Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72019.t1 | XP_013462054.1 | 98 | 396 | 8 | 0 | 1 | 396 | 1 | 396 | 7.70E-226 | 792.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72019.t1 | Q8RXE9 | 71.3 | 366 | 95 | 2 | 33 | 396 | 49 | 406 | 2.6e-153 | 543.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72019.t1 | A0A072V216 | 98.0 | 396 | 8 | 0 | 1 | 396 | 1 | 396 | 5.5e-226 | 792.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene72019 | 0.854185 | 1.46E-61 | -1.69E-46 |
| MS.gene049173 | MS.gene72019 | 0.838997 | 2.06E-57 | -1.69E-46 |
| MS.gene049217 | MS.gene72019 | 0.870226 | 1.71E-66 | -1.69E-46 |
| MS.gene049222 | MS.gene72019 | 0.880559 | 4.97E-70 | -1.69E-46 |
| MS.gene049232 | MS.gene72019 | 0.856802 | 2.51E-62 | -1.69E-46 |
| MS.gene049285 | MS.gene72019 | 0.908769 | 1.19E-81 | -1.69E-46 |
| MS.gene049320 | MS.gene72019 | 0.887446 | 1.42E-72 | -1.69E-46 |
| MS.gene049609 | MS.gene72019 | 0.813776 | 2.16E-51 | -1.69E-46 |
| MS.gene049627 | MS.gene72019 | 0.869693 | 2.56E-66 | -1.69E-46 |
| MS.gene049633 | MS.gene72019 | 0.825325 | 4.99E-54 | -1.69E-46 |
| MS.gene05010 | MS.gene72019 | 0.857687 | 1.38E-62 | -1.69E-46 |
| MS.gene050163 | MS.gene72019 | 0.902854 | 6.33E-79 | -1.69E-46 |
| MS.gene050165 | MS.gene72019 | 0.913042 | 9.73E-84 | -1.69E-46 |
| MS.gene050216 | MS.gene72019 | 0.823099 | 1.66E-53 | -1.69E-46 |
| MS.gene050323 | MS.gene72019 | 0.826987 | 2.01E-54 | -1.69E-46 |
| MS.gene050333 | MS.gene72019 | 0.925125 | 2.80E-90 | -1.69E-46 |
| MS.gene050444 | MS.gene72019 | 0.808819 | 2.57E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene72019 | 0.823096 | 1.66E-53 | -1.69E-46 |
| MS.gene050504 | MS.gene72019 | 0.883274 | 5.15E-71 | -1.69E-46 |
| MS.gene050518 | MS.gene72019 | 0.901213 | 3.36E-78 | -1.69E-46 |
| MS.gene050577 | MS.gene72019 | 0.825595 | 4.30E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene72019 | 0.882708 | 8.30E-71 | -1.69E-46 |
| MS.gene050675 | MS.gene72019 | 0.863421 | 2.52E-64 | -1.69E-46 |
| MS.gene050699 | MS.gene72019 | 0.863563 | 2.28E-64 | -1.69E-46 |
| MS.gene050747 | MS.gene72019 | 0.81468 | 1.36E-51 | -1.69E-46 |
| MS.gene050772 | MS.gene72019 | 0.879859 | 8.83E-70 | -1.69E-46 |
| MS.gene050868 | MS.gene72019 | 0.814051 | 1.88E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene72019 | 0.81083 | 9.49E-51 | -1.69E-46 |
| MS.gene050876 | MS.gene72019 | 0.894668 | 1.99E-75 | -1.69E-46 |
| MS.gene05087 | MS.gene72019 | 0.880796 | 4.09E-70 | -1.69E-46 |
| MS.gene050904 | MS.gene72019 | 0.860807 | 1.60E-63 | -1.69E-46 |
| MS.gene050950 | MS.gene72019 | 0.811317 | 7.44E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene72019 | 0.863452 | 2.46E-64 | -1.69E-46 |
| MS.gene05100 | MS.gene72019 | 0.855948 | 4.48E-62 | -1.69E-46 |
