Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54795.t1 | AFK34304.1 | 98.3 | 175 | 3 | 0 | 1 | 175 | 106 | 280 | 2.00E-93 | 351.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54795.t1 | G7I387 | 98.3 | 175 | 3 | 0 | 1 | 175 | 106 | 280 | 1.4e-93 | 351.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene54795.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene54795 | 0.830893 | 2.27E-55 | -1.69E-46 |
| MS.gene049171 | MS.gene54795 | 0.818113 | 2.32E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene54795 | 0.807123 | 5.89E-50 | -1.69E-46 |
| MS.gene049257 | MS.gene54795 | 0.845473 | 3.97E-59 | -1.69E-46 |
| MS.gene049373 | MS.gene54795 | 0.821425 | 4.07E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene54795 | 0.822092 | 2.85E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene54795 | 0.816036 | 6.80E-52 | -1.69E-46 |
| MS.gene050133 | MS.gene54795 | -0.802643 | 5.09E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene54795 | 0.837272 | 5.73E-57 | -1.69E-46 |
| MS.gene050315 | MS.gene54795 | 0.85617 | 3.86E-62 | -1.69E-46 |
| MS.gene050400 | MS.gene54795 | 0.802497 | 5.46E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene54795 | -0.811546 | 6.63E-51 | -1.69E-46 |
| MS.gene050538 | MS.gene54795 | 0.809067 | 2.27E-50 | -1.69E-46 |
| MS.gene050553 | MS.gene54795 | 0.849495 | 3.12E-60 | -1.69E-46 |
| MS.gene050670 | MS.gene54795 | 0.818383 | 2.02E-52 | -1.69E-46 |
| MS.gene050747 | MS.gene54795 | 0.834831 | 2.39E-56 | -1.69E-46 |
| MS.gene05080 | MS.gene54795 | 0.817953 | 2.52E-52 | -1.69E-46 |
| MS.gene05081 | MS.gene54795 | 0.89594 | 5.94E-76 | -1.69E-46 |
| MS.gene050868 | MS.gene54795 | 0.823327 | 1.47E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene54795 | 0.822194 | 2.70E-53 | -1.69E-46 |
| MS.gene050904 | MS.gene54795 | 0.80994 | 1.48E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene54795 | 0.82638 | 2.80E-54 | -1.69E-46 |
| MS.gene051525 | MS.gene54795 | 0.846624 | 1.93E-59 | -1.69E-46 |
| MS.gene051552 | MS.gene54795 | -0.868073 | 8.56E-66 | -1.69E-46 |
| MS.gene051666 | MS.gene54795 | 0.809429 | 1.90E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene54795 | 0.90164 | 2.18E-78 | -1.69E-46 |
| MS.gene051858 | MS.gene54795 | 0.805566 | 1.25E-49 | -1.69E-46 |
| MS.gene051941 | MS.gene54795 | 0.832198 | 1.08E-55 | -1.69E-46 |
| MS.gene052011 | MS.gene54795 | -0.825097 | 5.64E-54 | -1.69E-46 |
| MS.gene052134 | MS.gene54795 | 0.819762 | 9.80E-53 | -1.69E-46 |
| MS.gene052136 | MS.gene54795 | 0.803441 | 3.48E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene54795 | 0.804093 | 2.55E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene54795 | 0.852118 | 5.69E-61 | -1.69E-46 |
| MS.gene052414 | MS.gene54795 | 0.85296 | 3.27E-61 | -1.69E-46 |
| MS.gene052469 | MS.gene54795 | 0.857205 | 1.91E-62 | -1.69E-46 |
