AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49365


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49365.t1 MTR_1g071110 97.695 347 8 0 1 347 1 347 0.0 706
MS.gene49365.t1 MTR_1g076570 76.286 350 70 3 1 347 1 340 0.0 520
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49365.t1 AT3G63410 78.797 349 61 5 1 347 1 338 0.0 518

Find 85 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAACTCCACGATACCATTT+TGG 0.111746 1.1:-53508942 None:intergenic
AACCAAACCCATTTCCATTT+TGG 0.136694 1.1:-53507624 None:intergenic
TCGATATACTCTTCTTCTTT+AGG 0.193738 1.1:-53508870 None:intergenic
TCGCCGTCATGGCTTGATTA+TGG 0.203458 1.1:+53508962 MS.gene49365:CDS
GTTTACGAAGGCAGGGTTTA+AGG 0.206012 1.1:+53508896 MS.gene49365:CDS
CAAGTATCAATGCTAAAATT+AGG 0.216380 1.1:+53507692 MS.gene49365:CDS
CGATATACTCTTCTTCTTTA+GGG 0.222755 1.1:-53508869 None:intergenic
CTCTCAGATTGGCTGATCTT+TGG 0.227283 1.1:-53510461 None:intergenic
TACAATGTTTCTCTTCAAAT+TGG 0.240007 1.1:-53507719 None:intergenic
GTCCTGTCTACCCGACATTT+TGG 0.244718 1.1:+53508811 MS.gene49365:CDS
TTGAATTGCAAAACCCAAAA+TGG 0.251263 1.1:+53507610 MS.gene49365:CDS
CGCCGTCATGGCTTGATTAT+GGG 0.259408 1.1:+53508963 MS.gene49365:CDS
ATCTGGGGATTCTCCTTTGC+AGG 0.267355 1.1:+53509013 MS.gene49365:CDS
CGCGTTTCTTCGCAGATGTT+TGG 0.268470 1.1:+53508838 MS.gene49365:CDS
TTAAGGATGTCCAGCTAAAA+AGG 0.270534 1.1:+53508913 MS.gene49365:CDS
TCTCAGATTGGCTGATCTTT+GGG 0.280706 1.1:-53510460 None:intergenic
AAGAAGACAAAGGGATTTAC+AGG 0.286308 1.1:-53510355 None:intergenic
TTCTTACTGCGCTTTGCCTT+GGG 0.316900 1.1:+53510373 MS.gene49365:CDS
TCTTTGAGCCACATGTAAAT+AGG 0.317118 1.1:-53510427 None:intergenic
CTTCTTACTGCGCTTTGCCT+TGG 0.324170 1.1:+53510372 MS.gene49365:CDS
TGCAAAACCCAAAATGGAAA+TGG 0.342940 1.1:+53507616 MS.gene49365:CDS
GTTGATGTTGGTGGTGGTAC+TGG 0.349346 1.1:+53507940 MS.gene49365:CDS
AAGTATCAATGCTAAAATTA+GGG 0.352482 1.1:+53507693 MS.gene49365:CDS
ACTGGTGTTAAGCCTGCATC+TGG 0.356332 1.1:+53508996 MS.gene49365:CDS
ACCCAAAATGGAAATGGGTT+TGG 0.363731 1.1:+53507622 MS.gene49365:CDS
TGTTTCTCAGCATTGAATAC+TGG 0.398556 1.1:+53508718 MS.gene49365:intron
GGTACTGGTTTCACTACATT+GGG 0.400200 1.1:+53507955 MS.gene49365:CDS
AAGGATTGTAAAATTGTTGA+AGG 0.409383 1.1:+53508066 MS.gene49365:CDS
AAAGCAAAAGGAACCACTTA+AGG 0.411490 1.1:+53508047 MS.gene49365:CDS
AATATGCTTGTTGTTGATGT+TGG 0.423767 1.1:+53507928 MS.gene49365:CDS
ATAAACCTAGGTTGTGAACT+TGG 0.425109 1.1:-53507775 None:intergenic
ATCGAGTGGTTTACGAAGGC+AGG 0.431658 1.1:+53508888 MS.gene49365:CDS
ATTATGGGTTGTTCTGTGAC+TGG 0.435412 1.1:+53508978 MS.gene49365:CDS
TTGATGCCACGCTGTGGATC+CGG 0.441360 1.1:-53508741 None:intergenic
GCAAAACCCAAAATGGAAAT+GGG 0.445634 1.1:+53507617 MS.gene49365:CDS
ATGTTATAAACCCTGGTCAT+TGG 0.460038 1.1:+53507854 MS.gene49365:CDS
ATGCTTGTTGTTGATGTTGG+TGG 0.461058 1.1:+53507931 MS.gene49365:CDS
GGAAATGGGTTTGGTTTCAC+AGG 0.462226 1.1:+53507631 MS.gene49365:CDS
AACCAAAATGTCGGGTAGAC+AGG 0.473847 1.1:-53508813 None:intergenic
TGGGCGTCCTAGCAGCTTCG+TGG 0.475392 1.1:+53510392 MS.gene49365:CDS
TTCCTATCAGTAAGTTCAGC+TGG 0.478104 1.1:-53507907 None:intergenic
TGGTACTGGTTTCACTACAT+TGG 0.488035 1.1:+53507954 MS.gene49365:CDS