| MS.gene051228 | MS.gene72019 | 0.805837 | 1.10E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene72019 | 0.830671 | 2.58E-55 | -1.69E-46 |
| MS.gene051366 | MS.gene72019 | -0.802303 | 5.98E-49 | -1.69E-46 |
| MS.gene051367 | MS.gene72019 | -0.800211 | 1.60E-48 | -1.69E-46 |
| MS.gene051551 | MS.gene72019 | 0.825369 | 4.87E-54 | -1.69E-46 |
| MS.gene051564 | MS.gene72019 | 0.801939 | 7.11E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene72019 | 0.828925 | 6.85E-55 | -1.69E-46 |
| MS.gene051810 | MS.gene72019 | 0.863524 | 2.34E-64 | -1.69E-46 |
| MS.gene051858 | MS.gene72019 | 0.84386 | 1.08E-58 | -1.69E-46 |
| MS.gene051949 | MS.gene72019 | 0.860225 | 2.40E-63 | -1.69E-46 |
| MS.gene052164 | MS.gene72019 | 0.804676 | 1.93E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene72019 | 0.861269 | 1.16E-63 | -1.69E-46 |
| MS.gene052379 | MS.gene72019 | 0.815663 | 8.24E-52 | -1.69E-46 |
| MS.gene052482 | MS.gene72019 | 0.842159 | 3.07E-58 | -1.69E-46 |
| MS.gene052486 | MS.gene72019 | 0.858901 | 5.99E-63 | -1.69E-46 |
| MS.gene052670 | MS.gene72019 | 0.807146 | 5.83E-50 | -1.69E-46 |
| MS.gene052822 | MS.gene72019 | 0.819568 | 1.08E-52 | -1.69E-46 |
| MS.gene052872 | MS.gene72019 | 0.800669 | 1.29E-48 | -1.69E-46 |
| MS.gene052916 | MS.gene72019 | 0.868631 | 5.66E-66 | -1.69E-46 |
| MS.gene052966 | MS.gene72019 | 0.825332 | 4.97E-54 | -1.69E-46 |
| MS.gene053009 | MS.gene72019 | 0.812015 | 5.24E-51 | -1.69E-46 |
| MS.gene053203 | MS.gene72019 | 0.817682 | 2.90E-52 | -1.69E-46 |
| MS.gene053207 | MS.gene72019 | 0.80472 | 1.89E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene72019 | 0.875796 | 2.32E-68 | -1.69E-46 |
| MS.gene053286 | MS.gene72019 | 0.876565 | 1.26E-68 | -1.69E-46 |
| MS.gene053322 | MS.gene72019 | 0.810299 | 1.23E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene72019 | 0.832381 | 9.77E-56 | -1.69E-46 |
| MS.gene053632 | MS.gene72019 | 0.819895 | 9.13E-53 | -1.69E-46 |
| MS.gene053824 | MS.gene72019 | 0.822633 | 2.13E-53 | -1.69E-46 |
| MS.gene053916 | MS.gene72019 | 0.809996 | 1.44E-50 | -1.69E-46 |
| MS.gene054374 | MS.gene72019 | 0.834705 | 2.57E-56 | -1.69E-46 |
| MS.gene054408 | MS.gene72019 | 0.806083 | 9.77E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene72019 | 0.810415 | 1.17E-50 | -1.69E-46 |
| MS.gene054600 | MS.gene72019 | 0.848994 | 4.30E-60 | -1.69E-46 |
| MS.gene054638 | MS.gene72019 | 0.851615 | 7.91E-61 | -1.69E-46 |
| MS.gene054642 | MS.gene72019 | 0.89356 | 5.61E-75 | -1.69E-46 |
| MS.gene05470 | MS.gene72019 | 0.800298 | 1.54E-48 | -1.69E-46 |
| MS.gene054954 | MS.gene72019 | 0.896707 | 2.85E-76 | -1.69E-46 |
| MS.gene05505 | MS.gene72019 | 0.805415 | 1.35E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene72019 | 0.803049 | 4.20E-49 | -1.69E-46 |
| MS.gene055333 | MS.gene72019 | -0.845443 | 4.05E-59 | -1.69E-46 |