| MS.gene052481 | MS.gene54795 | 0.810831 | 9.48E-51 | -1.69E-46 |
| MS.gene052501 | MS.gene54795 | 0.845331 | 4.34E-59 | -1.69E-46 |
| MS.gene052503 | MS.gene54795 | 0.829948 | 3.87E-55 | -1.69E-46 |
| MS.gene052505 | MS.gene54795 | 0.838015 | 3.70E-57 | -1.69E-46 |
| MS.gene052606 | MS.gene54795 | -0.808979 | 2.37E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene54795 | 0.826157 | 3.16E-54 | -1.69E-46 |
| MS.gene052823 | MS.gene54795 | 0.826915 | 2.09E-54 | -1.69E-46 |
| MS.gene052825 | MS.gene54795 | 0.83498 | 2.19E-56 | -1.69E-46 |
| MS.gene052870 | MS.gene54795 | 0.804362 | 2.24E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene54795 | 0.80924 | 2.09E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene54795 | 0.822729 | 2.03E-53 | -1.69E-46 |
| MS.gene052982 | MS.gene54795 | 0.853606 | 2.14E-61 | -1.69E-46 |
| MS.gene052999 | MS.gene54795 | 0.809284 | 2.04E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene54795 | 0.803445 | 3.47E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene54795 | 0.819206 | 1.31E-52 | -1.69E-46 |
| MS.gene053207 | MS.gene54795 | 0.809511 | 1.83E-50 | -1.69E-46 |
| MS.gene053318 | MS.gene54795 | 0.816695 | 4.84E-52 | -1.69E-46 |
| MS.gene053330 | MS.gene54795 | 0.801892 | 7.27E-49 | -1.69E-46 |
| MS.gene053479 | MS.gene54795 | 0.830231 | 3.30E-55 | -1.69E-46 |
| MS.gene053480 | MS.gene54795 | 0.829038 | 6.44E-55 | -1.69E-46 |
| MS.gene053824 | MS.gene54795 | 0.861309 | 1.12E-63 | -1.69E-46 |
| MS.gene053997 | MS.gene54795 | 0.838123 | 3.47E-57 | -1.69E-46 |
| MS.gene054107 | MS.gene54795 | 0.849376 | 3.36E-60 | -1.69E-46 |
| MS.gene054343 | MS.gene54795 | 0.811385 | 7.19E-51 | -1.69E-46 |
| MS.gene054344 | MS.gene54795 | 0.857916 | 1.18E-62 | -1.69E-46 |
| MS.gene054408 | MS.gene54795 | 0.821881 | 3.19E-53 | -1.69E-46 |
| MS.gene054600 | MS.gene54795 | 0.803938 | 2.75E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene54795 | 0.813063 | 3.09E-51 | -1.69E-46 |
| MS.gene054719 | MS.gene54795 | 0.806491 | 8.02E-50 | -1.69E-46 |
| MS.gene054884 | MS.gene54795 | -0.855006 | 8.42E-62 | -1.69E-46 |
| MS.gene054927 | MS.gene54795 | 0.827886 | 1.22E-54 | -1.69E-46 |
| MS.gene05494 | MS.gene54795 | 0.862776 | 3.99E-64 | -1.69E-46 |
| MS.gene055159 | MS.gene54795 | -0.857342 | 1.74E-62 | -1.69E-46 |
| MS.gene055206 | MS.gene54795 | 0.836284 | 1.02E-56 | -1.69E-46 |
| MS.gene055224 | MS.gene54795 | 0.812916 | 3.33E-51 | -1.69E-46 |
| MS.gene055289 | MS.gene54795 | 0.820901 | 5.37E-53 | -1.69E-46 |
| MS.gene055369 | MS.gene54795 | 0.804122 | 2.51E-49 | -1.69E-46 |
| MS.gene055370 | MS.gene54795 | 0.820749 | 5.82E-53 | -1.69E-46 |
| MS.gene055539 | MS.gene54795 | 0.865858 | 4.35E-65 | -1.69E-46 |
| MS.gene05556 | MS.gene54795 | 0.828983 | 6.64E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene54795 | 0.844675 | 6.53E-59 | -1.69E-46 |
