059902 | MS.gene40702 | 0.84797 | 8.26E-60 | -1.69E-46 |
| MS.gene059960 | MS.gene40702 | 0.847431 | 1.16E-59 | -1.69E-46 |
| MS.gene060193 | MS.gene40702 | 0.832519 | 9.03E-56 | -1.69E-46 |
| MS.gene060337 | MS.gene40702 | -0.800521 | 1.39E-48 | -1.69E-46 |
| MS.gene060482 | MS.gene40702 | 0.800883 | 1.17E-48 | -1.69E-46 |
| MS.gene060703 | MS.gene40702 | 0.862874 | 3.72E-64 | -1.69E-46 |
| MS.gene060728 | MS.gene40702 | 0.802368 | 5.80E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene40702 | 0.870596 | 1.30E-66 | -1.69E-46 |
| MS.gene060778 | MS.gene40702 | 0.803091 | 4.11E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene40702 | 0.882122 | 1.36E-70 | -1.69E-46 |
| MS.gene060818 | MS.gene40702 | 0.805011 | 1.64E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene40702 | 0.827408 | 1.59E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene40702 | 0.84186 | 3.68E-58 | -1.69E-46 |
| MS.gene06105 | MS.gene40702 | 0.801788 | 7.63E-49 | -1.69E-46 |
| MS.gene061134 | MS.gene40702 | 0.852697 | 3.89E-61 | -1.69E-46 |
| MS.gene061150 | MS.gene40702 | 0.882483 | 1.00E-70 | -1.69E-46 |
| MS.gene061171 | MS.gene40702 | 0.925326 | 2.14E-90 | -1.69E-46 |
| MS.gene061200 | MS.gene40702 | 0.880446 | 5.45E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40702.t1 | MTR_3g110360 | 97.980 | 396 | 8 | 0 | 1 | 396 | 1 | 396 | 0.0 | 814 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40702.t1 | AT2G25840 | 70.350 | 371 | 96 | 3 | 32 | 396 | 48 | 410 | 0.0 | 525 |
| MS.gene40702.t1 | AT2G25840 | 71.117 | 367 | 96 | 2 | 32 | 396 | 48 | 406 | 0.0 | 523 |
| MS.gene40702.t1 | AT2G25840 | 68.937 | 367 | 92 | 3 | 32 | 396 | 48 | 394 | 3.43e-176 | 496 |
| MS.gene40702.t1 | AT2G25840 | 72.485 | 338 | 83 | 2 | 32 | 367 | 48 | 377 | 7.51e-170 | 480 |
Find 110 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAATTGGGTTGCCCTTC+AGG | 0.223058 | 3.2:+88493250 | MS.gene40702:CDS |
| ATATAATTACTTACATCTTT+AGG | 0.251940 | 3.2:-88498026 | None:intergenic |
| TTATTACATTCAGGCCTTTC+AGG | 0.255757 | 3.2:-88499886 | None:intergenic |
| GGTTATTTAGATAAAGTATT+AGG | 0.263586 | 3.2:+88504545 | MS.gene40702:CDS |
| TCTATATACCAGCTCGCTTC+TGG | 0.268429 | 3.2:+88499916 | MS.gene40702:CDS |
| AGGATCAAGAATATTGATTC+TGG | 0.275889 | 3.2:-88498006 | None:intergenic |
| GTGCTCCAGTTGGAGGTATA+AGG | 0.284117 | 3.2:-88496862 | None:intergenic |
| TGACCATTTGCAACCCATTC+AGG | 0.298866 | 3.2:+88500911 | MS.gene40702:CDS |
| CACCCCACATGCCAGGTAAA+TGG | 0.299294 | 3.2:-88494514 | None:intergenic |
| GCGAGGAGGTACTATATTTA+AGG | 0.309583 | 3.2:+88496740 | MS.gene40702:CDS |
| ACTTCGGTGCCATCAAGAAT+TGG | 0.323313 | 3.2:+88493237 | MS.gene40702:CDS |
