Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84413.t1 | XP_024632498.1 | 95.5 | 583 | 15 | 1 | 1 | 572 | 1 | 583 | 4.10E-305 | 1056.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84413.t1 | Q42876 | 67.8 | 581 | 155 | 9 | 5 | 572 | 7 | 568 | 2.8e-209 | 729.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84413.t1 | A0A396J799 | 95.5 | 583 | 15 | 1 | 1 | 572 | 1 | 583 | 3.0e-305 | 1056.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene84413 | 0.840521 | 8.27E-58 | -1.69E-46 |
| MS.gene049173 | MS.gene84413 | 0.810491 | 1.12E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene84413 | 0.862195 | 6.02E-64 | -1.69E-46 |
| MS.gene049222 | MS.gene84413 | 0.848911 | 4.53E-60 | -1.69E-46 |
| MS.gene049232 | MS.gene84413 | 0.838038 | 3.65E-57 | -1.69E-46 |
| MS.gene049285 | MS.gene84413 | 0.878691 | 2.29E-69 | -1.69E-46 |
| MS.gene049320 | MS.gene84413 | 0.871837 | 5.04E-67 | -1.69E-46 |
| MS.gene04938 | MS.gene84413 | 0.810282 | 1.25E-50 | -1.69E-46 |
| MS.gene04939 | MS.gene84413 | 0.842055 | 3.27E-58 | -1.69E-46 |
| MS.gene049483 | MS.gene84413 | -0.801539 | 8.59E-49 | -1.69E-46 |
| MS.gene049627 | MS.gene84413 | 0.88377 | 3.39E-71 | -1.69E-46 |
| MS.gene05010 | MS.gene84413 | 0.850405 | 1.74E-60 | -1.69E-46 |
| MS.gene050163 | MS.gene84413 | 0.901233 | 3.29E-78 | -1.69E-46 |
| MS.gene050165 | MS.gene84413 | 0.907236 | 6.30E-81 | -1.69E-46 |
| MS.gene050216 | MS.gene84413 | 0.811775 | 5.91E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene84413 | 0.898769 | 3.84E-77 | -1.69E-46 |
| MS.gene050353 | MS.gene84413 | -0.808418 | 3.13E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene84413 | 0.884042 | 2.69E-71 | -1.69E-46 |
| MS.gene050518 | MS.gene84413 | 0.888046 | 8.36E-73 | -1.69E-46 |
| MS.gene050577 | MS.gene84413 | 0.822163 | 2.74E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene84413 | 0.881612 | 2.08E-70 | -1.69E-46 |
| MS.gene050675 | MS.gene84413 | 0.849273 | 3.60E-60 | -1.69E-46 |
| MS.gene050699 | MS.gene84413 | 0.84937 | 3.38E-60 | -1.69E-46 |
| MS.gene050772 | MS.gene84413 | 0.823195 | 1.58E-53 | -1.69E-46 |
| MS.gene050876 | MS.gene84413 | 0.850756 | 1.38E-60 | -1.69E-46 |
| MS.gene05087 | MS.gene84413 | 0.893277 | 7.30E-75 | -1.69E-46 |
| MS.gene050883 | MS.gene84413 | -0.802676 | 5.01E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene84413 | 0.841447 | 4.73E-58 | -1.69E-46 |
| MS.gene050986 | MS.gene84413 | 0.886519 | 3.19E-72 | -1.69E-46 |
| MS.gene05100 | MS.gene84413 | 0.857867 | 1.22E-62 | -1.69E-46 |
| MS.gene051317 | MS.gene84413 | 0.827012 | 1.98E-54 | -1.69E-46 |
| MS.gene051551 | MS.gene84413 | 0.827311 | 1.68E-54 | -1.69E-46 |
| MS.gene051564 | MS.gene84413 | 0.82257 | 2.21E-53 | -1.69E-46 |
| MS.gene051810 | MS.gene84413 | 0.84423 | 8.60E-59 | -1.69E-46 |
| MS.gene052164 | MS.gene84413 | 0.813381 | 2.63E-51 | -1.69E-46 |