| MS.gene055741 | MS.gene54795 | 0.876571 | 1.26E-68 | -1.69E-46 |
| MS.gene055744 | MS.gene54795 | 0.875529 | 2.87E-68 | -1.69E-46 |
| MS.gene055892 | MS.gene54795 | 0.801833 | 7.47E-49 | -1.69E-46 |
| MS.gene055893 | MS.gene54795 | 0.805156 | 1.53E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene54795 | 0.83821 | 3.29E-57 | -1.69E-46 |
| MS.gene055941 | MS.gene54795 | 0.816738 | 4.74E-52 | -1.69E-46 |
| MS.gene056166 | MS.gene54795 | 0.829544 | 4.85E-55 | -1.69E-46 |
| MS.gene056351 | MS.gene54795 | 0.814982 | 1.17E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene54795 | 0.809576 | 1.77E-50 | -1.69E-46 |
| MS.gene056514 | MS.gene54795 | 0.811285 | 7.56E-51 | -1.69E-46 |
| MS.gene056782 | MS.gene54795 | 0.803909 | 2.78E-49 | -1.69E-46 |
| MS.gene056877 | MS.gene54795 | 0.866352 | 3.04E-65 | -1.69E-46 |
| MS.gene057019 | MS.gene54795 | 0.836673 | 8.15E-57 | -1.69E-46 |
| MS.gene057048 | MS.gene54795 | 0.82611 | 3.25E-54 | -1.69E-46 |
| MS.gene057124 | MS.gene54795 | 0.845952 | 2.95E-59 | -1.69E-46 |
| MS.gene057196 | MS.gene54795 | 0.823427 | 1.39E-53 | -1.69E-46 |
| MS.gene057289 | MS.gene54795 | 0.834102 | 3.64E-56 | -1.69E-46 |
| MS.gene057332 | MS.gene54795 | 0.850074 | 2.15E-60 | -1.69E-46 |
| MS.gene057658 | MS.gene54795 | 0.846157 | 2.59E-59 | -1.69E-46 |
| MS.gene057823 | MS.gene54795 | 0.807349 | 5.28E-50 | -1.69E-46 |
| MS.gene057856 | MS.gene54795 | 0.812306 | 4.53E-51 | -1.69E-46 |
| MS.gene058120 | MS.gene54795 | 0.819706 | 1.01E-52 | -1.69E-46 |
| MS.gene058130 | MS.gene54795 | 0.81276 | 3.60E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene54795 | 0.80204 | 6.78E-49 | -1.69E-46 |
| MS.gene058338 | MS.gene54795 | 0.822718 | 2.04E-53 | -1.69E-46 |
| MS.gene058376 | MS.gene54795 | 0.833378 | 5.52E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene54795 | 0.854892 | 9.09E-62 | -1.69E-46 |
| MS.gene058418 | MS.gene54795 | -0.864905 | 8.68E-65 | -1.69E-46 |
| MS.gene058444 | MS.gene54795 | 0.867876 | 9.91E-66 | -1.69E-46 |
| MS.gene058544 | MS.gene54795 | 0.805787 | 1.13E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene54795 | 0.839754 | 1.31E-57 | -1.69E-46 |
| MS.gene058838 | MS.gene54795 | 0.857 | 2.20E-62 | -1.69E-46 |
| MS.gene058948 | MS.gene54795 | 0.8144 | 1.57E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene54795 | 0.872871 | 2.28E-67 | -1.69E-46 |
| MS.gene05914 | MS.gene54795 | 0.824741 | 6.85E-54 | -1.69E-46 |
| MS.gene059303 | MS.gene54795 | 0.872153 | 3.96E-67 | -1.69E-46 |
| MS.gene059420 | MS.gene54795 | 0.812934 | 3.30E-51 | -1.69E-46 |
| MS.gene059512 | MS.gene54795 | 0.855495 | 6.07E-62 | -1.69E-46 |
| MS.gene05960 | MS.gene54795 | -0.81665 | 4.96E-52 | -1.69E-46 |
| MS.gene059717 | MS.gene54795 | 0.81578 | 7.76E-52 | -1.69E-46 |
