AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68738


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68738.t1 MTR_3g118070 99.318 440 3 0 1 440 29 468 0.0 895
MS.gene68738.t1 MTR_3g118070 99.270 411 3 0 30 440 1 411 0.0 837
MS.gene68738.t1 MTR_7g451450 34.448 299 169 10 48 333 87 371 9.77e-34 132
MS.gene68738.t1 MTR_7g072420 27.946 297 197 8 48 332 83 374 4.25e-21 95.9
MS.gene68738.t1 MTR_3g465800 27.759 299 197 7 47 332 74 366 6.93e-19 89.0
MS.gene68738.t1 MTR_3g465800 28.223 287 187 7 59 332 15 295 8.98e-19 88.2
MS.gene68738.t1 MTR_8g091660 25.373 335 219 11 47 363 82 403 2.09e-17 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68738.t1 AT3G48730 83.182 440 72 1 1 440 35 472 0.0 767
MS.gene68738.t1 AT5G63570 80.909 440 82 1 1 440 37 474 0.0 747
MS.gene68738.t1 AT5G63570 82.725 411 71 0 30 440 1 411 0.0 717
MS.gene68738.t1 AT5G46180 28.882 322 204 8 48 356 59 368 3.22e-30 122
MS.gene68738.t1 AT1G80600 29.773 309 170 10 48 333 77 361 8.35e-26 109
MS.gene68738.t1 AT3G08860 26.667 315 206 11 48 346 83 388 2.05e-20 93.6
MS.gene68738.t1 AT3G08860 26.667 315 206 11 48 346 83 388 2.94e-20 93.2
MS.gene68738.t1 AT4G39660 25.519 337 216 11 47 363 77 398 8.56e-20 92.0
MS.gene68738.t1 AT4G39660 25.538 325 207 11 59 363 14 323 1.92e-19 90.1
MS.gene68738.t1 AT2G38400 25.444 338 214 10 47 363 79 399 2.36e-16 81.6
MS.gene68738.t1 AT2G38400 25.444 338 214 10 47 363 79 399 2.39e-16 81.6

Find 144 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGTTTGCTAAGTTCTTC+TGG 0.125787 3.2:+93116578 MS.gene68738:CDS
TCTTGGGGTCCTGCAATTAT+TGG 0.214742 3.2:+93115541 MS.gene68738:CDS
TTGACGGAATCAATGATAAT+TGG 0.243448 3.2:-93115466 None:intergenic
TGGAGGTAGGAGAGATATTA+TGG 0.268158 3.2:+93116279 MS.gene68738:CDS
CATTGACTATGTTGGTTCTT+GGG 0.275476 3.2:+93115525 MS.gene68738:CDS
GTTTCATTGGTGGCAGCTTT+AGG 0.281598 3.2:-93115956 None:intergenic
CTGCTGCTGAGAAGGTCTTT+AGG 0.282740 3.2:+93116698 MS.gene68738:CDS
TGCTGCTGAGAAGGTCTTTA+GGG 0.286640 3.2:+93116699 MS.gene68738:CDS
CTTGATGATCTTCTCTTTGC+CGG 0.295779 3.2:-93115840 None:intergenic
CGCAAGGAACTAAGAAAATC+AGG 0.299535 3.2:-93116100 None:intergenic
ATATGTGGTGGGCATATAAA+TGG 0.309935 3.2:+93116487 MS.gene68738:CDS
TTCCCCAGAGTTGTTATATC+AGG 0.310573 3.2:-93116223 None:intergenic
ACATTGACTATGTTGGTTCT+TGG 0.314847 3.2:+93115524 MS.gene68738:CDS
CAAGTTTGCTAAGTTCTTCT+GGG 0.335783 3.2:+93116579 MS.gene68738:CDS
AGAAACTCTGAAGCGTATTA+AGG 0.338134 3.2:+93116378 MS.gene68738:CDS
GAACCTGTTGTTGGAAATTC+CGG 0.340485 3.2:+93116061 MS.gene68738:CDS
GTTAGCAGAAGGTGTCTATT+TGG 0.340874 3.2:+93116606 MS.gene68738:CDS
GAATACTTGGACAAAATTAC+AGG 0.342820 3.2:+93116415 MS.gene68738:CDS
ATGGTCAGATTTGTCAATTC+CGG 0.345817 3.2:+93115773 MS.gene68738:CDS
GGCATATAAATGGGATGTTT+GGG 0.350134 3.2:+93116497 MS.gene68738:CDS
GGGCATATAAATGGGATGTT+TGG 0.352503 3.2:+93116496 MS.gene68738:CDS
GCACCTTCACAGTTTGAGGC+TGG 0.354758 3.2:+93116628 MS.gene68738:CDS
TCCAAGTATTCATAAGTTCC+TGG 0.359322 3.2:-93116403 None:intergenic
TTAGGAACACCAGGGGAATC+AGG 0.388149 3.2:-93115938 None:intergenic
TTTGGCACCTTCACAGTTTG+AGG 0.388856 3.2:+93116624 MS.gene68738:CDS
GGCTGTAAGGGTTTCATTGG+TGG 0.391375 3.2:-93115966 None:intergenic
GAACTAAGAAAATCAGGTTT+AGG 0.397600 3.2:-93116094 None:intergenic