AGGATTGTAAAATTGTTGAA+GGG 0.496213 1.1:+53508067 MS.gene49365:CDS
GTGGCATCAAGGAAGCATAC+AGG 0.498940 1.1:+53508754 MS.gene49365:CDS
TTCACAGGTTCAGATTTCAA+TGG 0.502460 1.1:+53507646 MS.gene49365:CDS
CCTACAAATCTCTCTCAGAT+TGG 0.504843 1.1:-53510472 None:intergenic
CTTGTTGTTGATGTTGGTGG+TGG 0.511570 1.1:+53507934 MS.gene49365:CDS
AACCAGCTGAACTTACTGAT+AGG 0.522090 1.1:+53507905 MS.gene49365:CDS
TTTGCTGCAGCTTGGTCCAA+AGG 0.523778 1.1:+53510315 MS.gene49365:intron
CTGGTGTTAAGCCTGCATCT+GGG 0.528996 1.1:+53508997 MS.gene49365:CDS
AACGCGACAACCAAAATGTC+GGG 0.531908 1.1:-53508821 None:intergenic
GCTTGCTAAAGCAAAGCAAA+AGG 0.534201 1.1:+53508035 MS.gene49365:CDS
TATTGATTCCTATTTACATG+TGG 0.537530 1.1:+53510419 MS.gene49365:CDS
AAAGGAGAATCCCCAGATGC+AGG 0.539061 1.1:-53509008 None:intergenic
GGATCCACAGCGTGGCATCA+AGG 0.541356 1.1:+53508743 MS.gene49365:CDS
CAAGACCAAGTTCACAACCT+AGG 0.556920 1.1:+53507770 MS.gene49365:CDS
TATCGTGGAGTTCGCCGTCA+TGG 0.558525 1.1:+53508951 MS.gene49365:CDS
GGATTGTAAAATTGTTGAAG+GGG 0.558559 1.1:+53508068 MS.gene49365:CDS
AAGCGCAGTAAGAAGACAAA+GGG 0.559888 1.1:-53510364 None:intergenic
TGGTGTTAAGCCTGCATCTG+GGG 0.564309 1.1:+53508998 MS.gene49365:CDS
ATACAAACCACGAAGCTGCT+AGG 0.565899 1.1:-53510399 None:intergenic
ATATCTTCAGTCCAATGACC+AGG 0.572070 1.1:-53507865 None:intergenic
TCTCAGCATTGAATACTGGC+CGG 0.576769 1.1:+53508722 MS.gene49365:intron
AAGATGACAAATACCTGCAA+AGG 0.577073 1.1:-53509026 None:intergenic
GCTGATAGATATGTGTCCGC+TGG 0.579059 1.1:+53508123 MS.gene49365:CDS
TCAGCATAATCAGTTCGAAA+GGG 0.581535 1.1:-53508105 None:intergenic
ATCAGCATAATCAGTTCGAA+AGG 0.586784 1.1:-53508106 None:intergenic
TCGAGTGGTTTACGAAGGCA+GGG 0.588098 1.1:+53508889 MS.gene49365:CDS
TTTGCTTTAGCAAGCTGATG+AGG 0.594550 1.1:-53508027 None:intergenic
ATAGATATGTGTCCGCTGGA+AGG 0.594629 1.1:+53508127 MS.gene49365:CDS
TGGCATCAAGGAAGCATACA+GGG 0.598551 1.1:+53508755 MS.gene49365:CDS
AAAGCGCAGTAAGAAGACAA+AGG 0.601046 1.1:-53510365 None:intergenic
CGAAGCTGCTAGGACGCCCA+AGG 0.601692 1.1:-53510389 None:intergenic
AACCCATAATCAAGCCATGA+CGG 0.615385 1.1:-53508965 None:intergenic
AAACGCGACAACCAAAATGT+CGG 0.616259 1.1:-53508822 None:intergenic
GCTTCCTTGATGCCACGCTG+TGG 0.644008 1.1:-53508747 None:intergenic
TATCTTCAGTCCAATGACCA+GGG 0.655879 1.1:-53507864 None:intergenic
AATGACCAGGGTTTATAACA+TGG 0.658874 1.1:-53507852 None:intergenic
ATTGGCCCAAAATGGTATCG+TGG 0.672762 1.1:+53508936 MS.gene49365:CDS
GTATATCGAGTGGTTTACGA+AGG 0.686187 1.1:+53508884 MS.gene49365:CDS
ATGGCTTCACTAATGCTCAG+TGG 0.694171 1.1:+53507568 MS.gene49365:CDS
TATGACCATGTTATAAACCC+TGG 0.696580 1.1:+53507847 MS.gene49365:CDS
TACTGGCCGGATCCACAGCG+TGG 0.700858 1.1:+53508735 MS.gene49365:CDS
AAGAAGAAGAGTATATCGAG+TGG 0.708626 1.1:+53508874 MS.gene49365:CDS
GACATCGATATACCTTCCAG+CGG 0.718494 1.1:-53508139 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTATTTTCAATTG+CGG + chr1.1:53509955-53509974 MS.gene49365:intron 10.0%
!! ATAAAATTAAAAAACATACC+TGG - chr1.1:53509946-53509965 None:intergenic 15.0%
!!! GCTTAGTTTTTTTTTTTTTT+TGG + chr1.1:53508516-53508535 MS.gene49365:intron 15.0%
!!! TTAATTTTATTTTCAATTGC+GGG + chr1.1:53509956-53509975 MS.gene49365:intron 15.0%