| MS.gene059853 | MS.gene54795 | -0.80124 | 9.89E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene54795 | 0.802142 | 6.46E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene54795 | 0.81475 | 1.31E-51 | -1.69E-46 |
| MS.gene060087 | MS.gene54795 | -0.804034 | 2.62E-49 | -1.69E-46 |
| MS.gene06027 | MS.gene54795 | 0.815575 | 8.62E-52 | -1.69E-46 |
| MS.gene060372 | MS.gene54795 | 0.826725 | 2.32E-54 | -1.69E-46 |
| MS.gene060485 | MS.gene54795 | 0.837223 | 5.90E-57 | -1.69E-46 |
| MS.gene060593 | MS.gene54795 | -0.806016 | 1.01E-49 | -1.69E-46 |
| MS.gene060717 | MS.gene54795 | 0.819418 | 1.17E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene54795 | 0.811126 | 8.18E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene54795 | 0.807151 | 5.82E-50 | -1.69E-46 |
| MS.gene060835 | MS.gene54795 | 0.805932 | 1.05E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene54795 | 0.841136 | 5.71E-58 | -1.69E-46 |
| MS.gene061154 | MS.gene54795 | 0.828358 | 9.40E-55 | -1.69E-46 |
| MS.gene061231 | MS.gene54795 | 0.850196 | 1.98E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54795.t1 | MTR_1g095000 | 98.286 | 175 | 3 | 0 | 1 | 175 | 106 | 280 | 5.86e-127 | 358 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54795.t1 | AT2G39000 | 74.419 | 172 | 44 | 0 | 1 | 172 | 55 | 226 | 5.02e-97 | 280 |
| MS.gene54795.t1 | AT2G39000 | 74.419 | 172 | 44 | 0 | 1 | 172 | 111 | 282 | 9.40e-97 | 282 |
| MS.gene54795.t1 | AT2G39000 | 77.500 | 80 | 18 | 0 | 1 | 80 | 111 | 190 | 4.80e-41 | 137 |
| MS.gene54795.t1 | AT2G39000 | 77.215 | 79 | 18 | 0 | 1 | 79 | 111 | 189 | 2.88e-40 | 136 |
Find 43 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGATCAAACTTTCTTATT+TGG | 0.151315 | 1.2:+73150714 | MS.gene54795:CDS |
| ACCTGTCTGGTTGCTGTTAT+TGG | 0.195810 | 1.2:+73150684 | MS.gene54795:CDS |
| TTTCAAATCTATAAAGGTTC+CGG | 0.297267 | 1.2:+73152110 | MS.gene54795:CDS |
| TGTCGCAGAGGCCCCTTTCT+AGG | 0.313734 | 1.2:-73150837 | None:intergenic |
| GCAAGGTTTCAAATCTATAA+AGG | 0.323365 | 1.2:+73152104 | MS.gene54795:CDS |
| GGCACGACATCCCCAACTTC+TGG | 0.376576 | 1.2:-73152028 | None:intergenic |
| AGTGAAGACTTCAAGATTGC+GGG | 0.393136 | 1.2:+73150738 | MS.gene54795:CDS |
| TTCAAATCTATAAAGGTTCC+GGG | 0.414198 | 1.2:+73152111 | MS.gene54795:CDS |
| TGTGTTGAGGATGGATAGAT+TGG | 0.415569 | 1.2:+73150617 | None:intergenic |
| AGAATCACAAGCCAGAAGTT+GGG | 0.428773 | 1.2:+73152017 | MS.gene54795:CDS |
| AGGTTCCGGGAGGAGCTAAC+TGG | 0.431391 | 1.2:+73152124 | MS.gene54795:CDS |
| AGCTAAACAATTGGTGGCTA+AGG | 0.435007 | 1.2:+73151993 | MS.gene54795:CDS |
| TGCAGACTTTCTACCTAGAA+AGG | 0.446932 | 1.2:+73150824 | MS.gene54795:CDS |
| ATGAAGTTGAACTTCACATC+TGG | 0.450823 | 1.2:-73152165 | None:intergenic |
| CAGAATCACAAGCCAGAAGT+TGG | 0.456663 | 1.2:+73152016 | MS.gene54795:CDS |
| GCAGGATTCTCTTTACCAAA+TGG | 0.460775 | 1.2:+73150651 | MS.gene54795:CDS |