TACGGCTATCTCTCCTTTGT+TGG 0.403214 3.2:-93116029 None:intergenic
TATTGGTCACGCTGATGATC+AGG 0.409676 3.2:+93115558 MS.gene68738:CDS
TGCTGTTCCCAGCATTGAAA+TGG 0.417543 3.2:+93115754 MS.gene68738:CDS
CCAGAAGAACTTAGCAAACT+TGG 0.420091 3.2:-93116578 None:intergenic
TTTCTTGTTAAGGCAGGTAG+TGG 0.428022 3.2:+93115896 MS.gene68738:CDS
ATGAAGAAAGGAACCAGCTT+TGG 0.429438 3.2:+93115686 MS.gene68738:CDS
GACGTTGAGTGGGAATCCTT+TGG 0.430505 3.2:+93116339 MS.gene68738:CDS
GTCTTCCTCGAACCTGTTGT+TGG 0.431603 3.2:+93116052 MS.gene68738:CDS
CACCTTCACAGTTTGAGGCT+GGG 0.433643 3.2:+93116629 MS.gene68738:CDS
CTACCTGCCTTAACAAGAAA+AGG 0.436782 3.2:-93115893 None:intergenic
GGTTTGCCAGTAGGTGCATA+TGG 0.445263 3.2:+93116259 MS.gene68738:CDS
AAACCGGAATTTCCAACAAC+AGG 0.445497 3.2:-93116064 None:intergenic
ACAACTCTGGGGAAGATCAT+TGG 0.450763 3.2:+93116232 MS.gene68738:CDS
CCACATGCGAGCACCTTTGA+CGG 0.452870 3.2:-93115482 None:intergenic
ACTGGATTCCGTTTGTCGTA+TGG 0.457113 3.2:+93116172 MS.gene68738:CDS
TCAGCGTGACCAATAATTGC+AGG 0.459493 3.2:-93115550 None:intergenic
ATTGACTATGTTGGTTCTTG+GGG 0.459541 3.2:+93115526 MS.gene68738:CDS
TGAGGCTGGGTTCACCAGCT+TGG 0.460390 3.2:+93116642 MS.gene68738:CDS
AAATCTGACCATTTCAATGC+TGG 0.463786 3.2:-93115762 None:intergenic
CGCCTTGCCCGTGCTTATAC+CGG 0.463976 3.2:+93115821 MS.gene68738:CDS
AACTCCTGATATAACAACTC+TGG 0.465327 3.2:+93116219 MS.gene68738:CDS
CAGGGGAATCAGGAAGTCCT+AGG 0.466845 3.2:-93115928 None:intergenic
TTTGATTAGGAATTGATGCC+TGG 0.467656 3.2:+93115397 MS.gene68738:intron
ACTCCTGATATAACAACTCT+GGG 0.468947 3.2:+93116220 MS.gene68738:CDS
ATTATCATTGATTCCGTCAA+AGG 0.468966 3.2:+93115469 MS.gene68738:CDS
ATGGAGACCGTGGCTCCGGC+TGG 0.468994 3.2:+93116298 MS.gene68738:CDS
AGAGAAGATCATCAAGTTTG+AGG 0.471292 3.2:+93115847 MS.gene68738:CDS
ATTACAGGTGAGCTTGTTCA+AGG 0.477356 3.2:+93116430 MS.gene68738:CDS
AAGACAAGGTGCACCAAAGC+TGG 0.477394 3.2:-93115699 None:intergenic
TTCCGGCACTGAAGCATGCA+TGG 0.479996 3.2:+93115790 MS.gene68738:CDS
GAGAAGATCATCAAGTTTGA+GGG 0.481387 3.2:+93115848 MS.gene68738:CDS
GACCATTGCTGCTGCTGAGA+AGG 0.485730 3.2:+93116690 MS.gene68738:CDS
CTCTTTGCCGGTATAAGCAC+GGG 0.486208 3.2:-93115828 None:intergenic
TTCGGTGCTGGGCTTCTGGT+CGG 0.486793 3.2:-93115233 None:intergenic
GTTCAAGGCATTGTTGAAGC+TGG 0.489925 3.2:+93116445 MS.gene68738:CDS
AACCAACATAGTCAATGTAT+TGG 0.491453 3.2:-93115519 None:intergenic
ACTGATTTGAAAGCACGAAC+AGG 0.495762 3.2:-93115433 None:intergenic
GTGTTTGATGAAGTTATGAC+TGG 0.497336 3.2:+93116154 MS.gene68738:CDS
GCCAGGAACTTATGAATACT+TGG 0.499909 3.2:+93116402 MS.gene68738:CDS
GCTGGACCTATGTACCAGGC+TGG 0.502027 3.2:+93116316 MS.gene68738:CDS
AACAGCAGCAAAGTCATTGA+AGG 0.503512 3.2:-93115990 None:intergenic
AATCCTTTGGCAATGACTGC+AGG 0.505080 3.2:+93116352 MS.gene68738:CDS
GTTCGTGCTTTCAAATCAGT+TGG 0.507920 3.2:+93115436 MS.gene68738:CDS
GAGCACCTCCATACGACAAA+CGG 0.508625 3.2:-93116180 None:intergenic
GTTGAAGCTGGTAAGAAGGC+AGG 0.509704 3.2:+93116457 MS.gene68738:CDS
AACCAATACATTGACTATGT+TGG 0.510475 3.2:+93115517 MS.gene68738:CDS
ACAGGAGAGTTCACACCTCC+AGG 0.510938 3.2:-93115415 None:intergenic
TATTATGGAGACCGTGGCTC+CGG 0.513114 3.2:+93116294 MS.gene68738:CDS
AACGTCCCAGCCTGGTACAT+AGG 0.518158 3.2:-93116322 None:intergenic
GCCTGGTACATAGGTCCAGC+CGG 0.518203 3.2:-93116313 None:intergenic