| MS.gene052271 | MS.gene84413 | 0.820126 | 8.09E-53 | -1.69E-46 |
| MS.gene052482 | MS.gene84413 | 0.849031 | 4.20E-60 | -1.69E-46 |
| MS.gene052486 | MS.gene84413 | 0.861132 | 1.27E-63 | -1.69E-46 |
| MS.gene052670 | MS.gene84413 | 0.860015 | 2.77E-63 | -1.69E-46 |
| MS.gene052966 | MS.gene84413 | 0.819842 | 9.39E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene84413 | 0.800623 | 1.32E-48 | -1.69E-46 |
| MS.gene053213 | MS.gene84413 | 0.835219 | 1.91E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene84413 | 0.837061 | 6.49E-57 | -1.69E-46 |
| MS.gene053420 | MS.gene84413 | -0.815662 | 8.24E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene84413 | 0.80086 | 1.18E-48 | -1.69E-46 |
| MS.gene053632 | MS.gene84413 | 0.804618 | 1.98E-49 | -1.69E-46 |
| MS.gene054374 | MS.gene84413 | 0.826952 | 2.05E-54 | -1.69E-46 |
| MS.gene054595 | MS.gene84413 | 0.821123 | 4.77E-53 | -1.69E-46 |
| MS.gene054600 | MS.gene84413 | 0.829432 | 5.17E-55 | -1.69E-46 |
| MS.gene054616 | MS.gene84413 | -0.835329 | 1.79E-56 | -1.69E-46 |
| MS.gene054638 | MS.gene84413 | 0.839001 | 2.06E-57 | -1.69E-46 |
| MS.gene054642 | MS.gene84413 | 0.854557 | 1.14E-61 | -1.69E-46 |
| MS.gene05470 | MS.gene84413 | 0.81782 | 2.70E-52 | -1.69E-46 |
| MS.gene054954 | MS.gene84413 | 0.875302 | 3.43E-68 | -1.69E-46 |
| MS.gene055154 | MS.gene84413 | -0.818155 | 2.27E-52 | -1.69E-46 |
| MS.gene055333 | MS.gene84413 | -0.835423 | 1.69E-56 | -1.69E-46 |
| MS.gene055362 | MS.gene84413 | 0.871461 | 6.71E-67 | -1.69E-46 |
| MS.gene055502 | MS.gene84413 | 0.85717 | 1.96E-62 | -1.69E-46 |
| MS.gene055634 | MS.gene84413 | 0.882839 | 7.44E-71 | -1.69E-46 |
| MS.gene055636 | MS.gene84413 | 0.823713 | 1.19E-53 | -1.69E-46 |
| MS.gene055638 | MS.gene84413 | 0.858613 | 7.30E-63 | -1.69E-46 |
| MS.gene055748 | MS.gene84413 | 0.82358 | 1.28E-53 | -1.69E-46 |
| MS.gene055750 | MS.gene84413 | 0.814753 | 1.31E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene84413 | 0.83107 | 2.06E-55 | -1.69E-46 |
| MS.gene055776 | MS.gene84413 | 0.823127 | 1.64E-53 | -1.69E-46 |
| MS.gene05589 | MS.gene84413 | 0.811997 | 5.29E-51 | -1.69E-46 |
| MS.gene056374 | MS.gene84413 | 0.802134 | 6.48E-49 | -1.69E-46 |
| MS.gene056409 | MS.gene84413 | 0.803316 | 3.70E-49 | -1.69E-46 |
| MS.gene056449 | MS.gene84413 | 0.820769 | 5.76E-53 | -1.69E-46 |
| MS.gene056450 | MS.gene84413 | 0.855162 | 7.59E-62 | -1.69E-46 |
| MS.gene056504 | MS.gene84413 | 0.842887 | 1.97E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene84413 | 0.8518 | 7.01E-61 | -1.69E-46 |
| MS.gene056549 | MS.gene84413 | 0.818257 | 2.15E-52 | -1.69E-46 |
| MS.gene056550 | MS.gene84413 | -0.823828 | 1.12E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene84413 | 0.873397 | 1.52E-67 | -1.69E-46 |
