AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67279


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67279.t1 MTR_1g041275 97.461 512 13 0 1 512 49 560 0.0 1030
MS.gene67279.t1 MTR_3g115210 38.953 344 178 9 167 504 88 405 1.24e-59 203
MS.gene67279.t1 MTR_3g115210 39.628 323 163 9 167 483 88 384 2.58e-55 190
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67279.t1 AT3G55760 61.122 517 184 6 1 508 68 576 0.0 617
MS.gene67279.t1 AT3G55760 61.122 517 184 6 1 508 68 576 0.0 617
MS.gene67279.t1 AT3G55760 61.122 517 184 6 1 508 68 576 0.0 617
MS.gene67279.t1 AT1G42430 37.673 361 204 9 156 509 54 400 1.46e-58 200
MS.gene67279.t1 AT1G42430 44.815 270 132 7 243 509 128 383 4.08e-58 198

Find 138 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCTGTGTTCCTGATTT+TGG 0.108621 1.3:-24282824 None:intergenic
GAAATGTTTGGCGTGAATTT+TGG 0.187840 1.3:+24283407 MS.gene67279:CDS
TATGAAAGATTCCCTCATTT+TGG 0.191007 1.3:+24285118 MS.gene67279:CDS
TAGAGTGGCAAGAGAAGTTT+TGG 0.220340 1.3:+24283320 MS.gene67279:CDS
CAAGAGTCCGGAACACAAAA+TGG 0.241861 1.3:+24282788 MS.gene67279:CDS
TTCTGATGAGTTTGGCTATA+AGG 0.253590 1.3:+24283348 MS.gene67279:CDS
GTTCCTTCAAATGATGTTAA+TGG 0.280836 1.3:+24282899 MS.gene67279:CDS
GACCTTTCCTTCTCGATAAC+AGG 0.289771 1.3:-24282968 None:intergenic
TGTGTTTCTTTCTCGTTCTA+TGG 0.293500 1.3:-24281343 None:intergenic
GTGATGAGTGGCAGGAAAAT+TGG 0.309768 1.3:+24283932 MS.gene67279:CDS
CCAGCATCGAGGGGTGTGTT+TGG 0.316320 1.3:-24284018 None:intergenic
ACCACTCCAGTCATCGTTAG+AGG 0.318460 1.3:+24283057 MS.gene67279:CDS
TGGGAGGCTTCTGATGAGTT+TGG 0.351158 1.3:+24283340 MS.gene67279:CDS
CAGATGGTGGATGGGAGAAA+TGG 0.354452 1.3:+24284900 MS.gene67279:CDS
CTTTCACTGCTTTGAAAACT+CGG 0.376409 1.3:+24285144 MS.gene67279:CDS
CGTCTGGTCAAGCTGAGAAA+TGG 0.376698 1.3:+24283971 MS.gene67279:CDS
GATCTGACAGAATCAGATTC+AGG 0.377933 1.3:+24282740 MS.gene67279:intron
AGATGGTGGATGGGAGAAAT+GGG 0.378142 1.3:+24284901 MS.gene67279:CDS
GGGAGAAATGGGGCGACAAA+TGG 0.387783 1.3:+24284912 MS.gene67279:CDS
TTCCTTCAAATGATGTTAAT+GGG 0.389094 1.3:+24282900 MS.gene67279:CDS
CCAAACACACCCCTCGATGC+TGG 0.389295 1.3:+24284018 MS.gene67279:CDS
CAGCATCGAGGGGTGTGTTT+GGG 0.394807 1.3:-24284017 None:intergenic
GGAAAACGGGCTACTGCATA+TGG 0.406999 1.3:+24283873 MS.gene67279:intron
GCATAAAATACACTGACAAA+TGG 0.414004 1.3:+24284864 MS.gene67279:CDS
ATTATCAATGGCAGGAAAAC+GGG 0.416043 1.3:+24283860 MS.gene67279:intron
AACCCATTAACATCATTTGA+AGG 0.417016 1.3:-24282902 None:intergenic
TGGAGAAAACTGCAGACAAA+TGG 0.423581 1.3:+24283893 MS.gene67279:CDS
GGTGAGCAACACAATGGTTC+TGG 0.424760 1.3:+24285025 MS.gene67279:CDS
ATGCTGGGCATGCTCATGTC+TGG 0.426296 1.3:+24284034 MS.gene67279:CDS
GGAGAAAACTGCAGACAAAT+GGG 0.427855 1.3:+24283894 MS.gene67279:CDS
TTCCTTCTCGATAACAGGAT+TGG 0.433266 1.3:-24282963 None:intergenic
TTTCAAGTGAGGAACGTGAT+AGG 0.442901 1.3:+24281457 MS.gene67279:CDS
ATGATTTACTGTCCACTTCG+AGG 0.442914 1.3:-24283177 None:intergenic
GCAGACAAATGGGGAAGAAA+TGG 0.443554 1.3:+24283904 MS.gene67279:CDS
GAACTTGGTTCTGAGAAATC+TGG 0.444964 1.3:+24283370 MS.gene67279:CDS
TTGGAGAGAATCCATGCGTC+AGG 0.446144 1.3:+24283426 MS.gene67279:CDS
GAGCAGTAGTGGTGAACATT+GGG 0.446442 1.3:+24285069 MS.gene67279:CDS
GGAGAAATGGGGCGACAAAT+GGG 0.449865 1.3:+24284913 MS.gene67279:CDS
TGCTGCTAGAGCGCTTCTTA+AGG 0.450496 1.3:+24281524 MS.gene67279:CDS
GACAGTAAATCATCACCTAT+TGG 0.451090 1.3:+24283187 MS.gene67279:CDS
CTCTTCCACGCCGTCGTCGT+TGG 0.451185 1.3:-24281391 None:intergenic
CTCCACCATCTCGTTCCATC+AGG 0.454183 1.3:-24283217 None:intergenic
AGCAATAGTGTTCGTTCTGA+TGG 0.458239 1.3:+24281555 MS.gene67279:CDS
GTCTGGTCAAGCTGAGAAAT+GGG 0.459856 1.3:+24283972 MS.gene67279:CDS
TCCACCATCTGTTGAACGCT+CGG 0.460074 1.3:-24284888 None:intergenic
CACACGAAATGCAAGATACT+TGG 0.460475 1.3:+24285095 MS.gene67279:CDS
CATAAAATACACTGACAAAT+GGG 0.461214 1.3:+24284865 MS.gene67279:CDS
ATAACAGGATTGGATAATGT+TGG 0.462117 1.3:-24282953 None:intergenic
CTGAGAAATGGGCACACAAA+TGG 0.464068 1.3:+24283983 MS.gene67279:CDS
GATTATCAATGGCAGGAAAA+CGG 0.464122 1.3:+24283859 MS.gene67279:intron
AGCGGTGAGTTTGTTGAAGT+GGG 0.464408 1.3:-24281367 None:intergenic
CACGCCGTCGTCGTTGGAAG+CGG 0.464942 1.3:-24281385 None:intergenic
GAGAGCGCTGGAACCGGACT+TGG 0.466122 1.3:+24285002 MS.gene67279:CDS
TTGAAAACTCGGTTCAACTC+AGG 0.466626 1.3:+24285155 MS.gene67279:CDS
CCATCAGGATTCACACCAAT+AGG 0.468455 1.3:-24283202 None:intergenic
AGCACGGAGAGCGCTGGAAC+CGG 0.469923 1.3:+24284996 MS.gene67279:CDS
TGAGTAAGTAAACTCTCAAA+TGG 0.477010 1.3:-24283010 None:intergenic
TGTGTTGCTCACCCCAAGTC+CGG 0.478776 1.3:-24285015 None:intergenic
TGGTAAAGGTGATGAGTGGC+AGG 0.479211 1.3:+24283924 MS.gene67279:CDS
CACCTACAAATGACACCATC+AGG 0.483819 1.3:-24283262 None:intergenic
CAAACACACCCCTCGATGCT+GGG 0.486060 1.3:+24284019 MS.gene67279:CDS
TGATAGGATTCAGAGATTGC+AGG 0.499013 1.3:+24281473 MS.gene67279:CDS
ACGAGATGGTGGAGAGAGAC+GGG 0.501456 1.3:+24283226 MS.gene67279:CDS
