AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88929


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88929.t1 MTR_1g026550 96.716 335 9 1 1 335 1 333 0.0 620
MS.gene88929.t1 MTR_1g026550 95.708 233 8 1 1 233 1 231 3.05e-146 412
MS.gene88929.t1 MTR_5g097280 46.215 251 117 7 78 324 17 253 1.33e-63 202
MS.gene88929.t1 MTR_6g011870 48.133 241 113 7 85 324 24 253 1.90e-62 200
MS.gene88929.t1 MTR_4g094605 47.934 242 113 7 85 324 24 254 4.63e-62 199
MS.gene88929.t1 MTR_6g011880 47.718 241 114 7 85 324 24 253 4.90e-62 199
MS.gene88929.t1 MTR_6g012080 51.389 216 94 6 109 324 49 253 5.51e-62 199
MS.gene88929.t1 MTR_6g012110 50.901 222 98 6 103 324 43 253 8.86e-62 198
MS.gene88929.t1 MTR_6g011890 50.926 216 95 6 109 324 49 253 2.12e-61 197
MS.gene88929.t1 MTR_2g081090 46.154 221 110 3 104 324 14 225 9.95e-59 189
MS.gene88929.t1 MTR_2g081090 46.575 219 108 3 106 324 43 252 2.24e-58 189
MS.gene88929.t1 MTR_6g043600 44.298 228 96 6 97 324 21 217 4.87e-51 169
MS.gene88929.t1 MTR_6g060175 44.444 234 114 4 95 326 57 276 1.23e-49 167
MS.gene88929.t1 MTR_6g060175 42.308 234 109 5 95 326 57 266 3.24e-42 148
MS.gene88929.t1 MTR_3g101670 39.669 242 105 7 105 331 49 264 1.15e-40 143
MS.gene88929.t1 MTR_8g023790 31.868 273 142 7 72 330 24 266 1.01e-35 130
MS.gene88929.t1 MTR_6g033320 39.500 200 99 7 127 325 56 234 2.33e-35 129
MS.gene88929.t1 MTR_3g435460 38.208 212 99 8 127 330 63 250 4.51e-34 125
MS.gene88929.t1 MTR_2g042720 36.916 214 107 5 127 331 72 266 4.06e-33 124
MS.gene88929.t1 MTR_5g098785 36.245 229 106 8 128 335 68 277 9.75e-33 123
MS.gene88929.t1 MTR_5g098780 36.245 229 106 8 128 335 66 275 9.82e-33 123
MS.gene88929.t1 MTR_3g435460 37.745 204 95 8 134 329 9 188 6.41e-31 115
MS.gene88929.t1 MTR_4g015570 34.470 264 98 11 114 331 54 288 9.04e-29 112
MS.gene88929.t1 MTR_5g098770 53.333 75 35 0 255 329 17 91 2.43e-22 90.1
MS.gene88929.t1 MTR_3g070340 30.131 229 90 6 127 310 67 270 7.33e-18 82.8
MS.gene88929.t1 MTR_2g436960 48.684 76 34 2 255 330 29 99 1.28e-17 77.4
MS.gene88929.t1 MTR_0003s0060 45.333 75 36 2 255 329 22 91 5.55e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88929.t1 AT1G76570 76.744 301 63 2 37 331 28 327 2.15e-174 487
MS.gene88929.t1 AT3G27690 50.655 229 96 6 99 324 72 286 8.97e-67 212
MS.gene88929.t1 AT3G27690 50.655 229 96 6 99 324 40 254 1.07e-66 211
MS.gene88929.t1 AT2G05100 45.489 266 125 8 65 324 2 253 3.96e-65 207
MS.gene88929.t1 AT2G05070 49.782 229 98 6 99 324 39 253 5.54e-65 206
MS.gene88929.t1 AT1G29930 49.776 223 102 6 102 324 43 255 6.07e-62 199
MS.gene88929.t1 AT1G29920 49.776 223 102 6 102 324 43 255 7.86e-62 198
MS.gene88929.t1 AT1G29910 49.776 223 102 6 102 324 43 255 7.86e-62 198
MS.gene88929.t1 AT2G34430 49.123 228 106 6 97 324 37 254 2.55e-61 197
MS.gene88929.t1 AT2G34420 49.776 223 102 6 102 324 41 253 4.73e-61 196
MS.gene88929.t1 AT5G54270 46.119 219 109 3 106 324 44 253 9.99e-59 190
MS.gene88929.t1 AT2G05100 44.400 250 119 8 65 308 2 237 1.49e-53 179
MS.gene88929.t1 AT4G10340 47.297 222 97 5 109 326 62 267 4.51e-48 163
MS.gene88929.t1 AT1G45474 38.117 223 91 5 127 329 56 251 2.65e-39 139
MS.gene88929.t1 AT1G45474 38.117 223 91 5 127 329 56 251 2.65e-39 139
MS.gene88929.t1 AT3G54890 42.500 200 93 7 127 325 55 233 1.31e-37 135
MS.gene88929.t1 AT3G47470 34.979 243 123 9 96 330 36 251 4.76e-35 128
MS.gene88929.t1 AT1G19150 36.279 215 107 5 127 331 75 269 4.52e-34 126
MS.gene88929.t1 AT1G61520 35.926 270 124 11 89 335 30 273 8.81e-34 125