| MS.gene056692 | MS.gene84413 | 0.852369 | 4.83E-61 | -1.69E-46 |
| MS.gene057148 | MS.gene84413 | 0.810347 | 1.21E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene84413 | 0.803448 | 3.47E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene84413 | 0.853885 | 1.78E-61 | -1.69E-46 |
| MS.gene058335 | MS.gene84413 | 0.844375 | 7.86E-59 | -1.69E-46 |
| MS.gene05837 | MS.gene84413 | 0.806353 | 8.57E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene84413 | 0.860435 | 2.07E-63 | -1.69E-46 |
| MS.gene058544 | MS.gene84413 | 0.815247 | 1.02E-51 | -1.69E-46 |
| MS.gene058719 | MS.gene84413 | 0.870586 | 1.31E-66 | -1.69E-46 |
| MS.gene058773 | MS.gene84413 | 0.864864 | 8.94E-65 | -1.69E-46 |
| MS.gene059022 | MS.gene84413 | 0.885484 | 7.82E-72 | -1.69E-46 |
| MS.gene059023 | MS.gene84413 | 0.822221 | 2.66E-53 | -1.69E-46 |
| MS.gene059029 | MS.gene84413 | 0.832083 | 1.16E-55 | -1.69E-46 |
| MS.gene05912 | MS.gene84413 | 0.818668 | 1.74E-52 | -1.69E-46 |
| MS.gene059479 | MS.gene84413 | -0.801805 | 7.57E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene84413 | 0.878137 | 3.58E-69 | -1.69E-46 |
| MS.gene059718 | MS.gene84413 | 0.858909 | 5.96E-63 | -1.69E-46 |
| MS.gene059756 | MS.gene84413 | 0.81131 | 7.46E-51 | -1.69E-46 |
| MS.gene059801 | MS.gene84413 | 0.813369 | 2.65E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene84413 | 0.834456 | 2.97E-56 | -1.69E-46 |
| MS.gene060337 | MS.gene84413 | -0.81277 | 3.59E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene84413 | 0.861558 | 9.43E-64 | -1.69E-46 |
| MS.gene060762 | MS.gene84413 | 0.844235 | 8.57E-59 | -1.69E-46 |
| MS.gene060778 | MS.gene84413 | 0.81094 | 8.98E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene84413 | 0.876071 | 1.87E-68 | -1.69E-46 |
| MS.gene060982 | MS.gene84413 | 0.816002 | 6.92E-52 | -1.69E-46 |
| MS.gene061134 | MS.gene84413 | 0.816837 | 4.50E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene84413 | 0.827568 | 1.46E-54 | -1.69E-46 |
| MS.gene061171 | MS.gene84413 | 0.84832 | 6.61E-60 | -1.69E-46 |
| MS.gene061200 | MS.gene84413 | 0.807661 | 4.53E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84413.t1 | MTR_4g130860 | 76.762 | 525 | 101 | 6 | 62 | 572 | 50 | 567 | 0.0 | 813 |
| MS.gene84413.t1 | MTR_2g460760 | 92.997 | 357 | 14 | 1 | 1 | 346 | 1 | 357 | 0.0 | 602 |
| MS.gene84413.t1 | MTR_2g460740 | 98.696 | 230 | 3 | 0 | 343 | 572 | 17 | 246 | 3.04e-167 | 475 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84413.t1 | AT2G24200 | 72.031 | 522 | 129 | 4 | 62 | 572 | 4 | 519 | 0.0 | 757 |
| MS.gene84413.t1 | AT2G24200 | 72.031 | 522 | 129 | 4 | 62 | 572 | 4 | 519 | 0.0 | 757 |
| MS.gene84413.t1 | AT4G30920 | 72.106 | 527 | 126 | 6 | 60 | 572 | 63 | 582 | 0.0 | 740 |
| MS.gene84413.t1 | AT4G30910 | 68.501 | 527 | 145 | 6 | 60 | 572 | 62 | 581 | 0.0 | 700 |