| MS.gene055362 | MS.gene72019 | 0.88878 | 4.36E-73 | -1.69E-46 |
| MS.gene055397 | MS.gene72019 | 0.808872 | 2.50E-50 | -1.69E-46 |
| MS.gene055499 | MS.gene72019 | 0.820021 | 8.55E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene72019 | 0.86323 | 2.89E-64 | -1.69E-46 |
| MS.gene055577 | MS.gene72019 | 0.852947 | 3.30E-61 | -1.69E-46 |
| MS.gene055634 | MS.gene72019 | 0.911659 | 4.73E-83 | -1.69E-46 |
| MS.gene055636 | MS.gene72019 | 0.86788 | 9.87E-66 | -1.69E-46 |
| MS.gene055638 | MS.gene72019 | 0.89195 | 2.49E-74 | -1.69E-46 |
| MS.gene055647 | MS.gene72019 | 0.817234 | 3.67E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene72019 | 0.843807 | 1.12E-58 | -1.69E-46 |
| MS.gene055748 | MS.gene72019 | 0.841902 | 3.59E-58 | -1.69E-46 |
| MS.gene055750 | MS.gene72019 | 0.853741 | 1.96E-61 | -1.69E-46 |
| MS.gene055751 | MS.gene72019 | 0.859237 | 4.75E-63 | -1.69E-46 |
| MS.gene055776 | MS.gene72019 | 0.83992 | 1.19E-57 | -1.69E-46 |
| MS.gene055849 | MS.gene72019 | 0.858637 | 7.18E-63 | -1.69E-46 |
| MS.gene05592 | MS.gene72019 | 0.809758 | 1.62E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene72019 | 0.829678 | 4.50E-55 | -1.69E-46 |
| MS.gene056083 | MS.gene72019 | 0.803845 | 2.87E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene72019 | 0.851218 | 1.02E-60 | -1.69E-46 |
| MS.gene056409 | MS.gene72019 | 0.843932 | 1.03E-58 | -1.69E-46 |
| MS.gene056449 | MS.gene72019 | 0.844662 | 6.58E-59 | -1.69E-46 |
| MS.gene056450 | MS.gene72019 | 0.839892 | 1.21E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene72019 | 0.851392 | 9.15E-61 | -1.69E-46 |
| MS.gene056510 | MS.gene72019 | 0.878428 | 2.83E-69 | -1.69E-46 |
| MS.gene056549 | MS.gene72019 | 0.865734 | 4.76E-65 | -1.69E-46 |
| MS.gene056610 | MS.gene72019 | 0.828643 | 8.02E-55 | -1.69E-46 |
| MS.gene056657 | MS.gene72019 | 0.897476 | 1.36E-76 | -1.69E-46 |
| MS.gene056692 | MS.gene72019 | 0.872004 | 4.44E-67 | -1.69E-46 |
| MS.gene056898 | MS.gene72019 | 0.818961 | 1.49E-52 | -1.69E-46 |
| MS.gene056910 | MS.gene72019 | 0.834219 | 3.40E-56 | -1.69E-46 |
| MS.gene057129 | MS.gene72019 | 0.824802 | 6.63E-54 | -1.69E-46 |
| MS.gene057148 | MS.gene72019 | 0.807191 | 5.70E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene72019 | 0.826235 | 3.03E-54 | -1.69E-46 |
| MS.gene057416 | MS.gene72019 | 0.846306 | 2.36E-59 | -1.69E-46 |
| MS.gene057831 | MS.gene72019 | 0.845641 | 3.58E-59 | -1.69E-46 |
| MS.gene058323 | MS.gene72019 | 0.803789 | 2.95E-49 | -1.69E-46 |
| MS.gene058335 | MS.gene72019 | 0.834138 | 3.56E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene72019 | 0.825096 | 5.65E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene72019 | 0.886918 | 2.25E-72 | -1.69E-46 |
| MS.gene058544 | MS.gene72019 | 0.813821 | 2.11E-51 | -1.69E-46 |
