Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38232.t1 | XP_003617925.1 | 99.2 | 516 | 3 | 1 | 1 | 516 | 1 | 515 | 1.80E-291 | 1011.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38232.t1 | P52416 | 92.9 | 518 | 25 | 3 | 1 | 516 | 1 | 508 | 8.5e-274 | 943.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38232.t1 | G7KEK9 | 99.2 | 516 | 3 | 1 | 1 | 516 | 1 | 515 | 1.3e-291 | 1011.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene38232 | 0.80088 | 1.17E-48 | -1.69E-46 |
| MS.gene049170 | MS.gene38232 | 0.840602 | 7.88E-58 | -1.69E-46 |
| MS.gene049171 | MS.gene38232 | 0.806663 | 7.37E-50 | -1.69E-46 |
| MS.gene049257 | MS.gene38232 | 0.818176 | 2.25E-52 | -1.69E-46 |
| MS.gene049356 | MS.gene38232 | 0.808249 | 3.40E-50 | -1.69E-46 |
| MS.gene049488 | MS.gene38232 | 0.804348 | 2.26E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene38232 | 0.832102 | 1.14E-55 | -1.69E-46 |
| MS.gene049633 | MS.gene38232 | 0.830197 | 3.36E-55 | -1.69E-46 |
| MS.gene049805 | MS.gene38232 | 0.807248 | 5.55E-50 | -1.69E-46 |
| MS.gene050060 | MS.gene38232 | 0.809373 | 1.95E-50 | -1.69E-46 |
| MS.gene050375 | MS.gene38232 | 0.809486 | 1.85E-50 | -1.69E-46 |
| MS.gene050399 | MS.gene38232 | 0.806227 | 9.11E-50 | -1.69E-46 |
| MS.gene050400 | MS.gene38232 | 0.829457 | 5.09E-55 | -1.69E-46 |
| MS.gene050426 | MS.gene38232 | -0.806327 | 8.68E-50 | -1.69E-46 |
| MS.gene050553 | MS.gene38232 | 0.810729 | 9.97E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene38232 | 0.825536 | 4.44E-54 | -1.69E-46 |
| MS.gene050670 | MS.gene38232 | 0.845723 | 3.40E-59 | -1.69E-46 |
| MS.gene050747 | MS.gene38232 | 0.801571 | 8.45E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene38232 | 0.809808 | 1.58E-50 | -1.69E-46 |
| MS.gene05080 | MS.gene38232 | 0.823419 | 1.40E-53 | -1.69E-46 |
| MS.gene05081 | MS.gene38232 | 0.90271 | 7.34E-79 | -1.69E-46 |
| MS.gene05105 | MS.gene38232 | 0.83691 | 7.10E-57 | -1.69E-46 |
| MS.gene051255 | MS.gene38232 | 0.801615 | 8.28E-49 | -1.69E-46 |
| MS.gene051360 | MS.gene38232 | 0.838913 | 2.17E-57 | -1.69E-46 |
| MS.gene051387 | MS.gene38232 | 0.819794 | 9.63E-53 | -1.69E-46 |
| MS.gene051455 | MS.gene38232 | 0.822412 | 2.40E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene38232 | 0.876897 | 9.69E-69 | -1.69E-46 |
| MS.gene051552 | MS.gene38232 | -0.82089 | 5.40E-53 | -1.69E-46 |
| MS.gene051734 | MS.gene38232 | 0.842214 | 2.96E-58 | -1.69E-46 |
| MS.gene051838 | MS.gene38232 | 0.890864 | 6.70E-74 | -1.69E-46 |
| MS.gene051858 | MS.gene38232 | 0.822172 | 2.73E-53 | -1.69E-46 |
| MS.gene051941 | MS.gene38232 | 0.828326 | 9.57E-55 | -1.69E-46 |
| MS.gene052011 | MS.gene38232 | -0.826944 | 2.05E-54 | -1.69E-46 |
| MS.gene052134 | MS.gene38232 | 0.824226 | 9.05E-54 | -1.69E-46 |
| MS.gene052135 | MS.gene38232 | 0.815131 | 1.08E-51 | -1.69E-46 |
| MS.gene052136 | MS.gene38232 | 0.816569 | 5.17E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene38232 | 0.82856 | 8.40E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene38232 | 0.804538 | 2.06E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene38232 | 0.827321 | 1.67E-54 | -1.69E-46 |
| MS.gene052346 | MS.gene38232 | 0.834863 | 2.34E-56 | -1.69E-46 |
| MS.gene052414 | MS.gene38232 | 0.857964 | 1.14E-62 | -1.69E-46 |
| MS.gene052421 | MS.gene38232 | 0.806863 | 6.69E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene38232 | 0.84966 | 2.80E-60 | -1.69E-46 |
| MS.gene052481 | MS.gene38232 | 0.838268 | 3.18E-57 | -1.69E-46 |
| MS.gene052484 | MS.gene38232 | 0.828937 | 6.81E-55 | -1.69E-46 |
| MS.gene052485 | MS.gene38232 | 0.82574 | 3.98E-54 | -1.69E-46 |
| MS.gene052501 | MS.gene38232 | 0.823825 | 1.12E-53 | -1.69E-46 |
| MS.gene052503 | MS.gene38232 | 0.806288 | 8.85E-50 | -1.69E-46 |
| MS.gene052505 | MS.gene38232 | 0.817647 | 2.96E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene38232 | 0.834594 | 2.74E-56 | -1.69E-46 |
| MS.gene052870 | MS.gene38232 | 0.87187 | 4.91E-67 | -1.69E-46 |
| MS.gene052872 | MS.gene38232 | 0.869958 | 2.10E-66 | -1.69E-46 |
| MS.gene052966 | MS.gene38232 | 0.820071 | 8.32E-53 | -1.69E-46 |
| MS.gene052982 | MS.gene38232 | 0.817689 | 2.90E-52 | -1.69E-46 |
| MS.gene052999 | MS.gene38232 | 0.835198 | 1.93E-56 | -1.69E-46 |
| MS.gene053169 | MS.gene38232 | 0.8241 | 9.69E-54 | -1.69E-46 |
| MS.gene053207 | MS.gene38232 | 0.830413 | 2.98E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene38232 | 0.808195 | 3.49E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene38232 | 0.821189 | 4.61E-53 | -1.69E-46 |
| MS.gene053479 | MS.gene38232 | 0.803798 | 2.93E-49 | -1.69E-46 |
| MS.gene053480 | MS.gene38232 | 0.81615 | 6.41E-52 | -1.69E-46 |
| MS.gene053758 | MS.gene38232 | 0.824447 | 8.03E-54 | -1.69E-46 |
| MS.gene053824 | MS.gene38232 | 0.856467 | 3.15E-62 | -1.69E-46 |
| MS.gene053912 | MS.gene38232 | 0.815147 | 1.07E-51 | -1.69E-46 |
| MS.gene053997 | MS.gene38232 | 0.80059 | 1.34E-48 | -1.69E-46 |
| MS.gene054107 | MS.gene38232 | 0.804888 | 1.74E-49 | -1.69E-46 |
| MS.gene054344 | MS.gene38232 | 0.823799 | 1.14E-53 | -1.69E-46 |
| MS.gene054556 | MS.gene38232 | 0.822425 | 2.38E-53 | -1.69E-46 |
| MS.gene054719 | MS.gene38232 | 0.825403 | 4.78E-54 | -1.69E-46 |