| MS.gene84413.t1 | AT4G30910 | 65.636 | 550 | 145 | 7 | 60 | 572 | 62 | 604 | 0.0 | 688 |
| MS.gene84413.t1 | AT2G24200 | 66.858 | 522 | 120 | 5 | 62 | 572 | 4 | 483 | 0.0 | 684 |
| MS.gene84413.t1 | AT5G13940 | 72.917 | 48 | 13 | 0 | 283 | 330 | 66 | 113 | 3.04e-15 | 79.7 |
Find 154 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAATCACTTGATATTAT+TGG | 0.174623 | 2.4:-37341079 | MS.gene84413:CDS |
| CAATAATATCAAGTGATTTA+AGG | 0.213855 | 2.4:+37341080 | None:intergenic |
| TTAAGTTTCTTCTCGAATTC+AGG | 0.248834 | 2.4:+37341043 | None:intergenic |
| TCTAAATTAGGCGGTTTATT+AGG | 0.263788 | 2.4:-37341427 | MS.gene84413:CDS |
| TTTAAGGGCCGGTTTCTTCT+TGG | 0.272500 | 2.4:+37341096 | None:intergenic |
| GATATTATTGGTCTTGGAAC+AGG | 0.287196 | 2.4:-37341067 | MS.gene84413:CDS |
| GTATCTTCTGGAATCATTCT+TGG | 0.293774 | 2.4:-37341007 | MS.gene84413:CDS |
| TGAGCTCATGAAATTTGATA+TGG | 0.294915 | 2.4:-37338182 | MS.gene84413:CDS |
| CAGCGTTGTGCAACAGGATT+TGG | 0.300152 | 2.4:-37331359 | MS.gene84413:CDS |
| GCAGTGTAAGGAATTGAATA+TGG | 0.300638 | 2.4:-37340066 | MS.gene84413:CDS |
| ATTGACCTGGCAACATTAAC+TGG | 0.335424 | 2.4:-37333649 | MS.gene84413:CDS |
| TCACTTGATATTATTGGTCT+TGG | 0.336063 | 2.4:-37341073 | MS.gene84413:CDS |
| GTGTTCTCAATATCTGATTC+TGG | 0.337101 | 2.4:+37341455 | None:intergenic |
| CCGTCACGGCAACTGCTAAT+AGG | 0.341853 | 2.4:+37341512 | None:intergenic |
| GCGATTGCAGAAGCAATGTT+AGG | 0.343895 | 2.4:+37341169 | None:intergenic |
| ATTGAATATGGGATCCTATC+TGG | 0.350799 | 2.4:-37340054 | MS.gene84413:CDS |
| ATGCCTCCTCGCGCCACTCT+TGG | 0.351068 | 2.4:-37341861 | MS.gene84413:CDS |
| CTACCTGGTGTGAGCACATT+AGG | 0.353631 | 2.4:+37340962 | None:intergenic |
| GAAAAGCAGCGTTGTGCAAC+AGG | 0.353953 | 2.4:-37331365 | MS.gene84413:CDS |
| TGCCAATGGAAGAAAGTTAC+TGG | 0.367635 | 2.4:-37332005 | MS.gene84413:CDS |
| TCAATGGATGCATATTGATT+TGG | 0.374105 | 2.4:-37331405 | MS.gene84413:CDS |
| AATAATATCAAGTGATTTAA+GGG | 0.375912 | 2.4:+37341081 | None:intergenic |
| GCTCTAGGACCCTCAATTGC+AGG | 0.382807 | 2.4:-37333613 | MS.gene84413:intron |
| AGAACACTAGACTCTAAATT+AGG | 0.382808 | 2.4:-37341439 | MS.gene84413:CDS |
| GCTTACTCTGGCTGATGCTC+TGG | 0.386123 | 2.4:-37334021 | MS.gene84413:CDS |
| TTTGGAGCAGCAAAGGCTAT+TGG | 0.389431 | 2.4:-37338142 | MS.gene84413:CDS |
| ATGTGAGCGGGGAGAAACTA+TGG | 0.394427 | 2.4:-37332032 | MS.gene84413:CDS |
| ATTTGGTGTATCAACTTTAG+TGG | 0.399529 | 2.4:-37331342 | MS.gene84413:CDS |
| GTCCAGCAGCAGGTGTAATT+CGG | 0.413560 | 2.4:+37341350 | None:intergenic |
| TACTGGGAATCAATGAAATC+AGG | 0.419927 | 2.4:-37331988 | MS.gene84413:CDS |
| TCAGAAGAAGACTCGGTCTA+AGG | 0.425629 | 2.4:-37341947 | MS.gene84413:CDS |
| GGCCGGTTTCTTCTTGGACT+CGG | 0.427102 | 2.4:+37341102 | None:intergenic |
| TCCAAGAGACTCGCCTTGAT+TGG | 0.429219 | 2.4:-37341322 | MS.gene84413:CDS |
