Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068350.t1 | XP_024627594.1 | 89.8 | 225 | 22 | 1 | 1 | 225 | 13 | 236 | 2.70E-103 | 384.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068350.t1 | O81223 | 60.0 | 220 | 82 | 1 | 5 | 224 | 3 | 216 | 6.5e-69 | 261.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068350.t1 | G8A2Y4 | 89.8 | 225 | 22 | 1 | 1 | 225 | 13 | 236 | 2.0e-103 | 384.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene068350 | 0.819789 | 9.66E-53 | -1.69E-46 |
| MS.gene04920 | MS.gene068350 | 0.812626 | 3.86E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene068350 | 0.812997 | 3.20E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene068350 | 0.831499 | 1.61E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene068350 | 0.827578 | 1.45E-54 | -1.69E-46 |
| MS.gene049825 | MS.gene068350 | 0.83117 | 1.94E-55 | -1.69E-46 |
| MS.gene049983 | MS.gene068350 | 0.800951 | 1.13E-48 | -1.69E-46 |
| MS.gene050300 | MS.gene068350 | -0.802832 | 4.65E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene068350 | 0.802046 | 6.75E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene068350 | 0.818149 | 2.28E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene068350 | 0.80133 | 9.47E-49 | -1.69E-46 |
| MS.gene051832 | MS.gene068350 | 0.813893 | 2.03E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene068350 | 0.811588 | 6.50E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene068350 | 0.813519 | 2.46E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene068350 | 0.800766 | 1.24E-48 | -1.69E-46 |
| MS.gene052533 | MS.gene068350 | 0.812083 | 5.07E-51 | -1.69E-46 |
| MS.gene052534 | MS.gene068350 | 0.820609 | 6.27E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene068350 | 0.804507 | 2.09E-49 | -1.69E-46 |
| MS.gene052586 | MS.gene068350 | 0.820988 | 5.13E-53 | -1.69E-46 |
| MS.gene052685 | MS.gene068350 | 0.839444 | 1.58E-57 | -1.69E-46 |
| MS.gene052889 | MS.gene068350 | 0.810954 | 8.92E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene068350 | 0.808379 | 3.19E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene068350 | 0.828091 | 1.09E-54 | -1.69E-46 |
| MS.gene053321 | MS.gene068350 | 0.804708 | 1.90E-49 | -1.69E-46 |
| MS.gene05365 | MS.gene068350 | 0.824554 | 7.58E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene068350 | 0.845184 | 4.76E-59 | -1.69E-46 |
| MS.gene054222 | MS.gene068350 | 0.838948 | 2.12E-57 | -1.69E-46 |
| MS.gene054479 | MS.gene068350 | 0.820042 | 8.45E-53 | -1.69E-46 |
| MS.gene054576 | MS.gene068350 | 0.810993 | 8.74E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene068350 | 0.806003 | 1.02E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene068350 | 0.806509 | 7.95E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene068350 | 0.815766 | 7.81E-52 | -1.69E-46 |