TTCTGGGGTATGTTAGCAGA+AGG 0.519712 3.2:+93116595 MS.gene68738:CDS
GACCTTCTCAGCAGCAGCAA+TGG 0.522852 3.2:-93116692 None:intergenic
CTAGGACTTCCTGATTCCCC+TGG 0.524552 3.2:+93115929 MS.gene68738:CDS
GGTGCTGGGCTTCTGGTCGG+TGG 0.527286 3.2:-93115230 None:intergenic
TGAAAACACTCTAGCTGAGA+TGG 0.530589 3.2:+93115724 MS.gene68738:CDS
ACCCATGCATGCTTCAGTGC+CGG 0.530882 3.2:-93115792 None:intergenic
CTACCTCCATATGCACCTAC+TGG 0.530999 3.2:-93116265 None:intergenic
CGTGCTTTCAAATCAGTTGG+TGG 0.531486 3.2:+93115439 MS.gene68738:CDS
CCGTCAAAGGTGCTCGCATG+TGG 0.532480 3.2:+93115482 MS.gene68738:CDS
TACCAGGCTGGGACGTTGAG+TGG 0.532692 3.2:+93116328 MS.gene68738:CDS
GAGAAGGGCATTGTTCTCCT+TGG 0.539822 3.2:-93116131 None:intergenic
CATTGTTGAAGCTGGTAAGA+AGG 0.540418 3.2:+93116453 MS.gene68738:CDS
AGGTTTAGGAGTAATGAAAC+CGG 0.540434 3.2:-93116080 None:intergenic
GGAGGTGCTCAACAATACTT+TGG 0.540803 3.2:+93116193 MS.gene68738:CDS
CTGAAGCGTATTAAGGAGCC+AGG 0.542721 3.2:+93116385 MS.gene68738:CDS
CTGGACCTATGTACCAGGCT+GGG 0.542962 3.2:+93116317 MS.gene68738:CDS
AATTTCCAACAACAGGTTCG+AGG 0.544211 3.2:-93116057 None:intergenic
TGCCGGTATAAGCACGGGCA+AGG 0.545023 3.2:-93115823 None:intergenic
ATCAGAAGTATGTGCCAAGC+TGG 0.549286 3.2:-93116656 None:intergenic
TCCGGCTGGACCTATGTACC+AGG 0.550164 3.2:+93116312 MS.gene68738:CDS
AATCTGACCATTTCAATGCT+GGG 0.551104 3.2:-93115761 None:intergenic
GCTCGCATGTGGGACATTGA+TGG 0.552562 3.2:+93115493 MS.gene68738:CDS
GGTAGTGGAGTTGCCACCCT+AGG 0.552592 3.2:+93115911 MS.gene68738:CDS
TCCCACTCAACGTCCCAGCC+TGG 0.554590 3.2:-93116330 None:intergenic
CTTGCTGAGACAATGAAGAA+AGG 0.555611 3.2:+93115674 MS.gene68738:CDS
TCTCTTTGCCGGTATAAGCA+CGG 0.568722 3.2:-93115829 None:intergenic
CATAGGTCCAGCCGGAGCCA+CGG 0.570397 3.2:-93116305 None:intergenic
GTGGCAGCTTTAGGAACACC+AGG 0.571077 3.2:-93115947 None:intergenic
ACAGCAGCAAAGTCATTGAA+GGG 0.578728 3.2:-93115989 None:intergenic
GCAGGGCATGCAATATGTGG+TGG 0.581592 3.2:+93116475 MS.gene68738:CDS
TATGTGGTGGGCATATAAAT+GGG 0.582602 3.2:+93116488 MS.gene68738:CDS
AAGTTTGCTAAGTTCTTCTG+GGG 0.584115 3.2:+93116580 MS.gene68738:CDS
TAACTTCATCAAACACGAGA+AGG 0.585499 3.2:-93116147 None:intergenic
TTGAAGCTGGTAAGAAGGCA+GGG 0.585619 3.2:+93116458 MS.gene68738:CDS
AGGGGAATCAGGAAGTCCTA+GGG 0.587377 3.2:-93115927 None:intergenic
GGATTCCGTTTGTCGTATGG+AGG 0.588634 3.2:+93116175 MS.gene68738:CDS
AAGTTTGAGGGATGTTATCA+CGG 0.591307 3.2:+93115860 MS.gene68738:CDS
AAGGCAGGGCATGCAATATG+TGG 0.593656 3.2:+93116472 MS.gene68738:CDS
CTTCATTGTCTCAGCAAGAG+CGG 0.594962 3.2:-93115669 None:intergenic
ATGCCTGCAGTCATTGCCAA+AGG 0.596171 3.2:-93116355 None:intergenic
ACTCTGGGGAAGATCATTGG+AGG 0.600178 3.2:+93116235 MS.gene68738:CDS
CAGTAGGTGCATATGGAGGT+AGG 0.601307 3.2:+93116266 MS.gene68738:CDS
AGAAGCTTTCGCAGCTGCAA+AGG 0.604865 3.2:+93115279 MS.gene68738:CDS
TCCGGCACTGAAGCATGCAT+GGG 0.605633 3.2:+93115791 MS.gene68738:CDS
CAGGGCATGCAATATGTGGT+GGG 0.605835 3.2:+93116476 MS.gene68738:CDS
ACCAGGCTGGGACGTTGAGT+GGG 0.609650 3.2:+93116329 MS.gene68738:CDS
CTGGGGAAGATCATTGGAGG+GGG 0.612965 3.2:+93116238 MS.gene68738:CDS
AACTTCATCAAACACGAGAA+GGG 0.614126 3.2:-93116146 None:intergenic
AACAGGTTCGAGGAAGACTA+CGG 0.621214 3.2:-93116047 None:intergenic