| ATGAATGCCAAAACATGAAC+TGG | 0.328520 | 3.2:+88500853 | MS.gene40702:CDS |
| GAGCGGGTTAATAATTTATA+CGG | 0.346341 | 3.2:+88496591 | MS.gene40702:CDS |
| TTCTGATATACTTCTATATC+AGG | 0.347370 | 3.2:+88496272 | MS.gene40702:CDS |
| TTTAGGGAGATGATGAAGTT+GGG | 0.352166 | 3.2:+88496217 | MS.gene40702:intron |
| GAGGAACTCATGTCAGATTC+AGG | 0.363427 | 3.2:+88504524 | MS.gene40702:CDS |
| TGAAGATCAAAAGCAACATT+TGG | 0.366304 | 3.2:+88496548 | MS.gene40702:CDS |
| GAGAGAAGATTATTACATTC+AGG | 0.367486 | 3.2:-88499895 | None:intergenic |
| GGAAGAAAGTGGAAGAAATT+AGG | 0.367772 | 3.2:+88496615 | MS.gene40702:CDS |
| TGACTCACAACAATTATCTA+AGG | 0.375984 | 3.2:+88494473 | MS.gene40702:CDS |
| ATGTGCCCCAGTTCATGTTT+TGG | 0.386175 | 3.2:-88500860 | None:intergenic |
| TTTAATATTTGGAACCTGAA+TGG | 0.387697 | 3.2:-88500925 | None:intergenic |
| CCTTCGACAGGCCATCGGTT+AGG | 0.400959 | 3.2:-88496895 | None:intergenic |
| TTAATATTTGGAACCTGAAT+GGG | 0.412013 | 3.2:-88500924 | None:intergenic |
| TGCTCCAGTTGGAGGTATAA+GGG | 0.412909 | 3.2:-88496861 | None:intergenic |
| TGAATTACTTTACAGAGGTC+GGG | 0.423660 | 3.2:-88493081 | None:intergenic |
| TTTGACTTATCCTGTTCTGA+TGG | 0.435313 | 3.2:+88496248 | MS.gene40702:CDS |
| CATAATGTTTACCAAGCAAT+GGG | 0.438343 | 3.2:+88504611 | MS.gene40702:CDS |
| CTTCGACAGGCCATCGGTTA+GGG | 0.441098 | 3.2:-88496894 | None:intergenic |
| CTTCGGTGCCATCAAGAATT+GGG | 0.452924 | 3.2:+88493238 | MS.gene40702:CDS |
| ATATCAGAAGCCATCAGAAC+AGG | 0.454330 | 3.2:-88496258 | None:intergenic |
| AAGGGCAACCCAATTCTTGA+TGG | 0.459066 | 3.2:-88493246 | None:intergenic |
| CTAAGTTCTGTAACACCAAT+CGG | 0.472134 | 3.2:+88494707 | MS.gene40702:CDS |
| GTTTCCAAGGTGAATTGAAC+CGG | 0.473912 | 3.2:-88493213 | None:intergenic |
| TGCAGGAAACGAGTTGTCTC+CGG | 0.476909 | 3.2:+88493179 | MS.gene40702:intron |
| GTTGGAGGTATAAGGGGCTC+TGG | 0.477090 | 3.2:-88496854 | None:intergenic |
| ATCAAGGCATCTGTTAAAAG+AGG | 0.477251 | 3.2:-88500888 | None:intergenic |
| TCTTTAACAGGTTCGCTATG+AGG | 0.480999 | 3.2:+88504505 | MS.gene40702:intron |
| GACATAATCCGTGCTCCAGT+TGG | 0.481297 | 3.2:-88496872 | None:intergenic |
| AAAGTGTAAAGAACCTTTGA+AGG | 0.481470 | 3.2:-88494540 | None:intergenic |
| CATGTGCACGGACATGAGAC+TGG | 0.494374 | 3.2:-88494667 | None:intergenic |
| TCATAATGTTTACCAAGCAA+TGG | 0.495097 | 3.2:+88504610 | MS.gene40702:CDS |
| GAGCCCCTTATACCTCCAAC+TGG | 0.497992 | 3.2:+88496857 | MS.gene40702:CDS |
| TTAGGGAGATGATGAAGTTG+GGG | 0.498336 | 3.2:+88496218 | MS.gene40702:intron |
| CAGCCATTTACCTGGCATGT+GGG | 0.499723 | 3.2:+88494511 | MS.gene40702:CDS |
| GTGAATTACTTTACAGAGGT+CGG | 0.500582 | 3.2:-88493082 | None:intergenic |
