AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68138


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68138.t1 MTR_3g118070 99.270 411 3 0 1 411 58 468 0.0 838
MS.gene68138.t1 MTR_3g118070 99.270 411 3 0 1 411 1 411 0.0 833
MS.gene68138.t1 MTR_7g451450 34.448 299 169 10 19 304 87 371 8.03e-34 132
MS.gene68138.t1 MTR_7g072420 27.946 297 197 8 19 303 83 374 6.31e-21 95.1
MS.gene68138.t1 MTR_3g465800 27.759 299 197 7 18 303 74 366 6.48e-19 89.0
MS.gene68138.t1 MTR_3g465800 28.179 291 190 7 26 303 11 295 8.58e-19 87.8
MS.gene68138.t1 MTR_8g091660 25.373 335 219 11 18 334 82 403 1.78e-17 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68138.t1 AT3G48730 84.672 411 63 0 1 411 62 472 0.0 736
MS.gene68138.t1 AT5G63570 82.725 411 71 0 1 411 64 474 0.0 718
MS.gene68138.t1 AT5G63570 82.725 411 71 0 1 411 1 411 0.0 714
MS.gene68138.t1 AT5G46180 28.882 322 204 8 19 327 59 368 2.31e-30 122
MS.gene68138.t1 AT1G80600 29.773 309 170 10 19 304 77 361 6.22e-26 109
MS.gene68138.t1 AT3G08860 26.667 315 206 11 19 317 83 388 2.90e-20 92.8
MS.gene68138.t1 AT3G08860 26.667 315 206 11 19 317 83 388 3.29e-20 92.8
MS.gene68138.t1 AT4G39660 25.519 337 216 11 18 334 77 398 9.39e-20 91.7
MS.gene68138.t1 AT4G39660 25.538 325 207 11 30 334 14 323 1.27e-19 90.5
MS.gene68138.t1 AT2G38400 25.444 338 214 10 18 334 79 399 1.73e-16 81.6
MS.gene68138.t1 AT2G38400 25.444 338 214 10 18 334 79 399 2.08e-16 81.3

Find 142 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGTTTGCTAAGTTCTTC+TGG 0.125787 3.1:+92839983 MS.gene68138:CDS
TCTTGGGGTCCTGCAATTAT+TGG 0.214742 3.1:+92838947 MS.gene68138:CDS
TGGAGGTAGGAGAGATATTA+TGG 0.268158 3.1:+92839684 MS.gene68138:CDS
TTTGACGGAATCAATGATAA+TGG 0.275446 3.1:-92838873 None:intergenic
CATTGACTATGTTGGTTCTT+GGG 0.275476 3.1:+92838931 MS.gene68138:CDS
GTTTCATTGGTGGCAGCTTT+AGG 0.281598 3.1:-92839361 None:intergenic
CTGCTGCTGAGAAGGTCTTT+AGG 0.282740 3.1:+92840103 MS.gene68138:CDS
TGCTGCTGAGAAGGTCTTTA+GGG 0.286640 3.1:+92840104 MS.gene68138:CDS
CTTGATGATCTTCTCTTTGC+CGG 0.295779 3.1:-92839245 None:intergenic
CGCAAGGAACTAAGAAAATC+AGG 0.299535 3.1:-92839505 None:intergenic
ATATGTGGTGGGCATATAAA+TGG 0.309935 3.1:+92839892 MS.gene68138:CDS
TTCCCCAGAGTTGTTATATC+AGG 0.310573 3.1:-92839628 None:intergenic
ACATTGACTATGTTGGTTCT+TGG 0.314847 3.1:+92838930 MS.gene68138:CDS
CAAGTTTGCTAAGTTCTTCT+GGG 0.335783 3.1:+92839984 MS.gene68138:CDS
AGAAACTCTGAAGCGTATTA+AGG 0.338134 3.1:+92839783 MS.gene68138:CDS
GAACCTGTTGTTGGAAATTC+CGG 0.340485 3.1:+92839466 MS.gene68138:CDS
GTTAGCAGAAGGTGTCTATT+TGG 0.340874 3.1:+92840011 MS.gene68138:CDS
GAATACTTGGACAAAATTAC+AGG 0.342820 3.1:+92839820 MS.gene68138:CDS
ATGGTCAGATTTGTCAATTC+CGG 0.345817 3.1:+92839178 MS.gene68138:CDS
GGCATATAAATGGGATGTTT+GGG 0.350134 3.1:+92839902 MS.gene68138:CDS
GGGCATATAAATGGGATGTT+TGG 0.352503 3.1:+92839901 MS.gene68138:CDS
GCACCTTCACAGTTTGAGGC+TGG 0.354758 3.1:+92840033 MS.gene68138:CDS
TCCAAGTATTCATAAGTTCC+TGG 0.359322 3.1:-92839808 None:intergenic
TTAGGAACACCAGGGGAATC+AGG 0.388149 3.1:-92839343 None:intergenic
TTTGGCACCTTCACAGTTTG+AGG 0.388856 3.1:+92840029 MS.gene68138:CDS