| GAAAGGAATAGCTAAACAAT+TGG | 0.467703 | 1.2:+73151984 | MS.gene54795:CDS |
| GCAGACTTTCTACCTAGAAA+GGG | 0.481732 | 1.2:+73150825 | MS.gene54795:CDS |
| TAGATTTGAAACCTTGCCCT+TGG | 0.481800 | 1.2:-73152098 | None:intergenic |
| TGGTATAACTTTGTTGCCGC+AGG | 0.491255 | 1.2:-73152078 | None:intergenic |
| AGATTGGTGGCTATGTTAGC+AGG | 0.496959 | 1.2:+73150633 | MS.gene54795:CDS |
| CTCAACAAGGGATATGTGGC+TGG | 0.532427 | 1.2:+73150780 | MS.gene54795:CDS |
| GCCAATAACAGCAACCAGAC+AGG | 0.535502 | 1.2:-73150685 | None:intergenic |
| GAATCACAAGCCAGAAGTTG+GGG | 0.540089 | 1.2:+73152018 | MS.gene54795:CDS |
| AAGCCTCAACAAGGGATATG+TGG | 0.555870 | 1.2:+73150776 | MS.gene54795:CDS |
| AGGAATAGCTAAACAATTGG+TGG | 0.557067 | 1.2:+73151987 | MS.gene54795:CDS |
| TGGTTGCAAAAGAACCTGTC+TGG | 0.566369 | 1.2:+73150671 | MS.gene54795:CDS |
| AAGTGAAGACTTCAAGATTG+CGG | 0.578803 | 1.2:+73150737 | MS.gene54795:CDS |
| GTTGAGGATGGATAGATTGG+TGG | 0.579094 | 1.2:+73150620 | None:intergenic |
| AGGGGCCTCTGCGACAGAGA+AGG | 0.581862 | 1.2:+73150844 | MS.gene54795:CDS |
| TGAGGCCAGTTAGCTCCTCC+CGG | 0.584487 | 1.2:-73152129 | None:intergenic |
| CAGCCACATATCCCTTGTTG+AGG | 0.606889 | 1.2:-73150779 | None:intergenic |
| ACAAAGTTATACCAAGGGCA+AGG | 0.614543 | 1.2:+73152087 | MS.gene54795:CDS |
| TGGGAAATTAAGCCTCAACA+AGG | 0.631474 | 1.2:+73150767 | MS.gene54795:CDS |
| TAAATCGCAGTGTAATGCAA+TGG | 0.632285 | 1.2:-73152049 | None:intergenic |
| CAGACTTTCTACCTAGAAAG+GGG | 0.636163 | 1.2:+73150826 | MS.gene54795:CDS |
| AATTGCATACATATCAAATG+TGG | 0.643430 | 1.2:+73151939 | MS.gene54795:CDS |
| CGGCAACAAAGTTATACCAA+GGG | 0.644825 | 1.2:+73152082 | MS.gene54795:CDS |
| GCGGCAACAAAGTTATACCA+AGG | 0.651915 | 1.2:+73152081 | MS.gene54795:CDS |
| ACTCACCTTCTCTGTCGCAG+AGG | 0.668717 | 1.2:-73150849 | None:intergenic |
| GGGAAATTAAGCCTCAACAA+GGG | 0.686786 | 1.2:+73150768 | MS.gene54795:CDS |
| CTGCGATTTACGAAATCCTG+CGG | 0.698179 | 1.2:+73152062 | MS.gene54795:CDS |
| AAATCTATAAAGGTTCCGGG+AGG | 0.724022 | 1.2:+73152114 | MS.gene54795:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAATTTTAACATGTTT+TGG | - | chr1.2:73151157-73151176 | None:intergenic | 10.0% |
| !! | TTATGTATAAAAACTATTGT+AGG | + | chr1.2:73151911-73151930 | MS.gene54795:intron | 15.0% |
| !!! | ATAAAAAGTAGTTTGTATTT+TGG | - | chr1.2:73151111-73151130 | None:intergenic | 15.0% |
| !!! | TGTATCTTTTTCTTATAATT+GGG | - | chr1.2:73151353-73151372 | None:intergenic | 15.0% |
| !!! | TTGTATCTTTTTCTTATAAT+TGG | - | chr1.2:73151354-73151373 | None:intergenic | 15.0% |
| !! | ATCAAAATTATAGCATTAAG+TGG | + | chr1.2:73151505-73151524 | MS.gene54795:intron | 20.0% |
| !!! | ATTTAATTTAGAGTCATGTT+TGG | + | chr1.2:73151474-73151493 | MS.gene54795:intron | 20.0% |
| !!! | TATGTTTCTAACTATGTATA+AGG | + | chr1.2:73151814-73151833 | MS.gene54795:intron | 20.0% |