ATGAGCATGCCCAGCATCGA+GGG 0.501980 1.3:-24284028 None:intergenic
AAATGCTCATGGCATCAAGC+AGG 0.505562 1.3:+24284952 MS.gene67279:CDS
AAATCTGGACGTGATGCAAA+TGG 0.507451 1.3:+24283385 MS.gene67279:CDS
AGAGCGCTGGAACCGGACTT+GGG 0.507830 1.3:+24285003 MS.gene67279:CDS
TTTGAACACTACAATGCGTC+TGG 0.509320 1.3:+24283955 MS.gene67279:CDS
AACTACTTCTGCTGCATGGT+CGG 0.510338 1.3:-24283149 None:intergenic
AAGCGGTGAGTTTGTTGAAG+TGG 0.514928 1.3:-24281368 None:intergenic
GAGTTTGGCTATAAGGAACT+TGG 0.516769 1.3:+24283355 MS.gene67279:CDS
TTTGAACCTCTAACGATGAC+TGG 0.524222 1.3:-24283063 None:intergenic
ACACAGAAAGATGGTATCCC+AGG 0.524867 1.3:+24282836 MS.gene67279:CDS
AAGGTAAGCACGGAGAGCGC+TGG 0.526501 1.3:+24284990 MS.gene67279:CDS
AAGAGTCCGGAACACAAAAT+GGG 0.528614 1.3:+24282789 MS.gene67279:CDS
AGCGTTCAACAGATGGTGGA+TGG 0.528680 1.3:+24284891 MS.gene67279:CDS
TGTTGGATTAACTGAAGACT+TGG 0.531834 1.3:-24282936 None:intergenic
TGAAAACTCGGTTCAACTCA+GGG 0.532760 1.3:+24285156 MS.gene67279:CDS
AGAGTCTCCTTCTGTGGAAG+AGG 0.534266 1.3:+24283102 MS.gene67279:CDS
TCTGGATGGGTTCACAAGTA+CGG 0.540590 1.3:+24285043 MS.gene67279:CDS
CTGTTCCTTTGTCAGGTGGG+GGG 0.542638 1.3:+24284817 MS.gene67279:intron
AGAGCAGTAGTGGTGAACAT+TGG 0.544824 1.3:+24285068 MS.gene67279:CDS
GACCTGATGGTGTCATTTGT+AGG 0.552905 1.3:+24283260 MS.gene67279:CDS
TAGGGTTCTTGCCTTTCAGA+AGG 0.553381 1.3:-24285190 None:intergenic
CAGTGAAAGAAACCAAAATG+AGG 0.556652 1.3:-24285130 None:intergenic
AGCAACACAATGGTTCTGGA+TGG 0.562143 1.3:+24285029 MS.gene67279:CDS
TGATTTACTGTCCACTTCGA+GGG 0.562246 1.3:-24283176 None:intergenic
AAATCAGGAACACAGAAAGA+TGG 0.562399 1.3:+24282827 MS.gene67279:CDS
CTCGAACTACTTCTGCTGCA+TGG 0.563479 1.3:-24283153 None:intergenic
GAAACATATGACGGGTATGG+TGG 0.563721 1.3:+24284839 MS.gene67279:CDS
GTGATGCAAATGGAAATGTT+TGG 0.566936 1.3:+24283395 MS.gene67279:CDS
AACGAGATGGTGGAGAGAGA+CGG 0.567285 1.3:+24283225 MS.gene67279:CDS
AATTTCGATCTAAATGCTCA+TGG 0.570710 1.3:+24284941 MS.gene67279:CDS
TGGGCCGAGCGTTCAACAGA+TGG 0.571017 1.3:+24284884 MS.gene67279:CDS
AATAATGCTAACCTGACGCA+TGG 0.573117 1.3:-24283437 None:intergenic
ATGCTCATGTCTGGCACGAA+AGG 0.573497 1.3:+24284043 MS.gene67279:CDS
ATCCAATCCTGTTATCGAGA+AGG 0.574315 1.3:+24282961 MS.gene67279:CDS
GGGGAAACATATGACGGGTA+TGG 0.577836 1.3:+24284836 MS.gene67279:CDS
AAATGGGGAAGAAATGGTAA+AGG 0.588296 1.3:+24283910 MS.gene67279:CDS
CGCTTCCAACGACGACGGCG+TGG 0.589185 1.3:+24281386 MS.gene67279:CDS
AGAGTTTCAGAAGATTCTAG+AGG 0.589382 1.3:+24281434 MS.gene67279:CDS
AAGTACGGAAAGAGCAGTAG+TGG 0.590362 1.3:+24285058 MS.gene67279:CDS
GATTCTAGAGGTTTCAAGTG+AGG 0.591311 1.3:+24281446 MS.gene67279:CDS
CCTATTGGTGTGAATCCTGA+TGG 0.594533 1.3:+24283202 MS.gene67279:CDS
AGTGAAAGAAACCAAAATGA+GGG 0.598165 1.3:-24285129 None:intergenic
CAGGGAGAGACATGGTGGGA+AGG 0.601474 1.3:+24284971 MS.gene67279:CDS
GCGTTCAACAGATGGTGGAT+GGG 0.603310 1.3:+24284892 MS.gene67279:CDS
GAATGTAGAGTCTCCTTCTG+TGG 0.604329 1.3:+24283096 MS.gene67279:CDS
GGAATTGAGCAAAGACCTGA+TGG 0.605980 1.3:+24283247 MS.gene67279:CDS
AGACTCTACATTCGAAGAAG+CGG 0.610888 1.3:-24283086 None:intergenic
GAGCGCTGGAACCGGACTTG+GGG 0.611983 1.3:+24285004 MS.gene67279:CDS
GCAACACAATGGTTCTGGAT+GGG 0.612606 1.3:+24285030 MS.gene67279:CDS
GACTGGAGTGGTGGAAGTGT+AGG 0.618503 1.3:-24283046 None:intergenic
GTGCTGACAAAGCTTTAGAG+TGG 0.618802 1.3:+24283305 MS.gene67279:CDS
ATCCTGTTATCGAGAAGGAA+AGG 0.623492 1.3:+24282966 MS.gene67279:CDS
AATGCTCATGGCATCAAGCA+GGG 0.630523 1.3:+24284953 MS.gene67279:CDS
GCCGAGCGTTCAACAGATGG+TGG 0.631424 1.3:+24284887 MS.gene67279:CDS
TCAAGCAGGGAGAGACATGG+TGG 0.631506 1.3:+24284966 MS.gene67279:CDS
TCTAACGATGACTGGAGTGG+TGG 0.633376 1.3:-24283055 None:intergenic
AGTAGTTCGAGCCCTCGAAG+TGG 0.634124 1.3:+24283165 MS.gene67279:CDS
ACATGGTGGGAAGGTAAGCA+CGG 0.635347 1.3:+24284980 MS.gene67279:CDS
TGAGCATGCCCAGCATCGAG+GGG 0.641935 1.3:-24284027 None:intergenic
TTGGTCATGGACACCTCCGG+TGG 0.645266 1.3:+24282868 MS.gene67279:CDS
GAAGGAACATCACTATCCAC+CGG 0.646860 1.3:-24282884 None:intergenic
ATCCTGATGGAACGAGATGG+TGG 0.651460 1.3:+24283215 MS.gene67279:CDS
GCATCAAGCAGGGAGAGACA+TGG 0.651698 1.3:+24284963 MS.gene67279:CDS
GATGGTGGATGGGAGAAATG+GGG 0.658644 1.3:+24284902 MS.gene67279:CDS
CATGAGCATGCCCAGCATCG+AGG 0.662387 1.3:-24284029 None:intergenic
TGTAGGTGGACAGTGATCAG+AGG 0.666697 1.3:+24283277 MS.gene67279:CDS
GAGAAAACTGCAGACAAATG+GGG 0.668805 1.3:+24283895 MS.gene67279:CDS
GAAATGGTAAAGGTGATGAG+TGG 0.671438 1.3:+24283920 MS.gene67279:CDS
CAAGCAGGGAGAGACATGGT+GGG 0.687145 1.3:+24284967 MS.gene67279:CDS
ACTTGGGGTGAGCAACACAA+TGG 0.688078 1.3:+24285019 MS.gene67279:CDS
CTCACCGCTTCCAACGACGA+CGG 0.689866 1.3:+24281381 MS.gene67279:CDS
CTGATGGTGTCATTTGTAGG+TGG 0.699847 1.3:+24283263 MS.gene67279:CDS
TGAATCCTGATGGAACGAGA+TGG 0.700722 1.3:+24283212 MS.gene67279:CDS
ACCTCTAACGATGACTGGAG+TGG 0.704009 1.3:-24283058 None:intergenic