| MS.gene058719 | MS.gene72019 | 0.851753 | 7.23E-61 | -1.69E-46 |
| MS.gene058723 | MS.gene72019 | 0.832485 | 9.20E-56 | -1.69E-46 |
| MS.gene058773 | MS.gene72019 | 0.896027 | 5.47E-76 | -1.69E-46 |
| MS.gene059022 | MS.gene72019 | 0.894162 | 3.20E-75 | -1.69E-46 |
| MS.gene059023 | MS.gene72019 | 0.845956 | 2.94E-59 | -1.69E-46 |
| MS.gene059026 | MS.gene72019 | 0.829436 | 5.15E-55 | -1.69E-46 |
| MS.gene059029 | MS.gene72019 | 0.889489 | 2.31E-73 | -1.69E-46 |
| MS.gene059079 | MS.gene72019 | 0.8525 | 4.43E-61 | -1.69E-46 |
| MS.gene05912 | MS.gene72019 | 0.818641 | 1.76E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene72019 | 0.81477 | 1.30E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene72019 | 0.810057 | 1.39E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene72019 | 0.896289 | 4.26E-76 | -1.69E-46 |
| MS.gene059718 | MS.gene72019 | 0.866821 | 2.15E-65 | -1.69E-46 |
| MS.gene059756 | MS.gene72019 | 0.84922 | 3.72E-60 | -1.69E-46 |
| MS.gene059801 | MS.gene72019 | 0.846953 | 1.57E-59 | -1.69E-46 |
| MS.gene059837 | MS.gene72019 | 0.801205 | 1.01E-48 | -1.69E-46 |
| MS.gene059865 | MS.gene72019 | 0.856273 | 3.60E-62 | -1.69E-46 |
| MS.gene059902 | MS.gene72019 | 0.835786 | 1.37E-56 | -1.69E-46 |
| MS.gene059960 | MS.gene72019 | 0.822221 | 2.66E-53 | -1.69E-46 |
| MS.gene060193 | MS.gene72019 | 0.816331 | 5.84E-52 | -1.69E-46 |
| MS.gene060703 | MS.gene72019 | 0.869073 | 4.07E-66 | -1.69E-46 |
| MS.gene060762 | MS.gene72019 | 0.866938 | 1.98E-65 | -1.69E-46 |
| MS.gene06077 | MS.gene72019 | 0.875843 | 2.24E-68 | -1.69E-46 |
| MS.gene06092 | MS.gene72019 | 0.810078 | 1.38E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene72019 | 0.841912 | 3.56E-58 | -1.69E-46 |
| MS.gene061134 | MS.gene72019 | 0.840664 | 7.59E-58 | -1.69E-46 |
| MS.gene061150 | MS.gene72019 | 0.871004 | 9.51E-67 | -1.69E-46 |
| MS.gene061171 | MS.gene72019 | 0.917387 | 5.65E-86 | -1.69E-46 |
| MS.gene061200 | MS.gene72019 | 0.858207 | 9.66E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72019.t1 | MTR_3g110360 | 97.980 | 396 | 8 | 0 | 1 | 396 | 1 | 396 | 0.0 | 814 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72019.t1 | AT2G25840 | 70.350 | 371 | 96 | 3 | 32 | 396 | 48 | 410 | 0.0 | 525 |
| MS.gene72019.t1 | AT2G25840 | 71.117 | 367 | 96 | 2 | 32 | 396 | 48 | 406 | 0.0 | 523 |
| MS.gene72019.t1 | AT2G25840 | 68.937 | 367 | 92 | 3 | 32 | 396 | 48 | 394 | 3.43e-176 | 496 |
| MS.gene72019.t1 | AT2G25840 | 72.485 | 338 | 83 | 2 | 32 | 367 | 48 | 377 | 7.51e-170 | 480 |
Find 110 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAATTGGGTTGCCCTTC+AGG | 0.223058 | 3.4:+95622609 | MS.gene72019:CDS |
| ATATAATTACTTACATCTTT+AGG | 0.251940 | 3.4:-95627999 | None:intergenic |
| TTATTACATTCAGGCCTTTC+AGG | 0.255757 | 3.4:-95629912 | None:intergenic |