| GTGTATCAACTTTAGTGGAA+TGG | 0.429941 | 2.4:-37331337 | MS.gene84413:CDS |
| TCCCAGTAACTTTCTTCCAT+TGG | 0.430091 | 2.4:+37332003 | None:intergenic |
| GAGAATATGATAAGTGGAAC+AGG | 0.431241 | 2.4:-37334998 | MS.gene84413:CDS |
| ATTACACCTGCTGCTGGACT+TGG | 0.432997 | 2.4:-37341346 | MS.gene84413:CDS |
| GCCAATCAAGGCGAGTCTCT+TGG | 0.434300 | 2.4:+37341321 | None:intergenic |
| TTGTAACCAAGGTGTGGATA+AGG | 0.434397 | 2.4:-37333991 | MS.gene84413:intron |
| TGTATCAACTTTAGTGGAAT+GGG | 0.444480 | 2.4:-37331336 | MS.gene84413:CDS |
| ATTGCTTCTGCAATCGCCAC+TGG | 0.445457 | 2.4:-37341163 | MS.gene84413:CDS |
| TATGCAGGAGATGTATCTTC+TGG | 0.447764 | 2.4:-37341019 | MS.gene84413:CDS |
| CTCATGATTACCTGCAATTG+AGG | 0.453250 | 2.4:+37333603 | None:intergenic |
| GAGACGAGAAGAGGAGAATG+AGG | 0.464529 | 2.4:+37341974 | None:intergenic |
| GGAAGCTGTGACAATGTCTC+CGG | 0.471511 | 2.4:+37334967 | None:intergenic |
| TTCTTTAGCCAGGTCATCAC+TGG | 0.471955 | 2.4:+37332071 | None:intergenic |
| CTGTGTTATAAACCACCAAC+TGG | 0.477290 | 2.4:-37339990 | MS.gene84413:CDS |
| TTCTGGAATCATTCTTGGAC+GGG | 0.477480 | 2.4:-37341002 | MS.gene84413:CDS |
| TTTGCAGTTTGTTGATGAAA+AGG | 0.478445 | 2.4:-37331429 | MS.gene84413:intron |
| CGATTGCAGAAGCAATGTTA+GGG | 0.480670 | 2.4:+37341170 | None:intergenic |
| AATGCCAACTTGACATTGAC+AGG | 0.483813 | 2.4:+37339966 | None:intergenic |
| AAGTTGGCATTAGTCGGAAA+AGG | 0.484155 | 2.4:-37339954 | MS.gene84413:CDS |
| ATTGGTCAAATCAAACCTCT+TGG | 0.491039 | 2.4:-37338124 | MS.gene84413:CDS |
| CTGATGTGGCGGAATGGAAA+GGG | 0.491199 | 2.4:-37341537 | MS.gene84413:CDS |
| TTCTGCAGCTAACTTCGCTC+AGG | 0.495755 | 2.4:-37341242 | MS.gene84413:CDS |
| CTTTAGTGGAATGGGTATTG+AGG | 0.496078 | 2.4:-37331328 | MS.gene84413:CDS |
| GTCCGAGTCCAAGAAGAAAC+CGG | 0.503814 | 2.4:-37341104 | MS.gene84413:CDS |
| ATATCAAGTGATTTAAGGGC+CGG | 0.505431 | 2.4:+37341085 | None:intergenic |
| CTCTTCATCAGAAGAAGACT+CGG | 0.508584 | 2.4:-37341954 | MS.gene84413:CDS |
| TTGTTGATGAAAAGGTTCAA+TGG | 0.510573 | 2.4:-37331421 | MS.gene84413:CDS |
| CTGCTCAGCATCCAATACTT+TGG | 0.511072 | 2.4:+37340085 | None:intergenic |
| ACATTGACAGGTCCAGTTGG+TGG | 0.511434 | 2.4:+37339978 | None:intergenic |
| AGTGAAGTCCTCTTCGGACG+AGG | 0.513926 | 2.4:+37341399 | None:intergenic |
| ATTGGATGCTGAGCAGTGTA+AGG | 0.514214 | 2.4:-37340078 | MS.gene84413:CDS |
| AGTGAGAATAGTAGATGAGG+AGG | 0.515044 | 2.4:+37342016 | None:intergenic |
| GGCTGCAGCAACAGCCAGAT+AGG | 0.519387 | 2.4:+37340040 | None:intergenic |
| CCGCCTAATGTGCTCACACC+AGG | 0.520105 | 2.4:-37340965 | MS.gene84413:intron |
| TCATGATTACCTGCAATTGA+GGG | 0.527240 | 2.4:+37333604 | None:intergenic |
| AGTAGTGAGAATAGTAGATG+AGG | 0.528530 | 2.4:+37342013 | None:intergenic |
| AGATGAGCCGAGGCCAATCA+AGG | 0.528615 | 2.4:+37341309 | None:intergenic |
| TGCTGAGGGTAGGCTTACTC+TGG | 0.528850 | 2.4:-37334033 | MS.gene84413:CDS |