| MS.gene054884 | MS.gene38232 | -0.835174 | 1.96E-56 | -1.69E-46 |
| MS.gene054927 | MS.gene38232 | 0.819799 | 9.60E-53 | -1.69E-46 |
| MS.gene05494 | MS.gene38232 | 0.846791 | 1.74E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene38232 | 0.867162 | 1.68E-65 | -1.69E-46 |
| MS.gene055224 | MS.gene38232 | 0.809484 | 1.85E-50 | -1.69E-46 |
| MS.gene055370 | MS.gene38232 | 0.811948 | 5.42E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene38232 | 0.867786 | 1.06E-65 | -1.69E-46 |
| MS.gene05553 | MS.gene38232 | 0.826953 | 2.04E-54 | -1.69E-46 |
| MS.gene05556 | MS.gene38232 | 0.809549 | 1.79E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene38232 | 0.813334 | 2.70E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene38232 | 0.814351 | 1.61E-51 | -1.69E-46 |
| MS.gene055741 | MS.gene38232 | 0.861244 | 1.18E-63 | -1.69E-46 |
| MS.gene055744 | MS.gene38232 | 0.86264 | 4.39E-64 | -1.69E-46 |
| MS.gene055892 | MS.gene38232 | 0.807983 | 3.87E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene38232 | 0.801445 | 8.97E-49 | -1.69E-46 |
| MS.gene055909 | MS.gene38232 | 0.809978 | 1.45E-50 | -1.69E-46 |
| MS.gene055911 | MS.gene38232 | 0.812874 | 3.40E-51 | -1.69E-46 |
| MS.gene055941 | MS.gene38232 | 0.823079 | 1.68E-53 | -1.69E-46 |
| MS.gene056166 | MS.gene38232 | 0.832354 | 9.92E-56 | -1.69E-46 |
| MS.gene056511 | MS.gene38232 | 0.830326 | 3.13E-55 | -1.69E-46 |
| MS.gene056659 | MS.gene38232 | 0.804575 | 2.02E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene38232 | 0.828535 | 8.52E-55 | -1.69E-46 |
| MS.gene056877 | MS.gene38232 | 0.851912 | 6.51E-61 | -1.69E-46 |
| MS.gene056946 | MS.gene38232 | 0.811073 | 8.40E-51 | -1.69E-46 |
| MS.gene057019 | MS.gene38232 | 0.822159 | 2.75E-53 | -1.69E-46 |
| MS.gene057048 | MS.gene38232 | 0.811838 | 5.73E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene38232 | 0.853955 | 1.70E-61 | -1.69E-46 |
| MS.gene057124 | MS.gene38232 | 0.839885 | 1.21E-57 | -1.69E-46 |
| MS.gene057196 | MS.gene38232 | 0.842587 | 2.36E-58 | -1.69E-46 |
| MS.gene057289 | MS.gene38232 | 0.849827 | 2.52E-60 | -1.69E-46 |
| MS.gene057332 | MS.gene38232 | 0.828322 | 9.59E-55 | -1.69E-46 |
| MS.gene057658 | MS.gene38232 | 0.816366 | 5.74E-52 | -1.69E-46 |
| MS.gene057734 | MS.gene38232 | 0.803594 | 3.24E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene38232 | 0.85434 | 1.31E-61 | -1.69E-46 |
| MS.gene057823 | MS.gene38232 | 0.855495 | 6.07E-62 | -1.69E-46 |
| MS.gene057825 | MS.gene38232 | 0.80101 | 1.10E-48 | -1.69E-46 |
| MS.gene057856 | MS.gene38232 | 0.847174 | 1.37E-59 | -1.69E-46 |
| MS.gene057857 | MS.gene38232 | 0.806189 | 9.28E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene38232 | 0.829877 | 4.03E-55 | -1.69E-46 |
| MS.gene058120 | MS.gene38232 | 0.820524 | 6.56E-53 | -1.69E-46 |
| MS.gene058338 | MS.gene38232 | 0.832131 | 1.13E-55 | -1.69E-46 |
| MS.gene058376 | MS.gene38232 | 0.844126 | 9.17E-59 | -1.69E-46 |
| MS.gene05837 | MS.gene38232 | 0.824235 | 9.01E-54 | -1.69E-46 |
| MS.gene058418 | MS.gene38232 | -0.813337 | 2.69E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene38232 | 0.909278 | 6.80E-82 | -1.69E-46 |
| MS.gene058700 | MS.gene38232 | 0.846981 | 1.54E-59 | -1.69E-46 |
| MS.gene058838 | MS.gene38232 | 0.837579 | 4.78E-57 | -1.69E-46 |
| MS.gene058948 | MS.gene38232 | 0.812841 | 3.46E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene38232 | 0.848238 | 6.96E-60 | -1.69E-46 |
| MS.gene059129 | MS.gene38232 | 0.809063 | 2.28E-50 | -1.69E-46 |
| MS.gene059141 | MS.gene38232 | 0.802204 | 6.27E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene38232 | 0.805815 | 1.11E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene38232 | 0.82161 | 3.69E-53 | -1.69E-46 |
| MS.gene059455 | MS.gene38232 | 0.816447 | 5.51E-52 | -1.69E-46 |
| MS.gene059512 | MS.gene38232 | 0.831487 | 1.62E-55 | -1.69E-46 |
| MS.gene059674 | MS.gene38232 | 0.815126 | 1.08E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene38232 | 0.818422 | 1.98E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene38232 | 0.81247 | 4.17E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene38232 | 0.807372 | 5.22E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene38232 | 0.811145 | 8.10E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene38232 | 0.815862 | 7.44E-52 | -1.69E-46 |
| MS.gene060403 | MS.gene38232 | 0.807792 | 4.25E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene38232 | 0.802992 | 4.31E-49 | -1.69E-46 |
| MS.gene060469 | MS.gene38232 | 0.850068 | 2.16E-60 | -1.69E-46 |
| MS.gene060485 | MS.gene38232 | 0.812695 | 3.72E-51 | -1.69E-46 |
| MS.gene060717 | MS.gene38232 | 0.832613 | 8.56E-56 | -1.69E-46 |
| MS.gene060835 | MS.gene38232 | 0.837593 | 4.74E-57 | -1.69E-46 |
| MS.gene060837 | MS.gene38232 | 0.862296 | 5.60E-64 | -1.69E-46 |
| MS.gene06092 | MS.gene38232 | 0.813808 | 2.12E-51 | -1.69E-46 |
| MS.gene060986 | MS.gene38232 | 0.807884 | 4.06E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene38232 | 0.844587 | 6.89E-59 | -1.69E-46 |
| MS.gene061231 | MS.gene38232 | 0.854465 | 1.21E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38232.t1 | MTR_5g097010 | 99.225 | 516 | 3 | 1 | 1 | 516 | 1 | 515 | 0.0 | 1053 |