MS.gene88929.t1 AT1G61520 35.926 270 124 11 89 335 30 273 8.81e-34 125
MS.gene88929.t1 AT3G61470 34.234 222 116 5 120 330 53 255 3.29e-33 124
MS.gene88929.t1 AT1G61520 35.874 223 103 8 134 335 15 218 9.37e-30 113
MS.gene88929.t1 AT5G01530 34.221 263 100 10 114 331 55 289 1.43e-28 112
MS.gene88929.t1 AT3G08940 33.218 289 117 12 92 331 25 286 3.46e-28 111
MS.gene88929.t1 AT3G54890 33.333 228 85 7 99 325 38 199 1.41e-24 99.8
MS.gene88929.t1 AT3G54890 41.212 165 72 6 127 289 55 196 2.24e-23 96.7
MS.gene88929.t1 AT2G40100 32.407 216 102 9 110 310 82 268 1.26e-16 79.3
MS.gene88929.t1 AT5G28450 47.368 76 39 1 256 330 96 171 1.04e-15 74.3
MS.gene88929.t1 AT3G54890 43.529 85 41 2 127 211 55 132 1.43e-12 65.5

Find 0 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATAAAAATAATTGAAAT+CGG + 6098:83771-83790 None:intergenic 10.0%
!! AAAGTGAAAGAAATAAAAAA+TGG - 6098:86824-86843 MS.gene88929:CDS 15.0%
!! TTAATGGTAAATTAAATGAA+AGG + 6098:84092-84111 None:intergenic 15.0%
!!! AGGAATTTTTTTAATGATTA+TGG - 6098:84583-84602 MS.gene88929:intron 15.0%
!!! ATTTTCTTAATTTCTTCAAA+TGG + 6098:85209-85228 None:intergenic 15.0%
!!! GGAATTTTTTTAATGATTAT+GGG - 6098:84584-84603 MS.gene88929:intron 15.0%
!!! TTATTAGATTTTTAACTTAG+TGG - 6098:86416-86435 MS.gene88929:intron 15.0%
!! AAATAAAAAGTTTCAGTAGT+TGG - 6098:86557-86576 MS.gene88929:CDS 20.0%
!! AACCAAGTTATTAGATAAAT+AGG - 6098:85880-85899 MS.gene88929:intron 20.0%
!! ACCAAATAATTCTAATATTG+TGG + 6098:85799-85818 None:intergenic 20.0%
!! ACCAAGTTATTAGATAAATA+GGG - 6098:85881-85900 MS.gene88929:intron 20.0%
!! ACTCTTATTGTTAAATGTTA+AGG - 6098:85823-85842 MS.gene88929:intron 20.0%
!! AGTTTATAAAGAGAATTGAT+AGG - 6098:84761-84780 MS.gene88929:intron 20.0%
!! ATAACATAACATAACCATAA+TGG + 6098:84019-84038 None:intergenic 20.0%
!! ATGTTATTATTATTGCTTCT+TGG - 6098:84032-84051 MS.gene88929:intron 20.0%
!! CAATTAATAAAGTGCAATAA+TGG + 6098:86030-86049 None:intergenic 20.0%
!! CTCTTATTGTTAAATGTTAA+GGG - 6098:85824-85843 MS.gene88929:intron 20.0%
!! TCCCATAATCATTAAAAAAA+GGG + 6098:84588-84607 None:intergenic 20.0%
!! TCTTATTGTTAAATGTTAAG+GGG - 6098:85825-85844 MS.gene88929:intron 20.0%
!!! AACCATAAATTTGTTTCTTT+TGG - 6098:86588-86607 MS.gene88929:intron 20.0%
!!! CTTGAATTTAAAGTGTATTT+TGG - 6098:85634-85653 MS.gene88929:intron 20.0%
!!! TCCCTTTTTTTAATGATTAT+GGG - 6098:84902-84921 MS.gene88929:intron 20.0%
!!! TTTTTACTAAGCAAATAAAC+TGG - 6098:86113-86132 MS.gene88929:intron 20.0%
!!! TTTTTTCCAATATTTGTCAA+CGG - 6098:85175-85194 MS.gene88929:intron 20.0%
! AAAAAATTCCTTATTCATGC+CGG + 6098:84574-84593 None:intergenic 25.0%
! AACAAACTTGTGTAAGATAA+AGG + 6098:84284-84303 None:intergenic 25.0%
! ACGGTAATATTATTTAAGAG+TGG + 6098:85399-85418 None:intergenic 25.0%
! AGTTAAATTTATTCTCATGC+AGG + 6098:86074-86093 None:intergenic 25.0%
! ATTCTTATCATAAAACAGGT+TGG - 6098:86662-86681 MS.gene88929:intron 25.0%
! CATGAGAATAAATTTAACTC+AGG - 6098:86075-86094 MS.gene88929:intron 25.0%
! CATTCATTGTAAAAGTTTAC+CGG - 6098:84552-84571 MS.gene88929:intron 25.0%
! CTCCCATAATCATTAAAAAA+AGG + 6098:84589-84608 None:intergenic 25.0%
! CTTTCATAACTCATTTGTTT+GGG - 6098:86531-86550 MS.gene88929:CDS 25.0%
! GAAAATGTTTAAGGAATGAT+AGG + 6098:83832-83851 None:intergenic 25.0%
! GCCACAATATTAGAATTATT+TGG - 6098:85795-85814 MS.gene88929:intron 25.0%
! GTCCAAAAGAAACAAATTTA+TGG + 6098:86593-86612 None:intergenic 25.0%
! TCCCTATTTATCTAATAACT+TGG + 6098:85885-85904 None:intergenic 25.0%
! TGATATGAGTTTATAAAGAG+AGG + 6098:85124-85143 None:intergenic 25.0%