| GGTTATTTAGATAAAGTATT+AGG | 0.263586 | 3.4:+95635079 | MS.gene72019:CDS |
| TCTATATACCAGCTCGCTTC+TGG | 0.268429 | 3.4:+95629942 | MS.gene72019:CDS |
| AGGATCAAGAATATTGATTC+TGG | 0.275889 | 3.4:-95627979 | None:intergenic |
| GTGCTCCAGTTGGAGGTATA+AGG | 0.284117 | 3.4:-95626843 | None:intergenic |
| TGACCATTTGCAACCCATTC+AGG | 0.298866 | 3.4:+95630937 | MS.gene72019:CDS |
| CACCCCACATGCCAGGTAAA+TGG | 0.299294 | 3.4:-95623877 | None:intergenic |
| GCGAGGAGGTACTATATTTA+AGG | 0.309583 | 3.4:+95626721 | MS.gene72019:CDS |
| ACTTCGGTGCCATCAAGAAT+TGG | 0.323313 | 3.4:+95622596 | MS.gene72019:CDS |
| ATGAATGCCAAAACATGAAC+TGG | 0.328520 | 3.4:+95630879 | MS.gene72019:CDS |
| GAGCGGGTTAATAATTTATA+CGG | 0.346341 | 3.4:+95626572 | MS.gene72019:CDS |
| TTCTGATATACTTCTATATC+AGG | 0.347370 | 3.4:+95626253 | MS.gene72019:CDS |
| TTTAGGGAGATGATGAAGTT+GGG | 0.352166 | 3.4:+95626198 | MS.gene72019:intron |
| GAGGAACTCATGTCAGATTC+AGG | 0.363427 | 3.4:+95635058 | MS.gene72019:CDS |
| TGAAGATCAAAAGCAACATT+TGG | 0.366304 | 3.4:+95626529 | MS.gene72019:CDS |
| GAGAGAAGATTATTACATTC+AGG | 0.367486 | 3.4:-95629921 | None:intergenic |
| GGAAGAAAGTGGAAGAAATT+AGG | 0.367772 | 3.4:+95626596 | MS.gene72019:CDS |
| TGACTCACAACAATTATCTA+AGG | 0.375984 | 3.4:+95623836 | MS.gene72019:CDS |
| ATGTGCCCCAGTTCATGTTT+TGG | 0.386175 | 3.4:-95630886 | None:intergenic |
| TTTAATATTTGGAACCTGAA+TGG | 0.387697 | 3.4:-95630951 | None:intergenic |
| CCTTCGACAGGCCATCGGTT+AGG | 0.400959 | 3.4:-95626876 | None:intergenic |
| TTAATATTTGGAACCTGAAT+GGG | 0.412013 | 3.4:-95630950 | None:intergenic |
| TGCTCCAGTTGGAGGTATAA+GGG | 0.412909 | 3.4:-95626842 | None:intergenic |
| TGAATTACTTTACAGAGGTC+GGG | 0.426142 | 3.4:-95622440 | None:intergenic |
| TTTGACTTATCCTGTTCTGA+TGG | 0.435313 | 3.4:+95626229 | MS.gene72019:CDS |
| CATAATGTTTACCAAGCAAT+GGG | 0.438343 | 3.4:+95635145 | MS.gene72019:CDS |
| CTTCGACAGGCCATCGGTTA+GGG | 0.441098 | 3.4:-95626875 | None:intergenic |
| CTTCGGTGCCATCAAGAATT+GGG | 0.452924 | 3.4:+95622597 | MS.gene72019:CDS |
| ATATCAGAAGCCATCAGAAC+AGG | 0.454330 | 3.4:-95626239 | None:intergenic |
| AAGGGCAACCCAATTCTTGA+TGG | 0.459066 | 3.4:-95622605 | None:intergenic |
| CTAAGTTCTGTAACACCAAT+CGG | 0.472134 | 3.4:+95624070 | MS.gene72019:CDS |
| GTTTCCAAGGTGAATTGAAC+CGG | 0.473912 | 3.4:-95622572 | None:intergenic |
| TGCAGGAAACGAGTTGTCTC+CGG | 0.476909 | 3.4:+95622538 | MS.gene72019:intron |
| GTTGGAGGTATAAGGGGCTC+TGG | 0.477090 | 3.4:-95626835 | None:intergenic |
| ATCAAGGCATCTGTTAAAAG+AGG | 0.477251 | 3.4:-95630914 | None:intergenic |
| TCTTTAACAGGTTCGCTATG+AGG | 0.480999 | 3.4:+95635039 | MS.gene72019:intron |
| GACATAATCCGTGCTCCAGT+TGG | 0.481297 | 3.4:-95626853 | None:intergenic |
| AAAGTGTAAAGAACCTTTGA+AGG | 0.481470 | 3.4:-95623903 | None:intergenic |
| CATGTGCACGGACATGAGAC+TGG | 0.494374 | 3.4:-95624030 | None:intergenic |
| TCATAATGTTTACCAAGCAA+TGG | 0.495097 | 3.4:+95635144 | MS.gene72019:CDS |
| GAGCCCCTTATACCTCCAAC+TGG | 0.497992 | 3.4:+95626838 | MS.gene72019:CDS |
| TTAGGGAGATGATGAAGTTG+GGG | 0.498336 | 3.4:+95626199 | MS.gene72019:intron |
| CAGCCATTTACCTGGCATGT+GGG | 0.499723 | 3.4:+95623874 | MS.gene72019:CDS |
| TTAGATAAAGTATTAGGAGA+AGG | 0.502751 | 3.4:+95635085 | MS.gene72019:CDS |
| GGGAGTCTGTGGAGAGGTAT+CGG | 0.509087 | 3.4:-95622409 | None:intergenic |
| TCCTCGAAAATCCCATTGCT+TGG | 0.509933 | 3.4:-95635156 | None:intergenic |
| GTGAATTACTTTACAGAGGT+CGG | 0.512876 | 3.4:-95622441 | None:intergenic |
| ACAGAGGTCGGGGAAGGAGT+GGG | 0.518890 | 3.4:-95622429 | None:intergenic |
| ATTTATACGGAGGAAGAAAG+TGG | 0.524891 | 3.4:+95626585 | MS.gene72019:CDS |
| ATGTGGGGTGGATCCTTCAA+AGG | 0.528124 | 3.4:+95623890 | MS.gene72019:CDS |
| TACAGAGGTCGGGGAAGGAG+TGG | 0.529375 | 3.4:-95622430 | None:intergenic |
| GACCCGTGACTTAGCTGAGC+GGG | 0.529424 | 3.4:+95626556 | MS.gene72019:CDS |
| GTCAACCGCAGCCATTTACC+TGG | 0.531223 | 3.4:+95623866 | MS.gene72019:CDS |
| TTGATTCTGGATTGATCAGA+AGG | 0.532664 | 3.4:-95627966 | None:intergenic |
| CGATACACTTTACTTCATTG+TGG | 0.534595 | 3.4:+95623103 | MS.gene72019:CDS |
| AAGGATCCACCCCACATGCC+AGG | 0.536997 | 3.4:-95623884 | None:intergenic |
| GAACCTGAATGGGTTGCAAA+TGG | 0.538075 | 3.4:-95630940 | None:intergenic |
| GCAAAACTGATTCATTTCCA+AGG | 0.538524 | 3.4:+95629689 | MS.gene72019:CDS |
| TACTTTACAGAGGTCGGGGA+AGG | 0.539422 | 3.4:-95622435 | None:intergenic |
| GTCTCCGGAGTTCAACCTAC+CGG | 0.543876 | 3.4:+95622553 | MS.gene72019:CDS |
| GGGGAAGGAGTGGGAGTCTG+TGG | 0.546228 | 3.4:-95622420 | None:intergenic |
| TTAAAGAGAAATCTCGCAAG+GGG | 0.560100 | 3.4:+95624116 | MS.gene72019:CDS |
| CATTTACCTGGCATGTGGGG+TGG | 0.560694 | 3.4:+95623878 | MS.gene72019:CDS |
| GGGTTGCAAATGGTCAATCA+AGG | 0.563217 | 3.4:-95630930 | None:intergenic |
| ATTCACCTTGGAAACTACTT+CGG | 0.563842 | 3.4:+95622580 | MS.gene72019:CDS |
| ATAATCCGTGCTCCAGTTGG+AGG | 0.567908 | 3.4:-95626850 | None:intergenic |
| TGAGCGAGCGAGTACAGCGA+TGG | 0.575580 | 3.4:-95622249 | None:intergenic |
| GAATTACTTTACAGAGGTCG+GGG | 0.582489 | 3.4:-95622439 | None:intergenic |
| TGAATGCCAAAACATGAACT+GGG | 0.584044 | 3.4:+95630880 | MS.gene72019:CDS |
| CCTAACCGATGGCCTGTCGA+AGG | 0.585232 | 3.4:+95626876 | MS.gene72019:CDS |
| GCAGCCATTTACCTGGCATG+TGG | 0.585942 | 3.4:+95623873 | MS.gene72019:CDS |
| ACATGCCAGGTAAATGGCTG+CGG | 0.588746 | 3.4:-95623871 | None:intergenic |
| GAAAGTGGAAGAAATTAGGC+GGG | 0.590519 | 3.4:+95626600 | MS.gene72019:CDS |
| CCAAGGTGAATTGAACCGGT+AGG | 0.593608 | 3.4:-95622568 | None:intergenic |
| AGCCATTTACCTGGCATGTG+GGG | 0.594275 | 3.4:+95623875 | MS.gene72019:CDS |
| CTTCATTGTGGATCTGCATG+CGG | 0.594642 | 3.4:+95623115 | MS.gene72019:CDS |