| MS.gene055586 | MS.gene068350 | 0.805267 | 1.45E-49 | -1.69E-46 |
| MS.gene056068 | MS.gene068350 | 0.820362 | 7.14E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene068350 | 0.808025 | 3.79E-50 | -1.69E-46 |
| MS.gene05636 | MS.gene068350 | 0.830545 | 2.77E-55 | -1.69E-46 |
| MS.gene056403 | MS.gene068350 | 0.834132 | 3.58E-56 | -1.69E-46 |
| MS.gene056605 | MS.gene068350 | 0.822864 | 1.89E-53 | -1.69E-46 |
| MS.gene056776 | MS.gene068350 | 0.800329 | 1.52E-48 | -1.69E-46 |
| MS.gene05689 | MS.gene068350 | 0.84521 | 4.68E-59 | -1.69E-46 |
| MS.gene056986 | MS.gene068350 | 0.819649 | 1.04E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene068350 | 0.858807 | 6.39E-63 | -1.69E-46 |
| MS.gene057208 | MS.gene068350 | 0.804001 | 2.66E-49 | -1.69E-46 |
| MS.gene057890 | MS.gene068350 | -0.802179 | 6.34E-49 | -1.69E-46 |
| MS.gene057893 | MS.gene068350 | -0.822797 | 1.95E-53 | -1.69E-46 |
| MS.gene058159 | MS.gene068350 | 0.848675 | 5.27E-60 | -1.69E-46 |
| MS.gene058279 | MS.gene068350 | 0.806096 | 9.71E-50 | -1.69E-46 |
| MS.gene058498 | MS.gene068350 | 0.816131 | 6.48E-52 | -1.69E-46 |
| MS.gene058500 | MS.gene068350 | 0.817636 | 2.98E-52 | -1.69E-46 |
| MS.gene058781 | MS.gene068350 | 0.800519 | 1.39E-48 | -1.69E-46 |
| MS.gene059144 | MS.gene068350 | 0.802186 | 6.32E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene068350 | 0.830532 | 2.79E-55 | -1.69E-46 |
| MS.gene05985 | MS.gene068350 | -0.85331 | 2.60E-61 | -1.69E-46 |
| MS.gene059901 | MS.gene068350 | -0.806582 | 7.67E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene068350 | 0.834633 | 2.68E-56 | -1.69E-46 |
| MS.gene060012 | MS.gene068350 | 0.805413 | 1.35E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene068350 | 0.810934 | 9.01E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene068350 | 0.840844 | 6.81E-58 | -1.69E-46 |
| MS.gene060763 | MS.gene068350 | 0.809149 | 2.18E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene068350 | 0.821337 | 4.26E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene068350 | 0.814247 | 1.70E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene068350 | 0.828669 | 7.90E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene068350 | 0.841866 | 3.66E-58 | -1.69E-46 |
| MS.gene061188 | MS.gene068350 | 0.820563 | 6.42E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068350.t1 | MTR_8g027620 | 95.111 | 225 | 10 | 1 | 1 | 225 | 13 | 236 | 1.33e-155 | 434 |
| MS.gene068350.t1 | MTR_3g091440 | 68.020 | 197 | 63 | 0 | 28 | 224 | 17 | 213 | 8.76e-95 | 276 |
| MS.gene068350.t1 | MTR_3g091440 | 65.445 | 191 | 66 | 0 | 34 | 224 | 24 | 214 | 6.24e-88 | 259 |
| MS.gene068350.t1 | MTR_8g099575 | 61.026 | 195 | 76 | 0 | 28 | 222 | 16 | 210 | 1.58e-84 | 250 |
| MS.gene068350.t1 | MTR_4g099210 | 55.897 | 195 | 86 | 0 | 28 | 222 | 16 | 210 | 2.08e-77 | 232 |