CGTCAAAGGTGCTCGCATGT+GGG 0.625959 3.2:+93115483 MS.gene68738:CDS
AACCCAGCCTCAAACTGTGA+AGG 0.634803 3.2:-93116631 None:intergenic
AAGATCTTTGAAGCCAACAA+AGG 0.638698 3.2:+93116016 MS.gene68738:CDS
GCATCTGTGAAATTGTACAC+AGG 0.641026 3.2:-93116538 None:intergenic
GGAATCAGGAAGTCCTAGGG+TGG 0.643441 3.2:-93115924 None:intergenic
CGGTATAAGCACGGGCAAGG+CGG 0.653099 3.2:-93115820 None:intergenic
CAGCAGCAAAGTCATTGAAG+GGG 0.654908 3.2:-93115988 None:intergenic
GAGAGATATTATGGAGACCG+TGG 0.661183 3.2:+93116288 MS.gene68738:CDS
TCTGGGGAAGATCATTGGAG+GGG 0.662523 3.2:+93116237 MS.gene68738:CDS
AGCAGCAAAGTCATTGAAGG+GGG 0.664856 3.2:-93115987 None:intergenic
CTCTGGGGAAGATCATTGGA+GGG 0.675119 3.2:+93116236 MS.gene68738:CDS
TAACAAGAAAAGGATCAGCA+TGG 0.678181 3.2:-93115883 None:intergenic
TTCCTTGCGCAAAATCACCA+AGG 0.686509 3.2:+93116114 MS.gene68738:CDS
TTGCCAGTAGGTGCATATGG+AGG 0.697062 3.2:+93116262 MS.gene68738:CDS
GGCAGCTTTAGGAACACCAG+GGG 0.703847 3.2:-93115945 None:intergenic
TGGCAGCTTTAGGAACACCA+GGG 0.708271 3.2:-93115946 None:intergenic
GATTAGGAATTGATGCCTGG+AGG 0.717601 3.2:+93115400 MS.gene68738:intron
CTCCTGATATAACAACTCTG+GGG 0.744293 3.2:+93116221 MS.gene68738:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAACATAAAAGTTTGA+AGG - chr3.2:93115638-93115657 None:intergenic 15.0%
!!! AAACTTTTATGTTTAATTTC+AGG + chr3.2:93115640-93115659 MS.gene68738:intron 15.0%
!!! ATGTAATAATCGATTTGATT+AGG + chr3.2:93115384-93115403 MS.gene68738:intron 20.0%
! AATATATGAGAGAATTGAAG+AGG - chr3.2:93115603-93115622 None:intergenic 25.0%
AACCAACATAGTCAATGTAT+TGG - chr3.2:93115522-93115541 None:intergenic 30.0%
GAACTAAGAAAATCAGGTTT+AGG - chr3.2:93116097-93116116 None:intergenic 30.0%
GAATACTTGGACAAAATTAC+AGG + chr3.2:93116415-93116434 MS.gene68738:CDS 30.0%
TTGACGGAATCAATGATAAT+TGG - chr3.2:93115469-93115488 None:intergenic 30.0%
! AACCAATACATTGACTATGT+TGG + chr3.2:93115517-93115536 MS.gene68738:CDS 30.0%
!! ATTATCATTGATTCCGTCAA+AGG + chr3.2:93115469-93115488 MS.gene68738:CDS 30.0%
AAATCTGACCATTTCAATGC+TGG - chr3.2:93115765-93115784 None:intergenic 35.0%
AACTCCTGATATAACAACTC+TGG + chr3.2:93116219-93116238 MS.gene68738:CDS 35.0%
AACTTCATCAAACACGAGAA+GGG - chr3.2:93116149-93116168 None:intergenic 35.0%
AAGTTTGAGGGATGTTATCA+CGG + chr3.2:93115860-93115879 MS.gene68738:CDS 35.0%
AATCTGACCATTTCAATGCT+GGG - chr3.2:93115764-93115783 None:intergenic 35.0%
ACTCCTGATATAACAACTCT+GGG + chr3.2:93116220-93116239 MS.gene68738:CDS 35.0%
AGAGAAGATCATCAAGTTTG+AGG + chr3.2:93115847-93115866 MS.gene68738:CDS 35.0%
AGGTTTAGGAGTAATGAAAC+CGG - chr3.2:93116083-93116102 None:intergenic 35.0%
ATGGTCAGATTTGTCAATTC+CGG + chr3.2:93115773-93115792 MS.gene68738:CDS 35.0%
GAGAAGATCATCAAGTTTGA+GGG + chr3.2:93115848-93115867 MS.gene68738:CDS 35.0%
GGCATATAAATGGGATGTTT+GGG + chr3.2:93116497-93116516 MS.gene68738:CDS 35.0%
GTGTTTGATGAAGTTATGAC+TGG + chr3.2:93116154-93116173 MS.gene68738:CDS 35.0%
TAACAAGAAAAGGATCAGCA+TGG - chr3.2:93115886-93115905 None:intergenic 35.0%
TAACTTCATCAAACACGAGA+AGG - chr3.2:93116150-93116169 None:intergenic 35.0%
TCCAAGTATTCATAAGTTCC+TGG - chr3.2:93116406-93116425 None:intergenic 35.0%
TTTGATTAGGAATTGATGCC+TGG + chr3.2:93115397-93115416 MS.gene68738:intron 35.0%
! TGCTGATCCTTTTCTTGTTA+AGG + chr3.2:93115886-93115905 MS.gene68738:CDS 35.0%