| TTAGATAAAGTATTAGGAGA+AGG | 0.502751 | 3.2:+88504551 | MS.gene40702:CDS |
| GGGAGTCTGTGGAGAGGTAT+CGG | 0.509087 | 3.2:-88493050 | None:intergenic |
| TCCTCGAAAATCCCATTGCT+TGG | 0.509933 | 3.2:-88504622 | None:intergenic |
| ACAGAGGTCGGGGAAGGAGT+GGG | 0.518890 | 3.2:-88493070 | None:intergenic |
| ATTTATACGGAGGAAGAAAG+TGG | 0.524891 | 3.2:+88496604 | MS.gene40702:CDS |
| ATGTGGGGTGGATCCTTCAA+AGG | 0.528124 | 3.2:+88494527 | MS.gene40702:CDS |
| TACAGAGGTCGGGGAAGGAG+TGG | 0.529375 | 3.2:-88493071 | None:intergenic |
| GACCCGTGACTTAGCTGAGC+GGG | 0.529424 | 3.2:+88496575 | MS.gene40702:CDS |
| GTCAACCGCAGCCATTTACC+TGG | 0.531223 | 3.2:+88494503 | MS.gene40702:CDS |
| TTGATTCTGGATTGATCAGA+AGG | 0.532664 | 3.2:-88497993 | None:intergenic |
| CGATACACTTTACTTCATTG+TGG | 0.534595 | 3.2:+88493740 | MS.gene40702:CDS |
| AAGGATCCACCCCACATGCC+AGG | 0.536997 | 3.2:-88494521 | None:intergenic |
| GAACCTGAATGGGTTGCAAA+TGG | 0.538075 | 3.2:-88500914 | None:intergenic |
| GCAAAACTGATTCATTTCCA+AGG | 0.538524 | 3.2:+88499719 | MS.gene40702:CDS |
| TACTTTACAGAGGTCGGGGA+AGG | 0.539422 | 3.2:-88493076 | None:intergenic |
| GTCTCCGGAGTTCAACCTAC+CGG | 0.543876 | 3.2:+88493194 | MS.gene40702:CDS |
| GGGGAAGGAGTGGGAGTCTG+TGG | 0.546228 | 3.2:-88493061 | None:intergenic |
| TTAAAGAGAAATCTCGCAAG+GGG | 0.560100 | 3.2:+88494753 | MS.gene40702:CDS |
| CATTTACCTGGCATGTGGGG+TGG | 0.560694 | 3.2:+88494515 | MS.gene40702:CDS |
| GGGTTGCAAATGGTCAATCA+AGG | 0.563217 | 3.2:-88500904 | None:intergenic |
| ATTCACCTTGGAAACTACTT+CGG | 0.563842 | 3.2:+88493221 | MS.gene40702:CDS |
| ATAATCCGTGCTCCAGTTGG+AGG | 0.567908 | 3.2:-88496869 | None:intergenic |
| GAATTACTTTACAGAGGTCG+GGG | 0.580007 | 3.2:-88493080 | None:intergenic |
| TGAATGCCAAAACATGAACT+GGG | 0.584044 | 3.2:+88500854 | MS.gene40702:CDS |
| CCTAACCGATGGCCTGTCGA+AGG | 0.585232 | 3.2:+88496895 | MS.gene40702:CDS |
| GCAGCCATTTACCTGGCATG+TGG | 0.585942 | 3.2:+88494510 | MS.gene40702:CDS |
| ACATGCCAGGTAAATGGCTG+CGG | 0.588746 | 3.2:-88494508 | None:intergenic |
| GAAAGTGGAAGAAATTAGGC+GGG | 0.590519 | 3.2:+88496619 | MS.gene40702:CDS |
| CCAAGGTGAATTGAACCGGT+AGG | 0.593608 | 3.2:-88493209 | None:intergenic |
| AGCCATTTACCTGGCATGTG+GGG | 0.594275 | 3.2:+88494512 | MS.gene40702:CDS |
| CTTCATTGTGGATCTGCATG+CGG | 0.594642 | 3.2:+88493752 | MS.gene40702:CDS |
| GTTCTGTAACACCAATCGGC+TGG | 0.595560 | 3.2:+88494711 | MS.gene40702:CDS |
| AACCCGCTCAGCTAAGTCAC+GGG | 0.596314 | 3.2:-88496577 | None:intergenic |
| TGAGCGAGTGAGTACAGCGA+TGG | 0.596541 | 3.2:-88492890 | None:intergenic |
| ATTCTGTTTAGCCAGCCGAT+TGG | 0.597972 | 3.2:-88494722 | None:intergenic |
| AGTGGTGCAGCATCGAATGG+TGG | 0.600717 | 3.2:-88493023 | None:intergenic |