| MS.gene068350.t1 | MTR_3g060730 | 54.146 | 205 | 92 | 1 | 21 | 223 | 22 | 226 | 2.52e-76 | 229 |
| MS.gene068350.t1 | MTR_1g016430 | 56.923 | 195 | 84 | 0 | 26 | 220 | 53 | 247 | 1.09e-75 | 229 |
| MS.gene068350.t1 | MTR_4g134250 | 55.208 | 192 | 86 | 0 | 32 | 223 | 36 | 227 | 2.26e-75 | 227 |
| MS.gene068350.t1 | MTR_5g096420 | 55.102 | 196 | 88 | 0 | 28 | 223 | 31 | 226 | 3.78e-75 | 227 |
| MS.gene068350.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 40 | 220 | 1 | 181 | 2.31e-72 | 218 |
| MS.gene068350.t1 | MTR_3g060730 | 54.891 | 184 | 83 | 0 | 40 | 223 | 5 | 188 | 3.85e-72 | 218 |
| MS.gene068350.t1 | MTR_8g099570 | 50.505 | 198 | 98 | 0 | 28 | 225 | 58 | 255 | 2.77e-71 | 218 |
| MS.gene068350.t1 | MTR_2g027500 | 52.880 | 191 | 90 | 0 | 33 | 223 | 34 | 224 | 5.76e-71 | 216 |
| MS.gene068350.t1 | MTR_1g016430 | 57.459 | 181 | 77 | 0 | 40 | 220 | 99 | 279 | 1.14e-70 | 217 |
| MS.gene068350.t1 | MTR_2g027440 | 52.688 | 186 | 88 | 0 | 37 | 222 | 43 | 228 | 5.82e-66 | 203 |
| MS.gene068350.t1 | MTR_3g091440 | 70.213 | 141 | 42 | 0 | 28 | 168 | 17 | 157 | 5.50e-65 | 199 |
| MS.gene068350.t1 | MTR_2g027480 | 52.151 | 186 | 89 | 0 | 37 | 222 | 43 | 228 | 2.60e-64 | 199 |
| MS.gene068350.t1 | MTR_2g027520 | 48.705 | 193 | 99 | 0 | 33 | 225 | 41 | 233 | 1.18e-62 | 195 |
| MS.gene068350.t1 | MTR_8g016170 | 52.151 | 186 | 89 | 0 | 33 | 218 | 66 | 251 | 2.01e-61 | 193 |
| MS.gene068350.t1 | MTR_5g013560 | 48.205 | 195 | 90 | 1 | 28 | 222 | 15 | 198 | 2.74e-59 | 186 |
| MS.gene068350.t1 | MTR_8g016170 | 53.488 | 172 | 80 | 0 | 33 | 204 | 47 | 218 | 1.01e-57 | 182 |
| MS.gene068350.t1 | MTR_4g113505 | 44.624 | 186 | 103 | 0 | 39 | 224 | 6 | 191 | 1.06e-54 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068350.t1 | AT5G24270 | 60.274 | 219 | 81 | 1 | 4 | 222 | 2 | 214 | 5.65e-93 | 272 |
| MS.gene068350.t1 | AT5G24270 | 60.274 | 219 | 81 | 1 | 4 | 222 | 2 | 214 | 5.65e-93 | 272 |
| MS.gene068350.t1 | AT5G24270 | 60.274 | 219 | 81 | 1 | 4 | 222 | 2 | 214 | 5.65e-93 | 272 |
| MS.gene068350.t1 | AT5G24270 | 63.978 | 186 | 67 | 0 | 37 | 222 | 4 | 189 | 2.49e-86 | 254 |
| MS.gene068350.t1 | AT1G64480 | 59.487 | 195 | 79 | 0 | 28 | 222 | 20 | 214 | 3.32e-78 | 234 |
| MS.gene068350.t1 | AT1G64480 | 59.487 | 195 | 79 | 0 | 28 | 222 | 20 | 214 | 3.32e-78 | 234 |
| MS.gene068350.t1 | AT1G64480 | 59.487 | 195 | 79 | 0 | 28 | 222 | 20 | 214 | 3.32e-78 | 234 |
| MS.gene068350.t1 | AT5G24270 | 63.975 | 161 | 58 | 0 | 62 | 222 | 7 | 167 | 6.73e-76 | 227 |
| MS.gene068350.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 28 | 222 | 16 | 210 | 2.96e-74 | 224 |
| MS.gene068350.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 28 | 222 | 16 | 210 | 2.96e-74 | 224 |
| MS.gene068350.t1 | AT4G17615 | 54.872 | 195 | 88 | 0 | 28 | 222 | 16 | 210 | 2.96e-74 | 224 |