! TTTGCGAAGAGTGAGTTTTT+CGG - chr3.2:93115254-93115273 None:intergenic 35.0%
!! AAGATCTTTGAAGCCAACAA+AGG + chr3.2:93116016-93116035 MS.gene68738:CDS 35.0%
!! AAGTTTGCTAAGTTCTTCTG+GGG + chr3.2:93116580-93116599 MS.gene68738:CDS 35.0%
!! ACATTGACTATGTTGGTTCT+TGG + chr3.2:93115524-93115543 MS.gene68738:CDS 35.0%
!! AGAAACTCTGAAGCGTATTA+AGG + chr3.2:93116378-93116397 MS.gene68738:CDS 35.0%
!! AGAGTGTTTTCAAGAAGACA+AGG - chr3.2:93115716-93115735 None:intergenic 35.0%
!! ATATGTGGTGGGCATATAAA+TGG + chr3.2:93116487-93116506 MS.gene68738:CDS 35.0%
!! ATTGACTATGTTGGTTCTTG+GGG + chr3.2:93115526-93115545 MS.gene68738:CDS 35.0%
!! CAAGTTTGCTAAGTTCTTCT+GGG + chr3.2:93116579-93116598 MS.gene68738:CDS 35.0%
!! CATTGACTATGTTGGTTCTT+GGG + chr3.2:93115525-93115544 MS.gene68738:CDS 35.0%
!! TATGTGGTGGGCATATAAAT+GGG + chr3.2:93116488-93116507 MS.gene68738:CDS 35.0%
!! TTTGGGTTTTTCTTCACAGA+AGG + chr3.2:93116514-93116533 MS.gene68738:CDS 35.0%
AAACCGGAATTTCCAACAAC+AGG - chr3.2:93116067-93116086 None:intergenic 40.0%
AACAGCAGCAAAGTCATTGA+AGG - chr3.2:93115993-93116012 None:intergenic 40.0%
AATTTCCAACAACAGGTTCG+AGG - chr3.2:93116060-93116079 None:intergenic 40.0%
ACAGCAGCAAAGTCATTGAA+GGG - chr3.2:93115992-93116011 None:intergenic 40.0%
ATGAAGAAAGGAACCAGCTT+TGG + chr3.2:93115686-93115705 MS.gene68738:CDS 40.0%
CATTGTTGAAGCTGGTAAGA+AGG + chr3.2:93116453-93116472 MS.gene68738:CDS 40.0%
CCAGAAGAACTTAGCAAACT+TGG - chr3.2:93116581-93116600 None:intergenic 40.0%
CGCAAGGAACTAAGAAAATC+AGG - chr3.2:93116103-93116122 None:intergenic 40.0%
CTACCTGCCTTAACAAGAAA+AGG - chr3.2:93115896-93115915 None:intergenic 40.0%
CTCCTGATATAACAACTCTG+GGG + chr3.2:93116221-93116240 MS.gene68738:CDS 40.0%
CTTGCTGAGACAATGAAGAA+AGG + chr3.2:93115674-93115693 MS.gene68738:CDS 40.0%
GAACCTGTTGTTGGAAATTC+CGG + chr3.2:93116061-93116080 MS.gene68738:CDS 40.0%
GCATCTGTGAAATTGTACAC+AGG - chr3.2:93116541-93116560 None:intergenic 40.0%
GCCAGGAACTTATGAATACT+TGG + chr3.2:93116402-93116421 MS.gene68738:CDS 40.0%
GGGCATATAAATGGGATGTT+TGG + chr3.2:93116496-93116515 MS.gene68738:CDS 40.0%
GTTCGTGCTTTCAAATCAGT+TGG + chr3.2:93115436-93115455 MS.gene68738:CDS 40.0%
TGAAAACACTCTAGCTGAGA+TGG + chr3.2:93115724-93115743 MS.gene68738:CDS 40.0%
TGGAGGTAGGAGAGATATTA+TGG + chr3.2:93116279-93116298 MS.gene68738:CDS 40.0%
TTCCCCAGAGTTGTTATATC+AGG - chr3.2:93116226-93116245 None:intergenic 40.0%
TTTCTTGTTAAGGCAGGTAG+TGG + chr3.2:93115896-93115915 MS.gene68738:CDS 40.0%
! ATTACAGGTGAGCTTGTTCA+AGG + chr3.2:93116430-93116449 MS.gene68738:CDS 40.0%
! CTTGATGATCTTCTCTTTGC+CGG - chr3.2:93115843-93115862 None:intergenic 40.0%
! GATCCTTTTCTTGTTAAGGC+AGG + chr3.2:93115890-93115909 MS.gene68738:CDS 40.0%
!! ACTGATTTGAAAGCACGAAC+AGG - chr3.2:93115436-93115455 None:intergenic 40.0%
!! CCAAGTTTGCTAAGTTCTTC+TGG + chr3.2:93116578-93116597 MS.gene68738:CDS 40.0%
!! GTTAGCAGAAGGTGTCTATT+TGG + chr3.2:93116606-93116625 MS.gene68738:CDS 40.0%
AACAGGTTCGAGGAAGACTA+CGG - chr3.2:93116050-93116069 None:intergenic 45.0%
AATCCTTTGGCAATGACTGC+AGG + chr3.2:93116352-93116371 MS.gene68738:CDS 45.0%
ACTGGATTCCGTTTGTCGTA+TGG + chr3.2:93116172-93116191 MS.gene68738:CDS 45.0%
AGCAGCAAAGTCATTGAAGG+GGG - chr3.2:93115990-93116009 None:intergenic 45.0%