GGAACATCACTATCCACCGG+AGG 0.730141 1.3:-24282881 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTGATTTTTTTTTG+GGG + chr1.3:24282412-24282431 MS.gene67279:intron 10.0%
!!! CAAAATATTGATTTTTTTTT+GGG + chr1.3:24282411-24282430 MS.gene67279:intron 10.0%
!! ATAATGAAAATACTACATAA+TGG - chr1.3:24282510-24282529 None:intergenic 15.0%
!! ATATTATATCTTAAGCAATA+AGG + chr1.3:24284758-24284777 MS.gene67279:intron 15.0%
!!! AAATATTGATTTTTTTTTGG+GGG + chr1.3:24282413-24282432 MS.gene67279:intron 15.0%
!!! AATTTATAATCATCTGAAAT+CGG + chr1.3:24283667-24283686 MS.gene67279:intron 15.0%
!!! AATTTTTTGTTCTGATTTTT+TGG + chr1.3:24281645-24281664 MS.gene67279:intron 15.0%
!!! ATTAAACTCTAATGAAATTT+TGG - chr1.3:24281967-24281986 None:intergenic 15.0%
!!! GACTGAATATATATATTTTT+GGG - chr1.3:24284376-24284395 None:intergenic 15.0%
!!! GCAAAATATTGATTTTTTTT+TGG + chr1.3:24282410-24282429 MS.gene67279:intron 15.0%
!!! GTGTTTTTTGTTAATTTTTT+AGG + chr1.3:24284481-24284500 MS.gene67279:intron 15.0%
!!! TGAATTTTTTTAAAACAAAC+AGG + chr1.3:24284232-24284251 MS.gene67279:intron 15.0%
!!! TGACTGAATATATATATTTT+TGG - chr1.3:24284377-24284396 None:intergenic 15.0%
!!! TTCAGATGATTATAAATTTT+TGG - chr1.3:24283665-24283684 None:intergenic 15.0%
!!! TTTTTTTTCTTAAACTAACA+AGG + chr1.3:24282628-24282647 MS.gene67279:intron 15.0%
!! AATTTCATTAGAGTTTAATC+TGG + chr1.3:24281968-24281987 MS.gene67279:intron 20.0%
!! GGAATAAGTTAGATTAAAAA+GGG - chr1.3:24284637-24284656 None:intergenic 20.0%
!! TAATTCCATATAAAATCAAC+TGG + chr1.3:24281770-24281789 MS.gene67279:intron 20.0%
!! TATGATTATACCGAATTATT+TGG + chr1.3:24282093-24282112 MS.gene67279:intron 20.0%
!! TGGAATAAGTTAGATTAAAA+AGG - chr1.3:24284638-24284657 None:intergenic 20.0%
!! TTGGTTAATTGAATAATGTA+GGG + chr1.3:24281688-24281707 MS.gene67279:intron 20.0%
!! TTTGAGAAAACCAAATAATT+CGG - chr1.3:24282106-24282125 None:intergenic 20.0%
!! TTTGGTTAATTGAATAATGT+AGG + chr1.3:24281687-24281706 MS.gene67279:intron 20.0%
!!! AATATTGATTTTTTTTTGGG+GGG + chr1.3:24282414-24282433 MS.gene67279:intron 20.0%
!!! ATAATCCAGTTGATTTTATA+TGG - chr1.3:24281778-24281797 None:intergenic 20.0%
!!! CAACTGGATTATTTTATTTT+TGG + chr1.3:24281786-24281805 MS.gene67279:intron 20.0%
!!! TTCTTTTTTTTTGCAAACAA+AGG - chr1.3:24284176-24284195 None:intergenic 20.0%
!!! TTTTAATCTAACTTATTCCA+AGG + chr1.3:24284638-24284657 MS.gene67279:intron 20.0%
! ACAAAAAACACATTAAGCAA+TGG - chr1.3:24284472-24284491 None:intergenic 25.0%
! AGATGAAAAAAAATGTGGTT+GGG + chr1.3:24282315-24282334 MS.gene67279:intron 25.0%
! ATATTCTGTGTAGTAAAAAG+TGG + chr1.3:24282575-24282594 MS.gene67279:intron 25.0%
! CATAAAATACACTGACAAAT+GGG + chr1.3:24284865-24284884 MS.gene67279:CDS 25.0%
! CTTGTAGATGAAAAAAAATG+TGG + chr1.3:24282310-24282329 MS.gene67279:intron 25.0%
! GCAATATTTATCAAAACCTT+GGG - chr1.3:24284692-24284711 None:intergenic 25.0%
! TAGATGAAAAAAAATGTGGT+TGG + chr1.3:24282314-24282333 MS.gene67279:intron 25.0%
! TAGTGCAGAAGAAAATATAT+TGG - chr1.3:24284339-24284358 None:intergenic 25.0%
! TCATAGTATTTAGTCCTTAA+AGG + chr1.3:24284113-24284132 MS.gene67279:intron 25.0%
! TCTTGTATGATTTAAGTGAA+AGG + chr1.3:24284512-24284531 MS.gene67279:intron 25.0%
! TGCAATATTTATCAAAACCT+TGG - chr1.3:24284693-24284712 None:intergenic 25.0%
! TTCCTTCAAATGATGTTAAT+GGG + chr1.3:24282900-24282919 MS.gene67279:CDS 25.0%
!!! CACATTTTTTTTCATCTACA+AGG - chr1.3:24282312-24282331 None:intergenic 25.0%
!!! TTCTGATTTTTTGGCTTTTA+GGG + chr1.3:24281654-24281673 MS.gene67279:intron 25.0%
!!! TTTGGTTTTCTCAAATTAGT+AGG + chr1.3:24282111-24282130 MS.gene67279:intron 25.0%
!!! TTTTAGGGTTTTGGATATTT+TGG + chr1.3:24281669-24281688 MS.gene67279:intron 25.0%
AAAAAAAATGTGGTTGGGAT+GGG + chr1.3:24282320-24282339 MS.gene67279:intron 30.0%
AAATATTGCAAATAGCTTCC+TGG + chr1.3:24284703-24284722 MS.gene67279:intron 30.0%
AACCCATTAACATCATTTGA+AGG - chr1.3:24282905-24282924 None:intergenic 30.0%
AACTTCCCTCATAAATTAGT+CGG + chr1.3:24283740-24283759 MS.gene67279:intron 30.0%
AAGTACAAAAACCTTCTGAA+AGG + chr1.3:24285179-24285198 MS.gene67279:CDS 30.0%
AATTTCGATCTAAATGCTCA+TGG + chr1.3:24284941-24284960 MS.gene67279:CDS 30.0%
ACATAATGGCATGAGAAAAA+GGG - chr1.3:24282496-24282515 None:intergenic 30.0%
ACATGAATTCGTACATTAGA+GGG - chr1.3:24284409-24284428 None:intergenic 30.0%
ACATGATTGAAGTCAAGAAA+AGG + chr1.3:24282552-24282571 MS.gene67279:intron 30.0%
AGGATTAGAGATAGATTCTA+TGG + chr1.3:24281729-24281748 MS.gene67279:intron 30.0%
AGTGAAAGAAACCAAAATGA+GGG - chr1.3:24285132-24285151 None:intergenic 30.0%
ATAACAGGATTGGATAATGT+TGG - chr1.3:24282956-24282975 None:intergenic 30.0%
ATACTGAGCATGATTATCAA+TGG + chr1.3:24283848-24283867 MS.gene67279:intron 30.0%
ATTTATCAAAACCTTGGGTA+AGG - chr1.3:24284687-24284706 None:intergenic 30.0%
GAAAGATCACTAAACCTTTA+AGG - chr1.3:24284130-24284149 None:intergenic 30.0%
GCATAAAATACACTGACAAA+TGG + chr1.3:24284864-24284883 MS.gene67279:CDS 30.0%
GGACTAAATACTATGAAAAC+AGG - chr1.3:24284109-24284128 None:intergenic 30.0%