| MS.gene068350.t1 | AT5G47100 | 55.789 | 190 | 84 | 0 | 33 | 222 | 21 | 210 | 4.84e-74 | 223 |
| MS.gene068350.t1 | AT4G26570 | 53.846 | 195 | 90 | 0 | 29 | 223 | 32 | 226 | 6.90e-74 | 223 |
| MS.gene068350.t1 | AT4G33000 | 57.216 | 194 | 83 | 0 | 29 | 222 | 53 | 246 | 7.59e-74 | 224 |
| MS.gene068350.t1 | AT4G33000 | 57.216 | 194 | 83 | 0 | 29 | 222 | 63 | 256 | 1.74e-73 | 224 |
| MS.gene068350.t1 | AT5G55990 | 53.846 | 195 | 90 | 0 | 29 | 223 | 32 | 226 | 2.17e-72 | 220 |
| MS.gene068350.t1 | AT5G55990 | 53.846 | 195 | 90 | 0 | 29 | 223 | 32 | 226 | 2.17e-72 | 220 |
| MS.gene068350.t1 | AT4G26570 | 52.764 | 199 | 90 | 1 | 29 | 223 | 32 | 230 | 1.49e-71 | 218 |
| MS.gene068350.t1 | AT1G64480 | 59.887 | 177 | 71 | 0 | 28 | 204 | 20 | 196 | 3.99e-70 | 213 |
| MS.gene068350.t1 | AT4G17615 | 55.249 | 181 | 81 | 0 | 28 | 208 | 16 | 196 | 7.29e-67 | 206 |
| MS.gene068350.t1 | AT4G01420 | 47.739 | 199 | 104 | 0 | 17 | 215 | 4 | 202 | 7.77e-62 | 192 |
| MS.gene068350.t1 | AT4G16350 | 50.259 | 193 | 92 | 1 | 33 | 225 | 34 | 222 | 5.04e-61 | 191 |
| MS.gene068350.t1 | AT4G16350 | 50.259 | 193 | 92 | 1 | 33 | 225 | 34 | 222 | 5.04e-61 | 191 |
| MS.gene068350.t1 | AT4G17615 | 54.777 | 157 | 71 | 0 | 66 | 222 | 12 | 168 | 7.14e-61 | 189 |
| MS.gene068350.t1 | AT4G01420 | 49.718 | 177 | 89 | 0 | 28 | 204 | 15 | 191 | 5.56e-58 | 182 |
| MS.gene068350.t1 | AT4G26560 | 45.789 | 190 | 90 | 1 | 47 | 223 | 25 | 214 | 1.84e-55 | 176 |
| MS.gene068350.t1 | AT5G47100 | 52.899 | 138 | 65 | 0 | 33 | 170 | 21 | 158 | 5.11e-49 | 158 |
| MS.gene068350.t1 | AT4G33000 | 54.861 | 144 | 65 | 0 | 29 | 172 | 53 | 196 | 2.96e-47 | 155 |
| MS.gene068350.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 29 | 168 | 53 | 192 | 3.58e-47 | 154 |
| MS.gene068350.t1 | AT4G33000 | 55.714 | 140 | 62 | 0 | 29 | 168 | 53 | 192 | 3.58e-47 | 154 |
| MS.gene068350.t1 | AT4G33000 | 54.348 | 92 | 42 | 0 | 29 | 120 | 53 | 144 | 1.16e-24 | 95.5 |
Find 32 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTGCTTGAGGAGCTTT+AGG | 0.234896 | 8.3:-66591774 | None:intergenic |
| GGATATGGTGTTGATGATTT+TGG | 0.239699 | 8.3:+66592128 | MS.gene068350:CDS |
| CTTCAGAACAAGAATTATTA+AGG | 0.292998 | 8.3:-66590649 | None:intergenic |
| TTCTGCGCTCAGCATAAAAC+TGG | 0.328781 | 8.3:-66592523 | None:intergenic |
| TAAATTCGCCAAACTCTATA+TGG | 0.330475 | 8.3:-66591728 | None:intergenic |
| GGCGAATTTATCAGATCTTT+AGG | 0.334304 | 8.3:+66591741 | MS.gene068350:CDS |
| AAATTTACAGTTGAAGGATA+TGG | 0.376424 | 8.3:+66592113 | MS.gene068350:intron |
| CACAACGGCCATATAGAGTT+TGG | 0.395021 | 8.3:+66591720 | MS.gene068350:CDS |
| AAACTACGATTGTGATTCTT+CGG | 0.429750 | 8.3:-66592547 | None:intergenic |
| GTCATGTTCTTGAGTAATGA+TGG | 0.435791 | 8.3:-66592378 | None:intergenic |