GGCTGTAAGGGTTTCATTGG+TGG 0.391375 3.1:-92839371 None:intergenic
GAACTAAGAAAATCAGGTTT+AGG 0.397600 3.1:-92839499 None:intergenic
TACGGCTATCTCTCCTTTGT+TGG 0.403214 3.1:-92839434 None:intergenic
TATTGGTCACGCTGATGATC+AGG 0.409676 3.1:+92838964 MS.gene68138:CDS
TTGACGGAATCAATGATAAT+GGG 0.415140 3.1:-92838872 None:intergenic
TGCTGTTCCCAGCATTGAAA+TGG 0.417543 3.1:+92839159 MS.gene68138:CDS
CCAGAAGAACTTAGCAAACT+TGG 0.420091 3.1:-92839983 None:intergenic
TTTCTTGTTAAGGCAGGTAG+TGG 0.428022 3.1:+92839301 MS.gene68138:CDS
ATGAAGAAAGGAACCAGCTT+TGG 0.429438 3.1:+92839091 MS.gene68138:CDS
GACGTTGAGTGGGAATCCTT+TGG 0.430505 3.1:+92839744 MS.gene68138:CDS
GTCTTCCTCGAACCTGTTGT+TGG 0.431603 3.1:+92839457 MS.gene68138:CDS
CACCTTCACAGTTTGAGGCT+GGG 0.433643 3.1:+92840034 MS.gene68138:CDS
CTACCTGCCTTAACAAGAAA+AGG 0.436782 3.1:-92839298 None:intergenic
GGTTTGCCAGTAGGTGCATA+TGG 0.445263 3.1:+92839664 MS.gene68138:CDS
AAACCGGAATTTCCAACAAC+AGG 0.445497 3.1:-92839469 None:intergenic
ACAACTCTGGGGAAGATCAT+TGG 0.450763 3.1:+92839637 MS.gene68138:CDS
CCACATGCGAGCACCTTTGA+CGG 0.452870 3.1:-92838888 None:intergenic
ACTGGATTCCGTTTGTCGTA+TGG 0.457113 3.1:+92839577 MS.gene68138:CDS
TCAGCGTGACCAATAATTGC+AGG 0.459493 3.1:-92838956 None:intergenic
ATTGACTATGTTGGTTCTTG+GGG 0.459541 3.1:+92838932 MS.gene68138:CDS
TGAGGCTGGGTTCACCAGCT+TGG 0.460390 3.1:+92840047 MS.gene68138:CDS
AAATCTGACCATTTCAATGC+TGG 0.463786 3.1:-92839167 None:intergenic
CGCCTTGCCCGTGCTTATAC+CGG 0.463976 3.1:+92839226 MS.gene68138:CDS
AACTCCTGATATAACAACTC+TGG 0.465327 3.1:+92839624 MS.gene68138:CDS
CAGGGGAATCAGGAAGTCCT+AGG 0.466845 3.1:-92839333 None:intergenic
TTTGATTAGGAATTGATGCC+TGG 0.467656 3.1:+92838803 None:intergenic
ATTATCATTGATTCCGTCAA+AGG 0.468261 3.1:+92838875 MS.gene68138:CDS
ACTCCTGATATAACAACTCT+GGG 0.468947 3.1:+92839625 MS.gene68138:CDS
ATGGAGACCGTGGCTCCGGC+TGG 0.468994 3.1:+92839703 MS.gene68138:CDS
AGAGAAGATCATCAAGTTTG+AGG 0.471292 3.1:+92839252 MS.gene68138:CDS
ATTACAGGTGAGCTTGTTCA+AGG 0.477356 3.1:+92839835 MS.gene68138:CDS
AAGACAAGGTGCACCAAAGC+TGG 0.477394 3.1:-92839104 None:intergenic
TTCCGGCACTGAAGCATGCA+TGG 0.479996 3.1:+92839195 MS.gene68138:CDS
GAGAAGATCATCAAGTTTGA+GGG 0.481387 3.1:+92839253 MS.gene68138:CDS
GACCATTGCTGCTGCTGAGA+AGG 0.485730 3.1:+92840095 MS.gene68138:CDS
CTCTTTGCCGGTATAAGCAC+GGG 0.486208 3.1:-92839233 None:intergenic
GTTCAAGGCATTGTTGAAGC+TGG 0.489925 3.1:+92839850 MS.gene68138:CDS
AACCAACATAGTCAATGTAT+TGG 0.491453 3.1:-92838925 None:intergenic
ACTGATTTGAAAGCACGAAC+AGG 0.495762 3.1:-92838839 None:intergenic
GTGTTTGATGAAGTTATGAC+TGG 0.497336 3.1:+92839559 MS.gene68138:CDS
GCCAGGAACTTATGAATACT+TGG 0.499909 3.1:+92839807 MS.gene68138:CDS
GCTGGACCTATGTACCAGGC+TGG 0.502027 3.1:+92839721 MS.gene68138:CDS
AACAGCAGCAAAGTCATTGA+AGG 0.503512 3.1:-92839395 None:intergenic
AATCCTTTGGCAATGACTGC+AGG 0.505080 3.1:+92839757 MS.gene68138:CDS
GTTCGTGCTTTCAAATCAGT+TGG 0.507920 3.1:+92838842 MS.gene68138:CDS
GAGCACCTCCATACGACAAA+CGG 0.508625 3.1:-92839585 None:intergenic
GTTGAAGCTGGTAAGAAGGC+AGG 0.509704 3.1:+92839862 MS.gene68138:CDS