!! AACCATGCATAATTATTTAA+AGG - chr1.1:53508196-53508215 None:intergenic 20.0%
!! AAGTATCAATGCTAAAATTA+GGG + chr1.1:53507693-53507712 MS.gene49365:CDS 20.0%
!! AAGTTTAACCATATTAAATG+TGG + chr1.1:53509699-53509718 MS.gene49365:intron 20.0%
!! ATCATGTTTGATATTTAAGT+TGG + chr1.1:53509739-53509758 MS.gene49365:intron 20.0%
!! ATTTGATTAAGCATAAAAGA+AGG - chr1.1:53509083-53509102 None:intergenic 20.0%
!! CTATAACAAGAGAAAAATAA+AGG - chr1.1:53508417-53508436 None:intergenic 20.0%
!! GAATAATAGATAGAAAAAAG+AGG - chr1.1:53509423-53509442 None:intergenic 20.0%
!! TGATTTATTATTGTTAAGTG+TGG + chr1.1:53509840-53509859 MS.gene49365:intron 20.0%
!! TTTATGCTTAATCAAATCAA+AGG + chr1.1:53509086-53509105 MS.gene49365:intron 20.0%
!! TTTGATTAAGCATAAAAGAA+GGG - chr1.1:53509082-53509101 None:intergenic 20.0%
!!! ATTTTTACATGAAATGACTA+TGG + chr1.1:53509558-53509577 MS.gene49365:intron 20.0%
!!! GAATATAGAGATTTTGATTT+AGG - chr1.1:53510131-53510150 None:intergenic 20.0%
! AAGGATTGTAAAATTGTTGA+AGG + chr1.1:53508066-53508085 MS.gene49365:CDS 25.0%
! AAGTGTACATAGATATAAAG+TGG + chr1.1:53508580-53508599 MS.gene49365:intron 25.0%
! AGGATTGTAAAATTGTTGAA+GGG + chr1.1:53508067-53508086 MS.gene49365:CDS 25.0%
! ATCAGTAAGCATATAGATAT+AGG - chr1.1:53509540-53509559 None:intergenic 25.0%
! CAAGTATCAATGCTAAAATT+AGG + chr1.1:53507692-53507711 MS.gene49365:CDS 25.0%
! CATAAACACTATATGCTTTA+CGG + chr1.1:53509203-53509222 MS.gene49365:intron 25.0%
! GAAAAAAGAGGTAAACTTAA+AGG - chr1.1:53509411-53509430 None:intergenic 25.0%
! GTTGATATCAATGTAGATAT+GGG + chr1.1:53509919-53509938 MS.gene49365:intron 25.0%
! TACAATGTTTCTCTTCAAAT+TGG - chr1.1:53507722-53507741 None:intergenic 25.0%
! TCAGTAAGCATATAGATATA+GGG - chr1.1:53509539-53509558 None:intergenic 25.0%
!! AATCAAAGGTATGTTGTATA+AGG + chr1.1:53509100-53509119 MS.gene49365:intron 25.0%
!! ACAATTTTACAATCCTTAAG+TGG - chr1.1:53508063-53508082 None:intergenic 25.0%
!! AGTTGATATCAATGTAGATA+TGG + chr1.1:53509918-53509937 MS.gene49365:intron 25.0%
!! TTTTTGTGTTGTATAAACCT+AGG - chr1.1:53507790-53507809 None:intergenic 25.0%
!!! AACACAAAAAAGAAGCATTT+TGG + chr1.1:53507800-53507819 MS.gene49365:CDS 25.0%
!!! AAGAAGCATTTTGGTTTTAT+AGG + chr1.1:53507809-53507828 MS.gene49365:CDS 25.0%
!!! ATGTTTGATATTTAAGTTGG+AGG + chr1.1:53509742-53509761 MS.gene49365:intron 25.0%
!!! TAGCATTGATACTTGTTTTT+GGG - chr1.1:53507687-53507706 None:intergenic 25.0%
!!! TATTGATTCCTATTTACATG+TGG + chr1.1:53510419-53510438 MS.gene49365:CDS 25.0%
!!! TTAGCATTGATACTTGTTTT+TGG - chr1.1:53507688-53507707 None:intergenic 25.0%
AAAGAGGTAAACTTAAAGGA+TGG - chr1.1:53509407-53509426 None:intergenic 30.0%
AAGAGGTAAACTTAAAGGAT+GGG - chr1.1:53509406-53509425 None:intergenic 30.0%
ACATAAGGATTACAATTGGT+AGG - chr1.1:53510016-53510035 None:intergenic 30.0%
ATCAAACATGATCACTTCAA+TGG - chr1.1:53509731-53509750 None:intergenic 30.0%
ATTCAGCTTAACAAAGCTAT+AGG + chr1.1:53510147-53510166 MS.gene49365:intron 30.0%
CAAGACATAAGGATTACAAT+TGG - chr1.1:53510020-53510039 None:intergenic 30.0%
CAATTGTAATCCTTATGTCT+TGG + chr1.1:53510018-53510037 MS.gene49365:intron 30.0%
CATAAGGATTACAATTGGTA+GGG - chr1.1:53510015-53510034 None:intergenic 30.0%