| MS.gene38232.t1 | MTR_3g082150 | 89.729 | 516 | 51 | 1 | 1 | 516 | 1 | 514 | 0.0 | 924 |
| MS.gene38232.t1 | MTR_4g131760 | 53.333 | 495 | 221 | 5 | 30 | 516 | 29 | 521 | 0.0 | 539 |
| MS.gene38232.t1 | MTR_7g111020 | 57.500 | 440 | 176 | 8 | 84 | 516 | 93 | 528 | 0.0 | 526 |
| MS.gene38232.t1 | MTR_3g112070 | 55.085 | 472 | 193 | 9 | 59 | 516 | 64 | 530 | 0.0 | 523 |
| MS.gene38232.t1 | MTR_3g116860 | 53.066 | 473 | 201 | 8 | 59 | 516 | 52 | 518 | 3.61e-168 | 486 |
| MS.gene38232.t1 | MTR_4g070430 | 52.283 | 438 | 201 | 5 | 84 | 516 | 94 | 528 | 1.15e-166 | 482 |
| MS.gene38232.t1 | MTR_7g111020 | 55.750 | 400 | 166 | 8 | 124 | 516 | 1 | 396 | 1.14e-159 | 459 |
| MS.gene38232.t1 | MTR_4g070430 | 52.208 | 385 | 176 | 5 | 84 | 463 | 94 | 475 | 3.35e-145 | 426 |
| MS.gene38232.t1 | MTR_7g104380 | 57.895 | 95 | 23 | 3 | 366 | 456 | 4 | 85 | 1.31e-24 | 102 |
| MS.gene38232.t1 | MTR_6g014000 | 78.182 | 55 | 12 | 0 | 420 | 474 | 266 | 320 | 1.95e-20 | 94.7 |
| MS.gene38232.t1 | MTR_3g056715 | 65.116 | 43 | 15 | 0 | 374 | 416 | 28 | 70 | 4.45e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38232.t1 | AT5G48300 | 85.769 | 520 | 70 | 3 | 1 | 516 | 1 | 520 | 0.0 | 893 |
| MS.gene38232.t1 | AT5G19220 | 52.031 | 517 | 233 | 8 | 10 | 516 | 11 | 522 | 0.0 | 538 |
| MS.gene38232.t1 | AT1G27680 | 57.175 | 439 | 179 | 5 | 84 | 516 | 83 | 518 | 0.0 | 531 |
| MS.gene38232.t1 | AT4G39210 | 47.692 | 520 | 239 | 9 | 16 | 516 | 16 | 521 | 4.14e-168 | 486 |
| MS.gene38232.t1 | AT4G39210 | 47.692 | 520 | 239 | 9 | 16 | 516 | 16 | 521 | 4.14e-168 | 486 |
| MS.gene38232.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 59 | 516 | 57 | 523 | 4.27e-166 | 481 |
| MS.gene38232.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 59 | 516 | 57 | 523 | 4.27e-166 | 481 |
| MS.gene38232.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 59 | 516 | 57 | 523 | 4.27e-166 | 481 |
| MS.gene38232.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 59 | 516 | 57 | 523 | 4.27e-166 | 481 |
| MS.gene38232.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 59 | 516 | 57 | 523 | 4.27e-166 | 481 |
| MS.gene38232.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 59 | 516 | 57 | 523 | 4.27e-166 | 481 |
| MS.gene38232.t1 | AT2G21590 | 50.529 | 473 | 213 | 7 | 59 | 516 | 57 | 523 | 4.27e-166 | 481 |
| MS.gene38232.t1 | AT1G05610 | 46.087 | 460 | 229 | 6 | 59 | 516 | 34 | 476 | 1.11e-141 | 417 |
| MS.gene38232.t1 | AT1G05610 | 46.320 | 462 | 231 | 6 | 59 | 516 | 34 | 482 | 1.35e-141 | 417 |
Find 99 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAGATTGTTACAGTTTC+TGG | 0.099528 | 5.3:+78402914 | MS.gene38232:CDS |
| TTCTCATCATCACAACTTTC+TGG | 0.135808 | 5.3:+78402890 | MS.gene38232:CDS |
| TTAGGTCGATACTACCATTT+TGG | 0.182482 | 5.3:+78404433 | MS.gene38232:intron |
| ATGCTGTGAGGCAATATTTA+TGG | 0.223531 | 5.3:+78404109 | MS.gene38232:CDS |
| ATTTAGTACAATGGCTTCTA+TGG | 0.248755 | 5.3:+78402781 | None:intergenic |
| TCTTATACCTGGAACCAATT+AGG | 0.277877 | 5.3:-78403682 | None:intergenic |
| GATATCACTGATAGTGTTAT+TGG | 0.282523 | 5.3:+78405209 | MS.gene38232:CDS |
| GCTTGCAACTGGTCTCCTTT+TGG | 0.300205 | 5.3:-78404339 | None:intergenic |
| TGGGGAAGGATGTGTGATTA+AGG | 0.308216 | 5.3:+78405229 | MS.gene38232:CDS |
| CTATTTAAGCAGTTGCTAAC+AGG | 0.334981 | 5.3:-78403514 | None:intergenic |
| TTCATCATCAAGACCCAAAA+TGG | 0.338471 | 5.3:-78404447 | None:intergenic |
| AGTCATTTGCACCAGGAAAT+TGG | 0.341546 | 5.3:-78404550 | None:intergenic |
| ATACCCATGCTAGCAATAAA+AGG | 0.346195 | 5.3:-78404485 | None:intergenic |
| ATATCACTGATAGTGTTATT+GGG | 0.347690 | 5.3:+78405210 | MS.gene38232:CDS |
| TTCCTGGTGCAAATGACTTT+GGG | 0.360622 | 5.3:+78404555 | MS.gene38232:CDS |
| TTGCTTCGCGACCAATTTCC+TGG | 0.362208 | 5.3:+78404539 | MS.gene38232:CDS |
| GAAAAGCGTGCAACTGCTTT+CGG | 0.366218 | 5.3:+78404267 | MS.gene38232:CDS |
| TATCGCGGTTGAGTGTAAAT+TGG | 0.366670 | 5.3:-78405158 | None:intergenic |
| TTTCCTGGTGCAAATGACTT+TGG | 0.393661 | 5.3:+78404554 | MS.gene38232:CDS |
| TGAGAATCCTAATTGGTTCC+AGG | 0.394813 | 5.3:+78403675 | MS.gene38232:CDS |
| CTTACTTATATGATGGCTAC+TGG | 0.396033 | 5.3:+78404943 | MS.gene38232:CDS |
| TATTGAAGACACTTTGTTGA+TGG | 0.396056 | 5.3:+78405430 | MS.gene38232:CDS |
| GTTGACAAGAATGCTAGAAT+TGG | 0.404186 | 5.3:+78405729 | MS.gene38232:CDS |
| AAAGTCCTGAGAATCCTAAT+TGG | 0.411364 | 5.3:+78403668 | MS.gene38232:CDS |
| GCAAAACCAGCTGTTCCTCT+TGG | 0.419432 | 5.3:+78403466 | MS.gene38232:CDS |
| GGCAGTGTTCCAATTGGTAT+TGG | 0.426491 | 5.3:+78405678 | MS.gene38232:CDS |
| TTGTTCATTCAGAGTGTACT+TGG | 0.433709 | 5.3:+78403388 | MS.gene38232:intron |
| TCCATTCTGTGGTCGGGCTG+CGG | 0.435088 | 5.3:+78405384 | MS.gene38232:CDS |
| AGTGTACTTGGCATTATACT+TGG | 0.438582 | 5.3:+78403400 | MS.gene38232:CDS |
| TGGAACCAATTAGGATTCTC+AGG | 0.441668 | 5.3:-78403673 | None:intergenic |
| ATTCCTGGTGCTACTTCCAT+TGG | 0.442617 | 5.3:+78404587 | MS.gene38232:CDS |
| AAAAGCCTGTACCTGACTTC+AGG | 0.442791 | 5.3:+78405018 | MS.gene38232:CDS |
| GAGTAACAATCACATGCTTC+CGG | 0.448356 | 5.3:-78402961 | None:intergenic |
| TTTGGGAGTGAAGTGATTCC+TGG | 0.451969 | 5.3:+78404572 | MS.gene38232:CDS |
| CATCTGTTTCCCTATGTGCT+TGG | 0.452131 | 5.3:-78404212 | None:intergenic |