GGAGATACGTTACAAAAATA+TGG + chr1.3:24281576-24281595 MS.gene67279:CDS 30.0%
GTTCCTTCAAATGATGTTAA+TGG + chr1.3:24282899-24282918 MS.gene67279:CDS 30.0%
TACATAATGGCATGAGAAAA+AGG - chr1.3:24282497-24282516 None:intergenic 30.0%
TACATGAATTCGTACATTAG+AGG - chr1.3:24284410-24284429 None:intergenic 30.0%
TAGAAGAGCTTAAGAAACAT+TGG - chr1.3:24283709-24283728 None:intergenic 30.0%
TGAGTAAGTAAACTCTCAAA+TGG - chr1.3:24283013-24283032 None:intergenic 30.0%
TTCGGTATAATCATATGTGT+TGG - chr1.3:24282088-24282107 None:intergenic 30.0%
! ACATACCGACTAATTTATGA+GGG - chr1.3:24283748-24283767 None:intergenic 30.0%
! TACATACCGACTAATTTATG+AGG - chr1.3:24283749-24283768 None:intergenic 30.0%
! TATGAAAGATTCCCTCATTT+TGG + chr1.3:24285118-24285137 MS.gene67279:CDS 30.0%
! TGTAAAACTAGTTTACAGCT+GGG + chr1.3:24282465-24282484 MS.gene67279:intron 30.0%
!!! GTTCTGATTTTTTGGCTTTT+AGG + chr1.3:24281653-24281672 MS.gene67279:intron 30.0%
!!! TTTTTTGGCTTTTAGGGTTT+TGG + chr1.3:24281660-24281679 MS.gene67279:intron 30.0%
AAACCAGAGACCTTAGTTAA+GGG - chr1.3:24282286-24282305 None:intergenic 35.0%
AAATCAGGAACACAGAAAGA+TGG + chr1.3:24282827-24282846 MS.gene67279:CDS 35.0%
AAATGGGGAAGAAATGGTAA+AGG + chr1.3:24283910-24283929 MS.gene67279:CDS 35.0%
AGACCTTAGTTAAGGGATTT+GGG - chr1.3:24282279-24282298 None:intergenic 35.0%
AGAGTTTCAGAAGATTCTAG+AGG + chr1.3:24281434-24281453 MS.gene67279:CDS 35.0%
ATGTAATGCTCATGCTTATG+TGG - chr1.3:24282237-24282256 None:intergenic 35.0%
ATTATCAATGGCAGGAAAAC+GGG + chr1.3:24283860-24283879 MS.gene67279:intron 35.0%
ATTGAATAATGTAGGGACTG+TGG + chr1.3:24281695-24281714 MS.gene67279:intron 35.0%
CAGTGAAAGAAACCAAAATG+AGG - chr1.3:24285133-24285152 None:intergenic 35.0%
CATAAGCATGAGCATTACAT+TGG + chr1.3:24282237-24282256 MS.gene67279:intron 35.0%
GAAAAAAAATGTGGTTGGGA+TGG + chr1.3:24282319-24282338 MS.gene67279:intron 35.0%
GACAGTAAATCATCACCTAT+TGG + chr1.3:24283187-24283206 MS.gene67279:CDS 35.0%
GATTAAAAAGGGAAGCAAAG+TGG - chr1.3:24284626-24284645 None:intergenic 35.0%
GATTATCAATGGCAGGAAAA+CGG + chr1.3:24283859-24283878 MS.gene67279:intron 35.0%
GTGATGCAAATGGAAATGTT+TGG + chr1.3:24283395-24283414 MS.gene67279:CDS 35.0%
TAAGATTCATGAATGCACCA+AGG - chr1.3:24283793-24283812 None:intergenic 35.0%
TACTTAAGGTCGAATCAATC+AGG + chr1.3:24283552-24283571 MS.gene67279:intron 35.0%
TATGAAGCATGTGAACTTCT+CGG + chr1.3:24282020-24282039 MS.gene67279:intron 35.0%
TCTGTGTAGTAAAAAGTGGA+AGG + chr1.3:24282579-24282598 MS.gene67279:intron 35.0%
TGTCTGTATCTTTGCATCAT+AGG + chr1.3:24282175-24282194 MS.gene67279:intron 35.0%
TGTGTTTCTTTCTCGTTCTA+TGG - chr1.3:24281346-24281365 None:intergenic 35.0%
TGTTGGATTAACTGAAGACT+TGG - chr1.3:24282939-24282958 None:intergenic 35.0%
TTCTGATGAGTTTGGCTATA+AGG + chr1.3:24283348-24283367 MS.gene67279:CDS 35.0%
TTGTACACGAAAGATGTTAG+TGG + chr1.3:24282686-24282705 MS.gene67279:intron 35.0%
! ACTCTTTTTGTGCCAAAATC+AGG + chr1.3:24282812-24282831 MS.gene67279:CDS 35.0%
! GAAATGTTTGGCGTGAATTT+TGG + chr1.3:24283407-24283426 MS.gene67279:CDS 35.0%
! GTGTAAAACTAGTTTACAGC+TGG + chr1.3:24282464-24282483 MS.gene67279:intron 35.0%
! TCTTTCTGTGTTCCTGATTT+TGG - chr1.3:24282827-24282846 None:intergenic 35.0%
!! AGTATTTTTGTGCAAGAGTC+CGG + chr1.3:24282776-24282795 MS.gene67279:CDS 35.0%
!! CTTTCACTGCTTTGAAAACT+CGG + chr1.3:24285144-24285163 MS.gene67279:CDS 35.0%
AAAAAGGGAAGCAAAGTGGA+GGG - chr1.3:24284622-24284641 None:intergenic 40.0%
AAATCTGGACGTGATGCAAA+TGG + chr1.3:24283385-24283404 MS.gene67279:CDS 40.0%
AAGAGTCCGGAACACAAAAT+GGG + chr1.3:24282789-24282808 MS.gene67279:CDS 40.0%
AATAATGCTAACCTGACGCA+TGG - chr1.3:24283440-24283459 None:intergenic 40.0%
AATCCCTTAACTAAGGTCTC+TGG + chr1.3:24282280-24282299 MS.gene67279:intron 40.0%
ACAGGATATAAGCATGTCTC+AGG + chr1.3:24284250-24284269 MS.gene67279:intron 40.0%
AGACTCTACATTCGAAGAAG+CGG - chr1.3:24283089-24283108 None:intergenic 40.0%
AGCAATAGTGTTCGTTCTGA+TGG + chr1.3:24281555-24281574 MS.gene67279:CDS 40.0%
ATAATGTAGGGACTGTGGTT+TGG + chr1.3:24281700-24281719 MS.gene67279:intron 40.0%
ATCCAATCCTGTTATCGAGA+AGG + chr1.3:24282961-24282980 MS.gene67279:CDS 40.0%
ATCCTGTTATCGAGAAGGAA+AGG + chr1.3:24282966-24282985 MS.gene67279:CDS 40.0%
ATGACCAAAAATCAGGACCT+GGG - chr1.3:24282856-24282875 None:intergenic 40.0%
ATGATTTACTGTCCACTTCG+AGG - chr1.3:24283180-24283199 None:intergenic 40.0%
CAAACCAGAGACCTTAGTTA+AGG - chr1.3:24282287-24282306 None:intergenic 40.0%
CACACGAAATGCAAGATACT+TGG + chr1.3:24285095-24285114 MS.gene67279:CDS 40.0%
CAGGATATAAGCATGTCTCA+GGG + chr1.3:24284251-24284270 MS.gene67279:intron 40.0%
CATGCTTATGTGGCAATGTA+TGG - chr1.3:24282227-24282246 None:intergenic 40.0%
CTTATGAACCTACAGAGTGT+TGG + chr1.3:24283809-24283828 MS.gene67279:intron 40.0%
GAAATGGTAAAGGTGATGAG+TGG + chr1.3:24283920-24283939 MS.gene67279:CDS 40.0%
GAGAAAACTGCAGACAAATG+GGG + chr1.3:24283895-24283914 MS.gene67279:CDS 40.0%
GAGACCTTAGTTAAGGGATT+TGG - chr1.3:24282280-24282299 None:intergenic 40.0%