CCAACAAAAAAACATGTACA+GGG - chr1.1:53509491-53509510 None:intergenic 30.0%
CGATATACTCTTCTTCTTTA+GGG - chr1.1:53508872-53508891 None:intergenic 30.0%
CGCCTTTAAATAATTATGCA+TGG + chr1.1:53508191-53508210 MS.gene49365:intron 30.0%
CGTAAAGCATATAGTGTTTA+TGG - chr1.1:53509205-53509224 None:intergenic 30.0%
GAGTTATGAACAAAACACTA+CGG + chr1.1:53510057-53510076 MS.gene49365:intron 30.0%
GGAAGTTTCCACATTTAATA+TGG - chr1.1:53509710-53509729 None:intergenic 30.0%
GGATTGTAAAATTGTTGAAG+GGG + chr1.1:53508068-53508087 MS.gene49365:CDS 30.0%
TAACAAAGCTATAGGATTTG+AGG + chr1.1:53510155-53510174 MS.gene49365:intron 30.0%
TCAAATAAGCCAATCCAAAT+AGG - chr1.1:53508276-53508295 None:intergenic 30.0%
TCCAACAAAAAAACATGTAC+AGG - chr1.1:53509492-53509511 None:intergenic 30.0%
TCGATATACTCTTCTTCTTT+AGG - chr1.1:53508873-53508892 None:intergenic 30.0%
TTGAAATAGTCATCAGTTGA+GGG - chr1.1:53509256-53509275 None:intergenic 30.0%
TTGAATTGCAAAACCCAAAA+TGG + chr1.1:53507610-53507629 MS.gene49365:CDS 30.0%
! TGTTTTCGTATAAGCTATCT+TGG - chr1.1:53508389-53508408 None:intergenic 30.0%
! TTTGAAATAGTCATCAGTTG+AGG - chr1.1:53509257-53509276 None:intergenic 30.0%
! TTTTCAACATCTTCTTCCTT+TGG - chr1.1:53510334-53510353 None:intergenic 30.0%
!! AAAGTAGATTGCTTTGAAAG+AGG + chr1.1:53508676-53508695 MS.gene49365:intron 30.0%
!! AATATGCTTGTTGTTGATGT+TGG + chr1.1:53507928-53507947 MS.gene49365:CDS 30.0%
!! TATAAGGTTGTTTCTCCTTA+TGG + chr1.1:53509116-53509135 MS.gene49365:intron 30.0%
!!! AGCATTGATACTTGTTTTTG+GGG - chr1.1:53507686-53507705 None:intergenic 30.0%
!!! ATACAGGGTTTTGAAATTTG+GGG + chr1.1:53508770-53508789 MS.gene49365:CDS 30.0%
!!! CATACAGGGTTTTGAAATTT+GGG + chr1.1:53508769-53508788 MS.gene49365:CDS 30.0%
!!! TGTAAATCCCCTTTTTTATC+CGG + chr1.1:53509353-53509372 MS.gene49365:intron 30.0%
AAAAAAACTAAGCCACTGCT+TGG - chr1.1:53508509-53508528 None:intergenic 35.0%
AAACACTATATGCTTTACGG+TGG + chr1.1:53509206-53509225 MS.gene49365:intron 35.0%
AAAGCAAAAGGAACCACTTA+AGG + chr1.1:53508047-53508066 MS.gene49365:CDS 35.0%
AACACTATATGCTTTACGGT+GGG + chr1.1:53509207-53509226 MS.gene49365:intron 35.0%
AAGAAGACAAAGGGATTTAC+AGG - chr1.1:53510358-53510377 None:intergenic 35.0%
AAGATGACAAATACCTGCAA+AGG - chr1.1:53509029-53509048 None:intergenic 35.0%
AATGACCAGGGTTTATAACA+TGG - chr1.1:53507855-53507874 None:intergenic 35.0%
ACTTACACTTCCAAGACATA+AGG - chr1.1:53510031-53510050 None:intergenic 35.0%
ACTTCAATACCCATACTTGT+TGG - chr1.1:53509901-53509920 None:intergenic 35.0%
AGTTTAGTACCCAACAAGTA+TGG + chr1.1:53509888-53509907 MS.gene49365:intron 35.0%
ATAAACCTAGGTTGTGAACT+TGG - chr1.1:53507778-53507797 None:intergenic 35.0%
ATCAGCATAATCAGTTCGAA+AGG - chr1.1:53508109-53508128 None:intergenic 35.0%
ATGGTCAGTAAGTCATAACA+TGG - chr1.1:53509186-53509205 None:intergenic 35.0%
ATGTTATAAACCCTGGTCAT+TGG + chr1.1:53507854-53507873 MS.gene49365:CDS 35.0%
CAATAGCCTTCAATGTTAAC+TGG + chr1.1:53510084-53510103 MS.gene49365:intron 35.0%
CACTTATTACTTCCTTGCAT+TGG + chr1.1:53510212-53510231 MS.gene49365:intron 35.0%
CTTCAATACCCATACTTGTT+GGG - chr1.1:53509900-53509919 None:intergenic 35.0%
GCAAAACCCAAAATGGAAAT+GGG + chr1.1:53507617-53507636 MS.gene49365:CDS 35.0%