| AAACAAACGCAACCTCTTTG+TGG | 0.437485 | 8.3:+66591551 | MS.gene068350:CDS |
| CTTATCTTTGCCAACTTCAC+AGG | 0.446985 | 8.3:-66590597 | None:intergenic |
| TTATATGACTTGAGGCATAC+AGG | 0.464058 | 8.3:+66591991 | MS.gene068350:CDS |
| TTTAAAACTTACATTAGATA+AGG | 0.469690 | 8.3:-66592405 | None:intergenic |
| GAAGAATGGAGTGAATATGT+TGG | 0.482908 | 8.3:+66592348 | MS.gene068350:CDS |
| GAGAGAGGTGGAAATCTTGA+AGG | 0.495718 | 8.3:+66591304 | MS.gene068350:CDS |
| ACGCAACCTCTTTGTGGATA+GGG | 0.528181 | 8.3:+66591557 | MS.gene068350:CDS |
| GTAGCAGAAAATATTATGGA+TGG | 0.537395 | 8.3:+66590572 | None:intergenic |
| ATGGATGGATCCTGTGAAGT+TGG | 0.558937 | 8.3:+66590587 | MS.gene068350:CDS |
| CGTTTAGATTATATGACTTG+AGG | 0.559102 | 8.3:+66591983 | MS.gene068350:CDS |
| TTTGGTTCTATCTGATGATG+TGG | 0.562282 | 8.3:+66592161 | MS.gene068350:CDS |
| AACGCAACCTCTTTGTGGAT+AGG | 0.564160 | 8.3:+66591556 | MS.gene068350:CDS |
| CCTAGCAGTTACTGTGAGAG+AGG | 0.600150 | 8.3:+66591289 | MS.gene068350:intron |
| TACATGGTGTCTCAGAAGCA+AGG | 0.611094 | 8.3:-66590682 | None:intergenic |
| GGTTGAAACAATTGTGGACA+AGG | 0.615162 | 8.3:+66592182 | MS.gene068350:CDS |
| GAAACAGACACGAAAGGTGA+CGG | 0.615254 | 8.3:+66592312 | MS.gene068350:CDS |
| TGCATACCCTATCCACAAAG+AGG | 0.624228 | 8.3:-66591563 | None:intergenic |
| TGATGTGGTTGAAACAATTG+TGG | 0.635953 | 8.3:+66592176 | MS.gene068350:CDS |
| AGCAGTTACTGTGAGAGAGG+TGG | 0.654761 | 8.3:+66591292 | MS.gene068350:intron |
| TCTGCGCTCAGCATAAAACT+GGG | 0.668163 | 8.3:-66592522 | None:intergenic |
| TTTCTAGAAACAGACACGAA+AGG | 0.669410 | 8.3:+66592306 | MS.gene068350:CDS |
| AGGTTACATTGAGCGCGAAG+AGG | 0.670430 | 8.3:+66592011 | MS.gene068350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATATATATATATTTT+GGG | + | chr8.3:66592268-66592287 | MS.gene068350:intron | 0.0% |
| !!! | TTATATATATATATATATTT+TGG | + | chr8.3:66592267-66592286 | MS.gene068350:intron | 0.0% |
| !!! | TATATATATATATATTTTGG+GGG | + | chr8.3:66592270-66592289 | MS.gene068350:intron | 10.0% |
| !! | AACAAAAAAAAAACATGAAA+AGG | - | chr8.3:66590722-66590741 | None:intergenic | 15.0% |
| !! | AATTAGTTATTGCTTAAAAA+AGG | + | chr8.3:66590898-66590917 | MS.gene068350:intron | 15.0% |
| !! | ATTAGTTATTGCTTAAAAAA+GGG | + | chr8.3:66590899-66590918 | MS.gene068350:intron | 15.0% |
| !! | CTTATAATCTGTAAAATTAT+AGG | + | chr8.3:66590780-66590799 | MS.gene068350:intron | 15.0% |
| !!! | ATATATATATATATTTTGGG+GGG | + | chr8.3:66592271-66592290 | MS.gene068350:intron | 15.0% |
| !!! | TTTAAAACTTACATTAGATA+AGG | - | chr8.3:66592408-66592427 | None:intergenic | 15.0% |
| !! | TAATGAAAATTTACAGTTGA+AGG | + | chr8.3:66592107-66592126 | MS.gene068350:intron | 20.0% |
| !! | TAGCTTATAAAAACAGATTA+TGG | + | chr8.3:66591054-66591073 | MS.gene068350:intron | 20.0% |
| !! | TTAGTTATTGCTTAAAAAAG+GGG | + | chr8.3:66590900-66590919 | MS.gene068350:intron | 20.0% |