CAGCAGCAAAGTCATTGAAG+GGG - chr3.2:93115991-93116010 None:intergenic 45.0%
CGTGCTTTCAAATCAGTTGG+TGG + chr3.2:93115439-93115458 MS.gene68738:CDS 45.0%
CTTCATTGTCTCAGCAAGAG+CGG - chr3.2:93115672-93115691 None:intergenic 45.0%
GAGAGATATTATGGAGACCG+TGG + chr3.2:93116288-93116307 MS.gene68738:CDS 45.0%
GATTAGGAATTGATGCCTGG+AGG + chr3.2:93115400-93115419 MS.gene68738:intron 45.0%
TACGGCTATCTCTCCTTTGT+TGG - chr3.2:93116032-93116051 None:intergenic 45.0%
TATTGGTCACGCTGATGATC+AGG + chr3.2:93115558-93115577 MS.gene68738:CDS 45.0%
TCAGCGTGACCAATAATTGC+AGG - chr3.2:93115553-93115572 None:intergenic 45.0%
TCTCTTTGCCGGTATAAGCA+CGG - chr3.2:93115832-93115851 None:intergenic 45.0%
TCTTGGGGTCCTGCAATTAT+TGG + chr3.2:93115541-93115560 MS.gene68738:CDS 45.0%
TGCTGCTGAGAAGGTCTTTA+GGG + chr3.2:93116699-93116718 MS.gene68738:CDS 45.0%
TTCCTTGCGCAAAATCACCA+AGG + chr3.2:93116114-93116133 MS.gene68738:CDS 45.0%
TTGAAGCTGGTAAGAAGGCA+GGG + chr3.2:93116458-93116477 MS.gene68738:CDS 45.0%
TTTGGCACCTTCACAGTTTG+AGG + chr3.2:93116624-93116643 MS.gene68738:CDS 45.0%
! ACAACTCTGGGGAAGATCAT+TGG + chr3.2:93116232-93116251 MS.gene68738:CDS 45.0%
! ATCAGAAGTATGTGCCAAGC+TGG - chr3.2:93116659-93116678 None:intergenic 45.0%
! GTTTCATTGGTGGCAGCTTT+AGG - chr3.2:93115959-93115978 None:intergenic 45.0%
! TGCTGTTCCCAGCATTGAAA+TGG + chr3.2:93115754-93115773 MS.gene68738:CDS 45.0%
!! AAGAGTGAGTTTTTCGGTGC+TGG - chr3.2:93115248-93115267 None:intergenic 45.0%
!! GGAGGTGCTCAACAATACTT+TGG + chr3.2:93116193-93116212 MS.gene68738:CDS 45.0%
!! GTTCAAGGCATTGTTGAAGC+TGG + chr3.2:93116445-93116464 MS.gene68738:CDS 45.0%
!! TTCTGGGGTATGTTAGCAGA+AGG + chr3.2:93116595-93116614 MS.gene68738:CDS 45.0%
!!! AGAGTGAGTTTTTCGGTGCT+GGG - chr3.2:93115247-93115266 None:intergenic 45.0%
AACCCAGCCTCAAACTGTGA+AGG - chr3.2:93116634-93116653 None:intergenic 50.0%
AAGACAAGGTGCACCAAAGC+TGG - chr3.2:93115702-93115721 None:intergenic 50.0%
AAGGCAGGGCATGCAATATG+TGG + chr3.2:93116472-93116491 MS.gene68738:CDS 50.0%
AGAAGCTTTCGCAGCTGCAA+AGG + chr3.2:93115279-93115298 MS.gene68738:CDS 50.0%
AGGGGAATCAGGAAGTCCTA+GGG - chr3.2:93115930-93115949 None:intergenic 50.0%
AGTCATTGAAGGGGGCTGTA+AGG - chr3.2:93115982-93116001 None:intergenic 50.0%
ATGCCTGCAGTCATTGCCAA+AGG - chr3.2:93116358-93116377 None:intergenic 50.0%
CAGGGCATGCAATATGTGGT+GGG + chr3.2:93116476-93116495 MS.gene68738:CDS 50.0%
CAGTAGGTGCATATGGAGGT+AGG + chr3.2:93116266-93116285 MS.gene68738:CDS 50.0%
CTACCTCCATATGCACCTAC+TGG - chr3.2:93116268-93116287 None:intergenic 50.0%
CTCTTTGCCGGTATAAGCAC+GGG - chr3.2:93115831-93115850 None:intergenic 50.0%
CTGAAGCGTATTAAGGAGCC+AGG + chr3.2:93116385-93116404 MS.gene68738:CDS 50.0%
CTGCTGCTGAGAAGGTCTTT+AGG + chr3.2:93116698-93116717 MS.gene68738:CDS 50.0%
GACGTTGAGTGGGAATCCTT+TGG + chr3.2:93116339-93116358 MS.gene68738:CDS 50.0%
GAGCACCTCCATACGACAAA+CGG - chr3.2:93116183-93116202 None:intergenic 50.0%
GGATTCCGTTTGTCGTATGG+AGG + chr3.2:93116175-93116194 MS.gene68738:CDS 50.0%
GGCTGTAAGGGTTTCATTGG+TGG - chr3.2:93115969-93115988 None:intergenic 50.0%
GGTTTGCCAGTAGGTGCATA+TGG + chr3.2:93116259-93116278 MS.gene68738:CDS 50.0%
GTCATTGAAGGGGGCTGTAA+GGG - chr3.2:93115981-93116000 None:intergenic 50.0%
GTCTTCCTCGAACCTGTTGT+TGG + chr3.2:93116052-93116071 MS.gene68738:CDS 50.0%