| TCGTCCGAAGAGGACTTCAC+TGG | 0.529813 | 2.4:-37341397 | MS.gene84413:CDS |
| GAGCTCATGAAATTTGATAT+GGG | 0.529929 | 2.4:-37338181 | MS.gene84413:CDS |
| ATGCACCAGTTAATGTTGCC+AGG | 0.529940 | 2.4:+37333644 | None:intergenic |
| AGCACCACCTTGACGACCAC+CGG | 0.532762 | 2.4:+37331945 | None:intergenic |
| CTCCGAATTACACCTGCTGC+TGG | 0.532926 | 2.4:-37341352 | MS.gene84413:CDS |
| TTGATGCTTCTGATGTGAGC+GGG | 0.535615 | 2.4:-37332044 | MS.gene84413:CDS |
| GCAGTGAGTCCTTGAGAAGT+GGG | 0.538894 | 2.4:+37341193 | None:intergenic |
| GAGGACTTCACTGGAAAACT+CGG | 0.540308 | 2.4:-37341388 | MS.gene84413:CDS |
| TGCTCTTCAGATAATTGACC+TGG | 0.541191 | 2.4:-37333662 | MS.gene84413:intron |
| TTGCTTCTGCAATCGCCACT+GGG | 0.543365 | 2.4:-37341162 | MS.gene84413:CDS |
| CAGTGTAAGGAATTGAATAT+GGG | 0.544881 | 2.4:-37340065 | MS.gene84413:CDS |
| GAGAAGAAACTTAAGTATGC+AGG | 0.546266 | 2.4:-37341034 | MS.gene84413:CDS |
| CTGATACTGATGTGGCGGAA+TGG | 0.546886 | 2.4:-37341543 | MS.gene84413:CDS |
| GGTGCATGTATAATTGCTCT+AGG | 0.548072 | 2.4:-37333628 | MS.gene84413:CDS |
| GGCATAATGAGGTTGCGGAC+AGG | 0.548592 | 2.4:+37341879 | None:intergenic |
| AATGTCAAGTTGGCATTAGT+CGG | 0.549056 | 2.4:-37339960 | MS.gene84413:CDS |
| GGTGGCTACAATATAAAGAC+AGG | 0.551468 | 2.4:-37338220 | MS.gene84413:CDS |
| GGCAGTGAGTCCTTGAGAAG+TGG | 0.551479 | 2.4:+37341192 | None:intergenic |
| ACTGATGTGGCGGAATGGAA+AGG | 0.554911 | 2.4:-37341538 | MS.gene84413:CDS |
| CTTCTGGAATCATTCTTGGA+CGG | 0.556172 | 2.4:-37341003 | MS.gene84413:CDS |
| CCTATTAGCAGTTGCCGTGA+CGG | 0.558998 | 2.4:-37341512 | MS.gene84413:CDS |
| TTGGATCCAAGTCCAGCAGC+AGG | 0.562328 | 2.4:+37341340 | None:intergenic |
| GAAGCTGTGACAATGTCTCC+GGG | 0.564125 | 2.4:+37334968 | None:intergenic |
| TGGATGCATATTGATTTGGC+TGG | 0.565101 | 2.4:-37331401 | MS.gene84413:CDS |
| GACATTGTCACAGCTTCCAA+TGG | 0.565824 | 2.4:-37334962 | MS.gene84413:CDS |
| AGACTCGCCTTGATTGGCCT+CGG | 0.567237 | 2.4:-37341316 | MS.gene84413:CDS |
| CTGGTGTATGCTTGTAACCA+AGG | 0.569089 | 2.4:-37334002 | MS.gene84413:CDS |
| ATATTATTGGTCTTGGAACA+GGG | 0.572432 | 2.4:-37341066 | MS.gene84413:CDS |
| GAGGAGGCATAATGAGGTTG+CGG | 0.572965 | 2.4:+37341874 | None:intergenic |
| ATGAGCTCAATCATACAGCC+AGG | 0.573251 | 2.4:+37338196 | None:intergenic |
| TGCAAACCTTATCCACACCT+TGG | 0.574830 | 2.4:+37333985 | None:intergenic |
| CTGAACACCGGTGGTCGTCA+AGG | 0.578044 | 2.4:-37331952 | MS.gene84413:CDS |
| TGGACCTGTCAATGTCAAGT+TGG | 0.580098 | 2.4:-37339970 | MS.gene84413:CDS |
| AATCAAACCTCTTGGAGTGG+AGG | 0.584428 | 2.4:-37338116 | MS.gene84413:intron |
| GCTTGTGAGAATATGATAAG+TGG | 0.585466 | 2.4:-37335004 | MS.gene84413:CDS |
| AAGCCAAGAGTGGCGCGAGG+AGG | 0.587921 | 2.4:+37341858 | None:intergenic |
| GTTGTTCTACCCACTTCTCA+AGG | 0.589480 | 2.4:-37341202 | MS.gene84413:CDS |