GAGTTTGGCTATAAGGAACT+TGG + chr1.3:24283355-24283374 MS.gene67279:CDS 40.0%
GATCTGACAGAATCAGATTC+AGG + chr1.3:24282740-24282759 MS.gene67279:intron 40.0%
GGAGAAAACTGCAGACAAAT+GGG + chr1.3:24283894-24283913 MS.gene67279:CDS 40.0%
TAAAAAGGGAAGCAAAGTGG+AGG - chr1.3:24284623-24284642 None:intergenic 40.0%
TCACCTGAAAACCAAGTGAT+TGG + chr1.3:24283508-24283527 MS.gene67279:intron 40.0%
TGAAAACTCGGTTCAACTCA+GGG + chr1.3:24285156-24285175 MS.gene67279:CDS 40.0%
TGAGCATGATTATCAATGGC+AGG + chr1.3:24283852-24283871 MS.gene67279:intron 40.0%
TGATAGGATTCAGAGATTGC+AGG + chr1.3:24281473-24281492 MS.gene67279:CDS 40.0%
TGATTTACTGTCCACTTCGA+GGG - chr1.3:24283179-24283198 None:intergenic 40.0%
TGCATACAAAGAGCAGAAGT+TGG - chr1.3:24284540-24284559 None:intergenic 40.0%
TGGAGAAAACTGCAGACAAA+TGG + chr1.3:24283893-24283912 MS.gene67279:CDS 40.0%
TTCCTTCTCGATAACAGGAT+TGG - chr1.3:24282966-24282985 None:intergenic 40.0%
TTGAAAACTCGGTTCAACTC+AGG + chr1.3:24285155-24285174 MS.gene67279:CDS 40.0%
TTGTGATCTGTTCCTTTGTC+AGG + chr1.3:24284810-24284829 MS.gene67279:intron 40.0%
TTTCAGCCAGGGAACAAATT+CGG - chr1.3:24283582-24283601 None:intergenic 40.0%
TTTGAACACTACAATGCGTC+TGG + chr1.3:24283955-24283974 MS.gene67279:CDS 40.0%
TTTGAACCTCTAACGATGAC+TGG - chr1.3:24283066-24283085 None:intergenic 40.0%
! AAGAGTCCCATTTTGTGTTC+CGG - chr1.3:24282798-24282817 None:intergenic 40.0%
! AGAGTGGCAAGAGAAGTTTT+GGG + chr1.3:24283321-24283340 MS.gene67279:CDS 40.0%
! CAAAACCTTGGGTAAGGTTT+TGG - chr1.3:24284681-24284700 None:intergenic 40.0%
! GATTCTAGAGGTTTCAAGTG+AGG + chr1.3:24281446-24281465 MS.gene67279:CDS 40.0%
! TAGAGTGGCAAGAGAAGTTT+TGG + chr1.3:24283320-24283339 MS.gene67279:CDS 40.0%
! TGAAGTATCCAACACTCTGT+AGG - chr1.3:24283820-24283839 None:intergenic 40.0%
! TTCTTTTCCTCTTCCACAGA+AGG - chr1.3:24283112-24283131 None:intergenic 40.0%
! TTTCAAGTGAGGAACGTGAT+AGG + chr1.3:24281457-24281476 MS.gene67279:CDS 40.0%
!! AGACCAATCACTTGGTTTTC+AGG - chr1.3:24283514-24283533 None:intergenic 40.0%
!! ATCGCAAATGAGCATTGAGT+GGG - chr1.3:24284213-24284232 None:intergenic 40.0%
!! GAACTTGGTTCTGAGAAATC+TGG + chr1.3:24283370-24283389 MS.gene67279:CDS 40.0%
!! TGGTCAATGGACTGTACTTA+AGG + chr1.3:24283538-24283557 MS.gene67279:intron 40.0%
AAAAATGTGGTTGGGATGGG+AGG + chr1.3:24282323-24282342 MS.gene67279:intron 45.0%
AAAATGTGGTTGGGATGGGA+GGG + chr1.3:24282324-24282343 MS.gene67279:intron 45.0%
AAATGCTCATGGCATCAAGC+AGG + chr1.3:24284952-24284971 MS.gene67279:CDS 45.0%
AACTACTTCTGCTGCATGGT+CGG - chr1.3:24283152-24283171 None:intergenic 45.0%
AAGTACGGAAAGAGCAGTAG+TGG + chr1.3:24285058-24285077 MS.gene67279:CDS 45.0%
AATGCTCATGGCATCAAGCA+GGG + chr1.3:24284953-24284972 MS.gene67279:CDS 45.0%
ACACAGAAAGATGGTATCCC+AGG + chr1.3:24282836-24282855 MS.gene67279:CDS 45.0%
ACCAAGGCTACAGTTTGCAA+AGG - chr1.3:24283777-24283796 None:intergenic 45.0%
ACCACTTGAGACCAATCACT+TGG - chr1.3:24283522-24283541 None:intergenic 45.0%
AGAGCAGTAGTGGTGAACAT+TGG + chr1.3:24285068-24285087 MS.gene67279:CDS 45.0%
AGCCAAAGATTGTTTCAGCC+AGG - chr1.3:24283594-24283613 None:intergenic 45.0%
ATCTGTTCCTTTGTCAGGTG+GGG + chr1.3:24284815-24284834 MS.gene67279:intron 45.0%
CAAGAGTCCGGAACACAAAA+TGG + chr1.3:24282788-24282807 MS.gene67279:CDS 45.0%
CACCTACAAATGACACCATC+AGG - chr1.3:24283265-24283284 None:intergenic 45.0%
CATGACCAAAAATCAGGACC+TGG - chr1.3:24282857-24282876 None:intergenic 45.0%
CCATCAGGATTCACACCAAT+AGG - chr1.3:24283205-24283224 None:intergenic 45.0%
CCTATTGGTGTGAATCCTGA+TGG + chr1.3:24283202-24283221 MS.gene67279:CDS 45.0%
CTGAGAAATGGGCACACAAA+TGG + chr1.3:24283983-24284002 MS.gene67279:CDS 45.0%
GAAGGAACATCACTATCCAC+CGG - chr1.3:24282887-24282906 None:intergenic 45.0%
GAATGTAGAGTCTCCTTCTG+TGG + chr1.3:24283096-24283115 MS.gene67279:CDS 45.0%
GACCTTTCCTTCTCGATAAC+AGG - chr1.3:24282971-24282990 None:intergenic 45.0%
GAGCAGTAGTGGTGAACATT+GGG + chr1.3:24285069-24285088 MS.gene67279:CDS 45.0%
GATCTGTTCCTTTGTCAGGT+GGG + chr1.3:24284814-24284833 MS.gene67279:intron 45.0%
GCAGACAAATGGGGAAGAAA+TGG + chr1.3:24283904-24283923 MS.gene67279:CDS 45.0%
GCATGTGAACTTCTCGGATT+AGG + chr1.3:24282026-24282045 MS.gene67279:intron 45.0%
GCCAAAGATTGTTTCAGCCA+GGG - chr1.3:24283593-24283612 None:intergenic 45.0%
GGAATTGAGCAAAGACCTGA+TGG + chr1.3:24283247-24283266 MS.gene67279:CDS 45.0%
GGACCCAAATCCCTTAACTA+AGG + chr1.3:24282273-24282292 MS.gene67279:intron 45.0%
GGTGTCCATGACCAAAAATC+AGG - chr1.3:24282863-24282882 None:intergenic 45.0%
GTCTGGTCAAGCTGAGAAAT+GGG + chr1.3:24283972-24283991 MS.gene67279:CDS 45.0%
GTGATGAGTGGCAGGAAAAT+TGG + chr1.3:24283932-24283951 MS.gene67279:CDS 45.0%
GTTAACTCGCAGATTCTTCC+AGG - chr1.3:24284724-24284743 None:intergenic 45.0%
TAGGGTTCTTGCCTTTCAGA+AGG - chr1.3:24285193-24285212 None:intergenic 45.0%
TCCCTGGCTGAAACAATCTT+TGG + chr1.3:24283589-24283608 MS.gene67279:intron 45.0%
TCCTTTGCAAACTGTAGCCT+TGG + chr1.3:24283773-24283792 MS.gene67279:intron 45.0%
TGAATCCTGATGGAACGAGA+TGG + chr1.3:24283212-24283231 MS.gene67279:CDS 45.0%