!! AAGTTTTCAAACCTGTTATA+TGG - 6098:85305-85324 MS.gene88929:intron 25.0%
!! AATTTTCCCTTTCTAATTAG+TGG + 6098:84336-84355 None:intergenic 25.0%
!! CATTTTCCACTAATTAGAAA+GGG - 6098:84327-84346 MS.gene88929:intron 25.0%
!!! CTCCCTTTTTTTAATGATTA+TGG - 6098:84901-84920 MS.gene88929:intron 25.0%
!!! GATTTTTAACTTAGTGGTAT+TGG - 6098:86422-86441 MS.gene88929:intron 25.0%
ACAAAACTCCTCTAAATTCA+AGG - 6098:83710-83729 MS.gene88929:CDS 30.0%
ACATAGATGCCAAATATCAT+CGG - 6098:84692-84711 MS.gene88929:intron 30.0%
ACATCATCACTAACATCATA+TGG + 6098:86380-86399 None:intergenic 30.0%
AGAAATAAAAAATGGACGCT+TGG - 6098:86832-86851 MS.gene88929:CDS 30.0%
AGCTACTGTTACTACTAATT+TGG - 6098:86638-86657 MS.gene88929:intron 30.0%
ATAACATAACCATAATGGCT+TGG + 6098:84014-84033 None:intergenic 30.0%
ATAGATGCCAAATATCATCA+GGG - 6098:84694-84713 MS.gene88929:intron 30.0%
CATATTTCCCTGATGATATT+TGG + 6098:84704-84723 None:intergenic 30.0%
CATCATCACTAACATCATAT+GGG + 6098:86379-86398 None:intergenic 30.0%
CATCTTGTAATGAGAAAGAA+AGG + 6098:84632-84651 None:intergenic 30.0%
CCAAAAGCTGAAAATGTTTA+AGG + 6098:83841-83860 None:intergenic 30.0%
CCTTTCTAATTAGTGGAAAA+TGG + 6098:84329-84348 None:intergenic 30.0%
CTCTTTATAAGACTTAGAGT+GGG + 6098:85469-85488 None:intergenic 30.0%
GAATTATTGGTATAGGGATA+AGG + 6098:85991-86010 None:intergenic 30.0%
GCCAAAGAATTATTGGTATA+GGG + 6098:85997-86016 None:intergenic 30.0%
GCTACTGTTACTACTAATTT+GGG - 6098:86639-86658 MS.gene88929:intron 30.0%
GCTTTCATAACTCATTTGTT+TGG - 6098:86530-86549 MS.gene88929:CDS 30.0%
TAACATAACCATAATGGCTT+GGG + 6098:84013-84032 None:intergenic 30.0%
TACAAATCGAACATTTCTCA+TGG - 6098:86467-86486 MS.gene88929:CDS 30.0%
TAGATAAATAGGGATGCTAA+AGG - 6098:85891-85910 MS.gene88929:intron 30.0%
TCCCTATACCAATAATTCTT+TGG - 6098:85993-86012 MS.gene88929:intron 30.0%
TGCAATATCTCAAAGCTTAA+TGG + 6098:84108-84127 None:intergenic 30.0%
TGCCAAAGAATTATTGGTAT+AGG + 6098:85998-86017 None:intergenic 30.0%
TGGGAGATACAAATATAACA+TGG - 6098:84921-84940 MS.gene88929:intron 30.0%
TGGGATTCTTATCATAAAAC+AGG - 6098:86658-86677 MS.gene88929:intron 30.0%
TGTCAGTTAGTTATAAAGAG+AGG + 6098:84805-84824 None:intergenic 30.0%
TTTCAAACCTGTTATATGGT+GGG - 6098:85309-85328 MS.gene88929:intron 30.0%
! AAACATACGAAAGCATATCA+CGG + 6098:85418-85437 None:intergenic 30.0%
! AACATTTTCAGCTTTTGGTA+TGG - 6098:83843-83862 MS.gene88929:intron 30.0%
! ATATGATGTTAGTGATGATG+TGG - 6098:86379-86398 MS.gene88929:intron 30.0%
! ATCAATTGTGTGCTTTGTTA+TGG - 6098:85246-85265 MS.gene88929:intron 30.0%
! CCATTTTCCACTAATTAGAA+AGG - 6098:84326-84345 MS.gene88929:intron 30.0%
! CCTTAAACATTTTCAGCTTT+TGG - 6098:83838-83857 MS.gene88929:intron 30.0%
! TCAATTGTGTGCTTTGTTAT+GGG - 6098:85247-85266 MS.gene88929:intron 30.0%
! TCTTTAATTTCAAGAGACGA+AGG + 6098:86501-86520 None:intergenic 30.0%
! TTAGTGGTATTGGATGTATT+GGG - 6098:86432-86451 MS.gene88929:CDS 30.0%
! TTTTCAAACCTGTTATATGG+TGG - 6098:85308-85327 MS.gene88929:intron 30.0%
!! AGAAAGTGCCAAAGAATTAT+TGG + 6098:86004-86023 None:intergenic 30.0%
AAAAGGACAAGAGAGAAAGA+CGG + 6098:85968-85987 None:intergenic 35.0%
AAACAAGATGAAGAAGAGGA+AGG + 6098:83477-83496 None:intergenic 35.0%
AAAGTTTACCGGCATGAATA+AGG - 6098:84563-84582 MS.gene88929:intron 35.0%
AAAGTTTACCGGCATGAATT+TGG - 6098:84874-84893 MS.gene88929:intron 35.0%
AACGAAACAAGATGAAGAAG+AGG + 6098:83481-83500 None:intergenic 35.0%
AAGTCCCACATTGGAAATAT+AGG + 6098:85152-85171 None:intergenic 35.0%
AAGTTAGTGACAATTTCGAC+AGG + 6098:85539-85558 None:intergenic 35.0%