| CTCTGCTAGCGTCAGGATCA+AGG | 0.461795 | 5.3:-78403021 | None:intergenic |
| CGTGCTTATGCAAGCAACCT+TGG | 0.464799 | 5.3:+78403601 | MS.gene38232:CDS |
| GTTACAGTTTCTGGTGGTGC+AGG | 0.467435 | 5.3:+78402923 | MS.gene38232:CDS |
| CTATTTATTTACCTGAAGTC+AGG | 0.470764 | 5.3:-78405029 | None:intergenic |
| GATGGGCGCGGATTATTATG+AGG | 0.472706 | 5.3:+78405448 | MS.gene38232:CDS |
| CGTAATCCATTCGATACAAA+TGG | 0.477237 | 5.3:-78404179 | None:intergenic |
| TCACCTTCATAGCTTGCAAC+TGG | 0.488306 | 5.3:-78404350 | None:intergenic |
| GTTTCTGGTGGTGCAGGAAG+AGG | 0.489728 | 5.3:+78402929 | MS.gene38232:CDS |
| TGCATTATAGAAAGCCTCAA+TGG | 0.493820 | 5.3:-78404979 | None:intergenic |
| GAGTTTCTGCCAATACCAAT+TGG | 0.493872 | 5.3:-78405687 | None:intergenic |
| AGACCAGTTGCAAGCTATGA+AGG | 0.497750 | 5.3:+78404347 | MS.gene38232:CDS |
| CGGTATCGTCACAATAATCA+AGG | 0.503615 | 5.3:+78406456 | MS.gene38232:CDS |
| GTTAAAGGCAGTGTTCCAAT+TGG | 0.505400 | 5.3:+78405672 | MS.gene38232:CDS |
| ATTTACCTGAAGTCAGGTAC+AGG | 0.505990 | 5.3:-78405023 | None:intergenic |
| CTCCCAAAGTCATTTGCACC+AGG | 0.511433 | 5.3:-78404557 | None:intergenic |
| ATGGCTTCTATGGCTACTAC+TGG | 0.512911 | 5.3:+78402791 | MS.gene38232:CDS |
| TTTGCTCTCTTCTTGGTGAG+TGG | 0.513424 | 5.3:-78403448 | None:intergenic |
| AAACTCACTCTGCTAGCGTC+AGG | 0.517611 | 5.3:-78403028 | None:intergenic |
| ATTGAAGACACTTTGTTGAT+GGG | 0.519372 | 5.3:+78405431 | MS.gene38232:CDS |
| AGAAATTTATCCAAGCACAT+AGG | 0.522176 | 5.3:+78404202 | MS.gene38232:CDS |
| TTAGCTCCAAGAGGAACAGC+TGG | 0.523224 | 5.3:-78403472 | None:intergenic |
| CGGTGACCATTTGTATCGAA+TGG | 0.523691 | 5.3:+78404173 | MS.gene38232:CDS |
| GTGCAAGCTTACTTATATGA+TGG | 0.525785 | 5.3:+78404936 | MS.gene38232:CDS |
| ACCGCAGCCCGACCACAGAA+TGG | 0.529090 | 5.3:-78405385 | None:intergenic |
| TGTGAATCAGAAACAGCCTT+AGG | 0.530492 | 5.3:-78402983 | None:intergenic |
| GTACTTGGCATTATACTTGG+AGG | 0.530626 | 5.3:+78403403 | MS.gene38232:CDS |
| GCATGTGATTGTTACTCCTA+AGG | 0.531636 | 5.3:+78402967 | MS.gene38232:CDS |
| GAAATTTATCCAAGCACATA+GGG | 0.548140 | 5.3:+78404203 | MS.gene38232:CDS |
| CAGGAAGAGGAAGATGCATC+CGG | 0.550332 | 5.3:+78402942 | MS.gene38232:CDS |
| CACTGTGGCTGCATTGCCAA+TGG | 0.554069 | 5.3:+78404242 | MS.gene38232:CDS |
| AGACACTTTGTTGATGGGCG+CGG | 0.554204 | 5.3:+78405436 | MS.gene38232:CDS |
| GCTTTCTATAATGCAAATCT+CGG | 0.554882 | 5.3:+78404987 | MS.gene38232:CDS |
| GAAGGTTATTTCATTAAAAG+CGG | 0.560913 | 5.3:+78406436 | MS.gene38232:CDS |
| ATTATACTTGGAGGTGGTGC+CGG | 0.562094 | 5.3:+78403412 | MS.gene38232:CDS |
| TTGGAGTACTTAATTCTGGC+CGG | 0.562380 | 5.3:+78404153 | MS.gene38232:CDS |
| TTACTTATATGATGGCTACT+GGG | 0.563247 | 5.3:+78404944 | MS.gene38232:CDS |
| ACTGATAGTGTTATTGGGGA+AGG | 0.567862 | 5.3:+78405215 | MS.gene38232:CDS |
| GCTTATGCAAGCAACCTTGG+TGG | 0.575280 | 5.3:+78403604 | MS.gene38232:CDS |
| CTTGGCATTATACTTGGAGG+TGG | 0.578848 | 5.3:+78403406 | MS.gene38232:CDS |
| CTGCGGTCTTGCATATCAGA+AGG | 0.580045 | 5.3:+78405401 | MS.gene38232:CDS |
| TTTCCAATGGAAGTAGCACC+AGG | 0.583076 | 5.3:-78404590 | None:intergenic |
| AACACATACTCTCTTTCCAA+TGG | 0.587424 | 5.3:-78404603 | None:intergenic |
| GAGTGGATATAGACGAGTAC+CGG | 0.599789 | 5.3:-78403431 | None:intergenic |
| CTGATGAAGATCGATGAAGA+GGG | 0.603378 | 5.3:+78404291 | MS.gene38232:CDS |
| TCTGATGAAGATCGATGAAG+AGG | 0.605701 | 5.3:+78404290 | MS.gene38232:CDS |
| GGAAGACATTGGTACCATTG+AGG | 0.607376 | 5.3:+78404965 | MS.gene38232:CDS |
| TCAGCATCAAGCATCTTCGA+TGG | 0.609318 | 5.3:-78405188 | None:intergenic |
| TATCACTGATAGTGTTATTG+GGG | 0.610791 | 5.3:+78405211 | MS.gene38232:CDS |
| CATAAGCACGAGAAAGATGT+CGG | 0.618768 | 5.3:-78403588 | None:intergenic |
| GATGGCTACTGGGAAGACAT+TGG | 0.627351 | 5.3:+78404954 | MS.gene38232:CDS |
| GCATCAAGCATCTTCGATGG+AGG | 0.628793 | 5.3:-78405185 | None:intergenic |
| AAGGATGCGTTAATTCCTAG+TGG | 0.633562 | 5.3:+78406475 | MS.gene38232:CDS |
| AAGATTGTTACAGTTTCTGG+TGG | 0.637778 | 5.3:+78402917 | MS.gene38232:CDS |
| CATTCGATACAAATGGTCAC+CGG | 0.640845 | 5.3:-78404172 | None:intergenic |
| TTCTAAATGACAGTTCCACT+AGG | 0.642519 | 5.3:-78406490 | None:intergenic |
| TCTTGATGATGAAAGAGCAA+AGG | 0.642796 | 5.3:+78404457 | MS.gene38232:CDS |
| TAGAATTGGAGAAAATGTGA+AGG | 0.647495 | 5.3:+78405743 | MS.gene38232:CDS |
| AGTCTATAGTTAGCTCCAAG+AGG | 0.652838 | 5.3:-78403481 | None:intergenic |
| GAAGCTGCAAGAGAAACTGA+AGG | 0.655332 | 5.3:+78406418 | MS.gene38232:CDS |
| TGATGAAGATCGATGAAGAG+GGG | 0.678706 | 5.3:+78404292 | MS.gene38232:CDS |
| TTCGATGGAGGCAAATATCG+CGG | 0.684638 | 5.3:-78405173 | None:intergenic |
| AGGGTACTGCAGATGCTGTG+AGG | 0.771116 | 5.3:+78404097 | MS.gene38232:intron |
| AACAGATGCTGATATCACTG+TGG | 0.779203 | 5.3:+78404227 | MS.gene38232:CDS |
| GATGAAGAAGAAGAACAACG+TGG | 0.833851 | 5.3:-78402827 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTGTGAATAATAA+AGG | - | chr5.3:78405955-78405974 | None:intergenic | 10.0% |
| !!! | TCATTTTATGTATTTTTTTT+GGG | + | chr5.3:78406076-78406095 | MS.gene38232:intron | 10.0% |
| !!! | TTCATTTTATGTATTTTTTT+TGG | + | chr5.3:78406075-78406094 | MS.gene38232:intron | 10.0% |
| !! | AATATTTATTCTCTATTCTT+AGG | + | chr5.3:78404415-78404434 | MS.gene38232:intron | 15.0% |