GTTGAAGCTGGTAAGAAGGC+AGG + chr3.2:93116457-93116476 MS.gene68738:CDS 50.0%
TATTATGGAGACCGTGGCTC+CGG + chr3.2:93116294-93116313 MS.gene68738:CDS 50.0%
TCTGGGGAAGATCATTGGAG+GGG + chr3.2:93116237-93116256 MS.gene68738:CDS 50.0%
TTAGGAACACCAGGGGAATC+AGG - chr3.2:93115941-93115960 None:intergenic 50.0%
TTGCCAGTAGGTGCATATGG+AGG + chr3.2:93116262-93116281 MS.gene68738:CDS 50.0%
! ACTCTGGGGAAGATCATTGG+AGG + chr3.2:93116235-93116254 MS.gene68738:CDS 50.0%
! CACCTTCACAGTTTGAGGCT+GGG + chr3.2:93116629-93116648 MS.gene68738:CDS 50.0%
! CTCTGGGGAAGATCATTGGA+GGG + chr3.2:93116236-93116255 MS.gene68738:CDS 50.0%
!! CTCCTTGGTGATTTTGCGCA+AGG - chr3.2:93116119-93116138 None:intergenic 50.0%
!! GAGAAGGGCATTGTTCTCCT+TGG - chr3.2:93116134-93116153 None:intergenic 50.0%
!! TGGCAGCTTTAGGAACACCA+GGG - chr3.2:93115949-93115968 None:intergenic 50.0%
AACGTCCCAGCCTGGTACAT+AGG - chr3.2:93116325-93116344 None:intergenic 55.0%
ACAGGAGAGTTCACACCTCC+AGG - chr3.2:93115418-93115437 None:intergenic 55.0%
ACCCATGCATGCTTCAGTGC+CGG - chr3.2:93115795-93115814 None:intergenic 55.0%
ATTGGAGGGGGTTTGCCAGT+AGG + chr3.2:93116250-93116269 MS.gene68738:CDS 55.0%
CAGGGGAATCAGGAAGTCCT+AGG - chr3.2:93115931-93115950 None:intergenic 55.0%
CCACATGCGAGCACCTTTGA+CGG - chr3.2:93115485-93115504 None:intergenic 55.0%
CTAGGACTTCCTGATTCCCC+TGG + chr3.2:93115929-93115948 MS.gene68738:CDS 55.0%
CTGGACCTATGTACCAGGCT+GGG + chr3.2:93116317-93116336 MS.gene68738:CDS 55.0%
CTGGGGAAGATCATTGGAGG+GGG + chr3.2:93116238-93116257 MS.gene68738:CDS 55.0%
GACCATTGCTGCTGCTGAGA+AGG + chr3.2:93116690-93116709 MS.gene68738:CDS 55.0%
GACCTTCTCAGCAGCAGCAA+TGG - chr3.2:93116695-93116714 None:intergenic 55.0%
GCAGGGCATGCAATATGTGG+TGG + chr3.2:93116475-93116494 MS.gene68738:CDS 55.0%
GCTCGCATGTGGGACATTGA+TGG + chr3.2:93115493-93115512 MS.gene68738:CDS 55.0%
GGAATCAGGAAGTCCTAGGG+TGG - chr3.2:93115927-93115946 None:intergenic 55.0%
GGGGGCTGTAAGGGTTTCAT+TGG - chr3.2:93115972-93115991 None:intergenic 55.0%
! GCACCTTCACAGTTTGAGGC+TGG + chr3.2:93116628-93116647 MS.gene68738:CDS 55.0%
! TCCGGCACTGAAGCATGCAT+GGG + chr3.2:93115791-93115810 MS.gene68738:CDS 55.0%
! TTCCGGCACTGAAGCATGCA+TGG + chr3.2:93115790-93115809 MS.gene68738:CDS 55.0%
!! CGTCAAAGGTGCTCGCATGT+GGG + chr3.2:93115483-93115502 MS.gene68738:CDS 55.0%
!! GGCAGCTTTAGGAACACCAG+GGG - chr3.2:93115948-93115967 None:intergenic 55.0%
!! GTGGCAGCTTTAGGAACACC+AGG - chr3.2:93115950-93115969 None:intergenic 55.0%
!!! GTTTTTCGGTGCTGGGCTTC+TGG - chr3.2:93115240-93115259 None:intergenic 55.0%
ACCAGGCTGGGACGTTGAGT+GGG + chr3.2:93116329-93116348 MS.gene68738:CDS 60.0%
CGCCTTGCCCGTGCTTATAC+CGG + chr3.2:93115821-93115840 MS.gene68738:CDS 60.0%
CGGTATAAGCACGGGCAAGG+CGG - chr3.2:93115823-93115842 None:intergenic 60.0%
GCCTGGTACATAGGTCCAGC+CGG - chr3.2:93116316-93116335 None:intergenic 60.0%
GCTGGACCTATGTACCAGGC+TGG + chr3.2:93116316-93116335 MS.gene68738:CDS 60.0%
TACCAGGCTGGGACGTTGAG+TGG + chr3.2:93116328-93116347 MS.gene68738:CDS 60.0%
TCCGGCTGGACCTATGTACC+AGG + chr3.2:93116312-93116331 MS.gene68738:CDS 60.0%
TGAGGCTGGGTTCACCAGCT+TGG + chr3.2:93116642-93116661 MS.gene68738:CDS 60.0%
TGCCGGTATAAGCACGGGCA+AGG - chr3.2:93115826-93115845 None:intergenic 60.0%
!! CCGTCAAAGGTGCTCGCATG+TGG + chr3.2:93115482-93115501 MS.gene68738:CDS 60.0%