| !!! | TTTAATTTAGAGTCATGTTT+GGG | + | chr1.2:73151475-73151494 | MS.gene54795:intron | 20.0% |
| ! | AATTGCATACATATCAAATG+TGG | + | chr1.2:73151939-73151958 | MS.gene54795:CDS | 25.0% |
| ! | AGAGAAAAATTTAGACAGAA+AGG | + | chr1.2:73151967-73151986 | MS.gene54795:CDS | 25.0% |
| ! | AGATAACTTGAAAATTACAC+AGG | - | chr1.2:73151073-73151092 | None:intergenic | 25.0% |
| ! | ATATGGAATAGATGCATTAA+AGG | - | chr1.2:73151424-73151443 | None:intergenic | 25.0% |
| ! | ATCTATTCCATATAAACAGT+AGG | + | chr1.2:73151431-73151450 | MS.gene54795:intron | 25.0% |
| ! | ATGCATTAAAGGACAAAATA+AGG | - | chr1.2:73151413-73151432 | None:intergenic | 25.0% |
| ! | CTTGATCAAACTTTCTTATT+TGG | + | chr1.2:73150714-73150733 | MS.gene54795:CDS | 25.0% |
| ! | TATAAAAACTATTGTAGGAC+TGG | + | chr1.2:73151916-73151935 | MS.gene54795:intron | 25.0% |
| ! | TGCATTAAAGGACAAAATAA+GGG | - | chr1.2:73151412-73151431 | None:intergenic | 25.0% |
| ! | TTTCAAATCTATAAAGGTTC+CGG | + | chr1.2:73152110-73152129 | MS.gene54795:CDS | 25.0% |
| !! | AACATAGTTTACCATTTTGA+AGG | - | chr1.2:73151800-73151819 | None:intergenic | 25.0% |
| !! | ACATAGTTTACCATTTTGAA+GGG | - | chr1.2:73151799-73151818 | None:intergenic | 25.0% |
| !! | ATCTTTTTCTTATAATTGGG+AGG | - | chr1.2:73151350-73151369 | None:intergenic | 25.0% |
| !!! | ACAAACTACTTTTTATCTAG+AGG | + | chr1.2:73151115-73151134 | MS.gene54795:intron | 25.0% |
| !!! | ATTGTTTTTTTCTTTGACCA+GGG | + | chr1.2:73151544-73151563 | MS.gene54795:intron | 25.0% |
| !!! | TAAAACTTGTTTCTGAATCT+GGG | + | chr1.2:73150872-73150891 | MS.gene54795:intron | 25.0% |
| !!! | TTAAAACTTGTTTCTGAATC+TGG | + | chr1.2:73150871-73150890 | MS.gene54795:intron | 25.0% |
| AAAAATTGTTGAGACATGTC+TGG | - | chr1.2:73151211-73151230 | None:intergenic | 30.0% | |
| ACTAGTAACATGAGTAAACT+AGG | - | chr1.2:73151865-73151884 | None:intergenic | 30.0% | |
| GAAAATTACACAGGAATGAA+AGG | - | chr1.2:73151064-73151083 | None:intergenic | 30.0% | |
| GAAAGGAATAGCTAAACAAT+TGG | + | chr1.2:73151984-73152003 | MS.gene54795:CDS | 30.0% | |
| GCAAGGTTTCAAATCTATAA+AGG | + | chr1.2:73152104-73152123 | MS.gene54795:CDS | 30.0% | |
| TCTAAATTAAATGCTCTTCG+AGG | - | chr1.2:73151466-73151485 | None:intergenic | 30.0% | |
| TTCAAATCTATAAAGGTTCC+GGG | + | chr1.2:73152111-73152130 | MS.gene54795:CDS | 30.0% | |
| !! | TTCTGTTTTAAACAAGTGCA+AGG | - | chr1.2:73151677-73151696 | None:intergenic | 30.0% |
| !!! | GATTGTTTTTTTCTTTGACC+AGG | + | chr1.2:73151543-73151562 | MS.gene54795:intron | 30.0% |
| AAGTGAAGACTTCAAGATTG+CGG | + | chr1.2:73150737-73150756 | MS.gene54795:CDS | 35.0% | |
| AATTAAATGCTCTTCGAGGA+TGG | - | chr1.2:73151462-73151481 | None:intergenic | 35.0% | |
| AGGAATAGCTAAACAATTGG+TGG | + | chr1.2:73151987-73152006 | MS.gene54795:CDS | 35.0% | |
| ATGAAGTTGAACTTCACATC+TGG | - | chr1.2:73152168-73152187 | None:intergenic | 35.0% | |