| GGTTGCGGACAGGTACTTCG+CGG | 0.599917 | 2.4:+37341889 | None:intergenic |
| ATTTACAACCAGTGATGACC+TGG | 0.603884 | 2.4:-37332079 | MS.gene84413:CDS |
| GAAACTATGGAGGATGCCAA+TGG | 0.604081 | 2.4:-37332019 | MS.gene84413:CDS |
| TAGAGGAAGCAGATGAGCCG+AGG | 0.607505 | 2.4:+37341299 | None:intergenic |
| TGGCGCGAGGAGGCATAATG+AGG | 0.611619 | 2.4:+37341868 | None:intergenic |
| TCTGATGAAGAGACGAGAAG+AGG | 0.614468 | 2.4:+37341965 | None:intergenic |
| TACAATATAAAGACAGGACC+TGG | 0.618282 | 2.4:-37338214 | MS.gene84413:CDS |
| GGTTAACAACACAGATGCTG+AGG | 0.621469 | 2.4:-37334048 | MS.gene84413:CDS |
| CTTCGCGGGTCAAACAAAGA+TGG | 0.623294 | 2.4:+37341904 | None:intergenic |
| TAACAGACCTCCACTCCAAG+AGG | 0.623708 | 2.4:+37338109 | None:intergenic |
| TTGATTTGGCTGGTCCTGTG+TGG | 0.624990 | 2.4:-37331391 | MS.gene84413:CDS |
| TAGAACAACGACAGCAACAT+CGG | 0.625044 | 2.4:+37341216 | None:intergenic |
| TTGACATTGACAGGTCCAGT+TGG | 0.625230 | 2.4:+37339975 | None:intergenic |
| GCCAATGGAAGAAAGTTACT+GGG | 0.626087 | 2.4:-37332004 | MS.gene84413:CDS |
| TCAAATCAAACCTCTTGGAG+TGG | 0.631046 | 2.4:-37338119 | MS.gene84413:CDS |
| AACACCGGTGGTCGTCAAGG+TGG | 0.632459 | 2.4:-37331949 | MS.gene84413:CDS |
| ACACTAGACTCTAAATTAGG+CGG | 0.637017 | 2.4:-37341436 | MS.gene84413:CDS |
| AGGTGAAGCCTCGTCCGAAG+AGG | 0.638183 | 2.4:-37341407 | MS.gene84413:CDS |
| GTTGCGGACAGGTACTTCGC+GGG | 0.641251 | 2.4:+37341890 | None:intergenic |
| CTCATGAAATTTGATATGGG+TGG | 0.641407 | 2.4:-37338178 | MS.gene84413:CDS |
| GGATACTGATACTGATGTGG+CGG | 0.642793 | 2.4:-37341548 | MS.gene84413:CDS |
| GGGGTGAGTGAAGCCAAGAG+TGG | 0.643443 | 2.4:+37341848 | None:intergenic |
| ACTGCCGCATTTAAAACCCT+CGG | 0.643946 | 2.4:-37341277 | MS.gene84413:CDS |
| AGTGGAACAGGTATGAGACC+CGG | 0.645701 | 2.4:-37334986 | MS.gene84413:CDS |
| TTTGATGCTTCTGATGTGAG+CGG | 0.646083 | 2.4:-37332045 | MS.gene84413:CDS |
| TGATGTGGCGGAATGGAAAG+GGG | 0.646316 | 2.4:-37341536 | MS.gene84413:CDS |
| CACAGATGAATAAACTGAGG+AGG | 0.647289 | 2.4:+37340008 | None:intergenic |
| TGATATGGGTGGATCAGCTG+CGG | 0.648554 | 2.4:-37338167 | MS.gene84413:CDS |
| ACAACACAGATGCTGAGGGT+AGG | 0.654335 | 2.4:-37334043 | MS.gene84413:CDS |
| CCTGGTGTGAGCACATTAGG+CGG | 0.655495 | 2.4:+37340965 | None:intergenic |
| GAAGGATACTGATACTGATG+TGG | 0.662024 | 2.4:-37341551 | MS.gene84413:CDS |
| GTGAAGCCAAGAGTGGCGCG+AGG | 0.668718 | 2.4:+37341855 | None:intergenic |
| AACAAACGCACGGACCTTGG+GGG | 0.670089 | 2.4:+37341812 | None:intergenic |
| TGATGCTTCTGATGTGAGCG+GGG | 0.674520 | 2.4:-37332043 | MS.gene84413:CDS |
| GTATGCTTGTAACCAAGGTG+TGG | 0.676182 | 2.4:-37333997 | MS.gene84413:CDS |
| GATTGCAGAAGCAATGTTAG+GGG | 0.690061 | 2.4:+37341171 | None:intergenic |
| TAACACAGATGAATAAACTG+AGG | 0.696832 | 2.4:+37340005 | None:intergenic |
| GTTAACAACACAGATGCTGA+GGG | 0.698139 | 2.4:-37334047 | MS.gene84413:CDS |