AGAGAATTGATAGGCTCAAT+AGG - 6098:84836-84855 MS.gene88929:intron 35.0%
AGAGAATTGATAGGCTCATA+AGG - 6098:84770-84789 MS.gene88929:intron 35.0%
AGAGTCCTATATTTCCAATG+TGG - 6098:85144-85163 MS.gene88929:intron 35.0%
AGGATCTTTGGACAGATTTA+AGG + 6098:86786-86805 None:intergenic 35.0%
ATAGATGCCAAATATCATCG+GGG - 6098:85013-85032 MS.gene88929:intron 35.0%
ATATTTCCAATGTGGGACTT+GGG - 6098:85152-85171 MS.gene88929:intron 35.0%
CATAGATGCCAAATATCATC+AGG - 6098:84693-84712 MS.gene88929:intron 35.0%
CATAGATGCCAAATATCATC+GGG - 6098:84693-84712 MS.gene88929:intron 35.0%
CATATTTCCCCGATGATATT+TGG + 6098:85023-85042 None:intergenic 35.0%
CCTCTTTATAAGACTTAGAG+TGG + 6098:85470-85489 None:intergenic 35.0%
CCTGAGTTATTAGACCTATT+GGG - 6098:84168-84187 MS.gene88929:CDS 35.0%
CTATAGCTAACAGTCCATTA+GGG - 6098:83643-83662 MS.gene88929:CDS 35.0%
CTCTCATTTCATCGACAATA+GGG - 6098:84526-84545 MS.gene88929:intron 35.0%
CTTATCAGTTAGTTATGCAG+TGG + 6098:85060-85079 None:intergenic 35.0%
GAGAATTGATAGGCTCAATA+GGG - 6098:84837-84856 MS.gene88929:intron 35.0%
GAGTCCTATATTTCCAATGT+GGG - 6098:85145-85164 MS.gene88929:intron 35.0%
GGAGTCACTTCAAAGAAAAA+TGG - 6098:83665-83684 MS.gene88929:CDS 35.0%
GGATCTTTGGACAGATTTAA+GGG + 6098:86785-86804 None:intergenic 35.0%
GTAGTACCGTTGACAAATAT+TGG + 6098:85184-85203 None:intergenic 35.0%
GTATCAAGCTTAAGCTACAA+GGG - 6098:85768-85787 MS.gene88929:intron 35.0%
GTTAAATGTTAAGGGGCTAA+TGG - 6098:85832-85851 MS.gene88929:intron 35.0%
TATAGCTAACAGTCCATTAG+GGG - 6098:83644-83663 MS.gene88929:CDS 35.0%
TATATTTCCAATGTGGGACT+TGG - 6098:85151-85170 MS.gene88929:intron 35.0%
TATCAAGCTTAAGCTACAAG+GGG - 6098:85769-85788 MS.gene88929:intron 35.0%
TATTTGCCAAGTACTCCTTA+TGG - 6098:86264-86283 MS.gene88929:CDS 35.0%
TCCTGAGTTATTAGACCTAT+TGG - 6098:84167-84186 MS.gene88929:CDS 35.0%
TCGACAACACTACATAGAAT+TGG - 6098:85373-85392 MS.gene88929:intron 35.0%
TCTCTCATTTCATCGACAAT+AGG - 6098:84525-84544 MS.gene88929:intron 35.0%
TGGATACAAGCATTACCATA+AGG + 6098:86282-86301 None:intergenic 35.0%
TGGGAGATGCAAATATAACA+TGG - 6098:84603-84622 MS.gene88929:intron 35.0%
TGTATCAAGCTTAAGCTACA+AGG - 6098:85767-85786 MS.gene88929:intron 35.0%
TTCAAAAGCTTCAGGATCTT+TGG + 6098:86798-86817 None:intergenic 35.0%
TTCAAACCTGTTATATGGTG+GGG - 6098:85310-85329 MS.gene88929:intron 35.0%
TTCACTTTGTTGAACCTGTT+TGG - 6098:84196-84215 MS.gene88929:CDS 35.0%
TTGGTATAGGGATAAGGAAA+AGG + 6098:85985-86004 None:intergenic 35.0%
TTTCGACAGGATAACAGTAT+TGG + 6098:85526-85545 None:intergenic 35.0%
! AAATATTTCTGCAGTTCCAC+TGG + 6098:83981-84000 None:intergenic 35.0%
! CCACTCTAAGTCTTATAAAG+AGG - 6098:85467-85486 MS.gene88929:intron 35.0%
! CTTAGTGGTATTGGATGTAT+TGG - 6098:86431-86450 MS.gene88929:CDS 35.0%
! GTTCGATTTGTAGAATCGAA+AGG + 6098:86459-86478 None:intergenic 35.0%
! TCTTCATCTTGTTTCGTTAG+TGG - 6098:83483-83502 MS.gene88929:CDS 35.0%
! TGATCCACAATGTTTTGTAC+AGG + 6098:86911-86930 None:intergenic 35.0%
! TGTTATATGGTGGGGAAAAA+GGG - 6098:85318-85337 MS.gene88929:intron 35.0%
!!! TATTTTGGTATTCACCCTTG+TGG - 6098:85649-85668 MS.gene88929:intron 35.0%
AAAAAACCCAAGTCCCACAT+TGG + 6098:85161-85180 None:intergenic 40.0%
AAAGCAGTTTACAGAGGAGA+GGG + 6098:83523-83542 None:intergenic 40.0%
AATCAGAAAACTGCACTCTC+AGG + 6098:85735-85754 None:intergenic 40.0%
ACTTTGTTGAACCTGTTTGG+TGG - 6098:84199-84218 MS.gene88929:CDS 40.0%
AGAGATAGAACATGCTAACC+TGG + 6098:84245-84264 None:intergenic 40.0%
AGGAATACAGATGTCCACAA+GGG + 6098:85666-85685 None:intergenic 40.0%
AGGTCCTGTACAAAACATTG+TGG - 6098:86904-86923 MS.gene88929:CDS 40.0%