GCTTATTTGAGCTCATTTAC+TGG + chr1.1:53508286-53508305 MS.gene49365:intron 35.0%
GTAAACTTAAAGGATGGGAT+AGG - chr1.1:53509401-53509420 None:intergenic 35.0%
GTAGGCACATCTAATCTAAA+AGG - chr1.1:53509300-53509319 None:intergenic 35.0%
GTTCCTAAAATGTTGCAAGT+AGG - chr1.1:53509318-53509337 None:intergenic 35.0%
GTTTAGTACCCAACAAGTAT+GGG + chr1.1:53509889-53509908 MS.gene49365:intron 35.0%
TATGACCATGTTATAAACCC+TGG + chr1.1:53507847-53507866 MS.gene49365:CDS 35.0%
TCAGCATAATCAGTTCGAAA+GGG - chr1.1:53508108-53508127 None:intergenic 35.0%
TCAGTAAGTCATAACATGGT+AGG - chr1.1:53509182-53509201 None:intergenic 35.0%
TCTTTGAGCCACATGTAAAT+AGG - chr1.1:53510430-53510449 None:intergenic 35.0%
TGCAAAACCCAAAATGGAAA+TGG + chr1.1:53507616-53507635 MS.gene49365:CDS 35.0%
TGCAAATACACCTCTTTCAA+AGG - chr1.1:53508609-53508628 None:intergenic 35.0%
TTAAGGATGTCCAGCTAAAA+AGG + chr1.1:53508913-53508932 MS.gene49365:CDS 35.0%
TTCACAGGTTCAGATTTCAA+TGG + chr1.1:53507646-53507665 MS.gene49365:CDS 35.0%
! AACCAAACCCATTTCCATTT+TGG - chr1.1:53507627-53507646 None:intergenic 35.0%
! AAGAAGAAGAGTATATCGAG+TGG + chr1.1:53508874-53508893 MS.gene49365:CDS 35.0%
! ACCAAACCCATTTCCATTTT+GGG - chr1.1:53507626-53507645 None:intergenic 35.0%
! GTTCTTCTTGATGACTGTTA+GGG + chr1.1:53508250-53508269 MS.gene49365:intron 35.0%
! TGTTCTTCTTGATGACTGTT+AGG + chr1.1:53508249-53508268 MS.gene49365:intron 35.0%
! TGTTTCTCAGCATTGAATAC+TGG + chr1.1:53508718-53508737 MS.gene49365:intron 35.0%
!! TAAAAAGGATTGGCCCAAAA+TGG + chr1.1:53508928-53508947 MS.gene49365:CDS 35.0%
!! TTTATTTTCAATTGCGGGCA+TGG + chr1.1:53509961-53509980 MS.gene49365:intron 35.0%
!!! CCCTGTACATGTTTTTTTGT+TGG + chr1.1:53509488-53509507 MS.gene49365:intron 35.0%
!!! GCATACAGGGTTTTGAAATT+TGG + chr1.1:53508768-53508787 MS.gene49365:CDS 35.0%
!!! TACAGGGTTTTGAAATTTGG+GGG + chr1.1:53508771-53508790 MS.gene49365:CDS 35.0%
AAACGCGACAACCAAAATGT+CGG - chr1.1:53508825-53508844 None:intergenic 40.0%
AAAGCGCAGTAAGAAGACAA+AGG - chr1.1:53510368-53510387 None:intergenic 40.0%
AACCAGCTGAACTTACTGAT+AGG + chr1.1:53507905-53507924 MS.gene49365:CDS 40.0%
AACCCATAATCAAGCCATGA+CGG - chr1.1:53508968-53508987 None:intergenic 40.0%
AAGCGCAGTAAGAAGACAAA+GGG - chr1.1:53510367-53510386 None:intergenic 40.0%
AGGTACTCCGGATAAAAAAG+GGG - chr1.1:53509363-53509382 None:intergenic 40.0%
ATAGGTTCTCAAATGTGCTC+AGG - chr1.1:53509383-53509402 None:intergenic 40.0%
ATATCTTCAGTCCAATGACC+AGG - chr1.1:53507868-53507887 None:intergenic 40.0%
ATCAATGTAGATATGGGTCC+AGG + chr1.1:53509925-53509944 MS.gene49365:intron 40.0%
CACACACAGACACTACAAAA+AGG - chr1.1:53509632-53509651 None:intergenic 40.0%
CAGCTACAAGATTGCAACAA+AGG - chr1.1:53508551-53508570 None:intergenic 40.0%
CAGGTACTCCGGATAAAAAA+GGG - chr1.1:53509364-53509383 None:intergenic 40.0%
GATGTCCAGCTAAAAAGGAT+TGG + chr1.1:53508918-53508937 MS.gene49365:CDS 40.0%
GTATATCGAGTGGTTTACGA+AGG + chr1.1:53508884-53508903 MS.gene49365:CDS 40.0%
GTCATAACATGGTAGGTATC+AGG - chr1.1:53509175-53509194 None:intergenic 40.0%
TATCTTCAGTCCAATGACCA+GGG - chr1.1:53507867-53507886 None:intergenic 40.0%
TCAGGTACTCCGGATAAAAA+AGG - chr1.1:53509365-53509384 None:intergenic 40.0%