| GTTTAAAGAGAAATCTCGCA+AGG | 0.604667 | 3.2:+88494751 | MS.gene40702:CDS |
| TAGAGTGGTGCAGCATCGAA+TGG | 0.604960 | 3.2:-88493026 | None:intergenic |
| AGGAGTGGGAGTCTGTGGAG+AGG | 0.605509 | 3.2:-88493056 | None:intergenic |
| TGGCACCGAAGTAGTTTCCA+AGG | 0.610352 | 3.2:-88493226 | None:intergenic |
| GTGGTGCAGCATCGAATGGT+GGG | 0.610479 | 3.2:-88493022 | None:intergenic |
| TGGAAATCGACAATCCTGAA+AGG | 0.612101 | 3.2:+88499872 | MS.gene40702:CDS |
| CCTACCGGTTCAATTCACCT+TGG | 0.612153 | 3.2:+88493209 | MS.gene40702:CDS |
| GCTCCAGTTGGAGGTATAAG+GGG | 0.612995 | 3.2:-88496860 | None:intergenic |
| TAACCCGCTCAGCTAAGTCA+CGG | 0.613562 | 3.2:-88496578 | None:intergenic |
| TCCATTTATGACAGGCGAGG+AGG | 0.617031 | 3.2:+88496726 | MS.gene40702:intron |
| CGGATTATGTCCCTAACCGA+TGG | 0.620445 | 3.2:+88496884 | MS.gene40702:CDS |
| CGGGTTAATAATTTATACGG+AGG | 0.621370 | 3.2:+88496594 | MS.gene40702:CDS |
| GATAATTGTTGTGAGTCATG+AGG | 0.622880 | 3.2:-88494468 | None:intergenic |
| TTATACCTCCAACTGGAGCA+CGG | 0.623233 | 3.2:+88496864 | MS.gene40702:CDS |
| TTTAAAGAGAAATCTCGCAA+GGG | 0.626850 | 3.2:+88494752 | MS.gene40702:CDS |
| GATGGGTGTTTGTCATTACG+CGG | 0.627298 | 3.2:+88492850 | None:intergenic |
| TAAAACAAGCATAACCTGAA+GGG | 0.629037 | 3.2:-88493264 | None:intergenic |
| TGGAGAGGTATCGGATAGAG+TGG | 0.629202 | 3.2:-88493041 | None:intergenic |
| AGAAAGTGGAAGAAATTAGG+CGG | 0.631034 | 3.2:+88496618 | MS.gene40702:CDS |
| GAGCGAGTGAGTACAGCGAT+GGG | 0.638013 | 3.2:-88492889 | None:intergenic |
| TGCTGTGAATTACTTTACAG+AGG | 0.644052 | 3.2:-88493086 | None:intergenic |
| ACATCAATTCTACATGTGCA+CGG | 0.655753 | 3.2:-88494679 | None:intergenic |
| AGCGATGGGACGAAGCATGA+CGG | 0.662841 | 3.2:-88492875 | None:intergenic |
| TGAACCGGTAGGTTGAACTC+CGG | 0.671389 | 3.2:-88493198 | None:intergenic |
| GTGCACATGTAGAATTGATG+TGG | 0.674613 | 3.2:+88494681 | MS.gene40702:CDS |
| GAATGCCAAAACATGAACTG+GGG | 0.703767 | 3.2:+88500855 | MS.gene40702:CDS |
| TAAAGAGAAATCTCGCAAGG+GGG | 0.735812 | 3.2:+88494754 | MS.gene40702:CDS |
| TGACCCGTGACTTAGCTGAG+CGG | 0.744321 | 3.2:+88496574 | MS.gene40702:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 88492851 | 88504652 | 88492851 | ID=MS.gene40702 |
| chr3.2 | mRNA | 88492851 | 88504652 | 88492851 | ID=MS.gene40702.t1;Parent=MS.gene40702 |