AACCAATACATTGACTATGT+TGG 0.510475 3.1:+92838923 MS.gene68138:CDS
ACAGGAGAGTTCACACCTCC+AGG 0.510938 3.1:-92838821 None:intergenic
TATTATGGAGACCGTGGCTC+CGG 0.513114 3.1:+92839699 MS.gene68138:CDS
AACGTCCCAGCCTGGTACAT+AGG 0.518158 3.1:-92839727 None:intergenic
GCCTGGTACATAGGTCCAGC+CGG 0.518203 3.1:-92839718 None:intergenic
TTCTGGGGTATGTTAGCAGA+AGG 0.519712 3.1:+92840000 MS.gene68138:CDS
GACCTTCTCAGCAGCAGCAA+TGG 0.522852 3.1:-92840097 None:intergenic
CTAGGACTTCCTGATTCCCC+TGG 0.524552 3.1:+92839334 MS.gene68138:CDS
TGAAAACACTCTAGCTGAGA+TGG 0.530589 3.1:+92839129 MS.gene68138:CDS
ACCCATGCATGCTTCAGTGC+CGG 0.530882 3.1:-92839197 None:intergenic
CTACCTCCATATGCACCTAC+TGG 0.530999 3.1:-92839670 None:intergenic
CGTGCTTTCAAATCAGTTGG+TGG 0.531486 3.1:+92838845 MS.gene68138:CDS
CCGTCAAAGGTGCTCGCATG+TGG 0.532480 3.1:+92838888 MS.gene68138:CDS
TACCAGGCTGGGACGTTGAG+TGG 0.532692 3.1:+92839733 MS.gene68138:CDS
GAGAAGGGCATTGTTCTCCT+TGG 0.539822 3.1:-92839536 None:intergenic
CATTGTTGAAGCTGGTAAGA+AGG 0.540418 3.1:+92839858 MS.gene68138:CDS
AGGTTTAGGAGTAATGAAAC+CGG 0.540434 3.1:-92839485 None:intergenic
GGAGGTGCTCAACAATACTT+TGG 0.540803 3.1:+92839598 MS.gene68138:CDS
CTGAAGCGTATTAAGGAGCC+AGG 0.542721 3.1:+92839790 MS.gene68138:CDS
CTGGACCTATGTACCAGGCT+GGG 0.542962 3.1:+92839722 MS.gene68138:CDS
AATTTCCAACAACAGGTTCG+AGG 0.544211 3.1:-92839462 None:intergenic
TGCCGGTATAAGCACGGGCA+AGG 0.545023 3.1:-92839228 None:intergenic
ATCAGAAGTATGTGCCAAGC+TGG 0.549286 3.1:-92840061 None:intergenic
TCCGGCTGGACCTATGTACC+AGG 0.550164 3.1:+92839717 MS.gene68138:CDS
AATCTGACCATTTCAATGCT+GGG 0.551104 3.1:-92839166 None:intergenic
GCTCGCATGTGGGACATTGA+TGG 0.552562 3.1:+92838899 MS.gene68138:CDS
GGTAGTGGAGTTGCCACCCT+AGG 0.552592 3.1:+92839316 MS.gene68138:CDS
TCCCACTCAACGTCCCAGCC+TGG 0.554590 3.1:-92839735 None:intergenic
CTTGCTGAGACAATGAAGAA+AGG 0.555611 3.1:+92839079 MS.gene68138:CDS
TCTCTTTGCCGGTATAAGCA+CGG 0.568722 3.1:-92839234 None:intergenic
CATAGGTCCAGCCGGAGCCA+CGG 0.570397 3.1:-92839710 None:intergenic
GTGGCAGCTTTAGGAACACC+AGG 0.571077 3.1:-92839352 None:intergenic
ACAGCAGCAAAGTCATTGAA+GGG 0.578728 3.1:-92839394 None:intergenic
GCAGGGCATGCAATATGTGG+TGG 0.581592 3.1:+92839880 MS.gene68138:CDS
TATGTGGTGGGCATATAAAT+GGG 0.582602 3.1:+92839893 MS.gene68138:CDS
AAGTTTGCTAAGTTCTTCTG+GGG 0.584115 3.1:+92839985 MS.gene68138:CDS
TAACTTCATCAAACACGAGA+AGG 0.585499 3.1:-92839552 None:intergenic
TTGAAGCTGGTAAGAAGGCA+GGG 0.585619 3.1:+92839863 MS.gene68138:CDS
AGGGGAATCAGGAAGTCCTA+GGG 0.587377 3.1:-92839332 None:intergenic
GGATTCCGTTTGTCGTATGG+AGG 0.588634 3.1:+92839580 MS.gene68138:CDS
AAGTTTGAGGGATGTTATCA+CGG 0.591307 3.1:+92839265 MS.gene68138:CDS
AAGGCAGGGCATGCAATATG+TGG 0.593656 3.1:+92839877 MS.gene68138:CDS
CTTCATTGTCTCAGCAAGAG+CGG 0.594962 3.1:-92839074 None:intergenic
ATGCCTGCAGTCATTGCCAA+AGG 0.596171 3.1:-92839760 None:intergenic
ACTCTGGGGAAGATCATTGG+AGG 0.600178 3.1:+92839640 MS.gene68138:CDS
CAGTAGGTGCATATGGAGGT+AGG 0.601307 3.1:+92839671 MS.gene68138:CDS
TCCGGCACTGAAGCATGCAT+GGG 0.605633 3.1:+92839196 MS.gene68138:CDS