| !!! | AATATACTACTTTGATTTAG+TGG | + | chr8.3:66590844-66590863 | MS.gene068350:intron | 20.0% |
| !!! | ACTTTTTGATTCTAATTTCA+GGG | + | chr8.3:66592482-66592501 | MS.gene068350:intron | 20.0% |
| !!! | TGACAATTGTTTTAATGTTT+TGG | + | chr8.3:66592081-66592100 | MS.gene068350:intron | 20.0% |
| ! | AAATTTACAGTTGAAGGATA+TGG | + | chr8.3:66592113-66592132 | MS.gene068350:intron | 25.0% |
| ! | ACGTGATTTAGATAATTTCA+TGG | + | chr8.3:66590808-66590827 | MS.gene068350:intron | 25.0% |
| ! | CATAAATTAAAACACACAAG+TGG | - | chr8.3:66591218-66591237 | None:intergenic | 25.0% |
| ! | CTTCAGAACAAGAATTATTA+AGG | - | chr8.3:66590652-66590671 | None:intergenic | 25.0% |
| ! | TGTGTATTGTGTATATTAAC+AGG | + | chr8.3:66591497-66591516 | MS.gene068350:intron | 25.0% |
| !! | AAATAAGTTTAAAATGCTCG+CGG | - | chr8.3:66591017-66591036 | None:intergenic | 25.0% |
| !! | GAAAAATGGACTTATTCAAA+AGG | + | chr8.3:66591358-66591377 | MS.gene068350:CDS | 25.0% |
| !! | GAAAAATTGACTTAGAAGAA+TGG | + | chr8.3:66592334-66592353 | MS.gene068350:CDS | 25.0% |
| !! | TCATTTTCTTTTACTTCTGA+AGG | - | chr8.3:66590629-66590648 | None:intergenic | 25.0% |
| !!! | ATGTTTTTTTTTTGTTGCCT+TGG | + | chr8.3:66590726-66590745 | MS.gene068350:intron | 25.0% |
| !!! | CACTTTTTGATTCTAATTTC+AGG | + | chr8.3:66592481-66592500 | MS.gene068350:intron | 25.0% |
| !!! | CTTATTTTCATAAGTTCTAC+AGG | + | chr8.3:66591030-66591049 | MS.gene068350:intron | 25.0% |
| ATAATCACTTCTGCTACAAT+CGG | + | chr8.3:66591148-66591167 | MS.gene068350:intron | 30.0% | |
| ATTAAAACACACAAGTGGAA+AGG | - | chr8.3:66591213-66591232 | None:intergenic | 30.0% | |
| CGTTTAGATTATATGACTTG+AGG | + | chr8.3:66591983-66592002 | MS.gene068350:CDS | 30.0% | |
| GTACACTATTCATATGCAAT+TGG | - | chr8.3:66591244-66591263 | None:intergenic | 30.0% | |
| TAAATTCGCCAAACTCTATA+TGG | - | chr8.3:66591731-66591750 | None:intergenic | 30.0% | |
| TCTATCCTATGAAAAGACTA+CGG | - | chr8.3:66592046-66592065 | None:intergenic | 30.0% | |
| TGCACAGTTATTGTGAAAAA+TGG | + | chr8.3:66591344-66591363 | MS.gene068350:CDS | 30.0% | |
| ! | AGTCTTTTCATAGGATAGAT+TGG | + | chr8.3:66592047-66592066 | MS.gene068350:intron | 30.0% |
| ! | CAAGACAATTTAACTTTCCA+AGG | - | chr8.3:66590746-66590765 | None:intergenic | 30.0% |
| ! | CTGCGAAGAATAATTTTACA+TGG | - | chr8.3:66591960-66591979 | None:intergenic | 30.0% |
| !!! | CATTTTATTTTGTCTGCTTG+AGG | - | chr8.3:66591786-66591805 | None:intergenic | 30.0% |
| !!! | GATTTTGGTTGAATCTGATT+TGG | + | chr8.3:66592143-66592162 | MS.gene068350:CDS | 30.0% |
| AATCCAAAAAGCCCTTAAGA+TGG | - | chr8.3:66590940-66590959 | None:intergenic | 35.0% | |
| ACTTGAATCTCTTGTTCGAT+TGG | + | chr8.3:66591412-66591431 | MS.gene068350:intron | 35.0% | |
| ATCCAAACAGAACCTGAAAT+TGG | + | chr8.3:66591185-66591204 | MS.gene068350:intron | 35.0% | |