| ATGTGATAAATGTTACTCCC+TGG | - | chr1.2:73151564-73151583 | None:intergenic | 35.0% | |
| CCAGTCTCATGTATAAGAAA+AGG | + | chr1.2:73151310-73151329 | MS.gene54795:intron | 35.0% | |
| GGTAACACCTACTGTTTATA+TGG | - | chr1.2:73151441-73151460 | None:intergenic | 35.0% | |
| TAAATCGCAGTGTAATGCAA+TGG | - | chr1.2:73152052-73152071 | None:intergenic | 35.0% | |
| TCTCTTCATATTGATCACTG+AGG | + | chr1.2:73151704-73151723 | MS.gene54795:intron | 35.0% | |
| TTCTTATACATGAGACTGGA+GGG | - | chr1.2:73151309-73151328 | None:intergenic | 35.0% | |
| TTTCTTATACATGAGACTGG+AGG | - | chr1.2:73151310-73151329 | None:intergenic | 35.0% | |
| ! | CCTTTTCTTATACATGAGAC+TGG | - | chr1.2:73151313-73151332 | None:intergenic | 35.0% |
| ! | TTCACATCTGGAGAAGTTTT+TGG | - | chr1.2:73152156-73152175 | None:intergenic | 35.0% |
| !! | AGACAAGCTAGAAGCATTTA+AGG | - | chr1.2:73151265-73151284 | None:intergenic | 35.0% |
| AAATCTATAAAGGTTCCGGG+AGG | + | chr1.2:73152114-73152133 | MS.gene54795:CDS | 40.0% | |
| ACAAAGTTATACCAAGGGCA+AGG | + | chr1.2:73152087-73152106 | MS.gene54795:CDS | 40.0% | |
| AGAATCACAAGCCAGAAGTT+GGG | + | chr1.2:73152017-73152036 | MS.gene54795:CDS | 40.0% | |
| AGTGAAGACTTCAAGATTGC+GGG | + | chr1.2:73150738-73150757 | MS.gene54795:CDS | 40.0% | |
| ATTGATCACTGAGGCAAGAA+TGG | + | chr1.2:73151713-73151732 | MS.gene54795:intron | 40.0% | |
| CAGACTTTCTACCTAGAAAG+GGG | + | chr1.2:73150826-73150845 | MS.gene54795:CDS | 40.0% | |
| CGGCAACAAAGTTATACCAA+GGG | + | chr1.2:73152082-73152101 | MS.gene54795:CDS | 40.0% | |
| GCAGACTTTCTACCTAGAAA+GGG | + | chr1.2:73150825-73150844 | MS.gene54795:CDS | 40.0% | |
| GCAGGATTCTCTTTACCAAA+TGG | + | chr1.2:73150651-73150670 | MS.gene54795:CDS | 40.0% | |
| GGGAAATTAAGCCTCAACAA+GGG | + | chr1.2:73150768-73150787 | MS.gene54795:CDS | 40.0% | |
| TCCTGCATTACCCTTCAAAA+TGG | + | chr1.2:73151786-73151805 | MS.gene54795:intron | 40.0% | |
| TGACATGCGATGAAAGAACA+TGG | - | chr1.2:73151629-73151648 | None:intergenic | 40.0% | |
| TGCAGACTTTCTACCTAGAA+AGG | + | chr1.2:73150824-73150843 | MS.gene54795:CDS | 40.0% | |
| TGGGAAATTAAGCCTCAACA+AGG | + | chr1.2:73150767-73150786 | MS.gene54795:CDS | 40.0% | |
| ! | AGCTAAACAATTGGTGGCTA+AGG | + | chr1.2:73151993-73152012 | MS.gene54795:CDS | 40.0% |
| ! | CAGGTTCTTTTGCAACCATT+TGG | - | chr1.2:73150669-73150688 | None:intergenic | 40.0% |
| ! | TAGATTTGAAACCTTGCCCT+TGG | - | chr1.2:73152101-73152120 | None:intergenic | 40.0% |
| !! | ACCATTTTGAAGGGTAATGC+AGG | - | chr1.2:73151790-73151809 | None:intergenic | 40.0% |
| !! | CTGAGGCAAGAATGGATTTT+TGG | + | chr1.2:73151721-73151740 | MS.gene54795:intron | 40.0% |
| !! | TCAAGATTGCGGGTTTTGAT+GGG | + | chr1.2:73150748-73150767 | MS.gene54795:CDS | 40.0% |
| !! | TTCAAGATTGCGGGTTTTGA+TGG | + | chr1.2:73150747-73150766 | MS.gene54795:CDS | 40.0% |