CAGGGCATGCAATATGTGGT+GGG 0.605835 3.1:+92839881 MS.gene68138:CDS
ACCAGGCTGGGACGTTGAGT+GGG 0.609650 3.1:+92839734 MS.gene68138:CDS
CTGGGGAAGATCATTGGAGG+GGG 0.612965 3.1:+92839643 MS.gene68138:CDS
AACTTCATCAAACACGAGAA+GGG 0.614126 3.1:-92839551 None:intergenic
AACAGGTTCGAGGAAGACTA+CGG 0.621214 3.1:-92839452 None:intergenic
CGTCAAAGGTGCTCGCATGT+GGG 0.625959 3.1:+92838889 MS.gene68138:CDS
AACCCAGCCTCAAACTGTGA+AGG 0.634803 3.1:-92840036 None:intergenic
AAGATCTTTGAAGCCAACAA+AGG 0.638698 3.1:+92839421 MS.gene68138:CDS
GCATCTGTGAAATTGTACAC+AGG 0.641026 3.1:-92839943 None:intergenic
GGAATCAGGAAGTCCTAGGG+TGG 0.643441 3.1:-92839329 None:intergenic
CGGTATAAGCACGGGCAAGG+CGG 0.653099 3.1:-92839225 None:intergenic
CAGCAGCAAAGTCATTGAAG+GGG 0.654908 3.1:-92839393 None:intergenic
GAGAGATATTATGGAGACCG+TGG 0.661183 3.1:+92839693 MS.gene68138:CDS
TCTGGGGAAGATCATTGGAG+GGG 0.662523 3.1:+92839642 MS.gene68138:CDS
AGCAGCAAAGTCATTGAAGG+GGG 0.664856 3.1:-92839392 None:intergenic
CTCTGGGGAAGATCATTGGA+GGG 0.675119 3.1:+92839641 MS.gene68138:CDS
TAACAAGAAAAGGATCAGCA+TGG 0.678181 3.1:-92839288 None:intergenic
TTCCTTGCGCAAAATCACCA+AGG 0.686509 3.1:+92839519 MS.gene68138:CDS
TTGCCAGTAGGTGCATATGG+AGG 0.697062 3.1:+92839667 MS.gene68138:CDS
GGCAGCTTTAGGAACACCAG+GGG 0.703847 3.1:-92839350 None:intergenic
TGGCAGCTTTAGGAACACCA+GGG 0.708271 3.1:-92839351 None:intergenic
GATTAGGAATTGATGCCTGG+AGG 0.717601 3.1:+92838806 None:intergenic
CTCCTGATATAACAACTCTG+GGG 0.744293 3.1:+92839626 MS.gene68138:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAACATAAAGTTTGA+AGG - chr3.1:92839044-92839063 None:intergenic 15.0%
!!! CAAACTTTATGTTTAATTTC+AGG + chr3.1:92839045-92839064 MS.gene68138:intron 20.0%
! AATATATGAGAGAATTGAAG+AGG - chr3.1:92839009-92839028 None:intergenic 25.0%
AACCAACATAGTCAATGTAT+TGG - chr3.1:92838928-92838947 None:intergenic 30.0%
GAACTAAGAAAATCAGGTTT+AGG - chr3.1:92839502-92839521 None:intergenic 30.0%
GAATACTTGGACAAAATTAC+AGG + chr3.1:92839820-92839839 MS.gene68138:CDS 30.0%
TTGACGGAATCAATGATAAT+GGG - chr3.1:92838875-92838894 None:intergenic 30.0%
TTTGACGGAATCAATGATAA+TGG - chr3.1:92838876-92838895 None:intergenic 30.0%
! AACCAATACATTGACTATGT+TGG + chr3.1:92838923-92838942 MS.gene68138:CDS 30.0%
!! ATTATCATTGATTCCGTCAA+AGG + chr3.1:92838875-92838894 MS.gene68138:CDS 30.0%
AAATCTGACCATTTCAATGC+TGG - chr3.1:92839170-92839189 None:intergenic 35.0%
AACTCCTGATATAACAACTC+TGG + chr3.1:92839624-92839643 MS.gene68138:CDS 35.0%
AACTTCATCAAACACGAGAA+GGG - chr3.1:92839554-92839573 None:intergenic 35.0%
AAGTTTGAGGGATGTTATCA+CGG + chr3.1:92839265-92839284 MS.gene68138:CDS 35.0%
AATCTGACCATTTCAATGCT+GGG - chr3.1:92839169-92839188 None:intergenic 35.0%
ACTCCTGATATAACAACTCT+GGG + chr3.1:92839625-92839644 MS.gene68138:CDS 35.0%
AGAGAAGATCATCAAGTTTG+AGG + chr3.1:92839252-92839271 MS.gene68138:CDS 35.0%
AGGTTTAGGAGTAATGAAAC+CGG - chr3.1:92839488-92839507 None:intergenic 35.0%
ATGGTCAGATTTGTCAATTC+CGG + chr3.1:92839178-92839197 MS.gene68138:CDS 35.0%
GAGAAGATCATCAAGTTTGA+GGG + chr3.1:92839253-92839272 MS.gene68138:CDS 35.0%
GGCATATAAATGGGATGTTT+GGG + chr3.1:92839902-92839921 MS.gene68138:CDS 35.0%
GTGTTTGATGAAGTTATGAC+TGG + chr3.1:92839559-92839578 MS.gene68138:CDS 35.0%
TAACAAGAAAAGGATCAGCA+TGG - chr3.1:92839291-92839310 None:intergenic 35.0%
TAACTTCATCAAACACGAGA+AGG - chr3.1:92839555-92839574 None:intergenic 35.0%
TCCAAGTATTCATAAGTTCC+TGG - chr3.1:92839811-92839830 None:intergenic 35.0%
! TGCTGATCCTTTTCTTGTTA+AGG + chr3.1:92839291-92839310 MS.gene68138:CDS 35.0%
!! AAGATCTTTGAAGCCAACAA+AGG + chr3.1:92839421-92839440 MS.gene68138:CDS 35.0%
!! AAGTTTGCTAAGTTCTTCTG+GGG + chr3.1:92839985-92840004 MS.gene68138:CDS 35.0%
!! ACATTGACTATGTTGGTTCT+TGG + chr3.1:92838930-92838949 MS.gene68138:CDS 35.0%
!! AGAAACTCTGAAGCGTATTA+AGG + chr3.1:92839783-92839802 MS.gene68138:CDS 35.0%
!! AGAGTGTTTTCAAGAAGACA+AGG - chr3.1:92839121-92839140 None:intergenic 35.0%
!! ATATGTGGTGGGCATATAAA+TGG + chr3.1:92839892-92839911 MS.gene68138:CDS 35.0%
!! ATTGACTATGTTGGTTCTTG+GGG + chr3.1:92838932-92838951 MS.gene68138:CDS 35.0%
!! CAAGTTTGCTAAGTTCTTCT+GGG + chr3.1:92839984-92840003 MS.gene68138:CDS 35.0%
!! CATTGACTATGTTGGTTCTT+GGG + chr3.1:92838931-92838950 MS.gene68138:CDS 35.0%
!! TATGTGGTGGGCATATAAAT+GGG + chr3.1:92839893-92839912 MS.gene68138:CDS 35.0%
!! TTTGGGTTTTTCTTCACAGA+AGG + chr3.1:92839919-92839938 MS.gene68138:CDS 35.0%
AAACCGGAATTTCCAACAAC+AGG - chr3.1:92839472-92839491 None:intergenic 40.0%
AACAGCAGCAAAGTCATTGA+AGG - chr3.1:92839398-92839417 None:intergenic 40.0%
AATTTCCAACAACAGGTTCG+AGG - chr3.1:92839465-92839484 None:intergenic 40.0%
ACAGCAGCAAAGTCATTGAA+GGG - chr3.1:92839397-92839416 None:intergenic 40.0%
ATGAAGAAAGGAACCAGCTT+TGG + chr3.1:92839091-92839110 MS.gene68138:CDS 40.0%
CATTGTTGAAGCTGGTAAGA+AGG + chr3.1:92839858-92839877 MS.gene68138:CDS 40.0%
CCAGAAGAACTTAGCAAACT+TGG - chr3.1:92839986-92840005 None:intergenic 40.0%
CGCAAGGAACTAAGAAAATC+AGG - chr3.1:92839508-92839527 None:intergenic 40.0%
CTACCTGCCTTAACAAGAAA+AGG - chr3.1:92839301-92839320 None:intergenic 40.0%
CTCCTGATATAACAACTCTG+GGG + chr3.1:92839626-92839645 MS.gene68138:CDS 40.0%
CTTGCTGAGACAATGAAGAA+AGG + chr3.1:92839079-92839098 MS.gene68138:CDS 40.0%
GAACCTGTTGTTGGAAATTC+CGG + chr3.1:92839466-92839485 MS.gene68138:CDS 40.0%
GCATCTGTGAAATTGTACAC+AGG - chr3.1:92839946-92839965 None:intergenic 40.0%
GCCAGGAACTTATGAATACT+TGG + chr3.1:92839807-92839826 MS.gene68138:CDS 40.0%
GGGCATATAAATGGGATGTT+TGG + chr3.1:92839901-92839920 MS.gene68138:CDS 40.0%
GTTCGTGCTTTCAAATCAGT+TGG + chr3.1:92838842-92838861 MS.gene68138:CDS 40.0%
TGAAAACACTCTAGCTGAGA+TGG + chr3.1:92839129-92839148 MS.gene68138:CDS 40.0%
TGGAGGTAGGAGAGATATTA+TGG + chr3.1:92839684-92839703 MS.gene68138:CDS 40.0%
TTCCCCAGAGTTGTTATATC+AGG - chr3.1:92839631-92839650 None:intergenic 40.0%
TTTCTTGTTAAGGCAGGTAG+TGG + chr3.1:92839301-92839320 MS.gene68138:CDS 40.0%
! ATTACAGGTGAGCTTGTTCA+AGG + chr3.1:92839835-92839854 MS.gene68138:CDS 40.0%
! CTTGATGATCTTCTCTTTGC+CGG - chr3.1:92839248-92839267 None:intergenic 40.0%
! GATCCTTTTCTTGTTAAGGC+AGG + chr3.1:92839295-92839314 MS.gene68138:CDS 40.0%
!! ACTGATTTGAAAGCACGAAC+AGG - chr3.1:92838842-92838861 None:intergenic 40.0%
!! CCAAGTTTGCTAAGTTCTTC+TGG + chr3.1:92839983-92840002 MS.gene68138:CDS 40.0%
!! GTTAGCAGAAGGTGTCTATT+TGG + chr3.1:92840011-92840030 MS.gene68138:CDS 40.0%
AACAGGTTCGAGGAAGACTA+CGG - chr3.1:92839455-92839474 None:intergenic 45.0%
AATCCTTTGGCAATGACTGC+AGG + chr3.1:92839757-92839776 MS.gene68138:CDS 45.0%
ACTGGATTCCGTTTGTCGTA+TGG + chr3.1:92839577-92839596 MS.gene68138:CDS 45.0%
AGCAGCAAAGTCATTGAAGG+GGG - chr3.1:92839395-92839414 None:intergenic 45.0%
CAGCAGCAAAGTCATTGAAG+GGG - chr3.1:92839396-92839415 None:intergenic 45.0%
CGTGCTTTCAAATCAGTTGG+TGG + chr3.1:92838845-92838864 MS.gene68138:CDS 45.0%
CTTCATTGTCTCAGCAAGAG+CGG - chr3.1:92839077-92839096 None:intergenic 45.0%
GAGAGATATTATGGAGACCG+TGG + chr3.1:92839693-92839712 MS.gene68138:CDS 45.0%
TACGGCTATCTCTCCTTTGT+TGG - chr3.1:92839437-92839456 None:intergenic 45.0%
TATTGGTCACGCTGATGATC+AGG + chr3.1:92838964-92838983 MS.gene68138:CDS 45.0%
TCAGCGTGACCAATAATTGC+AGG - chr3.1:92838959-92838978 None:intergenic 45.0%
TCTCTTTGCCGGTATAAGCA+CGG - chr3.1:92839237-92839256 None:intergenic 45.0%
TCTTGGGGTCCTGCAATTAT+TGG + chr3.1:92838947-92838966 MS.gene68138:CDS 45.0%
TGCTGCTGAGAAGGTCTTTA+GGG + chr3.1:92840104-92840123 MS.gene68138:CDS 45.0%
TTCCTTGCGCAAAATCACCA+AGG + chr3.1:92839519-92839538 MS.gene68138:CDS 45.0%
TTGAAGCTGGTAAGAAGGCA+GGG + chr3.1:92839863-92839882 MS.gene68138:CDS 45.0%
TTTGGCACCTTCACAGTTTG+AGG + chr3.1:92840029-92840048 MS.gene68138:CDS 45.0%
! ACAACTCTGGGGAAGATCAT+TGG + chr3.1:92839637-92839656 MS.gene68138:CDS 45.0%
! ATCAGAAGTATGTGCCAAGC+TGG - chr3.1:92840064-92840083 None:intergenic 45.0%
! GTTTCATTGGTGGCAGCTTT+AGG - chr3.1:92839364-92839383 None:intergenic 45.0%
! TGCTGTTCCCAGCATTGAAA+TGG + chr3.1:92839159-92839178 MS.gene68138:CDS 45.0%
!! GGAGGTGCTCAACAATACTT+TGG + chr3.1:92839598-92839617 MS.gene68138:CDS 45.0%
!! GTTCAAGGCATTGTTGAAGC+TGG + chr3.1:92839850-92839869 MS.gene68138:CDS 45.0%
!! TTCTGGGGTATGTTAGCAGA+AGG + chr3.1:92840000-92840019 MS.gene68138:CDS 45.0%
AACCCAGCCTCAAACTGTGA+AGG - chr3.1:92840039-92840058 None:intergenic 50.0%
AAGACAAGGTGCACCAAAGC+TGG - chr3.1:92839107-92839126 None:intergenic 50.0%
AAGGCAGGGCATGCAATATG+TGG + chr3.1:92839877-92839896 MS.gene68138:CDS 50.0%
AGGGGAATCAGGAAGTCCTA+GGG - chr3.1:92839335-92839354 None:intergenic 50.0%
AGTCATTGAAGGGGGCTGTA+AGG - chr3.1:92839387-92839406 None:intergenic 50.0%
ATGCCTGCAGTCATTGCCAA+AGG - chr3.1:92839763-92839782 None:intergenic 50.0%
CAGGGCATGCAATATGTGGT+GGG + chr3.1:92839881-92839900 MS.gene68138:CDS 50.0%
CAGTAGGTGCATATGGAGGT+AGG + chr3.1:92839671-92839690 MS.gene68138:CDS 50.0%
CTACCTCCATATGCACCTAC+TGG - chr3.1:92839673-92839692 None:intergenic 50.0%
CTCTTTGCCGGTATAAGCAC+GGG - chr3.1:92839236-92839255 None:intergenic 50.0%
CTGAAGCGTATTAAGGAGCC+AGG + chr3.1:92839790-92839809 MS.gene68138:CDS 50.0%
CTGCTGCTGAGAAGGTCTTT+AGG + chr3.1:92840103-92840122 MS.gene68138:CDS 50.0%
GACGTTGAGTGGGAATCCTT+TGG + chr3.1:92839744-92839763 MS.gene68138:CDS 50.0%
GAGCACCTCCATACGACAAA+CGG - chr3.1:92839588-92839607 None:intergenic 50.0%
GGATTCCGTTTGTCGTATGG+AGG + chr3.1:92839580-92839599 MS.gene68138:CDS 50.0%
GGCTGTAAGGGTTTCATTGG+TGG - chr3.1:92839374-92839393 None:intergenic 50.0%
GGTTTGCCAGTAGGTGCATA+TGG + chr3.1:92839664-92839683 MS.gene68138:CDS 50.0%
GTCATTGAAGGGGGCTGTAA+GGG - chr3.1:92839386-92839405 None:intergenic 50.0%
GTCTTCCTCGAACCTGTTGT+TGG + chr3.1:92839457-92839476 MS.gene68138:CDS 50.0%
GTTGAAGCTGGTAAGAAGGC+AGG + chr3.1:92839862-92839881 MS.gene68138:CDS 50.0%
TATTATGGAGACCGTGGCTC+CGG + chr3.1:92839699-92839718 MS.gene68138:CDS 50.0%
TCTGGGGAAGATCATTGGAG+GGG + chr3.1:92839642-92839661 MS.gene68138:CDS 50.0%
TTAGGAACACCAGGGGAATC+AGG - chr3.1:92839346-92839365 None:intergenic 50.0%
TTGCCAGTAGGTGCATATGG+AGG + chr3.1:92839667-92839686 MS.gene68138:CDS 50.0%
! ACTCTGGGGAAGATCATTGG+AGG + chr3.1:92839640-92839659 MS.gene68138:CDS 50.0%
! CACCTTCACAGTTTGAGGCT+GGG + chr3.1:92840034-92840053 MS.gene68138:CDS 50.0%
! CTCTGGGGAAGATCATTGGA+GGG + chr3.1:92839641-92839660 MS.gene68138:CDS 50.0%
!! CTCCTTGGTGATTTTGCGCA+AGG - chr3.1:92839524-92839543 None:intergenic 50.0%
!! GAGAAGGGCATTGTTCTCCT+TGG - chr3.1:92839539-92839558 None:intergenic 50.0%
!! TGGCAGCTTTAGGAACACCA+GGG - chr3.1:92839354-92839373 None:intergenic 50.0%
AACGTCCCAGCCTGGTACAT+AGG - chr3.1:92839730-92839749 None:intergenic 55.0%
ACAGGAGAGTTCACACCTCC+AGG - chr3.1:92838824-92838843 None:intergenic 55.0%
ACCCATGCATGCTTCAGTGC+CGG - chr3.1:92839200-92839219 None:intergenic 55.0%
ATTGGAGGGGGTTTGCCAGT+AGG + chr3.1:92839655-92839674 MS.gene68138:CDS 55.0%
CAGGGGAATCAGGAAGTCCT+AGG - chr3.1:92839336-92839355 None:intergenic 55.0%
CCACATGCGAGCACCTTTGA+CGG - chr3.1:92838891-92838910 None:intergenic 55.0%
CTAGGACTTCCTGATTCCCC+TGG + chr3.1:92839334-92839353 MS.gene68138:CDS 55.0%
CTGGACCTATGTACCAGGCT+GGG + chr3.1:92839722-92839741 MS.gene68138:CDS 55.0%
CTGGGGAAGATCATTGGAGG+GGG + chr3.1:92839643-92839662 MS.gene68138:CDS 55.0%
GACCATTGCTGCTGCTGAGA+AGG + chr3.1:92840095-92840114 MS.gene68138:CDS 55.0%
GACCTTCTCAGCAGCAGCAA+TGG - chr3.1:92840100-92840119 None:intergenic 55.0%
GCAGGGCATGCAATATGTGG+TGG + chr3.1:92839880-92839899 MS.gene68138:CDS 55.0%
GCTCGCATGTGGGACATTGA+TGG + chr3.1:92838899-92838918 MS.gene68138:CDS 55.0%
GGAATCAGGAAGTCCTAGGG+TGG - chr3.1:92839332-92839351 None:intergenic 55.0%
GGGGGCTGTAAGGGTTTCAT+TGG - chr3.1:92839377-92839396 None:intergenic 55.0%
! GCACCTTCACAGTTTGAGGC+TGG + chr3.1:92840033-92840052 MS.gene68138:CDS 55.0%
! TCCGGCACTGAAGCATGCAT+GGG + chr3.1:92839196-92839215 MS.gene68138:CDS 55.0%
! TTCCGGCACTGAAGCATGCA+TGG + chr3.1:92839195-92839214 MS.gene68138:CDS 55.0%
!! CGTCAAAGGTGCTCGCATGT+GGG + chr3.1:92838889-92838908 MS.gene68138:CDS 55.0%
!! GGCAGCTTTAGGAACACCAG+GGG - chr3.1:92839353-92839372 None:intergenic 55.0%
!! GTGGCAGCTTTAGGAACACC+AGG - chr3.1:92839355-92839374 None:intergenic 55.0%
ACCAGGCTGGGACGTTGAGT+GGG + chr3.1:92839734-92839753 MS.gene68138:CDS 60.0%
CGCCTTGCCCGTGCTTATAC+CGG + chr3.1:92839226-92839245 MS.gene68138:CDS 60.0%
CGGTATAAGCACGGGCAAGG+CGG - chr3.1:92839228-92839247 None:intergenic 60.0%
GCCTGGTACATAGGTCCAGC+CGG - chr3.1:92839721-92839740 None:intergenic 60.0%
GCTGGACCTATGTACCAGGC+TGG + chr3.1:92839721-92839740 MS.gene68138:CDS 60.0%
TACCAGGCTGGGACGTTGAG+TGG + chr3.1:92839733-92839752 MS.gene68138:CDS 60.0%
TCCGGCTGGACCTATGTACC+AGG + chr3.1:92839717-92839736 MS.gene68138:CDS 60.0%
TGAGGCTGGGTTCACCAGCT+TGG + chr3.1:92840047-92840066 MS.gene68138:CDS 60.0%
TGCCGGTATAAGCACGGGCA+AGG - chr3.1:92839231-92839250 None:intergenic 60.0%
!! CCGTCAAAGGTGCTCGCATG+TGG + chr3.1:92838888-92838907 MS.gene68138:CDS 60.0%
!! GGTAGTGGAGTTGCCACCCT+AGG + chr3.1:92839316-92839335 MS.gene68138:CDS 60.0%
CATAGGTCCAGCCGGAGCCA+CGG - chr3.1:92839713-92839732 None:intergenic 65.0%
TCCCACTCAACGTCCCAGCC+TGG - chr3.1:92839738-92839757 None:intergenic 65.0%
ATGGAGACCGTGGCTCCGGC+TGG + chr3.1:92839703-92839722 MS.gene68138:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 92838818 92840134 92838818 ID=MS.gene68138
chr3.1 mRNA 92838818 92840134 92838818 ID=MS.gene68138.t1;Parent=MS.gene68138
chr3.1 exon 92838818 92838985 92838818 ID=MS.gene68138.t1.exon1;Parent=MS.gene68138.t1
chr3.1 CDS 92838818 92838985 92838818 ID=cds.MS.gene68138.t1;Parent=MS.gene68138.t1
chr3.1 exon 92839067 92840134 92839067 ID=MS.gene68138.t1.exon2;Parent=MS.gene68138.t1
chr3.1 CDS 92839067 92840134 92839067 ID=cds.MS.gene68138.t1;Parent=MS.gene68138.t1
Gene Sequence

>MS.gene68138

ATGCCTGGAGGTGTGAACTCTCCTGTTCGTGCTTTCAAATCAGTTGGTGGACAACCCATTATCATTGATTCCGTCAAAGGTGCTCGCATGTGGGACATTGATGGCAACCAATACATTGACTATGTTGGTTCTTGGGGTCCTGCAATTATTGGTCACGCTGATGATCAGGTTTCTTATTTTTAACATAACCTCTTCAATTCTCTCATATATTGCTGCTGTTTATCCTTCAAACTTTATGTTTAATTTCAGGTACTCTCCGCTCTTGCTGAGACAATGAAGAAAGGAACCAGCTTTGGTGCACCTTGTCTTCTTGAAAACACTCTAGCTGAGATGGTTATCTCTGCTGTTCCCAGCATTGAAATGGTCAGATTTGTCAATTCCGGCACTGAAGCATGCATGGGTGCACTCCGCCTTGCCCGTGCTTATACCGGCAAAGAGAAGATCATCAAGTTTGAGGGATGTTATCACGGCCATGCTGATCCTTTTCTTGTTAAGGCAGGTAGTGGAGTTGCCACCCTAGGACTTCCTGATTCCCCTGGTGTTCCTAAAGCTGCCACCAATGAAACCCTTACAGCCCCCTTCAATGACTTTGCTGCTGTTGAGAAGATCTTTGAAGCCAACAAAGGAGAGATAGCCGTAGTCTTCCTCGAACCTGTTGTTGGAAATTCCGGTTTCATTACTCCTAAACCTGATTTTCTTAGTTCCTTGCGCAAAATCACCAAGGAGAACAATGCCCTTCTCGTGTTTGATGAAGTTATGACTGGATTCCGTTTGTCGTATGGAGGTGCTCAACAATACTTTGGCATAACTCCTGATATAACAACTCTGGGGAAGATCATTGGAGGGGGTTTGCCAGTAGGTGCATATGGAGGTAGGAGAGATATTATGGAGACCGTGGCTCCGGCTGGACCTATGTACCAGGCTGGGACGTTGAGTGGGAATCCTTTGGCAATGACTGCAGGCATAGAAACTCTGAAGCGTATTAAGGAGCCAGGAACTTATGAATACTTGGACAAAATTACAGGTGAGCTTGTTCAAGGCATTGTTGAAGCTGGTAAGAAGGCAGGGCATGCAATATGTGGTGGGCATATAAATGGGATGTTTGGGTTTTTCTTCACAGAAGGACCTGTGTACAATTTCACAGATGCAAAAAAGAGTGACACTGCCAAGTTTGCTAAGTTCTTCTGGGGTATGTTAGCAGAAGGTGTCTATTTGGCACCTTCACAGTTTGAGGCTGGGTTCACCAGCTTGGCACATACTTCTGATGACATCAAGAAGACCATTGCTGCTGCTGAGAAGGTCTTTAGGGAGATCTGA

Protein sequence

>MS.gene68138.t1

MPGGVNSPVRAFKSVGGQPIIIDSVKGARMWDIDGNQYIDYVGSWGPAIIGHADDQVLSALAETMKKGTSFGAPCLLENTLAEMVISAVPSIEMVRFVNSGTEACMGALRLARAYTGKEKIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATNETLTAPFNDFAAVEKIFEANKGEIAVVFLEPVVGNSGFITPKPDFLSSLRKITKENNALLVFDEVMTGFRLSYGGAQQYFGITPDITTLGKIIGGGLPVGAYGGRRDIMETVAPAGPMYQAGTLSGNPLAMTAGIETLKRIKEPGTYEYLDKITGELVQGIVEAGKKAGHAICGGHINGMFGFFFTEGPVYNFTDAKKSDTAKFAKFFWGMLAEGVYLAPSQFEAGFTSLAHTSDDIKKTIAAAEKVFREI