!! GGTAGTGGAGTTGCCACCCT+AGG + chr3.2:93115911-93115930 MS.gene68738:CDS 60.0%
!! TTCGGTGCTGGGCTTCTGGT+CGG - chr3.2:93115236-93115255 None:intergenic 60.0%
CATAGGTCCAGCCGGAGCCA+CGG - chr3.2:93116308-93116327 None:intergenic 65.0%
TCCCACTCAACGTCCCAGCC+TGG - chr3.2:93116333-93116352 None:intergenic 65.0%
ATGGAGACCGTGGCTCCGGC+TGG + chr3.2:93116298-93116317 MS.gene68738:CDS 70.0%
! GGTGCTGGGCTTCTGGTCGG+TGG - chr3.2:93115233-93115252 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 93115220 93116729 93115220 ID=MS.gene68738
chr3.2 mRNA 93115220 93116729 93115220 ID=MS.gene68738.t1;Parent=MS.gene68738
chr3.2 exon 93115220 93115300 93115220 ID=MS.gene68738.t1.exon1;Parent=MS.gene68738.t1
chr3.2 CDS 93115220 93115300 93115220 ID=cds.MS.gene68738.t1;Parent=MS.gene68738.t1
chr3.2 exon 93115406 93115579 93115406 ID=MS.gene68738.t1.exon2;Parent=MS.gene68738.t1
chr3.2 CDS 93115406 93115579 93115406 ID=cds.MS.gene68738.t1;Parent=MS.gene68738.t1
chr3.2 exon 93115662 93116729 93115662 ID=MS.gene68738.t1.exon3;Parent=MS.gene68738.t1
chr3.2 CDS 93115662 93116729 93115662 ID=cds.MS.gene68738.t1;Parent=MS.gene68738.t1
Gene Sequence

>MS.gene68738

ATGGCTGTTTCCACCGACCAGAAGCCCAGCACCGAAAAACTCACTCTTCGCAAATCTGAAGAAGCTTTCGCAGCTGCAAAGGTAATTCTTCTTCTTCTTCTTCGCTTTTTCATCAACATCATCATCATCATCATCATCATCATCATCTAATAATAATAATAATAATGTAATAATCGATTTGATTAGGAATTGATGCCTGGAGGTGTGAACTCTCCTGTTCGTGCTTTCAAATCAGTTGGTGGACAACCAATTATCATTGATTCCGTCAAAGGTGCTCGCATGTGGGACATTGATGGCAACCAATACATTGACTATGTTGGTTCTTGGGGTCCTGCAATTATTGGTCACGCTGATGATCAGGTTTCTTATTTTTAACATAACCTCTTCAATTCTCTCATATATTGCTGCTGTTTATCCTTCAAACTTTTATGTTTAATTTCAGGTACTCTCCGCTCTTGCTGAGACAATGAAGAAAGGAACCAGCTTTGGTGCACCTTGTCTTCTTGAAAACACTCTAGCTGAGATGGTTATCTCTGCTGTTCCCAGCATTGAAATGGTCAGATTTGTCAATTCCGGCACTGAAGCATGCATGGGTGCACTCCGCCTTGCCCGTGCTTATACCGGCAAAGAGAAGATCATCAAGTTTGAGGGATGTTATCACGGCCATGCTGATCCTTTTCTTGTTAAGGCAGGTAGTGGAGTTGCCACCCTAGGACTTCCTGATTCCCCTGGTGTTCCTAAAGCTGCCACCAATGAAACCCTTACAGCCCCCTTCAATGACTTTGCTGCTGTTGAGAAGATCTTTGAAGCCAACAAAGGAGAGATAGCCGTAGTCTTCCTCGAACCTGTTGTTGGAAATTCCGGTTTCATTACTCCTAAACCTGATTTTCTTAGTTCCTTGCGCAAAATCACCAAGGAGAACAATGCCCTTCTCGTGTTTGATGAAGTTATGACTGGATTCCGTTTGTCGTATGGAGGTGCTCAACAATACTTTGGCATAACTCCTGATATAACAACTCTGGGGAAGATCATTGGAGGGGGTTTGCCAGTAGGTGCATATGGAGGTAGGAGAGATATTATGGAGACCGTGGCTCCGGCTGGACCTATGTACCAGGCTGGGACGTTGAGTGGGAATCCTTTGGCAATGACTGCAGGCATAGAAACTCTGAAGCGTATTAAGGAGCCAGGAACTTATGAATACTTGGACAAAATTACAGGTGAGCTTGTTCAAGGCATTGTTGAAGCTGGTAAGAAGGCAGGGCATGCAATATGTGGTGGGCATATAAATGGGATGTTTGGGTTTTTCTTCACAGAAGGACCTGTGTACAATTTCACAGATGCAAAAAAGAGTGACACTGCCAAGTTTGCTAAGTTCTTCTGGGGTATGTTAGCAGAAGGTGTCTATTTGGCACCTTCACAGTTTGAGGCTGGGTTCACCAGCTTGGCACATACTTCTGATGACATCAAGAAGACCATTGCTGCTGCTGAGAAGGTCTTTAGGGAGATCTGA

Protein sequence

>MS.gene68738.t1

MAVSTDQKPSTEKLTLRKSEEAFAAAKELMPGGVNSPVRAFKSVGGQPIIIDSVKGARMWDIDGNQYIDYVGSWGPAIIGHADDQVLSALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGALRLARAYTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATNETLTAPFNDFAAVEKIFEANKGEIAVVFLEPVVGNSGFITPKPDFLSSLRKITKENNALLVFDEVMTGFRLSYGGAQQYFGITPDITTLGKIIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIETLKRIKEPGTYEYLDKITGELVQGIVEAGKKAGHAICGGHINGMFGFFFTEGPVYNFTDAKKSDTAKFAKFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI