AlfalfaGEDB | MS.gene91775

M. sativa cultivar XinJiangDaYe / MS.gene91775

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91775.t1	XP_003595279.1	96.7	455	15	0	1	455	1	455	2.90E-220	774.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91775.t1	Q9ZUF4	72.8	389	92	4	2	380	6	390	7.3e-156	552.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91775.t1	G7IGC8	96.7	455	15	0	1	455	1	455	2.1e-220	774.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene91775	-0.806874	6.65E-50	-1.69E-46
MS.gene049181	MS.gene91775	0.803677	3.11E-49	-1.69E-46
MS.gene049217	MS.gene91775	-0.811697	6.15E-51	-1.69E-46
MS.gene049232	MS.gene91775	-0.820663	6.09E-53	-1.69E-46
MS.gene049259	MS.gene91775	0.822534	2.25E-53	-1.69E-46
MS.gene049281	MS.gene91775	0.834741	2.52E-56	-1.69E-46
MS.gene049285	MS.gene91775	-0.819064	1.41E-52	-1.69E-46
MS.gene049320	MS.gene91775	-0.835756	1.39E-56	-1.69E-46
MS.gene049483	MS.gene91775	0.823361	1.44E-53	-1.69E-46
MS.gene049611	MS.gene91775	0.818366	2.03E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene004035	MS.gene91775	PPI
MS.gene004403	MS.gene91775	PPI
MS.gene010910	MS.gene91775	PPI
MS.gene022109	MS.gene91775	PPI
MS.gene024753	MS.gene91775	PPI
MS.gene027071	MS.gene91775	PPI
MS.gene027073	MS.gene91775	PPI
MS.gene027074	MS.gene91775	PPI
MS.gene027075	MS.gene91775	PPI
MS.gene027441	MS.gene91775	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91775.t1	MTR_2g041960	93.370	543	20	1	1	527	1	543	0.0	989
MS.gene91775.t1	MTR_4g125260	65.878	507	95	8	1	434	1	502	0.0	632
MS.gene91775.t1	MTR_1g015020	67.448	384	115	4	2	380	6	384	0.0	531
MS.gene91775.t1	MTR_3g105320	65.617	381	128	3	2	380	5	384	1.34e-180	513
MS.gene91775.t1	MTR_8g020920	59.080	435	168	5	2	433	5	432	4.27e-171	492
MS.gene91775.t1	MTR_5g026370	67.619	315	100	2	53	367	67	379	4.45e-157	454
MS.gene91775.t1	MTR_7g074610	70.627	303	89	0	58	360	70	372	1.24e-154	449
MS.gene91775.t1	MTR_8g088410	61.877	341	127	3	47	384	39	379	4.45e-147	427
MS.gene91775.t1	MTR_8g100155	61.584	341	120	2	22	360	21	352	1.78e-144	421
MS.gene91775.t1	MTR_7g009320	60.172	349	127	6	29	372	78	419	2.98e-142	419

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91775.t1	AT2G05940	65.385	468	128	8	2	455	6	453	0.0	586
MS.gene91775.t1	AT5G35580	69.029	381	110	4	2	375	6	385	0.0	541
MS.gene91775.t1	AT5G35580	70.270	370	103	3	13	375	4	373	0.0	538
MS.gene91775.t1	AT2G26290	62.817	355	128	1	13	363	18	372	6.38e-164	472
MS.gene91775.t1	AT5G01020	66.566	332	108	1	39	367	26	357	3.68e-155	449
MS.gene91775.t1	AT1G72540	53.641	412	178	5	1	403	1	408	3.47e-152	443
MS.gene91775.t1	AT1G61590	61.976	334	123	2	37	367	55	387	2.17e-149	435
MS.gene91775.t1	AT5G15080	57.641	373	146	6	7	372	71	438	1.58e-138	409
MS.gene91775.t1	AT5G56460	60.882	340	120	4	31	360	24	360	2.01e-137	404
MS.gene91775.t1	AT2G07180	60.443	316	125	0	49	364	60	375	8.02e-137	403

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Find 124 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTCTGACTTTGGGT+TGG	0.547912	2.1:-49719084	MS.gene91775:CDS
AAACAAATAAGGAGAGGAGG+AGG	0.463675	2.1:-49717703	MS.gene91775:CDS
AAAGCTATACACGTCACTCT+TGG	0.535793	2.1:+49718084	None:intergenic
AACAAATAAGGAGAGGAGGA+GGG	0.535240	2.1:-49717702	MS.gene91775:CDS
AACTCATAGGATTTCAATAG+AGG	0.469830	2.1:-49720834	MS.gene91775:CDS
AAGAGTGACGTGTATAGCTT+TGG	0.454904	2.1:-49718082	MS.gene91775:CDS
AAGGAAAATTAGCAAAATTA+TGG	0.227520	2.1:-49717954	MS.gene91775:CDS
AAGGGAATATGAAACAAATA+AGG	0.391424	2.1:-49717714	MS.gene91775:CDS
AATATCATAGGAATGGTCAT+AGG	0.485443	2.1:-49717670	MS.gene91775:CDS
AATATCCTATTAGCTTCACA+AGG	0.713595	2.1:+49719705	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCTGAACTTATTTCAG+TGG	-	chr2.1:49718347-49718366	MS.gene91775:intron	30.0%
AACTCATAGGATTTCAATAG+AGG	-	chr2.1:49717426-49717445	MS.gene91775:CDS	30.0%
AATATCATAGGAATGGTCAT+AGG	-	chr2.1:49720590-49720609	MS.gene91775:CDS	30.0%
AATCGAAATGGTAAAGAAAG+TGG	-	chr2.1:49720805-49720824	MS.gene91775:CDS	30.0%
ACAAGAATGAAAATTGCTGT+TGG	-	chr2.1:49718794-49718813	MS.gene91775:intron	30.0%
AGCACAAGTTACAAAATCAA+AGG	+	chr2.1:49718492-49718511	None:intergenic	30.0%
ATCGAAATGGTAAAGAAAGT+GGG	-	chr2.1:49720806-49720825	MS.gene91775:CDS	30.0%
ATTATGGATCCAAAACTTGA+AGG	-	chr2.1:49720322-49720341	MS.gene91775:intron	30.0%
ATTTCGATTTATGTGTGGTA+AGG	+	chr2.1:49720890-49720909	None:intergenic	30.0%
GGAAATAAACCTAGTAGATT+GGG	-	chr2.1:49720261-49720280	MS.gene91775:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	49717316	49720966	49717316	ID=MS.gene91775
chr2.1	mRNA	49717316	49720966	49717316	ID=MS.gene91775.t1;Parent=MS.gene91775
chr2.1	exon	49720583	49720966	49720583	ID=MS.gene91775.t1.exon1;Parent=MS.gene91775.t1
chr2.1	CDS	49720583	49720966	49720583	ID=cds.MS.gene91775.t1;Parent=MS.gene91775.t1
chr2.1	exon	49719630	49719765	49719630	ID=MS.gene91775.t1.exon2;Parent=MS.gene91775.t1
chr2.1	CDS	49719630	49719765	49719630	ID=cds.MS.gene91775.t1;Parent=MS.gene91775.t1
chr2.1	exon	49719378	49719514	49719378	ID=MS.gene91775.t1.exon3;Parent=MS.gene91775.t1
chr2.1	CDS	49719378	49719514	49719378	ID=cds.MS.gene91775.t1;Parent=MS.gene91775.t1
chr2.1	exon	49718994	49719117	49718994	ID=MS.gene91775.t1.exon4;Parent=MS.gene91775.t1
chr2.1	CDS	49718994	49719117	49718994	ID=cds.MS.gene91775.t1;Parent=MS.gene91775.t1
chr2.1	exon	49717316	49718118	49717316	ID=MS.gene91775.t1.exon5;Parent=MS.gene91775.t1
chr2.1	CDS	49717316	49718118	49717316	ID=cds.MS.gene91775.t1;Parent=MS.gene91775.t1