| GTTCTGTAACACCAATCGGC+TGG | 0.595560 | 3.4:+95624074 | MS.gene72019:CDS |
| AACCCGCTCAGCTAAGTCAC+GGG | 0.596314 | 3.4:-95626558 | None:intergenic |
| ATTCTGTTTAGCCAGCCGAT+TGG | 0.597972 | 3.4:-95624085 | None:intergenic |
| AGTGGTGCAGCATCGAATGG+TGG | 0.600717 | 3.4:-95622382 | None:intergenic |
| GTTTAAAGAGAAATCTCGCA+AGG | 0.604667 | 3.4:+95624114 | MS.gene72019:CDS |
| TAGAGTGGTGCAGCATCGAA+TGG | 0.604960 | 3.4:-95622385 | None:intergenic |
| AGGAGTGGGAGTCTGTGGAG+AGG | 0.605509 | 3.4:-95622415 | None:intergenic |
| TGGCACCGAAGTAGTTTCCA+AGG | 0.610352 | 3.4:-95622585 | None:intergenic |
| GTGGTGCAGCATCGAATGGT+GGG | 0.610479 | 3.4:-95622381 | None:intergenic |
| TGGAAATCGACAATCCTGAA+AGG | 0.612101 | 3.4:+95629898 | MS.gene72019:CDS |
| CCTACCGGTTCAATTCACCT+TGG | 0.612153 | 3.4:+95622568 | MS.gene72019:CDS |
| GCTCCAGTTGGAGGTATAAG+GGG | 0.612995 | 3.4:-95626841 | None:intergenic |
| TAACCCGCTCAGCTAAGTCA+CGG | 0.613562 | 3.4:-95626559 | None:intergenic |
| TCCATTTATGACAGGCGAGG+AGG | 0.617031 | 3.4:+95626707 | MS.gene72019:intron |
| CGGATTATGTCCCTAACCGA+TGG | 0.620445 | 3.4:+95626865 | MS.gene72019:CDS |
| CGGGTTAATAATTTATACGG+AGG | 0.621370 | 3.4:+95626575 | MS.gene72019:CDS |
| GATAATTGTTGTGAGTCATG+AGG | 0.622880 | 3.4:-95623831 | None:intergenic |
| TTATACCTCCAACTGGAGCA+CGG | 0.623233 | 3.4:+95626845 | MS.gene72019:CDS |
| TTTAAAGAGAAATCTCGCAA+GGG | 0.626850 | 3.4:+95624115 | MS.gene72019:CDS |
| GATGGGTGTTTGTCATTACG+CGG | 0.627298 | 3.4:+95622209 | None:intergenic |
| TAAAACAAGCATAACCTGAA+GGG | 0.629037 | 3.4:-95622623 | None:intergenic |
| TGGAGAGGTATCGGATAGAG+TGG | 0.629202 | 3.4:-95622400 | None:intergenic |
| AGAAAGTGGAAGAAATTAGG+CGG | 0.631034 | 3.4:+95626599 | MS.gene72019:CDS |
| GAGCGAGCGAGTACAGCGAT+GGG | 0.640452 | 3.4:-95622248 | None:intergenic |
| ACATCAATTCTACATGTGCA+CGG | 0.655753 | 3.4:-95624042 | None:intergenic |
| AGCGATGGGACGAAGCATGA+CGG | 0.662841 | 3.4:-95622234 | None:intergenic |
| TGGTGTGAATTACTTTACAG+AGG | 0.664922 | 3.4:-95622445 | None:intergenic |
| TGAACCGGTAGGTTGAACTC+CGG | 0.671389 | 3.4:-95622557 | None:intergenic |
| GTGCACATGTAGAATTGATG+TGG | 0.674613 | 3.4:+95624044 | MS.gene72019:CDS |
| GAATGCCAAAACATGAACTG+GGG | 0.703767 | 3.4:+95630881 | MS.gene72019:CDS |
| TAAAGAGAAATCTCGCAAGG+GGG | 0.735812 | 3.4:+95624117 | MS.gene72019:CDS |
| TGACCCGTGACTTAGCTGAG+CGG | 0.744321 | 3.4:+95626555 | MS.gene72019:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 95622210 | 95635186 | 95622210 | ID=MS.gene72019 |
| chr3.4 | mRNA | 95622210 | 95635186 | 95622210 | ID=MS.gene72019.t1;Parent=MS.gene72019 |