TGATCTGTTCCTTTGTCAGG+TGG + chr1.3:24284813-24284832 MS.gene67279:intron 45.0%
TTCTGGTAGAGATCGGTCAT+CGG + chr1.3:24282377-24282396 MS.gene67279:intron 45.0%
! ACCCTCTTGTTTCCTGAGTT+CGG - chr1.3:24283637-24283656 None:intergenic 45.0%
! GAGCATTACATTGGTCTGAG+TGG + chr1.3:24282246-24282265 MS.gene67279:intron 45.0%
! GCTAGACTTTTCTTACCTCC+TGG + chr1.3:24283611-24283630 MS.gene67279:intron 45.0%
! GTATCCCAGGTCCTGATTTT+TGG + chr1.3:24282849-24282868 MS.gene67279:CDS 45.0%
! TACATTGGTCTGAGTGGAAC+TGG + chr1.3:24282252-24282271 MS.gene67279:intron 45.0%
! TCTGGATGGGTTCACAAGTA+CGG + chr1.3:24285043-24285062 MS.gene67279:CDS 45.0%
! TTCTCGGATTAGGTGTGTCT+CGG + chr1.3:24282036-24282055 MS.gene67279:intron 45.0%
!! AACCTTGGGTAAGGTTTTGG+AGG - chr1.3:24284678-24284697 None:intergenic 45.0%
!! AAGCGGTGAGTTTGTTGAAG+TGG - chr1.3:24281371-24281390 None:intergenic 45.0%
!! ACCAAGTGATTGGTCTCAAG+TGG + chr1.3:24283518-24283537 MS.gene67279:intron 45.0%
!! AGATGGTGGATGGGAGAAAT+GGG + chr1.3:24284901-24284920 MS.gene67279:CDS 45.0%
!! AGCAACACAATGGTTCTGGA+TGG + chr1.3:24285029-24285048 MS.gene67279:CDS 45.0%
!! AGCGGTGAGTTTGTTGAAGT+GGG - chr1.3:24281370-24281389 None:intergenic 45.0%
!! CATCGCAAATGAGCATTGAG+TGG - chr1.3:24284214-24284233 None:intergenic 45.0%
!! CTGATGGTGTCATTTGTAGG+TGG + chr1.3:24283263-24283282 MS.gene67279:CDS 45.0%
!! GAAACATATGACGGGTATGG+TGG + chr1.3:24284839-24284858 MS.gene67279:CDS 45.0%
!! GACCTGATGGTGTCATTTGT+AGG + chr1.3:24283260-24283279 MS.gene67279:CDS 45.0%
!! GATTGGTCTCAAGTGGTCAA+TGG + chr1.3:24283525-24283544 MS.gene67279:intron 45.0%
!! GCAACACAATGGTTCTGGAT+GGG + chr1.3:24285030-24285049 MS.gene67279:CDS 45.0%
!! GTGCTGACAAAGCTTTAGAG+TGG + chr1.3:24283305-24283324 MS.gene67279:CDS 45.0%
!! TGTTGGTGTCAAACCCTGAT+GGG - chr1.3:24282071-24282090 None:intergenic 45.0%
!! TTAGTAGGTGTCGTTCGTGT+CGG + chr1.3:24282126-24282145 MS.gene67279:intron 45.0%
!! TTTTTGGTCATGGACACCTC+CGG + chr1.3:24282865-24282884 MS.gene67279:CDS 45.0%
!!! CAGGTCCTGATTTTTGGTCA+TGG + chr1.3:24282855-24282874 MS.gene67279:CDS 45.0%
AAATGTGGTTGGGATGGGAG+GGG + chr1.3:24282325-24282344 MS.gene67279:intron 50.0%
ACCACTCCAGTCATCGTTAG+AGG + chr1.3:24283057-24283076 MS.gene67279:CDS 50.0%
ACCGATCTCTACCAGAAACC+TGG - chr1.3:24282374-24282393 None:intergenic 50.0%
ACCTCTAACGATGACTGGAG+TGG - chr1.3:24283061-24283080 None:intergenic 50.0%
ACTTGGGGTGAGCAACACAA+TGG + chr1.3:24285019-24285038 MS.gene67279:CDS 50.0%
AGAGTCTCCTTCTGTGGAAG+AGG + chr1.3:24283102-24283121 MS.gene67279:CDS 50.0%
AGCCTCCAAAACCTTACCCA+AGG + chr1.3:24284673-24284692 MS.gene67279:intron 50.0%
AGGTGGGGGGAAACATATGA+CGG + chr1.3:24284830-24284849 MS.gene67279:intron 50.0%
ATCCTGATGGAACGAGATGG+TGG + chr1.3:24283215-24283234 MS.gene67279:CDS 50.0%
ATGCTCATGTCTGGCACGAA+AGG + chr1.3:24284043-24284062 MS.gene67279:CDS 50.0%
CGTCTGGTCAAGCTGAGAAA+TGG + chr1.3:24283971-24283990 MS.gene67279:CDS 50.0%
CTCGAACTACTTCTGCTGCA+TGG - chr1.3:24283156-24283175 None:intergenic 50.0%
GATCTCTACCAGAAACCTGG+CGG - chr1.3:24282371-24282390 None:intergenic 50.0%
GCCGAACTCAGGAAACAAGA+GGG + chr1.3:24283633-24283652 MS.gene67279:intron 50.0%
GGAGAAATGGGGCGACAAAT+GGG + chr1.3:24284913-24284932 MS.gene67279:CDS 50.0%
GGTGAGCAACACAATGGTTC+TGG + chr1.3:24285025-24285044 MS.gene67279:CDS 50.0%
TACAGACACCAGACACGACA+TGG - chr1.3:24282163-24282182 None:intergenic 50.0%
TCCACCATCTGTTGAACGCT+CGG - chr1.3:24284891-24284910 None:intergenic 50.0%
TCTAACGATGACTGGAGTGG+TGG - chr1.3:24283058-24283077 None:intergenic 50.0%
TCTGTTCCTTTGTCAGGTGG+GGG + chr1.3:24284816-24284835 MS.gene67279:intron 50.0%
TGGGAGGCTTCTGATGAGTT+TGG + chr1.3:24283340-24283359 MS.gene67279:CDS 50.0%
TGGTAAAGGTGATGAGTGGC+AGG + chr1.3:24283924-24283943 MS.gene67279:CDS 50.0%
TGTAGGTGGACAGTGATCAG+AGG + chr1.3:24283277-24283296 MS.gene67279:CDS 50.0%
TTGGAGAGAATCCATGCGTC+AGG + chr1.3:24283426-24283445 MS.gene67279:CDS 50.0%
! ACATGGTGGGAAGGTAAGCA+CGG + chr1.3:24284980-24284999 MS.gene67279:CDS 50.0%
! GGAACACCGAATTTGTTCCC+TGG + chr1.3:24283573-24283592 MS.gene67279:intron 50.0%
! TGCTGCTAGAGCGCTTCTTA+AGG + chr1.3:24281524-24281543 MS.gene67279:CDS 50.0%
!! AACGAGATGGTGGAGAGAGA+CGG + chr1.3:24283225-24283244 MS.gene67279:CDS 50.0%
!! AGCGTTCAACAGATGGTGGA+TGG + chr1.3:24284891-24284910 MS.gene67279:CDS 50.0%
!! CAGATGGTGGATGGGAGAAA+TGG + chr1.3:24284900-24284919 MS.gene67279:CDS 50.0%
!! GATGGTGGATGGGAGAAATG+GGG + chr1.3:24284902-24284921 MS.gene67279:CDS 50.0%
!! GCCAGGTTTCTGGTAGAGAT+CGG + chr1.3:24282370-24282389 MS.gene67279:intron 50.0%
!! GCGTTCAACAGATGGTGGAT+GGG + chr1.3:24284892-24284911 MS.gene67279:CDS 50.0%
!! GGAAAACGGGCTACTGCATA+TGG + chr1.3:24283873-24283892 MS.gene67279:intron 50.0%
!! GGGGAAACATATGACGGGTA+TGG + chr1.3:24284836-24284855 MS.gene67279:CDS 50.0%
!! GTGTTGGTGTCAAACCCTGA+TGG - chr1.3:24282072-24282091 None:intergenic 50.0%