TGAAAAAACAGACACACACC+AGG - chr1.1:53509145-53509164 None:intergenic 40.0%
TTCCTATCAGTAAGTTCAGC+TGG - chr1.1:53507910-53507929 None:intergenic 40.0%
TTGGAGGAAAACTAGTTCCT+GGG + chr1.1:53509758-53509777 MS.gene49365:intron 40.0%
TTTGCTTTAGCAAGCTGATG+AGG - chr1.1:53508030-53508049 None:intergenic 40.0%
! AAAGTGGCTTCCTTTGAAAG+AGG + chr1.1:53508596-53508615 MS.gene49365:intron 40.0%
! ACCCAAAATGGAAATGGGTT+TGG + chr1.1:53507622-53507641 MS.gene49365:CDS 40.0%
! ATTATGGGTTGTTCTGTGAC+TGG + chr1.1:53508978-53508997 MS.gene49365:CDS 40.0%
! GAACTCCACGATACCATTTT+GGG - chr1.1:53508944-53508963 None:intergenic 40.0%
! GCTTGCTAAAGCAAAGCAAA+AGG + chr1.1:53508035-53508054 MS.gene49365:CDS 40.0%
! GTGCCTACTTGCAACATTTT+AGG + chr1.1:53509312-53509331 MS.gene49365:intron 40.0%
! TAAAGGCGTATGAAACAGCA+TGG - chr1.1:53508179-53508198 None:intergenic 40.0%
! TCTTGGAAGTGTAAGTAGCA+TGG + chr1.1:53510035-53510054 MS.gene49365:intron 40.0%
!! ATGCTTGTTGTTGATGTTGG+TGG + chr1.1:53507931-53507950 MS.gene49365:CDS 40.0%
!! GGTACTGGTTTCACTACATT+GGG + chr1.1:53507955-53507974 MS.gene49365:CDS 40.0%
!! TGGTACTGGTTTCACTACAT+TGG + chr1.1:53507954-53507973 MS.gene49365:CDS 40.0%
!!! GGTGTGTGTCTGTTTTTTCA+AGG + chr1.1:53509145-53509164 MS.gene49365:intron 40.0%
AACCAAAATGTCGGGTAGAC+AGG - chr1.1:53508816-53508835 None:intergenic 45.0%
AACGCGACAACCAAAATGTC+GGG - chr1.1:53508824-53508843 None:intergenic 45.0%
ATACAAACCACGAAGCTGCT+AGG - chr1.1:53510402-53510421 None:intergenic 45.0%
ATAGATATGTGTCCGCTGGA+AGG + chr1.1:53508127-53508146 MS.gene49365:CDS 45.0%
ATGGCTTCACTAATGCTCAG+TGG + chr1.1:53507568-53507587 MS.gene49365:CDS 45.0%
ATTGGCCCAAAATGGTATCG+TGG + chr1.1:53508936-53508955 MS.gene49365:CDS 45.0%
CAAGACCAAGTTCACAACCT+AGG + chr1.1:53507770-53507789 MS.gene49365:CDS 45.0%
CCTGGGCATGGTAAAGAAAA+TGG + chr1.1:53509775-53509794 MS.gene49365:intron 45.0%
CTGTTAGGGCCTATTTGGAT+TGG + chr1.1:53508264-53508283 MS.gene49365:intron 45.0%
GACATCGATATACCTTCCAG+CGG - chr1.1:53508142-53508161 None:intergenic 45.0%
GATGACTGTTAGGGCCTATT+TGG + chr1.1:53508259-53508278 MS.gene49365:intron 45.0%
GCCTGACCAGTTAACATTGA+AGG - chr1.1:53510093-53510112 None:intergenic 45.0%
GCCTTCAATGTTAACTGGTC+AGG + chr1.1:53510089-53510108 MS.gene49365:intron 45.0%
GGGGGCAAAGCATGTTTAAT+TGG + chr1.1:53508789-53508808 MS.gene49365:CDS 45.0%
GTTGGAGGAAAACTAGTTCC+TGG + chr1.1:53509757-53509776 MS.gene49365:intron 45.0%
GTTTACGAAGGCAGGGTTTA+AGG + chr1.1:53508896-53508915 MS.gene49365:CDS 45.0%
TAAGCTGTTTAGCCAAGCAG+TGG + chr1.1:53508494-53508513 MS.gene49365:intron 45.0%
TCAAATGTGCTCAGGTACTC+CGG - chr1.1:53509375-53509394 None:intergenic 45.0%
TGTTTCTCCTTATGGTGTCC+TGG + chr1.1:53509124-53509143 MS.gene49365:intron 45.0%
TTCTTACTGCGCTTTGCCTT+GGG + chr1.1:53510373-53510392 MS.gene49365:CDS 45.0%
! ACTGCAGTTTTGCCAATGCA+AGG - chr1.1:53510227-53510246 None:intergenic 45.0%
! CCATTTTCTTTACCATGCCC+AGG - chr1.1:53509778-53509797 None:intergenic 45.0%
! CGAACTCCACGATACCATTT+TGG - chr1.1:53508945-53508964 None:intergenic 45.0%
! GGAAATGGGTTTGGTTTCAC+AGG + chr1.1:53507631-53507650 MS.gene49365:CDS 45.0%
! TCTCAGCATTGAATACTGGC+CGG + chr1.1:53508722-53508741 MS.gene49365:intron 45.0%