| chr3.4 | exon | 95622210 | 95622256 | 95622210 | ID=MS.gene72019.t1.exon1;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95622210 | 95622256 | 95622210 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95622341 | 95622454 | 95622341 | ID=MS.gene72019.t1.exon2;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95622341 | 95622454 | 95622341 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95622543 | 95622630 | 95622543 | ID=MS.gene72019.t1.exon3;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95622543 | 95622630 | 95622543 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95623095 | 95623136 | 95623095 | ID=MS.gene72019.t1.exon4;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95623095 | 95623136 | 95623095 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95623822 | 95623911 | 95623822 | ID=MS.gene72019.t1.exon5;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95623822 | 95623911 | 95623822 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95624016 | 95624138 | 95624016 | ID=MS.gene72019.t1.exon6;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95624016 | 95624138 | 95624016 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95626203 | 95626274 | 95626203 | ID=MS.gene72019.t1.exon7;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95626203 | 95626274 | 95626203 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95626509 | 95626621 | 95626509 | ID=MS.gene72019.t1.exon8;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95626509 | 95626621 | 95626509 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95626721 | 95626742 | 95626721 | ID=MS.gene72019.t1.exon9;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95626721 | 95626742 | 95626721 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95626832 | 95626897 | 95626832 | ID=MS.gene72019.t1.exon10;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95626832 | 95626897 | 95626832 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95627951 | 95628007 | 95627951 | ID=MS.gene72019.t1.exon11;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95627951 | 95628007 | 95627951 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95629664 | 95629710 | 95629664 | ID=MS.gene72019.t1.exon12;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95629664 | 95629710 | 95629664 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95629896 | 95629977 | 95629896 | ID=MS.gene72019.t1.exon13;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95629896 | 95629977 | 95629896 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95630869 | 95630958 | 95630869 | ID=MS.gene72019.t1.exon14;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95630869 | 95630958 | 95630869 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| chr3.4 | exon | 95635049 | 95635186 | 95635049 | ID=MS.gene72019.t1.exon15;Parent=MS.gene72019.t1 |
| chr3.4 | CDS | 95635049 | 95635186 | 95635049 | ID=cds.MS.gene72019.t1;Parent=MS.gene72019.t1 |
| Gene Sequence |
| Protein sequence |