| CATAGTGCATACCATCTTAA+GGG | + | chr8.3:66590926-66590945 | MS.gene068350:intron | 35.0% | |
| CTATCCTATGAAAAGACTAC+GGG | - | chr8.3:66592045-66592064 | None:intergenic | 35.0% | |
| CTGTGTCATAATGCAATGAA+TGG | - | chr8.3:66592449-66592468 | None:intergenic | 35.0% | |
| GAAAAGATCAAACATCTGCA+TGG | - | chr8.3:66591691-66591710 | None:intergenic | 35.0% | |
| GAAGAATGGAGTGAATATGT+TGG | + | chr8.3:66592348-66592367 | MS.gene068350:CDS | 35.0% | |
| GGAAGCTTTCTTTACTTACA+TGG | - | chr8.3:66590701-66590720 | None:intergenic | 35.0% | |
| GGCGAATTTATCAGATCTTT+AGG | + | chr8.3:66591741-66591760 | MS.gene068350:CDS | 35.0% | |
| GTCATGTTCTTGAGTAATGA+TGG | - | chr8.3:66592381-66592400 | None:intergenic | 35.0% | |
| TGATGTGGTTGAAACAATTG+TGG | + | chr8.3:66592176-66592195 | MS.gene068350:CDS | 35.0% | |
| TGTATATACGATCAACATCC+TGG | - | chr8.3:66591860-66591879 | None:intergenic | 35.0% | |
| TTATATGACTTGAGGCATAC+AGG | + | chr8.3:66591991-66592010 | MS.gene068350:CDS | 35.0% | |
| ! | ATACCATCTTAAGGGCTTTT+TGG | + | chr8.3:66590934-66590953 | MS.gene068350:intron | 35.0% |
| ! | CTTTTCGATGTCAATCACAA+CGG | + | chr8.3:66591705-66591724 | MS.gene068350:CDS | 35.0% |
| ! | TTTCTAGAAACAGACACGAA+AGG | + | chr8.3:66592306-66592325 | MS.gene068350:CDS | 35.0% |
| ! | TTTGGATTGACTTCTACACT+TGG | + | chr8.3:66590952-66590971 | MS.gene068350:intron | 35.0% |
| !! | AACCAATTTCAGGTTCTGTT+TGG | - | chr8.3:66591190-66591209 | None:intergenic | 35.0% |
| !! | TTTGGTTCTATCTGATGATG+TGG | + | chr8.3:66592161-66592180 | MS.gene068350:CDS | 35.0% |
| !!! | GGATATGGTGTTGATGATTT+TGG | + | chr8.3:66592128-66592147 | MS.gene068350:CDS | 35.0% |
| AAACAAACGCAACCTCTTTG+TGG | + | chr8.3:66591551-66591570 | MS.gene068350:CDS | 40.0% | |
| AGTCGTTTGTTTACCATTCC+AGG | + | chr8.3:66591839-66591858 | MS.gene068350:intron | 40.0% | |
| AGTGGAAAGGAACCAATTTC+AGG | - | chr8.3:66591200-66591219 | None:intergenic | 40.0% | |
| ATACGATCAACATCCTGGAA+TGG | - | chr8.3:66591855-66591874 | None:intergenic | 40.0% | |
| CTTATCTTTGCCAACTTCAC+AGG | - | chr8.3:66590600-66590619 | None:intergenic | 40.0% | |
| GCATAGTGCATACCATCTTA+AGG | + | chr8.3:66590925-66590944 | MS.gene068350:intron | 40.0% | |
| GGTTGAAACAATTGTGGACA+AGG | + | chr8.3:66592182-66592201 | MS.gene068350:CDS | 40.0% | |
| ! | TACTCCCGTAGTCTTTTCAT+AGG | + | chr8.3:66592038-66592057 | MS.gene068350:intron | 40.0% |
| AACGCAACCTCTTTGTGGAT+AGG | + | chr8.3:66591556-66591575 | MS.gene068350:CDS | 45.0% | |
| ACGCAACCTCTTTGTGGATA+GGG | + | chr8.3:66591557-66591576 | MS.gene068350:CDS | 45.0% | |
| ATGGATGGATCCTGTGAAGT+TGG | + | chr8.3:66590587-66590606 | MS.gene068350:CDS | 45.0% | |
| CACAACGGCCATATAGAGTT+TGG | + | chr8.3:66591720-66591739 | MS.gene068350:CDS | 45.0% | |
| GAAACAGACACGAAAGGTGA+CGG | + | chr8.3:66592312-66592331 | MS.gene068350:CDS | 45.0% | |