| !!! | TCTGGAGAAGTTTTTGGTTG+AGG | - | chr1.2:73152150-73152169 | None:intergenic | 40.0% |
| AAGCCTCAACAAGGGATATG+TGG | + | chr1.2:73150776-73150795 | MS.gene54795:CDS | 45.0% | |
| ACACAGGAATGAAAGGCAAG+CGG | - | chr1.2:73151057-73151076 | None:intergenic | 45.0% | |
| CAGAATCACAAGCCAGAAGT+TGG | + | chr1.2:73152016-73152035 | MS.gene54795:CDS | 45.0% | |
| CGCATGTCAATAGTTCTTCG+TGG | + | chr1.2:73151640-73151659 | MS.gene54795:intron | 45.0% | |
| CTGAATTCGCTCTTGTCTTC+CGG | + | chr1.2:73151182-73151201 | MS.gene54795:intron | 45.0% | |
| CTGCGATTTACGAAATCCTG+CGG | + | chr1.2:73152062-73152081 | MS.gene54795:CDS | 45.0% | |
| GAATCACAAGCCAGAAGTTG+GGG | + | chr1.2:73152018-73152037 | MS.gene54795:CDS | 45.0% | |
| GCGGCAACAAAGTTATACCA+AGG | + | chr1.2:73152081-73152100 | MS.gene54795:CDS | 45.0% | |
| TGAATCTGGGTTTGTGAGTG+AGG | + | chr1.2:73150885-73150904 | MS.gene54795:intron | 45.0% | |
| TGGTATAACTTTGTTGCCGC+AGG | - | chr1.2:73152081-73152100 | None:intergenic | 45.0% | |
| TGGTTGCAAAAGAACCTGTC+TGG | + | chr1.2:73150671-73150690 | MS.gene54795:CDS | 45.0% | |
| ! | ACCTGTCTGGTTGCTGTTAT+TGG | + | chr1.2:73150684-73150703 | MS.gene54795:CDS | 45.0% |
| ! | AGATTGGTGGCTATGTTAGC+AGG | + | chr1.2:73150633-73150652 | MS.gene54795:CDS | 45.0% |
| CAGCCACATATCCCTTGTTG+AGG | - | chr1.2:73150782-73150801 | None:intergenic | 50.0% | |
| CTCAACAAGGGATATGTGGC+TGG | + | chr1.2:73150780-73150799 | MS.gene54795:CDS | 50.0% | |
| GCCAATAACAGCAACCAGAC+AGG | - | chr1.2:73150688-73150707 | None:intergenic | 50.0% | |
| GTTGAGACATGTCTGGACTC+CGG | - | chr1.2:73151204-73151223 | None:intergenic | 50.0% | |
| ! | ATGAGACTGGAGGGAGTATG+TGG | - | chr1.2:73151300-73151319 | None:intergenic | 50.0% |
| ACTCACCTTCTCTGTCGCAG+AGG | - | chr1.2:73150852-73150871 | None:intergenic | 55.0% | |
| AGGTTCCGGGAGGAGCTAAC+TGG | + | chr1.2:73152124-73152143 | MS.gene54795:CDS | 60.0% | |
| GGCACGACATCCCCAACTTC+TGG | - | chr1.2:73152031-73152050 | None:intergenic | 60.0% | |
| TGAGGCCAGTTAGCTCCTCC+CGG | - | chr1.2:73152132-73152151 | None:intergenic | 60.0% | |
| TGTCGCAGAGGCCCCTTTCT+AGG | - | chr1.2:73150840-73150859 | None:intergenic | 60.0% | |
| AGGGGCCTCTGCGACAGAGA+AGG | + | chr1.2:73150844-73150863 | MS.gene54795:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 73150627 | 73152221 | 73150627 | ID=MS.gene54795 |
| chr1.2 | mRNA | 73150627 | 73152221 | 73150627 | ID=MS.gene54795.t1;Parent=MS.gene54795 |
| chr1.2 | exon | 73150627 | 73150865 | 73150627 | ID=MS.gene54795.t1.exon1;Parent=MS.gene54795.t1 |
| chr1.2 | CDS | 73150627 | 73150865 | 73150627 | ID=cds.MS.gene54795.t1;Parent=MS.gene54795.t1 |
| chr1.2 | exon | 73151933 | 73152221 | 73151933 | ID=MS.gene54795.t1.exon2;Parent=MS.gene54795.t1 |
| chr1.2 | CDS | 73151933 | 73152221 | 73151933 | ID=cds.MS.gene54795.t1;Parent=MS.gene54795.t1 |
| Gene Sequence |
| Protein sequence |