AGTCTTCCAATTTCTGACAG+GGG - 6098:86173-86192 MS.gene88929:intron 40.0%
AGTTCCCCAATGAGATATGA+TGG + 6098:83915-83934 None:intergenic 40.0%
ATAATATTAGCAGAGCTCGC+AGG + 6098:86318-86337 None:intergenic 40.0%
ATATTGTGGGATTGAAGCAC+TGG - 6098:86700-86719 MS.gene88929:CDS 40.0%
ATCAGAAAACTGCACTCTCA+GGG + 6098:85734-85753 None:intergenic 40.0%
ATCTCATCTGCAATGCTTCA+TGG - 6098:83565-83584 MS.gene88929:CDS 40.0%
ATTGATAGGCTCATAAGGTG+AGG - 6098:84775-84794 MS.gene88929:intron 40.0%
CAAAGTGAAAGACTCCCAAT+AGG + 6098:84185-84204 None:intergenic 40.0%
CAAGTTGTTGTGGAAAGGAT+CGG + 6098:86939-86958 None:intergenic 40.0%
CAGAATACGCCAGATATTGT+GGG - 6098:86687-86706 MS.gene88929:CDS 40.0%
CAGATGAGATGTTGTGTTCT+GGG + 6098:83555-83574 None:intergenic 40.0%
CATCTGTATTCCTGTGTGTA+AGG - 6098:85673-85692 MS.gene88929:intron 40.0%
CCCAATAGGTCTAATAACTC+AGG + 6098:84171-84190 None:intergenic 40.0%
CTACCCATCATATCTCATTG+GGG - 6098:83908-83927 MS.gene88929:intron 40.0%
CTTATCAGTTAGCTATGCAG+TGG + 6098:84741-84760 None:intergenic 40.0%
CTTGGTCCTATTTCGTATGA+CGG - 6098:83885-83904 MS.gene88929:intron 40.0%
GAAGCTATTCAGTTCACTTC+TGG - 6098:85442-85461 MS.gene88929:intron 40.0%
GAGTCTTCCAATTTCTGACA+GGG - 6098:86172-86191 MS.gene88929:intron 40.0%
GCTACCCATCATATCTCATT+GGG - 6098:83907-83926 MS.gene88929:intron 40.0%
GCTATAGCTAACAGTCCATT+AGG - 6098:83642-83661 MS.gene88929:CDS 40.0%
GTTAGGTTTCTTCACACAAG+CGG - 6098:86868-86887 MS.gene88929:CDS 40.0%
GTTCCCCAATGAGATATGAT+GGG + 6098:83914-83933 None:intergenic 40.0%
TCAGTTAGTTATGCAGTGGT+AGG + 6098:85056-85075 None:intergenic 40.0%
TGAGTCTTCCAATTTCTGAC+AGG - 6098:86171-86190 MS.gene88929:intron 40.0%
TGCTTCAATCCCACAATATC+TGG + 6098:86699-86718 None:intergenic 40.0%
TTCAGCTCTTCAAAAGCTTC+AGG + 6098:86806-86825 None:intergenic 40.0%
! CTGTTATATGGTGGGGAAAA+AGG - 6098:85317-85336 MS.gene88929:intron 40.0%
! CTTTCCACAACAACTTGCTT+GGG - 6098:86942-86961 MS.gene88929:CDS 40.0%
! CTTTTTCCCCACCATATAAC+AGG + 6098:85319-85338 None:intergenic 40.0%
! GGTTTGAACATCTGTTGGTT+AGG + 6098:85705-85724 None:intergenic 40.0%
! TTCAGCTTTTGGTATGGACA+AGG - 6098:83849-83868 MS.gene88929:intron 40.0%
! TTGAACATCTGTTGGTTAGG+AGG + 6098:85702-85721 None:intergenic 40.0%
!! ACACTTTTCAGGATCAGCAT+GGG + 6098:84426-84445 None:intergenic 40.0%
!! AGATGTTGTGTTCTGGGTTT+TGG + 6098:83549-83568 None:intergenic 40.0%
!! ATAGCTTTGACAGCAGTGAA+AGG + 6098:83627-83646 None:intergenic 40.0%
!! ATGTTGTGTTCTGGGTTTTG+GGG + 6098:83547-83566 None:intergenic 40.0%
!! CTGATCCTGAAAAGTGTCAT+GGG - 6098:84429-84448 MS.gene88929:intron 40.0%
!! GATGTTGTGTTCTGGGTTTT+GGG + 6098:83548-83567 None:intergenic 40.0%
!! GATTATGGCTTTGACATTGC+TGG - 6098:83942-83961 MS.gene88929:intron 40.0%
!! GCATTACCATAAGGAGTACT+TGG + 6098:86273-86292 None:intergenic 40.0%
AAACTGCACTCTCAGGGAAT+CGG + 6098:85728-85747 None:intergenic 45.0%
AAATGGACGCTTGGCAATGA+TGG - 6098:86841-86860 MS.gene88929:CDS 45.0%
AAGTACCACCCAAGCCATTA+TGG - 6098:84002-84021 MS.gene88929:intron 45.0%
AGCCTGAGCCTTGAATTTAG+AGG + 6098:83721-83740 None:intergenic 45.0%
AGTATCCCCCTGTCAGAAAT+TGG + 6098:86182-86201 None:intergenic 45.0%
ATCGGGGTTTGAACATCTGT+TGG + 6098:85710-85729 None:intergenic 45.0%
ATGTCAAAGCCATAATCCCC+AGG + 6098:83939-83958 None:intergenic 45.0%
CAAAGCAGTTTACAGAGGAG+AGG + 6098:83524-83543 None:intergenic 45.0%
CAGGAATACAGATGTCCACA+AGG + 6098:85667-85686 None:intergenic 45.0%
CCAAGCAAGTTGTTGTGGAA+AGG + 6098:86944-86963 None:intergenic 45.0%
CCACAATATCTGGCGTATTC+TGG + 6098:86689-86708 None:intergenic 45.0%
CCAGAATACGCCAGATATTG+TGG - 6098:86686-86705 MS.gene88929:CDS 45.0%
CCAGGCAGATATATTCCTAG+AGG + 6098:86728-86747 None:intergenic 45.0%
CCAGGGTAGTTTATATCACC+AGG + 6098:86746-86765 None:intergenic 45.0%
CCTGGTGATATAAACTACCC+TGG - 6098:86743-86762 MS.gene88929:CDS 45.0%
CTCCTCTAAATTCAAGGCTC+AGG - 6098:83716-83735 MS.gene88929:CDS 45.0%
GATCAAACAATGCTCCTCCA+GGG + 6098:86763-86782 None:intergenic 45.0%
GCAGATGAGATGTTGTGTTC+TGG + 6098:83556-83575 None:intergenic 45.0%
GGAGATGACCAAATTCATGC+CGG + 6098:84885-84904 None:intergenic 45.0%
GGCTACCCATCATATCTCAT+TGG - 6098:83906-83925 MS.gene88929:intron 45.0%
GGGGATACTCTAGATTACCT+TGG - 6098:86193-86212 MS.gene88929:CDS 45.0%
GGTGAACAGTACACATACCT+GGG + 6098:85505-85524 None:intergenic 45.0%
GGTGATATAAACTACCCTGG+AGG - 6098:86746-86765 MS.gene88929:CDS 45.0%
GTCTTCCAATTTCTGACAGG+GGG - 6098:86174-86193 MS.gene88929:intron 45.0%
GTTAGTTATGCAGTGGTAGG+CGG + 6098:85053-85072 None:intergenic 45.0%
TCAGTTAGCTATGCAGTGGT+AGG + 6098:84737-84756 None:intergenic 45.0%
TGAGATATTGCATGCTCGCT+GGG - 6098:84116-84135 MS.gene88929:intron 45.0%
TGGTGAACAGTACACATACC+TGG + 6098:85506-85525 None:intergenic 45.0%
TTGAGATATTGCATGCTCGC+TGG - 6098:84115-84134 MS.gene88929:intron 45.0%
! CATAACCATAATGGCTTGGG+TGG + 6098:84010-84029 None:intergenic 45.0%
! CATATGGGCTCAAAGAGTAC+TGG + 6098:86364-86383 None:intergenic 45.0%
! CCTCTAGGAATATATCTGCC+TGG - 6098:86725-86744 MS.gene88929:CDS 45.0%
! CCTTTCCACAACAACTTGCT+TGG - 6098:86941-86960 MS.gene88929:CDS 45.0%
! GAACTCCCATGACACTTTTC+AGG + 6098:84437-84456 None:intergenic 45.0%
! GCTTTTGGTATGGACAAGGT+CGG - 6098:83853-83872 MS.gene88929:intron 45.0%
!! CTTTGAAGTGACTCCCCTAA+TGG + 6098:83660-83679 None:intergenic 45.0%
!! GACACTTTTCAGGATCAGCA+TGG + 6098:84427-84446 None:intergenic 45.0%
!! GCTGATCCTGAAAAGTGTCA+TGG - 6098:84428-84447 MS.gene88929:intron 45.0%
!! GTTAAGGGGCTAATGGACTT+GGG - 6098:85839-85858 MS.gene88929:intron 45.0%
!! TGTTAAGGGGCTAATGGACT+TGG - 6098:85838-85857 MS.gene88929:intron 45.0%
!! TTGGCAATGATGGCTTGGTT+AGG - 6098:86851-86870 MS.gene88929:CDS 45.0%
AACTGCACTCTCAGGGAATC+GGG + 6098:85727-85746 None:intergenic 50.0%
ATCTCATTGGGGAACTGCCT+GGG - 6098:83919-83938 MS.gene88929:intron 50.0%
CAGTCATTTGCGTCTGCAGA+TGG - 6098:86612-86631 MS.gene88929:intron 50.0%
CTAGATTACCTTGGCATCCC+AGG - 6098:86202-86221 MS.gene88929:CDS 50.0%
CTTCACTTAGCTGGAAGCCA+GGG - 6098:86226-86245 MS.gene88929:CDS 50.0%
GAAATAGGACCAAGCCAACG+AGG + 6098:83879-83898 None:intergenic 50.0%
GAACAGTACACATACCTGGG+AGG + 6098:85502-85521 None:intergenic 50.0%
GAACATGCTAACCTGGAGCT+TGG + 6098:84238-84257 None:intergenic 50.0%
GGATCAAACAATGCTCCTCC+AGG + 6098:86764-86783 None:intergenic 50.0%
GGGTAGCCGTCATACGAAAT+AGG + 6098:83894-83913 None:intergenic 50.0%
GTGACCCAAGCAAGTTGTTG+TGG + 6098:86949-86968 None:intergenic 50.0%
GTTAGCTATGCAGTGGTAGG+CGG + 6098:84734-84753 None:intergenic 50.0%
TAGCAATCACAACCACTCCC+TGG + 6098:86246-86265 None:intergenic 50.0%
TATCTCATTGGGGAACTGCC+TGG - 6098:83918-83937 MS.gene88929:intron 50.0%
TCGCAGGACAAGGTGGATAA+TGG + 6098:86302-86321 None:intergenic 50.0%
TGGGCTATGCTTGCATCTGT+TGG - 6098:84135-84154 MS.gene88929:intron 50.0%
TGGGGCAAAGCAGTTTACAG+AGG + 6098:83529-83548 None:intergenic 50.0%
TTCCAGCTAAGTGAAGGCCT+GGG + 6098:86222-86241 None:intergenic 50.0%
! CGGTCACTACCTCTGTTTTC+TGG + 6098:83751-83770 None:intergenic 50.0%
! CGTTGGTTATTCCAAGCTCC+AGG - 6098:84224-84243 MS.gene88929:intron 50.0%