| GAGAGAGGTGGAAATCTTGA+AGG | + | chr8.3:66591304-66591323 | MS.gene068350:CDS | 45.0% | |
| TACATGGTGTCTCAGAAGCA+AGG | - | chr8.3:66590685-66590704 | None:intergenic | 45.0% | |
| TCTGCGCTCAGCATAAAACT+GGG | - | chr8.3:66592525-66592544 | None:intergenic | 45.0% | |
| TGCATACCCTATCCACAAAG+AGG | - | chr8.3:66591566-66591585 | None:intergenic | 45.0% | |
| TTCTGCGCTCAGCATAAAAC+TGG | - | chr8.3:66592526-66592545 | None:intergenic | 45.0% | |
| TTGTCTGCTTGAGGAGCTTT+AGG | - | chr8.3:66591777-66591796 | None:intergenic | 45.0% | |
| !!! | ATATATATATATATATTTTG+GGG | + | chr8.3:66592269-66592288 | MS.gene068350:intron | 5.0% |
| AGCAGTTACTGTGAGAGAGG+TGG | + | chr8.3:66591292-66591311 | MS.gene068350:intron | 50.0% | |
| AGGTTACATTGAGCGCGAAG+AGG | + | chr8.3:66592011-66592030 | MS.gene068350:CDS | 50.0% | |
| CCTAGCAGTTACTGTGAGAG+AGG | + | chr8.3:66591289-66591308 | MS.gene068350:intron | 50.0% | |
| CCTCTCTCACAGTAACTGCT+AGG | - | chr8.3:66591292-66591311 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 66590587 | 66592566 | 66590587 | ID=MS.gene068350 |
| chr8.3 | mRNA | 66590587 | 66592566 | 66590587 | ID=MS.gene068350.t1;Parent=MS.gene068350 |
| chr8.3 | exon | 66590587 | 66590701 | 66590587 | ID=MS.gene068350.t1.exon1;Parent=MS.gene068350.t1 |
| chr8.3 | CDS | 66590587 | 66590701 | 66590587 | ID=cds.MS.gene068350.t1;Parent=MS.gene068350.t1 |
| chr8.3 | exon | 66591297 | 66591379 | 66591297 | ID=MS.gene068350.t1.exon2;Parent=MS.gene068350.t1 |
| chr8.3 | CDS | 66591297 | 66591379 | 66591297 | ID=cds.MS.gene068350.t1;Parent=MS.gene068350.t1 |
| chr8.3 | exon | 66591519 | 66591578 | 66591519 | ID=MS.gene068350.t1.exon3;Parent=MS.gene068350.t1 |
| chr8.3 | CDS | 66591519 | 66591578 | 66591519 | ID=cds.MS.gene068350.t1;Parent=MS.gene068350.t1 |
| chr8.3 | exon | 66591696 | 66591804 | 66591696 | ID=MS.gene068350.t1.exon4;Parent=MS.gene068350.t1 |
| chr8.3 | CDS | 66591696 | 66591804 | 66591696 | ID=cds.MS.gene068350.t1;Parent=MS.gene068350.t1 |
| chr8.3 | exon | 66591980 | 66592032 | 66591980 | ID=MS.gene068350.t1.exon5;Parent=MS.gene068350.t1 |
| chr8.3 | CDS | 66591980 | 66592032 | 66591980 | ID=cds.MS.gene068350.t1;Parent=MS.gene068350.t1 |
| chr8.3 | exon | 66592123 | 66592203 | 66592123 | ID=MS.gene068350.t1.exon6;Parent=MS.gene068350.t1 |
| chr8.3 | CDS | 66592123 | 66592203 | 66592123 | ID=cds.MS.gene068350.t1;Parent=MS.gene068350.t1 |
| chr8.3 | exon | 66592303 | 66592415 | 66592303 | ID=MS.gene068350.t1.exon7;Parent=MS.gene068350.t1 |
| chr8.3 | CDS | 66592303 | 66592415 | 66592303 | ID=cds.MS.gene068350.t1;Parent=MS.gene068350.t1 |
| chr8.3 | exon | 66592503 | 66592566 | 66592503 | ID=MS.gene068350.t1.exon8;Parent=MS.gene068350.t1 |
| chr8.3 | CDS | 66592503 | 66592566 | 66592503 | ID=cds.MS.gene068350.t1;Parent=MS.gene068350.t1 |
| Gene Sequence |
| Protein sequence |