! TGGCATCAAGGAAGCATACA+GGG + chr1.1:53508755-53508774 MS.gene49365:CDS 45.0%
!! CTTGTTGTTGATGTTGGTGG+TGG + chr1.1:53507934-53507953 MS.gene49365:CDS 45.0%
!! TTCTGCAATTTGCTGCAGCT+TGG + chr1.1:53510307-53510326 MS.gene49365:intron 45.0%
!! TTGGGCCAATCCTTTTTAGC+TGG - chr1.1:53508926-53508945 None:intergenic 45.0%
AAAGGAGAATCCCCAGATGC+AGG - chr1.1:53509011-53509030 None:intergenic 50.0%
ACACACACCAGGACACCATA+AGG - chr1.1:53509134-53509153 None:intergenic 50.0%
ATCGAGTGGTTTACGAAGGC+AGG + chr1.1:53508888-53508907 MS.gene49365:CDS 50.0%
ATCTGGGGATTCTCCTTTGC+AGG + chr1.1:53509013-53509032 MS.gene49365:CDS 50.0%
CGCCGTCATGGCTTGATTAT+GGG + chr1.1:53508963-53508982 MS.gene49365:CDS 50.0%
CGCGTTTCTTCGCAGATGTT+TGG + chr1.1:53508838-53508857 MS.gene49365:CDS 50.0%
CTTCTTACTGCGCTTTGCCT+TGG + chr1.1:53510372-53510391 MS.gene49365:CDS 50.0%
GCTGATAGATATGTGTCCGC+TGG + chr1.1:53508123-53508142 MS.gene49365:CDS 50.0%
GGAAAACTAGTTCCTGGGCA+TGG + chr1.1:53509763-53509782 MS.gene49365:intron 50.0%
TCGAGTGGTTTACGAAGGCA+GGG + chr1.1:53508889-53508908 MS.gene49365:CDS 50.0%
TCGCCGTCATGGCTTGATTA+TGG + chr1.1:53508962-53508981 MS.gene49365:CDS 50.0%
TTTGCTGCAGCTTGGTCCAA+AGG + chr1.1:53510315-53510334 MS.gene49365:intron 50.0%
! ACTGGTGTTAAGCCTGCATC+TGG + chr1.1:53508996-53509015 MS.gene49365:CDS 50.0%
! CTGGTGTTAAGCCTGCATCT+GGG + chr1.1:53508997-53509016 MS.gene49365:CDS 50.0%
! GTCCTGTCTACCCGACATTT+TGG + chr1.1:53508811-53508830 MS.gene49365:CDS 50.0%
! GTGGCATCAAGGAAGCATAC+AGG + chr1.1:53508754-53508773 MS.gene49365:CDS 50.0%
! TGGTGTTAAGCCTGCATCTG+GGG + chr1.1:53508998-53509017 MS.gene49365:CDS 50.0%
!! GTTGATGTTGGTGGTGGTAC+TGG + chr1.1:53507940-53507959 MS.gene49365:CDS 50.0%
TATCGTGGAGTTCGCCGTCA+TGG + chr1.1:53508951-53508970 MS.gene49365:CDS 55.0%
TTGATGCCACGCTGTGGATC+CGG - chr1.1:53508744-53508763 None:intergenic 55.0%
GCTTCCTTGATGCCACGCTG+TGG - chr1.1:53508750-53508769 None:intergenic 60.0%
GGATCCACAGCGTGGCATCA+AGG + chr1.1:53508743-53508762 MS.gene49365:CDS 60.0%
CGAAGCTGCTAGGACGCCCA+AGG - chr1.1:53510392-53510411 None:intergenic 65.0%
TACTGGCCGGATCCACAGCG+TGG + chr1.1:53508735-53508754 MS.gene49365:CDS 65.0%
TGGGCGTCCTAGCAGCTTCG+TGG + chr1.1:53510392-53510411 MS.gene49365:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 53507568 53510480 53507568 ID=MS.gene49365
chr1.1 mRNA 53507568 53510480 53507568 ID=MS.gene49365.t1;Parent=MS.gene49365
chr1.1 exon 53507568 53508148 53507568 ID=MS.gene49365.t1.exon1;Parent=MS.gene49365.t1
chr1.1 CDS 53507568 53508148 53507568 ID=cds.MS.gene49365.t1;Parent=MS.gene49365.t1
chr1.1 exon 53508728 53509034 53508728 ID=MS.gene49365.t1.exon2;Parent=MS.gene49365.t1
chr1.1 CDS 53508728 53509034 53508728 ID=cds.MS.gene49365.t1;Parent=MS.gene49365.t1
chr1.1 exon 53510325 53510480 53510325 ID=MS.gene49365.t1.exon3;Parent=MS.gene49365.t1
chr1.1 CDS 53510325 53510480 53510325 ID=cds.MS.gene49365.t1;Parent=MS.gene49365.t1
Gene Sequence

>MS.gene49365