!! ATTGAAGCACTGGAGCCTCT+AGG - 6098:86710-86729 MS.gene88929:CDS 50.0%
!! CTACCTCTGTTTTCTGGCCT+TGG + 6098:83745-83764 None:intergenic 50.0%
ACTGCACTCTCAGGGAATCG+GGG + 6098:85726-85745 None:intergenic 55.0%
AGAGGTTGTTTGCTCCTCCC+AGG - 6098:85485-85504 MS.gene88929:intron 55.0%
ATCCCAGGCCTTCACTTAGC+TGG - 6098:86217-86236 MS.gene88929:CDS 55.0%
ATTCAAGGCTCAGGCTGCCA+AGG - 6098:83725-83744 MS.gene88929:CDS 55.0%
CCTGGCTTCCAGCTAAGTGA+AGG + 6098:86228-86247 None:intergenic 55.0%
CCTTCACTTAGCTGGAAGCC+AGG - 6098:86225-86244 MS.gene88929:CDS 55.0%
CTGCAGTTCCACTGGATCCT+TGG + 6098:83973-83992 None:intergenic 55.0%
CTGCCAAGGCCAGAAAACAG+AGG - 6098:83739-83758 MS.gene88929:intron 55.0%
CTTCCAGCTAAGTGAAGGCC+TGG + 6098:86223-86242 None:intergenic 55.0%
GACGCTTGGCAATGATGGCT+TGG - 6098:86846-86865 MS.gene88929:CDS 55.0%
GCTTCATGGCAAGAGCTTGC+TGG - 6098:83579-83598 MS.gene88929:CDS 55.0%
GTTCCACTGGATCCTTGGCA+AGG + 6098:83968-83987 None:intergenic 55.0%
TAACCAACGCGCCACCAAAC+AGG + 6098:84213-84232 None:intergenic 55.0%
TAGGAGGTCGCCTTACACAC+AGG + 6098:85686-85705 None:intergenic 55.0%
TCTCATTGGGGAACTGCCTG+GGG - 6098:83920-83939 MS.gene88929:intron 55.0%
TTAGCAGAGCTCGCAGGACA+AGG + 6098:86312-86331 None:intergenic 55.0%
! CTTCACACAAGCGGCACTGA+CGG - 6098:86877-86896 MS.gene88929:CDS 55.0%
!! TGACATTGCTGGCCTTGCCA+AGG - 6098:83953-83972 MS.gene88929:intron 55.0%
!! TTCACACAAGCGGCACTGAC+GGG - 6098:86878-86897 MS.gene88929:CDS 55.0%
AGTGAAGGCCTGGGATGCCA+AGG + 6098:86213-86232 None:intergenic 60.0%
ATGGACAAGGTCGGCCTCGT+TGG - 6098:83862-83881 MS.gene88929:intron 60.0%
CTTAGCTGGAAGCCAGGGAG+TGG - 6098:86231-86250 MS.gene88929:CDS 60.0%
GGGGAACTGCCTGGGGATTA+TGG - 6098:83927-83946 MS.gene88929:intron 60.0%
! TGGCCTTGCCAAGGATCCAG+TGG - 6098:83962-83981 MS.gene88929:intron 60.0%
!! CAAGCGGCACTGACGGGTAA+AGG - 6098:86884-86903 MS.gene88929:CDS 60.0%
!! GAACCTGTTTGGTGGCGCGT+TGG - 6098:84207-84226 MS.gene88929:CDS 60.0%
GCAGAGCTCGCAGGACAAGG+TGG + 6098:86309-86328 None:intergenic 65.0%
! CAAGGTCGGCCTCGTTGGCT+TGG - 6098:83867-83886 MS.gene88929:intron 65.0%


Chromosome Type Strat End Strand Name
6098 gene 83441 86991 83441 ID=MS.gene88929
6098 mRNA 83441 86991 83441 ID=MS.gene88929.t1;Parent=MS.gene88929
6098 exon 86672 86991 86672 ID=MS.gene88929.t1.exon1;Parent=MS.gene88929.t1
6098 CDS 86672 86991 86672 ID=cds.MS.gene88929.t1;Parent=MS.gene88929.t1
6098 exon 86429 86578 86429 ID=MS.gene88929.t1.exon2;Parent=MS.gene88929.t1
6098 CDS 86429 86578 86429 ID=cds.MS.gene88929.t1;Parent=MS.gene88929.t1
6098 exon 86187 86319 86187 ID=MS.gene88929.t1.exon3;Parent=MS.gene88929.t1
6098 CDS 86187 86319 86187 ID=cds.MS.gene88929.t1;Parent=MS.gene88929.t1
6098 exon 84147 84239 84147 ID=MS.gene88929.t1.exon4;Parent=MS.gene88929.t1
6098 CDS 84147 84239 84147 ID=cds.MS.gene88929.t1;Parent=MS.gene88929.t1
6098 exon 83441 83752 83441 ID=MS.gene88929.t1.exon5;Parent=MS.gene88929.t1
6098 CDS 83441 83752 83441 ID=cds.MS.gene88929.t1;Parent=MS.gene88929.t1
Gene Sequence

>MS.gene88929