| !!! | ACTTTTAAAAATCTTACATA+TGG | + | chr5.3:78406358-78406377 | MS.gene38232:intron | 15.0% |
| !!! | ATCTATATATTTTCAATGTA+CGG | + | chr5.3:78406034-78406053 | MS.gene38232:intron | 15.0% |
| !!! | TTTAATTTCAAGAAACTTTT+CGG | + | chr5.3:78404637-78404656 | MS.gene38232:intron | 15.0% |
| !! | AAATGTTTGTTTCAATCTAA+AGG | - | chr5.3:78404750-78404769 | None:intergenic | 20.0% |
| !! | AATAATAATTGTAGTAGACA+TGG | + | chr5.3:78406207-78406226 | MS.gene38232:intron | 20.0% |
| !! | AGATGTCAAATATGATTAAA+TGG | + | chr5.3:78405306-78405325 | MS.gene38232:intron | 20.0% |
| !! | ATATTTGAAAAGATTTGATG+TGG | + | chr5.3:78404067-78404086 | MS.gene38232:intron | 20.0% |
| !! | ATGACAATATGATGATTATA+TGG | - | chr5.3:78405063-78405082 | None:intergenic | 20.0% |
| !! | ATTTGTTTAGGTATGAATTA+TGG | - | chr5.3:78404378-78404397 | None:intergenic | 20.0% |
| !!! | AGAAACTTCCTTTTTTTTTT+TGG | + | chr5.3:78405340-78405359 | MS.gene38232:intron | 20.0% |
| !!! | ATGGATTAGAAAGTAAAATA+GGG | - | chr5.3:78405804-78405823 | None:intergenic | 20.0% |
| !!! | TTTTTATGTTGCTTTTGAAT+CGG | + | chr5.3:78403738-78403757 | MS.gene38232:intron | 20.0% |
| ! | AAATCAGAAAATCAATGTTG+CGG | - | chr5.3:78405621-78405640 | None:intergenic | 25.0% |
| ! | CTAAGGATCCAAAAAAAAAA+AGG | - | chr5.3:78405351-78405370 | None:intergenic | 25.0% |
| ! | CTTGAAATTAAACAACTAGA+AGG | - | chr5.3:78404629-78404648 | None:intergenic | 25.0% |
| ! | GATTATTATGAGGTAAAATG+CGG | + | chr5.3:78405458-78405477 | MS.gene38232:intron | 25.0% |
| ! | TAGTTACATGTTTACATGAA+TGG | - | chr5.3:78406331-78406350 | None:intergenic | 25.0% |
| ! | TATTAAGCTTGACAAATTGT+TGG | + | chr5.3:78405830-78405849 | MS.gene38232:intron | 25.0% |
| ! | TGACTTCAGGTAAATAAATA+GGG | + | chr5.3:78405031-78405050 | MS.gene38232:intron | 25.0% |
| ! | TGTGAATAATAAAGGAAAGT+TGG | - | chr5.3:78405947-78405966 | None:intergenic | 25.0% |
| ! | TTCAAAAGCAACATAAAAAG+AGG | - | chr5.3:78403737-78403756 | None:intergenic | 25.0% |
| ! | TTTCTCTTGTAGATTGAATT+GGG | + | chr5.3:78403272-78403291 | MS.gene38232:intron | 25.0% |
| !! | AACAATTGCTCTTTTGATAT+GGG | - | chr5.3:78405712-78405731 | None:intergenic | 25.0% |
| !! | AACCAAAAATTATTTTCAGC+TGG | - | chr5.3:78403254-78403273 | None:intergenic | 25.0% |
| !! | AGTTTTTGTGAAAAATTCAC+AGG | + | chr5.3:78404914-78404933 | MS.gene38232:intron | 25.0% |
| !! | ATATCACTGATAGTGTTATT+GGG | + | chr5.3:78405210-78405229 | MS.gene38232:CDS | 25.0% |
| !! | GAAGGTTATTTCATTAAAAG+CGG | + | chr5.3:78406436-78406455 | MS.gene38232:CDS | 25.0% |
| !! | GTAACTTGTAAAGGTATAAA+GGG | + | chr5.3:78406101-78406120 | MS.gene38232:intron | 25.0% |
| !! | TACCAGCTGAAAATAATTTT+TGG | + | chr5.3:78403249-78403268 | MS.gene38232:intron | 25.0% |
| !! | TGTAACTTGTAAAGGTATAA+AGG | + | chr5.3:78406100-78406119 | MS.gene38232:intron | 25.0% |
| !! | TGTTTCAATCTAAAGGTTTT+TGG | - | chr5.3:78404743-78404762 | None:intergenic | 25.0% |
| !!! | AAAAGTTTTTTGGCTGTTAA+AGG | + | chr5.3:78405657-78405676 | MS.gene38232:CDS | 25.0% |
| !!! | AACTTTTGAAGCATTTGTTT+AGG | - | chr5.3:78404390-78404409 | None:intergenic | 25.0% |
| !!! | AGAAGCTGATAAAAGTTTTT+TGG | + | chr5.3:78405647-78405666 | MS.gene38232:CDS | 25.0% |
| !!! | GATGGATTAGAAAGTAAAAT+AGG | - | chr5.3:78405805-78405824 | None:intergenic | 25.0% |
| AAATGAATTTCACGTCTACT+AGG | - | chr5.3:78406062-78406081 | None:intergenic | 30.0% | |
| ACATTCATAGCTTAATTCTC+AGG | + | chr5.3:78404882-78404901 | MS.gene38232:intron | 30.0% | |
| AGAAATTTATCCAAGCACAT+AGG | + | chr5.3:78404202-78404221 | MS.gene38232:CDS | 30.0% | |
| ATTGAAGACACTTTGTTGAT+GGG | + | chr5.3:78405431-78405450 | MS.gene38232:CDS | 30.0% | |
| ATTTGCTTGTGTAAGTTACA+AGG | + | chr5.3:78405580-78405599 | MS.gene38232:intron | 30.0% | |
| CTAAAACTTCATCACGATAA+AGG | + | chr5.3:78404801-78404820 | MS.gene38232:intron | 30.0% | |
| CTATTTATTTACCTGAAGTC+AGG | - | chr5.3:78405032-78405051 | None:intergenic | 30.0% | |
| CTGACTTCAGGTAAATAAAT+AGG | + | chr5.3:78405030-78405049 | MS.gene38232:intron | 30.0% | |
| GAAATTTATCCAAGCACATA+GGG | + | chr5.3:78404203-78404222 | MS.gene38232:CDS | 30.0% | |
| GCTAATTGAGAACATAGTTA+AGG | - | chr5.3:78403711-78403730 | None:intergenic | 30.0% | |
| GCTTTCTATAATGCAAATCT+CGG | + | chr5.3:78404987-78405006 | MS.gene38232:CDS | 30.0% | |
| GGATTATAAAGTTCAACAGT+TGG | - | chr5.3:78404853-78404872 | None:intergenic | 30.0% | |
| GTTTCTCTTGTAGATTGAAT+TGG | + | chr5.3:78403271-78403290 | MS.gene38232:intron | 30.0% | |
| TAGAATTGGAGAAAATGTGA+AGG | + | chr5.3:78405743-78405762 | MS.gene38232:CDS | 30.0% | |
| TATAATGTGTCTCATGTTTC+TGG | + | chr5.3:78403821-78403840 | MS.gene38232:intron | 30.0% | |
| TATTGAAGACACTTTGTTGA+TGG | + | chr5.3:78405430-78405449 | MS.gene38232:CDS | 30.0% | |
| TCTCCTATATTTGTATTCTC+CGG | - | chr5.3:78403972-78403991 | None:intergenic | 30.0% | |
| TGAGACAACCAAAACTTAAA+AGG | + | chr5.3:78406153-78406172 | MS.gene38232:intron | 30.0% | |
| TTACTTATATGATGGCTACT+GGG | + | chr5.3:78404944-78404963 | MS.gene38232:CDS | 30.0% | |
| TTTGCTTGTGTAAGTTACAA+GGG | + | chr5.3:78405581-78405600 | MS.gene38232:intron | 30.0% | |
| ! | AAAATTTTCCATTCTGTGGT+CGG | + | chr5.3:78405377-78405396 | MS.gene38232:CDS | 30.0% |
| ! | AGCTATGAATGTTTTATAGC+AGG | - | chr5.3:78404874-78404893 | None:intergenic | 30.0% |
| ! | CAACAATTGCTCTTTTGATA+TGG | - | chr5.3:78405713-78405732 | None:intergenic | 30.0% |
| ! | GAATTTTCAGAAAAGCCAAA+AGG | + | chr5.3:78404324-78404343 | MS.gene38232:CDS | 30.0% |
| ! | GAGTTTATCTCTTTTGCTTT+TGG | + | chr5.3:78403045-78403064 | MS.gene38232:intron | 30.0% |
| ! | GATATCACTGATAGTGTTAT+TGG | + | chr5.3:78405209-78405228 | MS.gene38232:CDS | 30.0% |
| ! | GGAATGAAAGTGTATATAGT+TGG | - | chr5.3:78405783-78405802 | None:intergenic | 30.0% |
| ! | TATCACTGATAGTGTTATTG+GGG | + | chr5.3:78405211-78405230 | MS.gene38232:CDS | 30.0% |
| ! | TGGAAAATTTTGCAGTTCTA+AGG | - | chr5.3:78405368-78405387 | None:intergenic | 30.0% |
| ! | TTCATTTCTAGAGATGATAC+AGG | - | chr5.3:78404044-78404063 | None:intergenic | 30.0% |
| !! | CAAACATTTGTTTTTCCCAT+CGG | + | chr5.3:78404761-78404780 | MS.gene38232:intron | 30.0% |
| !! | TTTTGAAGAGCACAATGTTT+TGG | + | chr5.3:78404134-78404153 | MS.gene38232:CDS | 30.0% |
| !!! | TCTTTGGTCCTTTTAAGTTT+TGG | - | chr5.3:78406164-78406183 | None:intergenic | 30.0% |
| !!! | TGTTTTGGAGTACTTAATTC+TGG | + | chr5.3:78404149-78404168 | MS.gene38232:CDS | 30.0% |
| !!! | TTTTGGGTTGTAACTTGTAA+AGG | + | chr5.3:78406092-78406111 | MS.gene38232:intron | 30.0% |
| AAAGTCCTGAGAATCCTAAT+TGG | + | chr5.3:78403668-78403687 | MS.gene38232:CDS | 35.0% | |
| AACACATACTCTCTTTCCAA+TGG | - | chr5.3:78404606-78404625 | None:intergenic | 35.0% | |
| ACATAAAGGGACCAAAGATT+AGG | - | chr5.3:78405884-78405903 | None:intergenic | 35.0% | |
| AGAAAATCAATGTTGCGGTT+AGG | - | chr5.3:78405616-78405635 | None:intergenic | 35.0% | |
| AGCTTAATTCTCAGGATTTG+AGG | + | chr5.3:78404890-78404909 | MS.gene38232:intron | 35.0% | |
| AGTGTACTTGGCATTATACT+TGG | + | chr5.3:78403400-78403419 | MS.gene38232:CDS | 35.0% | |
| AGTTAAGGCAATCTTATACC+TGG | - | chr5.3:78403696-78403715 | None:intergenic | 35.0% | |
| ATACCCATGCTAGCAATAAA+AGG | - | chr5.3:78404488-78404507 | None:intergenic | 35.0% | |
| ATGAAGCACATATACGAACA+CGG | - | chr5.3:78403212-78403231 | None:intergenic | 35.0% | |
| ATGCTGTGAGGCAATATTTA+TGG | + | chr5.3:78404109-78404128 | MS.gene38232:CDS | 35.0% | |
| CAACAAAACATCGCAAAAAG+AGG | - | chr5.3:78406283-78406302 | None:intergenic | 35.0% | |
| CAACCGGAGAATACAAATAT+AGG | + | chr5.3:78403966-78403985 | MS.gene38232:intron | 35.0% | |
| CAGCTCTTAGCTCAAAAAAA+AGG | - | chr5.3:78403082-78403101 | None:intergenic | 35.0% | |
| CGTAATCCATTCGATACAAA+TGG | - | chr5.3:78404182-78404201 | None:intergenic | 35.0% | |
| CTATTTAAGCAGTTGCTAAC+AGG | - | chr5.3:78403517-78403536 | None:intergenic | 35.0% | |
| CTTACTTATATGATGGCTAC+TGG | + | chr5.3:78404943-78404962 | MS.gene38232:CDS | 35.0% | |
| GACAAGATTGTTACAGTTTC+TGG | + | chr5.3:78402914-78402933 | MS.gene38232:CDS | 35.0% | |
| GGTAAACGTGTATCGTTAAA+TGG | + | chr5.3:78403863-78403882 | MS.gene38232:intron | 35.0% | |
| GTCAAGCTTAATATGAGAGA+TGG | - | chr5.3:78405823-78405842 | None:intergenic | 35.0% | |
| GTGCAAGCTTACTTATATGA+TGG | + | chr5.3:78404936-78404955 | MS.gene38232:CDS | 35.0% | |
| GTTGACAAGAATGCTAGAAT+TGG | + | chr5.3:78405729-78405748 | MS.gene38232:CDS | 35.0% | |
| TATTTGTATTCTCCGGTTGT+AGG | - | chr5.3:78403965-78403984 | None:intergenic | 35.0% | |
| TCTTATACCTGGAACCAATT+AGG | - | chr5.3:78403685-78403704 | None:intergenic | 35.0% | |
| TGCATTATAGAAAGCCTCAA+TGG | - | chr5.3:78404982-78405001 | None:intergenic | 35.0% | |
| TTCATCATCAAGACCCAAAA+TGG | - | chr5.3:78404450-78404469 | None:intergenic | 35.0% | |
| TTCTCATCATCACAACTTTC+TGG | + | chr5.3:78402890-78402909 | MS.gene38232:CDS | 35.0% | |
| TTGTTCATTCAGAGTGTACT+TGG | + | chr5.3:78403388-78403407 | MS.gene38232:intron | 35.0% | |
| ! | AAATTTTCCATTCTGTGGTC+GGG | + | chr5.3:78405378-78405397 | MS.gene38232:CDS | 35.0% |
| ! | AACTTTTATCAGCTTCTGTC+TGG | - | chr5.3:78405644-78405663 | None:intergenic | 35.0% |
| ! | AAGATTGTTACAGTTTCTGG+TGG | + | chr5.3:78402917-78402936 | MS.gene38232:CDS | 35.0% |
| ! | AATGCCTTTTATTGCTAGCA+TGG | + | chr5.3:78404481-78404500 | MS.gene38232:CDS | 35.0% |
| ! | ATGCCTTTTATTGCTAGCAT+GGG | + | chr5.3:78404482-78404501 | MS.gene38232:CDS | 35.0% |
| ! | CTCTTTTTGCGATGTTTTGT+TGG | + | chr5.3:78406281-78406300 | MS.gene38232:intron | 35.0% |
| ! | CTGCAAAATTTTCCATTCTG+TGG | + | chr5.3:78405373-78405392 | MS.gene38232:CDS | 35.0% |
| ! | TAGGTCGATACTACCATTTT+GGG | + | chr5.3:78404434-78404453 | MS.gene38232:intron | 35.0% |
| ! | TTAGGTCGATACTACCATTT+TGG | + | chr5.3:78404433-78404452 | MS.gene38232:intron | 35.0% |
| !! | TCTTGATGATGAAAGAGCAA+AGG | + | chr5.3:78404457-78404476 | MS.gene38232:CDS | 35.0% |
| !! | TTTTGGTTGTCTCAAGACTT+TGG | - | chr5.3:78406147-78406166 | None:intergenic | 35.0% |
| !!! | CAAAAATGAGGGTTTTGTTG+AGG | + | chr5.3:78403630-78403649 | MS.gene38232:CDS | 35.0% |
| AACAGATGCTGATATCACTG+TGG | + | chr5.3:78404227-78404246 | MS.gene38232:CDS | 40.0% | |
| AAGGATGCGTTAATTCCTAG+TGG | + | chr5.3:78406475-78406494 | MS.gene38232:CDS | 40.0% | |
| ACATATACGAACACGGATAC+TGG | - | chr5.3:78403205-78403224 | None:intergenic | 40.0% | |
| AGATTTGATGTGGTCATTGC+AGG | + | chr5.3:78404077-78404096 | MS.gene38232:intron | 40.0% | |
| AGCTTTGCGTCGAAACATAA+AGG | - | chr5.3:78405898-78405917 | None:intergenic | 40.0% | |
| AGTCATTTGCACCAGGAAAT+TGG | - | chr5.3:78404553-78404572 | None:intergenic | 40.0% | |
| AGTCTATAGTTAGCTCCAAG+AGG | - | chr5.3:78403484-78403503 | None:intergenic | 40.0% | |
| ATTTACCTGAAGTCAGGTAC+AGG | - | chr5.3:78405026-78405045 | None:intergenic | 40.0% | |
| CATAAGCACGAGAAAGATGT+CGG | - | chr5.3:78403591-78403610 | None:intergenic | 40.0% | |
| CATCTTGGTCATCGTGTTTA+TGG | + | chr5.3:78405103-78405122 | MS.gene38232:intron | 40.0% | |
| CATTCGATACAAATGGTCAC+CGG | - | chr5.3:78404175-78404194 | None:intergenic | 40.0% | |
| CGGTATCGTCACAATAATCA+AGG | + | chr5.3:78406456-78406475 | MS.gene38232:CDS | 40.0% | |
| CTCTCTATGTCTCTGATCTT+TGG | - | chr5.3:78406180-78406199 | None:intergenic | 40.0% | |
| CTGATGAAGATCGATGAAGA+GGG | + | chr5.3:78404291-78404310 | MS.gene38232:CDS | 40.0% | |
| GACCAAAGATTAGGAACAGA+GGG | - | chr5.3:78405875-78405894 | None:intergenic | 40.0% | |
| GAGTAACAATCACATGCTTC+CGG | - | chr5.3:78402964-78402983 | None:intergenic | 40.0% | |
| GAGTTTCTGCCAATACCAAT+TGG | - | chr5.3:78405690-78405709 | None:intergenic | 40.0% | |
| GATGAAGAAGAAGAACAACG+TGG | - | chr5.3:78402830-78402849 | None:intergenic | 40.0% | |
| GATTTGATGTGGTCATTGCA+GGG | + | chr5.3:78404078-78404097 | MS.gene38232:intron | 40.0% | |
| GCATGTGATTGTTACTCCTA+AGG | + | chr5.3:78402967-78402986 | MS.gene38232:CDS | 40.0% | |
| GCTTTGCGTCGAAACATAAA+GGG | - | chr5.3:78405897-78405916 | None:intergenic | 40.0% | |
| GTACTTGGCATTATACTTGG+AGG | + | chr5.3:78403403-78403422 | MS.gene38232:CDS | 40.0% | |
| GTTAAAGGCAGTGTTCCAAT+TGG | + | chr5.3:78405672-78405691 | MS.gene38232:CDS | 40.0% | |
| TATCGCGGTTGAGTGTAAAT+TGG | - | chr5.3:78405161-78405180 | None:intergenic | 40.0% | |
| TCTGATGAAGATCGATGAAG+AGG | + | chr5.3:78404290-78404309 | MS.gene38232:CDS | 40.0% | |
| TGATGAAGATCGATGAAGAG+GGG | + | chr5.3:78404292-78404311 | MS.gene38232:CDS | 40.0% | |
| TGGAACCAATTAGGATTCTC+AGG | - | chr5.3:78403676-78403695 | None:intergenic | 40.0% | |
| TGTGAATCAGAAACAGCCTT+AGG | - | chr5.3:78402986-78403005 | None:intergenic | 40.0% | |
| TTCCTGGTGCAAATGACTTT+GGG | + | chr5.3:78404555-78404574 | MS.gene38232:CDS | 40.0% | |
| TTTCCTGGTGCAAATGACTT+TGG | + | chr5.3:78404554-78404573 | MS.gene38232:CDS | 40.0% | |
| ! | ACTGATAGTGTTATTGGGGA+AGG | + | chr5.3:78405215-78405234 | MS.gene38232:CDS | 40.0% |
| ! | CAATCCATTTTCCTGGTGTT+TGG | + | chr5.3:78404005-78404024 | MS.gene38232:intron | 40.0% |
| ! | CTTCATGCAATCCATTTTCC+TGG | + | chr5.3:78403998-78404017 | MS.gene38232:intron | 40.0% |
| ! | CTTGGTGGCTACAAAAATGA+GGG | + | chr5.3:78403619-78403638 | MS.gene38232:CDS | 40.0% |
| ! | GCGGTTTAAAACTACTTGCA+CGG | + | chr5.3:78405477-78405496 | MS.gene38232:intron | 40.0% |
| ! | GGTCGATGCTTATGATTTGT+TGG | + | chr5.3:78404822-78404841 | MS.gene38232:intron | 40.0% |
| ! | TCTAGTCTTCAACCTACAAC+CGG | + | chr5.3:78403950-78403969 | MS.gene38232:intron | 40.0% |
| ! | TGAGAATCCTAATTGGTTCC+AGG | + | chr5.3:78403675-78403694 | MS.gene38232:CDS | 40.0% |
| ! | TTGGAGTACTTAATTCTGGC+CGG | + | chr5.3:78404153-78404172 | MS.gene38232:CDS | 40.0% |
| !! | TGTACTCAATGAGAGCATCT+TGG | + | chr5.3:78405088-78405107 | MS.gene38232:intron | 40.0% |
| !! | TTTGTTTTTCCCATCGGAAC+TGG | + | chr5.3:78404767-78404786 | MS.gene38232:intron | 40.0% |
| AAAAAGTCAGCCAGTTCCGA+TGG | - | chr5.3:78404780-78404799 | None:intergenic | 45.0% | |
| AAAAGCCTGTACCTGACTTC+AGG | + | chr5.3:78405018-78405037 | MS.gene38232:CDS | 45.0% | |
| AAAAGTCAGCCAGTTCCGAT+GGG | - | chr5.3:78404779-78404798 | None:intergenic | 45.0% | |
| AGACCAGTTGCAAGCTATGA+AGG | + | chr5.3:78404347-78404366 | MS.gene38232:CDS | 45.0% | |
| ATCAACAGCTTCCAAACACC+AGG | - | chr5.3:78404019-78404038 | None:intergenic | 45.0% | |
| ATGGCTTCTATGGCTACTAC+TGG | + | chr5.3:78402791-78402810 | MS.gene38232:CDS | 45.0% | |
| ATTATACTTGGAGGTGGTGC+CGG | + | chr5.3:78403412-78403431 | MS.gene38232:CDS | 45.0% | |
| CATCTGTTTCCCTATGTGCT+TGG | - | chr5.3:78404215-78404234 | None:intergenic | 45.0% | |
| CGGTGACCATTTGTATCGAA+TGG | + | chr5.3:78404173-78404192 | MS.gene38232:CDS | 45.0% | |
| CTCCCTCTGTTCCTAATCTT+TGG | + | chr5.3:78405870-78405889 | MS.gene38232:intron | 45.0% | |
| CTTGGCATTATACTTGGAGG+TGG | + | chr5.3:78403406-78403425 | MS.gene38232:CDS | 45.0% | |
| GAACAGAGGGAGTAGATGAT+AGG | - | chr5.3:78405862-78405881 | None:intergenic | 45.0% | |
| GAAGCTGCAAGAGAAACTGA+AGG | + | chr5.3:78406418-78406437 | MS.gene38232:CDS | 45.0% | |
| GAGTGGATATAGACGAGTAC+CGG | - | chr5.3:78403434-78403453 | None:intergenic | 45.0% | |
| GCTTCCAAACACCAGGAAAA+TGG | - | chr5.3:78404012-78404031 | None:intergenic | 45.0% | |
| GGAAGACATTGGTACCATTG+AGG | + | chr5.3:78404965-78404984 | MS.gene38232:CDS | 45.0% | |
| GGACCAAAGATTAGGAACAG+AGG | - | chr5.3:78405876-78405895 | None:intergenic | 45.0% | |
| GGATCGAGATTCACTGTAGT+CGG | + | chr5.3:78403842-78403861 | MS.gene38232:intron | 45.0% | |
| GGCAGTGTTCCAATTGGTAT+TGG | + | chr5.3:78405678-78405697 | MS.gene38232:CDS | 45.0% | |
| TCAGCATCAAGCATCTTCGA+TGG | - | chr5.3:78405191-78405210 | None:intergenic | 45.0% | |
| TCATATGTTAGTGCCCGTGT+CGG | + | chr5.3:78403157-78403176 | MS.gene38232:intron | 45.0% | |
| TGGGGAAGGATGTGTGATTA+AGG | + | chr5.3:78405229-78405248 | MS.gene38232:CDS | 45.0% | |