ATGGCTTCACTAATGCTCAGTGGAACTCAAAAGCTTACATTTTTGAATTGCAAAACCCAAAATGGAAATGGGTTTGGTTTCACAGGTTCAGATTTCAATGGTAAGAGCTTAATTTCCCCAAAAACAAGTATCAATGCTAAAATTAGGGTTTCCAATTTGAAGAGAAACATTGTAGTACGTTCTAGTTCTAGTGTATCATCTTCAAGACCAAGTTCACAACCTAGGTTTATACAACACAAAAAAGAAGCATTTTGGTTTTATAGGTTTCTTTCAATTGTGTATGACCATGTTATAAACCCTGGTCATTGGACTGAAGATATGAGAGATGAAGCTCTTGAACCAGCTGAACTTACTGATAGGAATATGCTTGTTGTTGATGTTGGTGGTGGTACTGGTTTCACTACATTGGGTATTGTTAAGCATGTCGATGCTAAGAATGTAACTATTCTTGATCAGTCACCTCATCAGCTTGCTAAAGCAAAGCAAAAGGAACCACTTAAGGATTGTAAAATTGTTGAAGGGGATGCTGAAGATTTACCCTTTCGAACTGATTATGCTGATAGATATGTGTCCGCTGGAAGGTATATCGATGTCTTCACTTCAGATATCCATGCTGTTTCATACGCCTTTAAATAATTATGCATGGTTAATTTCTACAAAATTGCTTAATTTGTATCTGCATGTTCTTCTTGATGACTGTTAGGGCCTATTTGGATTGGCTTATTTGAGCTCATTTACTGGCATAAACACTTGTGAGACTGTTTGAAAGAACGTATGAAAACAACTTATGACATTTTCAGTTTGTTTTCATAAGCTCTCCAAGATAGCTTATACGAAAACAATTTACCTTTATTTTTCTCTTGTTATAGAAATAGCTTATACATAAGCGTTTATCATGATAAGCGCTTATGCTATACACTGCAAATTAAGCTGTTTAGCCAAGCAGTGGCTTAGTTTTTTTTTTTTTTTGGACTTGCATGCCTTTGTTGCAATCTTGTAGCTGCTACTGCTCAAGTGTACATAGATATAAAGTGGCTTCCTTTGAAAGAGGTGTATTTGCATGCTTTAGTTGCAATGTTGATGTTGTTGTTCAAGTGTATATAGATATAAAGTAGATTGCTTTGAAAGAGGAGTGATAATGATATGCTTTTGTTTCTCAGCATTGAATACTGGCCGGATCCACAGCGTGGCATCAAGGAAGCATACAGGGTTTTGAAATTTGGGGGCAAAGCATGTTTAATTGGTCCTGTCTACCCGACATTTTGGTTGTCGCGTTTCTTCGCAGATGTTTGGATGCTTTTCCCTAAAGAAGAAGAGTATATCGAGTGGTTTACGAAGGCAGGGTTTAAGGATGTCCAGCTAAAAAGGATTGGCCCAAAATGGTATCGTGGAGTTCGCCGTCATGGCTTGATTATGGGTTGTTCTGTGACTGGTGTTAAGCCTGCATCTGGGGATTCTCCTTTGCAGGTATTTGTCATCTTAGCTTCTTAATTATATTGTTGTCGATTTTTCCCTTCTTTTATGCTTAATCAAATCAAAGGTATGTTGTATAAGGTTGTTTCTCCTTATGGTGTCCTGGTGTGTGTCTGTTTTTTCAAGGACATCCTGATACCTACCATGTTATGACTTACTGACCATAAACACTATATGCTTTACGGTGGGATTAGCACTTAGCAGTGTGAACACCCTCAACTGATGACTATTTCAAATTTAAAGCTGTAATTCATTTCCTTTTAGATTAGATGTGCCTACTTGCAACATTTTAGGAACTTGAGTTATTTTTGCTGTAAATCCCCTTTTTTATCCGGAGTACCTGAGCACATTTGAGAACCTATCCCATCCTTTAAGTTTACCTCTTTTTTCTATCTATTATTCATACATTAAAGATTTTTTGTTAATCTATTAGCAGTTCTTTTAAAACCCTGTACATGTTTTTTTGTTGGATTGTTTGACATTTCATAAATATGTCCCTATATCTATATGCTTACTGATTTTTACATGAAATGACTATGGATGCTAGTGTGTTACTTTTACTAGTAATTTGTTTTATATATTCATAAACCTTTTTGTAGTGTCTGTGTGTGTGTTTATTCAAAAACAAACATTTTTAAATTAAACTCAAAACAAGAAAAAGTTTAACCATATTAAATGTGGAAACTTCCATTGAAGTGATCATGTTTGATATTTAAGTTGGAGGAAAACTAGTTCCTGGGCATGGTAAAGAAAATGGTGTATTGATTTAAATGAGTTACAACATTATTTTGTTTATGTTTGATTTATTATTGTTAAGTGTGGATAGCTGATACTTACAAGTGTAAGTAGTTTAGTACCCAACAAGTATGGGTATTGAAGTTGATATCAATGTAGATATGGGTCCAGGTATGTTTTTTAATTTTATTTTCAATTGCGGGCATGGCGACGAATACTATAGTATTCTACTCAAACCCTACCAATTGTAATCCTTATGTCTTGGAAGTGTAAGTAGCATGGAGTTATGAACAAAACACTACGGATGACAATAGCCTTCAATGTTAACTGGTCAGGCTGTTGTGCACTTATGCCTAAATCAAAATCTCTATATTCAGCTTAACAAAGCTATAGGATTTGAGGTTTTATTGCATATATTAACTTTAGTCAAAGAACACACTTATTACTTCCTTGCATTGGCAAAACTGCAGTGCAGAAATATATTTTCTTATCATTGCTTCACAATATAAAATATACTGATTCAGTTATAAATTCTGCAATTTGCTGCAGCTTGGTCCAAAGGAAGAAGATGTTGAAAAGCCTGTAAATCCCTTTGTCTTCTTACTGCGCTTTGCCTTGGGCGTCCTAGCAGCTTCGTGGTTTGTATTGATTCCTATTTACATGTGGCTCAAAGATCAAATTGTTCCCAAAGATCAGCCAATCTGA

Protein sequence

>MS.gene49365.t1

MASLMLSGTQKLTFLNCKTQNGNGFGFTGSDFNGKSLISPKTSINAKIRVSNLKRNIVVRSSSSVSSSRPSSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAELTDRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIVEGDAEDLPFRTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKFGGKACLIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQLGPKEEDVEKPVNPFVFLLRFALGVLAASWFVLIPIYMWLKDQIVPKDQPI