| chr3.2 | exon | 88492851 | 88492897 | 88492851 | ID=MS.gene40702.t1.exon1;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88492851 | 88492897 | 88492851 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88492982 | 88493095 | 88492982 | ID=MS.gene40702.t1.exon2;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88492982 | 88493095 | 88492982 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88493184 | 88493271 | 88493184 | ID=MS.gene40702.t1.exon3;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88493184 | 88493271 | 88493184 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88493732 | 88493773 | 88493732 | ID=MS.gene40702.t1.exon4;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88493732 | 88493773 | 88493732 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88494459 | 88494548 | 88494459 | ID=MS.gene40702.t1.exon5;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88494459 | 88494548 | 88494459 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88494653 | 88494775 | 88494653 | ID=MS.gene40702.t1.exon6;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88494653 | 88494775 | 88494653 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88496222 | 88496293 | 88496222 | ID=MS.gene40702.t1.exon7;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88496222 | 88496293 | 88496222 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88496528 | 88496640 | 88496528 | ID=MS.gene40702.t1.exon8;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88496528 | 88496640 | 88496528 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88496740 | 88496761 | 88496740 | ID=MS.gene40702.t1.exon9;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88496740 | 88496761 | 88496740 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88496851 | 88496916 | 88496851 | ID=MS.gene40702.t1.exon10;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88496851 | 88496916 | 88496851 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88497978 | 88498034 | 88497978 | ID=MS.gene40702.t1.exon11;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88497978 | 88498034 | 88497978 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88499694 | 88499740 | 88499694 | ID=MS.gene40702.t1.exon12;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88499694 | 88499740 | 88499694 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88499870 | 88499951 | 88499870 | ID=MS.gene40702.t1.exon13;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88499870 | 88499951 | 88499870 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88500843 | 88500932 | 88500843 | ID=MS.gene40702.t1.exon14;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88500843 | 88500932 | 88500843 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| chr3.2 | exon | 88504515 | 88504652 | 88504515 | ID=MS.gene40702.t1.exon15;Parent=MS.gene40702.t1 |
| chr3.2 | CDS | 88504515 | 88504652 | 88504515 | ID=cds.MS.gene40702.t1;Parent=MS.gene40702.t1 |
| Gene Sequence |
| Protein sequence |