ATGGTGTGGCTTCAACTTCAATCAGTGACGTGTCCTTCCTCTTCTTCATCTTGTTTCGTTAGTGGCTCTAGTCGCTGCTCCCTCTCCTCTGTAAACTGCTTTGCCCCAAAACCCAGAACACAACATCTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCTGTCAAAGCTATAGCTAACAGTCCATTAGGGGAGTCACTTCAAAGAAAAATGGAAGAGACTAAGCAACTTGCTGTACAAAACTCCTCTAAATTCAAGGCTCAGGCTGCCAAGGCCAGAAAACAGAGGTAGTGACCGATTTCAATTATTTTTATTCTCATTGCTGCTGCTGCTGCATCAATGAATTGTGCTCATTCCTATCATTCCTTAAACATTTTCAGCTTTTGGTATGGACAAGGTCGGCCTCGTTGGCTTGGTCCTATTTCGTATGACGGCTACCCATCATATCTCATTGGGGAACTGCCTGGGGATTATGGCTTTGACATTGCTGGCCTTGCCAAGGATCCAGTGGAACTGCAGAAATATTTCAAGTACCACCCAAGCCATTATGGTTATGTTATGTTATTATTATTGCTTCTTGGTTTTTTCATTTAAATAGTTAAATAGTTAACTTGTCCTTTCATTTAATTTACCATTAAGCTTTGAGATATTGCATGCTCGCTGGGCTATGCTTGCATCTGTTGGTGCTCTCATTCCTGAGTTATTAGACCTATTGGGAGTCTTTCACTTTGTTGAACCTGTTTGGTGGCGCGTTGGTTATTCCAAGCTCCAGGTTAGCATGTTCTATCTCTCTTATCTATTTGTTCACCTTTATCTTACACAAGTTTGTTCAATTAATAATATAATTACAGTCCATTTTCCACTAATTAGAAAGGGAAAATTGTGTCTTGTTTAACAATTTCAGAAAGCTACAATGCTCTATGACATTGCGAGTTTGCAAATGAGTATTCCCATGCTGATCCTGAAAAGTGTCATGGGAGTTCAAAAATTAATTGTAGTTTTTCACTTCTTGTGTCTTGTAGTAGTTTGTTTGATCATATTGTTGTTTTTATCTCTCATTTCATCGACAATAGGGTAGCATTCATTGTAAAAGTTTACCGGCATGAATAAGGAATTTTTTTAATGATTATGGGAGATGCAAATATAACATGGCAACCTTTCTTTCTCATTACAAGATGATCTCATGTTCTTAAGAAAAAGAAAATCTATACGCTAAGAACATAGATGCCAAATATCATCAGGGAAATATGTCTTTGTCCGCCTACCACTGCATAGCTAACTGATAAGAGTTTATAAAGAGAATTGATAGGCTCATAAGGTGAGGAGTGCCTCTCTTTATAACTAACTGACAAGAGTTTATAAAGAGAATTGATAGGCTCAATAGGGTAGCATTCATTGTAAAAGTTTACCGGCATGAATTTGGTCATCTCCCTTTTTTTAATGATTATGGGAGATACAAATATAACATGGCAACCTTTCTTTCTCATTACAAGATGATCTCATGTTCTTAAGAAAAAAGAAAATCTATACGCTAAGAACATAGATGCCAAATATCATCGGGGAAATATGTCTTTGTCCGCCTACCACTGCATAACTAACTGATAAGAGTTTATAAAGAGAATTGATAGGCTCATAAGGTGAGGAGTGCCTCTCTTTATAAACTCATATCAAGAGTCCTATATTTCCAATGTGGGACTTGGGTTTTTTCCAATATTTGTCAACGGTACTACGACCATTTGAAGAAATTAAGAAAATAGTAATCAGTTTTGATTATCAATTGTGTGCTTTGTTATGGGCAGCATTTTGAGCACAACATCTTAGCAAACATAATAAGTTTTCAAACCTGTTATATGGTGGGGAAAAAGGGTCAAAGTGTCTTTGCTAACGATATTCAAAAGTTCGACAACACTACATAGAATTGGCCACTCTTAAATAATATTACCGTGATATGCTTTCGTATGTTTCTAAGAAGCTATTCAGTTCACTTCTGGTCCCACTCTAAGTCTTATAAAGAGGTTGTTTGCTCCTCCCAGGTATGTGTACTGTTCACCAATACTGTTATCCTGTCGAAATTGTCACTAACTTGAGTGTCAAAGTGTATCTTATCGAAATTCTCACAAACTTGAGTATCAAAGTGTATCTTATCGAAATTCTCACTAACTTGAATTTAAAGTGTATTTTGGTATTCACCCTTGTGGACATCTGTATTCCTGTGTGTAAGGCGACCTCCTAACCAACAGATGTTCAAACCCCGATTCCCTGAGAGTGCAGTTTTCTGATTGACTTTGATGCTTGTATCAAGCTTAAGCTACAAGGGGAGTGCCACAATATTAGAATTATTTGGTTATTACTCTTATTGTTAAATGTTAAGGGGCTAATGGACTTGGGCTTATAGTACTAGCACTTAACCAAGTTATTAGATAAATAGGGATGCTAAAGGTTAGTGTTTTGTTTCACATTACATCTTTCATTATACTTTCAGCATACTGAACCGTCTTTCTCTCTTGTCCTTTTCCTTATCCCTATACCAATAATTCTTTGGCACTTTCTTTTCCATTATTGCACTTTATTAATTGAAACTAGTTGATAAATTTTTACCTGCATGAGAATAAATTTAACTCAGGCTGATGTTGTATACTTTTTTACTAAGCAAATAAACTGGTGAGTTGTAATAATGCAATTGACACTTATTACTTATGAGTCTTCCAATTTCTGACAGGGGGATACTCTAGATTACCTTGGCATCCCAGGCCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTAATGCTTGTATCCATTATCCACCTTGTCCTGCGAGCTCTGCTAATATTATTTATATCTTGTGACACTTGTCTTCCAGTACTCTTTGAGCCCATATGATGTTAGTGATGATGTGGCGTAGCACTACTAATTATTAGATTTTTAACTTAGTGGTATTGGATGTATTGGGACCTTTCGATTCTACAAATCGAACATTTCTCATGGCTTTTAATCCTTCGTCTCTTGAAATTAAAGAAGTTAATTTGCTTTCATAACTCATTTGTTTGGGCTAAAATAAAAAGTTTCAGTAGTTGGAGCTGCTTAACCATAAATTTGTTTCTTTTGGACAGTCATTTGCGTCTGCAGATGGATTAGCTACTGTTACTACTAATTTGGGATTCTTATCATAAAACAGGTTGGACCAGAATACGCCAGATATTGTGGGATTGAAGCACTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAACTACCCTGGAGGAGCATTGTTTGATCCCTTAAATCTGTCCAAAGATCCTGAAGCTTTTGAAGAGCTGAAAGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGTTTCTTCACACAAGCGGCACTGACGGGTAAAGGTCCTGTACAAAACATTGTGGATCATATCTCCGATCCTTTCCACAACAACTTGCTTGGGTCACTCAATTCAATGAAATTACACTAG

Protein sequence

>MS.gene88929.t1

MVWLQLQSVTCPSSSSSCFVSGSSRCSLSSVNCFAPKPRTQHLICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEETKQLAVQNSSKFKAQAAKARKQSFWYGQGRPRWLGPISYDGYPSYLIGELPGDYGFDIAGLAKDPVELQKYFNFEILHARWAMLASVGALIPELLDLLGVFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGSQGVVVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMMAWLGFFTQAALTGKGPVQNIVDHISDPFHNNLLGSLNSMKLH