| TGAGCGGGGAGAAACTATGG+AGG | 0.700569 | 2.4:-37332029 | MS.gene84413:CDS |
| CAGAAGCAACAGACTCACCG+AGG | 0.700899 | 2.4:+37341260 | None:intergenic |
| GTCAAACAAAGATGGCGTAG+CGG | 0.704194 | 2.4:+37341912 | None:intergenic |
| TGTTCCCACGACAGTCCCAG+TGG | 0.709007 | 2.4:+37341147 | None:intergenic |
| GCTGATATGCTGAACACCGG+TGG | 0.715179 | 2.4:-37331961 | MS.gene84413:CDS |
| AAACTGAGGAGGATTTGCTG+AGG | 0.722190 | 2.4:+37340019 | None:intergenic |
| AGAAGCAACAGACTCACCGA+GGG | 0.728785 | 2.4:+37341261 | None:intergenic |
| GTTGCTGATATGCTGAACAC+CGG | 0.743416 | 2.4:-37331964 | MS.gene84413:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 37331316 | 37342051 | 37331316 | ID=MS.gene84413 |
| chr2.4 | mRNA | 37331316 | 37342051 | 37331316 | ID=MS.gene84413.t1;Parent=MS.gene84413 |
| chr2.4 | exon | 37341827 | 37342051 | 37341827 | ID=MS.gene84413.t1.exon1;Parent=MS.gene84413.t1 |
| chr2.4 | CDS | 37341827 | 37342051 | 37341827 | ID=cds.MS.gene84413.t1;Parent=MS.gene84413.t1 |
| chr2.4 | exon | 37341159 | 37341587 | 37341159 | ID=MS.gene84413.t1.exon2;Parent=MS.gene84413.t1 |
| chr2.4 | CDS | 37341159 | 37341587 | 37341159 | ID=cds.MS.gene84413.t1;Parent=MS.gene84413.t1 |
| chr2.4 | exon | 37340966 | 37341125 | 37340966 | ID=MS.gene84413.t1.exon3;Parent=MS.gene84413.t1 |
| chr2.4 | CDS | 37340966 | 37341125 | 37340966 | ID=cds.MS.gene84413.t1;Parent=MS.gene84413.t1 |
| chr2.4 | exon | 37339939 | 37340164 | 37339939 | ID=MS.gene84413.t1.exon4;Parent=MS.gene84413.t1 |
| chr2.4 | CDS | 37339939 | 37340164 | 37339939 | ID=cds.MS.gene84413.t1;Parent=MS.gene84413.t1 |
| chr2.4 | exon | 37338117 | 37338243 | 37338117 | ID=MS.gene84413.t1.exon5;Parent=MS.gene84413.t1 |
| chr2.4 | CDS | 37338117 | 37338243 | 37338117 | ID=cds.MS.gene84413.t1;Parent=MS.gene84413.t1 |
| chr2.4 | exon | 37334949 | 37335044 | 37334949 | ID=MS.gene84413.t1.exon6;Parent=MS.gene84413.t1 |
| chr2.4 | CDS | 37334949 | 37335044 | 37334949 | ID=cds.MS.gene84413.t1;Parent=MS.gene84413.t1 |
| chr2.4 | exon | 37333992 | 37334069 | 37333992 | ID=MS.gene84413.t1.exon7;Parent=MS.gene84413.t1 |
| chr2.4 | CDS | 37333992 | 37334069 | 37333992 | ID=cds.MS.gene84413.t1;Parent=MS.gene84413.t1 |
| chr2.4 | exon | 37333614 | 37333674 | 37333614 | ID=MS.gene84413.t1.exon8;Parent=MS.gene84413.t1 |
| chr2.4 | CDS | 37333614 | 37333674 | 37333614 | ID=cds.MS.gene84413.t1;Parent=MS.gene84413.t1 |
| chr2.4 | exon | 37331918 | 37332105 | 37331918 | ID=MS.gene84413.t1.exon9;Parent=MS.gene84413.t1 |
| chr2.4 | CDS | 37331918 | 37332105 | 37331918 | ID=cds.MS.gene84413.t1;Parent=MS.gene84413.t1 |
| chr2.4 | exon | 37331316 | 37331444 | 37331316 | ID=MS.gene84413.t1.exon10;Parent=MS.gene84413.t1 |
| chr2.4 | CDS | 37331316 | 37331444 | 37331316 | ID=cds.MS.gene84413.t1;Parent=MS.gene84413.t1 |
| Gene Sequence |
| Protein sequence |