| TGGTGTTTGGAAGCTGTTGA+TGG | + | chr5.3:78404018-78404037 | MS.gene38232:intron | 45.0% | |
| TTCGATGGAGGCAAATATCG+CGG | - | chr5.3:78405176-78405195 | None:intergenic | 45.0% | |
| TTTCCAATGGAAGTAGCACC+AGG | - | chr5.3:78404593-78404612 | None:intergenic | 45.0% | |
| TTTGCTCTCTTCTTGGTGAG+TGG | - | chr5.3:78403451-78403470 | None:intergenic | 45.0% | |
| TTTGGGAGTGAAGTGATTCC+TGG | + | chr5.3:78404572-78404591 | MS.gene38232:CDS | 45.0% | |
| ! | CCTTGGTGGCTACAAAAATG+AGG | + | chr5.3:78403618-78403637 | MS.gene38232:CDS | 45.0% |
| ! | GAAAAGCGTGCAACTGCTTT+CGG | + | chr5.3:78404267-78404286 | MS.gene38232:CDS | 45.0% |
| ! | GAAGTCAGGTACAGGCTTTT+TGG | - | chr5.3:78405018-78405037 | None:intergenic | 45.0% |
| ! | TCACCTTCATAGCTTGCAAC+TGG | - | chr5.3:78404353-78404372 | None:intergenic | 45.0% |
| !! | ATTCCTGGTGCTACTTCCAT+TGG | + | chr5.3:78404587-78404606 | MS.gene38232:CDS | 45.0% |
| !! | CCTCATTTTTGTAGCCACCA+AGG | - | chr5.3:78403621-78403640 | None:intergenic | 45.0% |
| !!! | AGCTGGTTTTGCTCTCTTCT+TGG | - | chr5.3:78403458-78403477 | None:intergenic | 45.0% |
| AAACTCACTCTGCTAGCGTC+AGG | - | chr5.3:78403031-78403050 | None:intergenic | 50.0% | |
| CAGGAAGAGGAAGATGCATC+CGG | + | chr5.3:78402942-78402961 | MS.gene38232:CDS | 50.0% | |
| CGTGCTTATGCAAGCAACCT+TGG | + | chr5.3:78403601-78403620 | MS.gene38232:CDS | 50.0% | |
| CTCCCAAAGTCATTTGCACC+AGG | - | chr5.3:78404560-78404579 | None:intergenic | 50.0% | |
| CTGCGGTCTTGCATATCAGA+AGG | + | chr5.3:78405401-78405420 | MS.gene38232:CDS | 50.0% | |
| GATGGCTACTGGGAAGACAT+TGG | + | chr5.3:78404954-78404973 | MS.gene38232:CDS | 50.0% | |
| GCAAAACCAGCTGTTCCTCT+TGG | + | chr5.3:78403466-78403485 | MS.gene38232:CDS | 50.0% | |
| GCATCAAGCATCTTCGATGG+AGG | - | chr5.3:78405188-78405207 | None:intergenic | 50.0% | |
| GCTTATGCAAGCAACCTTGG+TGG | + | chr5.3:78403604-78403623 | MS.gene38232:CDS | 50.0% | |
| TTAGCTCCAAGAGGAACAGC+TGG | - | chr5.3:78403475-78403494 | None:intergenic | 50.0% | |
| TTGCTTCGCGACCAATTTCC+TGG | + | chr5.3:78404539-78404558 | MS.gene38232:CDS | 50.0% | |
| ! | AGACACTTTGTTGATGGGCG+CGG | + | chr5.3:78405436-78405455 | MS.gene38232:CDS | 50.0% |
| ! | GATGGGCGCGGATTATTATG+AGG | + | chr5.3:78405448-78405467 | MS.gene38232:CDS | 50.0% |
| ! | GTTGCACGCTTTTCGTCCAT+TGG | - | chr5.3:78404261-78404280 | None:intergenic | 50.0% |
| !! | GCTTGCAACTGGTCTCCTTT+TGG | - | chr5.3:78404342-78404361 | None:intergenic | 50.0% |
| !! | GTTACAGTTTCTGGTGGTGC+AGG | + | chr5.3:78402923-78402942 | MS.gene38232:CDS | 50.0% |
| CACTGTGGCTGCATTGCCAA+TGG | + | chr5.3:78404242-78404261 | MS.gene38232:CDS | 55.0% | |
| CGAACACTGACACACCGACA+CGG | - | chr5.3:78403174-78403193 | None:intergenic | 55.0% | |
| CTCTGCTAGCGTCAGGATCA+AGG | - | chr5.3:78403024-78403043 | None:intergenic | 55.0% | |
| GAACACTGACACACCGACAC+GGG | - | chr5.3:78403173-78403192 | None:intergenic | 55.0% | |
| !! | AGGGTACTGCAGATGCTGTG+AGG | + | chr5.3:78404097-78404116 | MS.gene38232:intron | 55.0% |
| !! | GTTTCTGGTGGTGCAGGAAG+AGG | + | chr5.3:78402929-78402948 | MS.gene38232:CDS | 55.0% |
| TCCATTCTGTGGTCGGGCTG+CGG | + | chr5.3:78405384-78405403 | MS.gene38232:CDS | 60.0% | |
| ACCGCAGCCCGACCACAGAA+TGG | - | chr5.3:78405388-78405407 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 78402791 | 78406510 | 78402791 | ID=MS.gene38232 |
| chr5.3 | mRNA | 78402791 | 78406510 | 78402791 | ID=MS.gene38232.t1;Parent=MS.gene38232 |
| chr5.3 | exon | 78402791 | 78403042 | 78402791 | ID=MS.gene38232.t1.exon1;Parent=MS.gene38232.t1 |
| chr5.3 | CDS | 78402791 | 78403042 | 78402791 | ID=cds.MS.gene38232.t1;Parent=MS.gene38232.t1 |
| chr5.3 | exon | 78403400 | 78403696 | 78403400 | ID=MS.gene38232.t1.exon2;Parent=MS.gene38232.t1 |
| chr5.3 | CDS | 78403400 | 78403696 | 78403400 | ID=cds.MS.gene38232.t1;Parent=MS.gene38232.t1 |
| chr5.3 | exon | 78404099 | 78404368 | 78404099 | ID=MS.gene38232.t1.exon3;Parent=MS.gene38232.t1 |
| chr5.3 | CDS | 78404099 | 78404368 | 78404099 | ID=cds.MS.gene38232.t1;Parent=MS.gene38232.t1 |
| chr5.3 | exon | 78404437 | 78404616 | 78404437 | ID=MS.gene38232.t1.exon4;Parent=MS.gene38232.t1 |
| chr5.3 | CDS | 78404437 | 78404616 | 78404437 | ID=cds.MS.gene38232.t1;Parent=MS.gene38232.t1 |
| chr5.3 | exon | 78404936 | 78405039 | 78404936 | ID=MS.gene38232.t1.exon5;Parent=MS.gene38232.t1 |
| chr5.3 | CDS | 78404936 | 78405039 | 78404936 | ID=cds.MS.gene38232.t1;Parent=MS.gene38232.t1 |
| chr5.3 | exon | 78405139 | 78405250 | 78405139 | ID=MS.gene38232.t1.exon6;Parent=MS.gene38232.t1 |
| chr5.3 | CDS | 78405139 | 78405250 | 78405139 | ID=cds.MS.gene38232.t1;Parent=MS.gene38232.t1 |
| chr5.3 | exon | 78405371 | 78405469 | 78405371 | ID=MS.gene38232.t1.exon7;Parent=MS.gene38232.t1 |
| chr5.3 | CDS | 78405371 | 78405469 | 78405371 | ID=cds.MS.gene38232.t1;Parent=MS.gene38232.t1 |
| chr5.3 | exon | 78405645 | 78405764 | 78405645 | ID=MS.gene38232.t1.exon8;Parent=MS.gene38232.t1 |
| chr5.3 | CDS | 78405645 | 78405764 | 78405645 | ID=cds.MS.gene38232.t1;Parent=MS.gene38232.t1 |
| chr5.3 | exon | 78406394 | 78406510 | 78406394 | ID=MS.gene38232.t1.exon9;Parent=MS.gene38232.t1 |
| chr5.3 | CDS | 78406394 | 78406510 | 78406394 | ID=cds.MS.gene38232.t1;Parent=MS.gene38232.t1 |
| Gene Sequence |
| Protein sequence |