Gene Sequence

>MS.gene91775

ATGAAACTTAAATGGAAATCAATTTTCCCAGCAAGTTGTTTCAAAGGAGAGTATCCATCACCTAAACCAAAGAAAGTGGTAGCTACAAAGCCAAGAAGTGCTTCAACATCAACTCATAGGATTTCAATAGAGGAATTGAGCAATCCAAACGCGACCGAAGATTTATCGATTTCTCTAGCAGGATCTAATCTTTATGCCTTTACAGTTGCTGAGCTTAAGGTTATAACACAACAGTTTTCTTCTAGTAATCATCTTGGTGCTGGTGGGTTTGGTCCTGTTCATAAGGGGTTTATAGATGATAAGGTTAGGCCTGGTTTGAAGGCTCAATCTGTTGCTGTTAAACTCTTGGACTTAGAAAGCAAACAAGGTCATAAAGAGTGGTTGGTAAGTACTTTTTATTTTAACTTTTTTTACCATATCATGGTTTTACTAATAAGTGCTTTAATTTTAGATATTTAGTTTTTAAACTAGGATTAAATTTTGTTGTATCAATGTCTATGATTTAGTCATTAGAAATACTCAATATTTTGTTCAACTGATTTAAACTGACGGTGAAATTAGGATTAAATATAAGATTGAGTAGTTCAACTGATTTGAACTAAAGGTTAAAGATTTTGAAGGATATAGGTTCACACTTGGATGAAGGAAAAGACAATATTCATTTTAGCAAACAATATTAGTAGTTCGTGATATTGTAAAGAACATTGCTATATACAGCGAACTAATTGTTCCCGACTGCATTACTATGTGTTAAAACAAACCGTTTCAATACTTGACTTTAGCGAAAAACACGGTGTTTATCATTGAATAGCAATCATGTTGGTTCGTGATGTTATCGGGACGGTTTCTCTCAGGAAGTTTATCATTTTCCTATTGTAAATGACGTATATTATTGAACAATAAATTTAGTTATAGTAAACACTGCAATAGATTACGAGAATTAAAAGATGAGAGAGTAATAAATAATTACAATTGTCACTTATATGTCACCGCAAGAAAAAATAAAATTAGTAACCAAAACTGAAAAGGAAAAAAGCTGAACTTATTTCAGTGGTGTGAATGTGATTAAGAGACAAAAGTAGAAATAATGTCATGTGTACTATGCCTTAGATATTTTTAGAAAGAATCCTTTACGTAATAAGTGATTTTGACTTTTGAGGTTCGACTTCTAATCCTTTGATTTTGTAACTTGTGCTTACAGACTGAAGTTGTTGTACTGGGGCAATTAAGGCATCCACACCTTGTGAAGCTAATAGGATATTGTATTGAAGATGAACATAGACTTTTGGTATATGAATATTTACCAAGAGGCAGCTTGGAAAATCAATTATTTAGAAGTAAGATTTATTTATTATTATTACTATGTCACAATAATGTGATTAATTATCCTCTTTAATTTCATTATGTTTTGAAGTAGAAAATTAACCTAGTTTTTATTTATATTTTTTGTAGGATTTTCAGCATCACTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTTTAGCCTTTCTTCATGAAGCTGAGCAACCAGTCATTTTTAGAGATTTCAAAGCTTCAAATATCTTGTTAGATTCCGTACGTTCACACTTCATCTATTGTTCTATTGTTCGATTTATAGAATGATTTAATTCATATGCACGGTTATTAGTGTAAAAACATTACAGATACATTCAATCATATCTTACTACTATGCCACTAAAATACACAATTATCTATGTGGTGAATATGATTAAATGCATGTGTAAATTATAAAAATTACATCGGTGATTATAAACTCTTAATTGAAACATATTTCCTTAATTATTATACTCATTTTATTTTATTTTATTTTTCAGGATTATAATGCAAAACTCTCTGACTTTGGGTTGGCAAAAGATGGTCCAGAAGGAGATGACACCCACGTTTCAACAAGAGTTATGGGTACTCAAGGGTATGCTGCCCCAGAATATGTCATGACAGGTAAAAACAAACATTTTAGTTTAATGTTGTCTTAGCTTGTAGTTTATTGTGTTCAATGAACACATAATACACCCAAAAAAAATGTTTTAATAATTTTTTCTTATATTAAATAGTTATTAAAATGTAGTACTTGTGAAGCACTATCTCTTTTTTTATGAAGAGTTGTGAAGCACTGCCAAAAAAAATAACCTTCACTACCAAAAATATGAAGAGTTGTGAAGCACTATCTACAATATACTTTTGAGTCAAAAACAAATATAAAATATACTATACATAGAGCTCCCAAGAATAATGTACTTATTGTCCAAAAATGAATAATGTACTTGTGTAGTAGTTATTTTGTGTGCTTGTGTAGTAGTTACTTTTTTGGTCTTAATTATAGATTTACTAAACACAAAAATAGGAATAATTCACTTTAAATCATTTTTTTTTTTTTACAAAATTCACTTGTAAGGAAAAATTCACTTTAAATCATGTGATGTGTATTTTCGCTAATCATAGTCAAATAATCAAAGAATGCGGAAATTAAAAACTCATTCTTAAAAAGTCAACAACAAATAAAAAAAAAACTTAAACTCACAAAAAGACAAAAAAGATATTAAAGTTTGTTTTTTTGTTTTAATCACGCGGTTTACAAATAAAGGGATCTTAGTGATTCTGAGTTTGGTCGAATCAATCAGGCACACTTGAGTTTGATTATGGGACAAACCTTTAACCAAGTTTAACTTAAAATAAAATTAAGCTTTGTTTTGTTATGCTATACTAATTAATAATTATCGTGATAATGTGCTACATTAATGATGCCAGCATATGATTAACTGGAGTTGGAATTCTTATGACTAAATCAATTTTATTTTAATAATGTTTTCTTATAGGTCACTTGACGGCCAAGAGTGACGTGTATAGCTTTGGAGTAGTTTTGTTGGAATTGCTAACAGGGAGAAAGTCAGTAGACAAAAATCGTCCTCAAAGGGAAATAAACCTAGTAGATTGGGCAAGACCAATGTTAATTGATTCAAGGAAAATTAGCAAAATTATGGATCCAAAACTTGAAGGACAATATTCTGAAATGGGTGCTAAAAAAGCAGCTTCATTGGCTTATCAATGTCTTAGCCATAGACCAAAGAGTAGACCAACAATGAGCAATGTGGTTAAAATTTTGGAACCTCTACAAGATTTTGATGATATTCCAATTGGACCATTTGTTTACACTGCTCCAATTGATAATAGTGAAGTGGCTAGAGAAAAAGATCAAGCAAGGGAATATGAAACAAATAAGGAGAGGAGGAGGGAAAATGATAAATATCATAGGAATGGTCATAGGCATCATCCACTTAAATCTCCAAAGTCGCCAAGTCCTCAATCACAACCGCAATCACGGCCACACTCACGGCCACGACCACATCTGCAGATTGACAAGCACCGAAATGGTAGAGAAAGTGGGTCAAATTCTCCTTTGCCGCGCATAAATCGAAATGGTAGAGAAAGTGAGTCAAATTCTCCTTCGCCGCACATAAATCGAAATGGTAAAGAAAGTGGGTCAAATTCTCCTTTGTCGCGCATAAATCGAAATGGTAGAGAAAGTGGATCAAATTCTCCCTTACCACACATAAATCGAAATGGTAGAGGAAGTGGGTCAGATTCTCCCTCGCCACATAAAAAAAGCTATGAAAATTAG

Protein sequence

>MS.gene91775.t1

MKLKWKSIFPASCFKGEYPSPKPKKVVATKPRSASTSTHRISIEELSNPNATEDLSISLAGSNLYAFTVAELKVITQQFSSSNHLGAGGFGPVHKGFIDDKVRPGLKAQSVAVKLLDLESKQGHKEWLTEVVVLGQLRHPHLVKLIGYCIEDEHRLLVYEYLPRGSLENQLFRRFSASLPWSTRMKIAVGAAKGLAFLHEAEQPVIFRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAKSDVYSFGVVLLELLTGRKSVDKNRPQREINLVDWARPMLIDSRKISKIMDPKLEGQYSEMGAKKAASLAYQCLSHRPKSRPTMSNVVKILEPLQDFDDIPIGPFVYTAPIDNSEVAREKDQAREYETNKERRRENDKYHRNGHRHHPLKSPKSPSPQSQPQSRPHSRPRPHLQIDKHRNGRESGSNSPLPRINRNGRESESNSPSPHINRNGKESGSNSPLSRINRNGRESGSNSPLPHINRNGRGSGSDSPSPHKKSYEN