!! TAGGGACTGTGGTTTGGTGA+TGG + chr1.3:24281706-24281725 MS.gene67279:intron 50.0%
!!! AAGGTTTTGGAGGCTGACAC+AGG - chr1.3:24284668-24284687 None:intergenic 50.0%
!!! AGGTTTTGGAGGCTGACACA+GGG - chr1.3:24284667-24284686 None:intergenic 50.0%
!!! GTGGCAAGAGAAGTTTTGGG+AGG + chr1.3:24283324-24283343 MS.gene67279:CDS 50.0%
AAGGGAAGCAAAGTGGAGGG+TGG - chr1.3:24284619-24284638 None:intergenic 55.0%
AGGGAAGCAAAGTGGAGGGT+GGG - chr1.3:24284618-24284637 None:intergenic 55.0%
AGGGGAGACTCCACTATAGG+GGG + chr1.3:24282343-24282362 MS.gene67279:intron 55.0%
AGTAGTTCGAGCCCTCGAAG+TGG + chr1.3:24283165-24283184 MS.gene67279:CDS 55.0%
ATGCTGGGCATGCTCATGTC+TGG + chr1.3:24284034-24284053 MS.gene67279:CDS 55.0%
CAAACACACCCCTCGATGCT+GGG + chr1.3:24284019-24284038 MS.gene67279:CDS 55.0%
CAAGCAGGGAGAGACATGGT+GGG + chr1.3:24284967-24284986 MS.gene67279:CDS 55.0%
CTCCACCATCTCGTTCCATC+AGG - chr1.3:24283220-24283239 None:intergenic 55.0%
CTGTTCCTTTGTCAGGTGGG+GGG + chr1.3:24284817-24284836 MS.gene67279:intron 55.0%
CTTGTTTCCTGAGTTCGGCC+AGG - chr1.3:24283632-24283651 None:intergenic 55.0%
GAGGGGAGACTCCACTATAG+GGG + chr1.3:24282342-24282361 MS.gene67279:intron 55.0%
GATTAGGTGTGTCTCGGCGT+CGG + chr1.3:24282042-24282061 MS.gene67279:intron 55.0%
GCATCAAGCAGGGAGAGACA+TGG + chr1.3:24284963-24284982 MS.gene67279:CDS 55.0%
GGAACATCACTATCCACCGG+AGG - chr1.3:24282884-24282903 None:intergenic 55.0%
GGAGGGGAGACTCCACTATA+GGG + chr1.3:24282341-24282360 MS.gene67279:intron 55.0%
GGCCGAACTCAGGAAACAAG+AGG + chr1.3:24283632-24283651 MS.gene67279:intron 55.0%
GGGAGAAATGGGGCGACAAA+TGG + chr1.3:24284912-24284931 MS.gene67279:CDS 55.0%
GGTGGGGGGAAACATATGAC+GGG + chr1.3:24284831-24284850 MS.gene67279:intron 55.0%
GTCAGTGTCCATGTCGTGTC+TGG + chr1.3:24282152-24282171 MS.gene67279:intron 55.0%
TCAAGCAGGGAGAGACATGG+TGG + chr1.3:24284966-24284985 MS.gene67279:CDS 55.0%
TGTTTCCCCCCACCTGACAA+AGG - chr1.3:24284825-24284844 None:intergenic 55.0%
! ATGAGCATGCCCAGCATCGA+GGG - chr1.3:24284031-24284050 None:intergenic 55.0%
! CAGCATCGAGGGGTGTGTTT+GGG - chr1.3:24284020-24284039 None:intergenic 55.0%
! GACTGGAGTGGTGGAAGTGT+AGG - chr1.3:24283049-24283068 None:intergenic 55.0%
! TGTGTTGCTCACCCCAAGTC+CGG - chr1.3:24285018-24285037 None:intergenic 55.0%
!! ACGAGATGGTGGAGAGAGAC+GGG + chr1.3:24283226-24283245 MS.gene67279:CDS 55.0%
!! GGACTGTGGTTTGGTGATGG+AGG + chr1.3:24281709-24281728 MS.gene67279:intron 55.0%
AGGCTGACACAGGGTAGCCT+TGG - chr1.3:24284658-24284677 None:intergenic 60.0%
CATGAGCATGCCCAGCATCG+AGG - chr1.3:24284032-24284051 None:intergenic 60.0%
CCAAACACACCCCTCGATGC+TGG + chr1.3:24284018-24284037 MS.gene67279:CDS 60.0%
CTCACCGCTTCCAACGACGA+CGG + chr1.3:24281381-24281400 MS.gene67279:CDS 60.0%
CTTACCTCCTGGCCGAACTC+AGG + chr1.3:24283622-24283641 MS.gene67279:intron 60.0%
GCCGAGCGTTCAACAGATGG+TGG + chr1.3:24284887-24284906 MS.gene67279:CDS 60.0%
GGGAGGGGAGACTCCACTAT+AGG + chr1.3:24282340-24282359 MS.gene67279:intron 60.0%
GGGGAGACTCCACTATAGGG+GGG + chr1.3:24282344-24282363 MS.gene67279:intron 60.0%
GTTTCCTGAGTTCGGCCAGG+AGG - chr1.3:24283629-24283648 None:intergenic 60.0%
TGGGCCGAGCGTTCAACAGA+TGG + chr1.3:24284884-24284903 MS.gene67279:CDS 60.0%
TTGGTCATGGACACCTCCGG+TGG + chr1.3:24282868-24282887 MS.gene67279:CDS 60.0%
! AAGGTAAGCACGGAGAGCGC+TGG + chr1.3:24284990-24285009 MS.gene67279:CDS 60.0%
! CAGGGAGAGACATGGTGGGA+AGG + chr1.3:24284971-24284990 MS.gene67279:CDS 60.0%
! CCAGCATCGAGGGGTGTGTT+TGG - chr1.3:24284021-24284040 None:intergenic 60.0%
! TGAGCATGCCCAGCATCGAG+GGG - chr1.3:24284030-24284049 None:intergenic 60.0%
!! AGAGCGCTGGAACCGGACTT+GGG + chr1.3:24285003-24285022 MS.gene67279:CDS 60.0%
CACGCCGTCGTCGTTGGAAG+CGG - chr1.3:24281388-24281407 None:intergenic 65.0%
CTCTTCCACGCCGTCGTCGT+TGG - chr1.3:24281394-24281413 None:intergenic 65.0%
! TCGGCGTCGGACACCCATCA+GGG + chr1.3:24282055-24282074 MS.gene67279:intron 65.0%
!! AGCACGGAGAGCGCTGGAAC+CGG + chr1.3:24284996-24285015 MS.gene67279:CDS 65.0%
!! GAGAGCGCTGGAACCGGACT+TGG + chr1.3:24285002-24285021 MS.gene67279:CDS 65.0%
!! GAGCGCTGGAACCGGACTTG+GGG + chr1.3:24285004-24285023 MS.gene67279:CDS 65.0%
AGGGGGGTCCGCCAGGTTTC+TGG + chr1.3:24282360-24282379 MS.gene67279:intron 70.0%
CCACTATAGGGGGGTCCGCC+AGG + chr1.3:24282353-24282372 MS.gene67279:intron 70.0%
CGCTTCCAACGACGACGGCG+TGG + chr1.3:24281386-24281405 MS.gene67279:CDS 70.0%
! CCTGGCGGACCCCCCTATAG+TGG - chr1.3:24282356-24282375 None:intergenic 70.0%
! CTCGGCGTCGGACACCCATC+AGG + chr1.3:24282054-24282073 MS.gene67279:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 24281330 24285213 24281330 ID=MS.gene67279
chr1.3 mRNA 24281330 24285213 24281330 ID=MS.gene67279.t1;Parent=MS.gene67279
chr1.3 exon 24281330 24281597 24281330 ID=MS.gene67279.t1.exon1;Parent=MS.gene67279.t1
chr1.3 CDS 24281330 24281597 24281330 ID=cds.MS.gene67279.t1;Parent=MS.gene67279.t1
chr1.3 exon 24282750 24283447 24282750 ID=MS.gene67279.t1.exon2;Parent=MS.gene67279.t1
chr1.3 CDS 24282750 24283447 24282750 ID=cds.MS.gene67279.t1;Parent=MS.gene67279.t1
chr1.3 exon 24283874 24284064 24283874 ID=MS.gene67279.t1.exon3;Parent=MS.gene67279.t1
chr1.3 CDS 24283874 24284064 24283874 ID=cds.MS.gene67279.t1;Parent=MS.gene67279.t1
chr1.3 exon 24284832 24285213 24284832 ID=MS.gene67279.t1.exon4;Parent=MS.gene67279.t1
chr1.3 CDS 24284832 24285213 24284832 ID=cds.MS.gene67279.t1;Parent=MS.gene67279.t1
Gene Sequence

>MS.gene67279

ATGTGGAAGAAAGCCATAGAACGAGAAAGAAACACAACCCACTTCAACAAACTCACCGCTTCCAACGACGACGGCGTGGAAGAGAATCTAGAGAAGAAAACTCAAGAGTTTCAGAAGATTCTAGAGGTTTCAAGTGAGGAACGTGATAGGATTCAGAGATTGCAGGTTATTGATCGTGCTTCTGCTGCAATTGCTGCTGCTAGAGCGCTTCTTAAGGATGCTAATAGCAATAGTGTTCGTTCTGATGGAGATACGTTACAAAAATATGGTACTTTTTTTTTGTTTCAATTGCTTCTTTTGTTTGCTTTGAATTTGAATTTTTTGTTCTGATTTTTTGGCTTTTAGGGTTTTGGATATTTTGGTTAATTGAATAATGTAGGGACTGTGGTTTGGTGATGGAGGATTAGAGATAGATTCTATGGCTGAATTGCTTGTGAATTTAATTCCATATAAAATCAACTGGATTATTTTATTTTTGGAAAAATGCTATTTTTTTTGTTTTTTTTATTTTATTTCATGAAAACTAGACGATCAAAAATCAGTTTTTATTTATTTATTTATTATTAAGAGTAAAAATTGAATATAAAAGAACAAATCATTTTCACATTAAAAGTGAAAATGCAAAATATTTTCACCAAAATTTCATTAGAGTTTAATCTGGATGCACTTAGCTGTAAATTAGTTTTACACTATGAAGCATGTGAACTTCTCGGATTAGGTGTGTCTCGGCGTCGGACACCCATCAGGGTTTGACACCAACACATATGATTATACCGAATTATTTGGTTTTCTCAAATTAGTAGGTGTCGTTCGTGTCGGCGTGTCAGTGTCCATGTCGTGTCTGGTGTCTGTATCTTTGCATCATAGGTTTTACACTAAACTCTAATTAAAACTCCATACATTGCCACATAAGCATGAGCATTACATTGGTCTGAGTGGAACTGGACCCAAATCCCTTAACTAAGGTCTCTGGTTTGAGCCTTGTAGATGAAAAAAAATGTGGTTGGGATGGGAGGGGAGACTCCACTATAGGGGGGTCCGCCAGGTTTCTGGTAGAGATCGGTCATCGGTAAAATAACTGCAAAATATTGATTTTTTTTTGGGGGGACAATATTGAATTTTTATTTGATGTTAGTGTAAAACTAGTTTACAGCTGGGCATATCCCTTTTTCTCATGCCATTATGTAGTATTTTCATTATTTTTTAAATAAAATATTTTAAGACATGATTGAAGTCAAGAAAAGGATATTCTGTGTAGTAAAAAGTGGAAGGAAAACACAAGTTATGTTGAAGTTAAATTTTTTTTCTTAAACTAACAAGGCTCTCATTTTTTTCATTCATCTAAGTTAATGAATGTTGTACACGAAAGATGTTAGTGGTTGTTGATGTGTTGTTTTGTTCATTTTCAATGATCTGACAGAATCAGATTCAGGAAAGAAGAATGACAGTATTTTTGTGCAAGAGTCCGGAACACAAAATGGGACTCTTTTTGTGCCAAAATCAGGAACACAGAAAGATGGTATCCCAGGTCCTGATTTTTGGTCATGGACACCTCCGGTGGATAGTGATGTTCCTTCAAATGATGTTAATGGGTTGAAGTTAGATACCAAGTCTTCAGTTAATCCAACATTATCCAATCCTGTTATCGAGAAGGAAAGGTCGTCGCAATCTCTCTTGCTTCCATTTGAGAGTTTACTTACTCAAAGCAAAAACTTTCCTACACTTCCACCACTCCAGTCATCGTTAGAGGTTCAAACCGCTTCTTCGAATGTAGAGTCTCCTTCTGTGGAAGAGGAAAAGAAACGCGATGCGTTATCTTCCGACCATGCAGCAGAAGTAGTTCGAGCCCTCGAAGTGGACAGTAAATCATCACCTATTGGTGTGAATCCTGATGGAACGAGATGGTGGAGAGAGACGGGAATTGAGCAAAGACCTGATGGTGTCATTTGTAGGTGGACAGTGATCAGAGGTGTTAGTGCTGACAAAGCTTTAGAGTGGCAAGAGAAGTTTTGGGAGGCTTCTGATGAGTTTGGCTATAAGGAACTTGGTTCTGAGAAATCTGGACGTGATGCAAATGGAAATGTTTGGCGTGAATTTTGGAGAGAATCCATGCGTCAGGTTAGCATTATTTGATACATTTTGATTTTCATTTTAATTCGTTATTATAGTGTTATATAGTCACCTGAAAACCAAGTGATTGGTCTCAAGTGGTCAATGGACTGTACTTAAGGTCGAATCAATCAGGAACACCGAATTTGTTCCCTGGCTGAAACAATCTTTGGCTAGACTTTTCTTACCTCCTGGCCGAACTCAGGAAACAAGAGGGTTAAGACCAAAAATTTATAATCATCTGAAATCGGATTAGCATTCTTGTAGCCAATGTTTCTTAAGCTCTTCTACAATTGTTCTTAACTTCCCTCATAAATTAGTCGGTATGTAAGCGTCCTTTGCAAACTGTAGCCTTGGTGCATTCATGAATCTTATGAACCTACAGAGTGTTGGATACTTCAATAAAATCATACTGAGCATGATTATCAATGGCAGGAAAACGGGCTACTGCATATGGAGAAAACTGCAGACAAATGGGGAAGAAATGGTAAAGGTGATGAGTGGCAGGAAAATTGGTTTGAACACTACAATGCGTCTGGTCAAGCTGAGAAATGGGCACACAAATGGTGCAGTATTGACCCAAACACACCCCTCGATGCTGGGCATGCTCATGTCTGGCACGAAAGGTAACAACAATGTAGAACTAGATTATAATTTGAGCTCTGATCCTGTTTTCATAGTATTTAGTCCTTAAAGGTTTAGTGATCTTTCATTTCTTATGTATGTTTAAGATTCCTTTGTTTGCAAAAAAAAAGAATTTGAAACATTCATCCCACTCAATGCTCATTTGCGATGAATTTTTTTAAAACAAACAGGATATAAGCATGTCTCAGGGTGAAATAGATCAATAGACTGATCTATTTCGAGCTCAATTTGTGTTATTAATGTTATCAAACTCCAATATATTTTCTTCTGCACTATACGTAAGTTAAATCCCAAAAATATATATATTCAGTCATAATATCTACCCTCTAATGTACGAATTCATGTAATTTACAAAATTTTATATGTAGTATGCAAATATGAGTTTCCATTGCTTAATGTGTTTTTTGTTAATTTTTTAGGCTTATTTCTCTTGTATGATTTAAGTGAAAGGCTCCAACTTCTGCTCTTTGTATGCATTCAATTCTACTCAATGTTTTTTACTGAGCTGTTATGTATGTCATTTCGAGAGTTCCCACCCTCCACTTTGCTTCCCTTTTTAATCTAACTTATTCCAAGGCTACCCTGTGTCAGCCTCCAAAACCTTACCCAAGGTTTTGATAAATATTGCAAATAGCTTCCTGGAAGAATCTGCGAGTTAACGAAACTAGTTTATCATATTATATCTTAAGCAATAAGGAGTTACAGCTTGTTCTTTATTTTTAATCTTTGTGATCTGTTCCTTTGTCAGGTGGGGGGAAACATATGACGGGTATGGTGGCAGCATAAAATACACTGACAAATGGGCCGAGCGTTCAACAGATGGTGGATGGGAGAAATGGGGCGACAAATGGGATGAAAATTTCGATCTAAATGCTCATGGCATCAAGCAGGGAGAGACATGGTGGGAAGGTAAGCACGGAGAGCGCTGGAACCGGACTTGGGGTGAGCAACACAATGGTTCTGGATGGGTTCACAAGTACGGAAAGAGCAGTAGTGGTGAACATTGGGACACACACGAAATGCAAGATACTTGGTATGAAAGATTCCCTCATTTTGGTTTCTTTCACTGCTTTGAAAACTCGGTTCAACTCAGGGAAGTACAAAAACCTTCTGAAAGGCAAGAACCCTAA

Protein sequence

>MS.gene67279.t1

MWKKAIERERNTTHFNKLTASNDDGVEENLEKKTQEFQKILEVSSEERDRIQRLQVIDRASAAIAAARALLKDANSNSVRSDGDTLQKYESDSGKKNDSIFVQESGTQNGTLFVPKSGTQKDGIPGPDFWSWTPPVDSDVPSNDVNGLKLDTKSSVNPTLSNPVIEKERSSQSLLLPFESLLTQSKNFPTLPPLQSSLEVQTASSNVESPSVEEEKKRDALSSDHAAEVVRALEVDSKSSPIGVNPDGTRWWRETGIEQRPDGVICRWTVIRGVSADKALEWQEKFWEASDEFGYKELGSEKSGRDANGNVWREFWRESMRQENGLLHMEKTADKWGRNGKGDEWQENWFEHYNASGQAEKWAHKWCSIDPNTPLDAGHAHVWHERWGETYDGYGGSIKYTDKWAERSTDGGWEKWGDKWDENFDLNAHGIKQGETWWEGKHGERWNRTWGEQHNGSGWVHKYGKSSSGEHWDTHEMQDTWYERFPHFGFFHCFENSVQLREVQKPSERQEP