AlfalfaGEDB | MS.gene23417

M. sativa cultivar XinJiangDaYe / MS.gene23417

KEGG: K01593
GO: GO:0003674 GO:0003824 GO:0005488 GO:0006082 GO:0006520 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016829 GO:0016830 GO:0016831 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0048037 GO:0050662 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901564
PFAM: PF00282.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23417.t1	RHN48290.1	95.6	480	21	0	1	480	1	480	1.10E-266	928.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23417.t1	Q8RY79	73.8	477	125	0	1	477	12	488	9.5e-211	734.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23417.t1	G7KYF2	95.6	480	21	0	1	480	53	532	7.8e-267	928.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene23417	0.828039	1.12E-54	-1.69E-46
MS.gene049171	MS.gene23417	0.849624	2.87E-60	-1.69E-46
MS.gene049173	MS.gene23417	0.841146	5.67E-58	-1.69E-46
MS.gene049217	MS.gene23417	0.91166	4.73E-83	-1.69E-46
MS.gene049222	MS.gene23417	0.886373	3.62E-72	-1.69E-46
MS.gene049232	MS.gene23417	0.803834	2.88E-49	-1.69E-46
MS.gene049285	MS.gene23417	0.899677	1.56E-77	-1.69E-46
MS.gene049320	MS.gene23417	0.874351	7.23E-68	-1.69E-46
MS.gene04939	MS.gene23417	0.803307	3.71E-49	-1.69E-46
MS.gene049425	MS.gene23417	-0.812384	4.36E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene23417.t1	MTR_7g098700	95.625	480	21	0	1	480	53	532	955
MS.gene23417.t1	MTR_7g098730	95.000	480	24	0	1	480	27	506	950
MS.gene23417.t1	MTR_7g058700	54.435	496	208	2	1	478	4	499	572
MS.gene23417.t1	MTR_8g028060	54.949	495	188	4	1	477	20	497	570
MS.gene23417.t1	MTR_2g029430	52.242	513	210	2	1	478	4	516	560
MS.gene23417.t1	MTR_2g029450	52.242	513	210	2	1	478	4	516	560

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23417.t1	AT2G20340	73.795	477	125	0	1	477	12	488	0.0	758
MS.gene23417.t1	AT2G20340	68.553	477	123	1	1	477	12	461	0.0	689
MS.gene23417.t1	AT4G28680	65.833	480	160	1	1	476	60	539	0.0	679
MS.gene23417.t1	AT4G28680	65.768	482	159	2	1	476	60	541	0.0	676
MS.gene23417.t1	AT4G28680	65.560	482	160	2	1	476	51	532	0.0	674
MS.gene23417.t1	AT4G28680	65.560	482	160	2	1	476	60	541	0.0	674
MS.gene23417.t1	AT4G28680	61.961	510	160	3	1	476	51	560	0.0	659
MS.gene23417.t1	AT4G28680	67.953	337	102	2	1	331	51	387	4.28e-170	486
MS.gene23417.t1	AT4G28680	68.553	318	94	2	1	312	51	368	2.58e-161	462

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Find 107 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGTTGCAATGATTC+AGG	0.229186	7.2:-12669722	None:intergenic
AAAACCAGCGACGCTACTAT+TGG	0.364577	7.2:-12670809	None:intergenic
AAAAGAAATCATGAGGCAGA+AGG	0.579439	7.2:-12670942	None:intergenic
AAAGACTGGCAAATTCCTCT+TGG	0.449802	7.2:+12673438	MS.gene23417:CDS
AAGACTGGCAAATTCCTCTT+GGG	0.517080	7.2:+12673439	MS.gene23417:CDS
AATAAGCTGCCATTGCAATG+TGG	0.694198	7.2:-12673877	None:intergenic
ACAGGAAAAGATACTACCTG+GGG	0.769691	7.2:+12670744	MS.gene23417:CDS
ACATGAAACCAAATGTTGTT+GGG	0.506017	7.2:-12672776	None:intergenic
ACATGCCTCACTTCTGTCAA+CGG	0.579703	7.2:-12674379	None:intergenic
ACCTGAACTTGGCTAAGAAC+TGG	0.375623	7.2:-12669582	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATGTTGCAATGATTC+AGG	-	chr7.2:12669725-12669744	None:intergenic	30.0%
AAAGCTGTCATATATTCATG+GGG	+	chr7.2:12671426-12671445	MS.gene23417:intron	30.0%
AATCTGATAATACTCGGTTA+TGG	+	chr7.2:12672738-12672757	MS.gene23417:intron	30.0%
ACACATTGTTTATCATCAAG+GGG	-	chr7.2:12674313-12674332	None:intergenic	30.0%
ACATGAAACCAAATGTTGTT+GGG	-	chr7.2:12672779-12672798	None:intergenic	30.0%
AGACAAGTCCTTATATGATA+TGG	-	chr7.2:12670576-12670595	None:intergenic	30.0%
ATCAACACTCATTCTCTTAT+TGG	+	chr7.2:12670175-12670194	MS.gene23417:intron	30.0%
ATCTGATAATACTCGGTTAT+GGG	+	chr7.2:12672739-12672758	MS.gene23417:intron	30.0%
ATGGATGTGATTATATTGCA+GGG	+	chr7.2:12671152-12671171	MS.gene23417:intron	30.0%
CAAGAAGATAACAATACATG+TGG	+	chr7.2:12672522-12672541	MS.gene23417:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	12669501	12674459	12669501	ID=MS.gene23417
chr7.2	mRNA	12669501	12674459	12669501	ID=MS.gene23417.t1;Parent=MS.gene23417
chr7.2	exon	12669501	12669602	12669501	ID=MS.gene23417.t1.exon1;Parent=MS.gene23417.t1
chr7.2	CDS	12669501	12669602	12669501	ID=cds.MS.gene23417.t1;Parent=MS.gene23417.t1
chr7.2	exon	12669677	12669749	12669677	ID=MS.gene23417.t1.exon2;Parent=MS.gene23417.t1
chr7.2	CDS	12669677	12669749	12669677	ID=cds.MS.gene23417.t1;Parent=MS.gene23417.t1
chr7.2	exon	12670740	12670970	12670740	ID=MS.gene23417.t1.exon3;Parent=MS.gene23417.t1
chr7.2	CDS	12670740	12670970	12670740	ID=cds.MS.gene23417.t1;Parent=MS.gene23417.t1
chr7.2	exon	12671173	12671336	12671173	ID=MS.gene23417.t1.exon4;Parent=MS.gene23417.t1
chr7.2	CDS	12671173	12671336	12671173	ID=cds.MS.gene23417.t1;Parent=MS.gene23417.t1
chr7.2	exon	12671583	12671723	12671583	ID=MS.gene23417.t1.exon5;Parent=MS.gene23417.t1
chr7.2	CDS	12671583	12671723	12671583	ID=cds.MS.gene23417.t1;Parent=MS.gene23417.t1
chr7.2	exon	12672283	12672342	12672283	ID=MS.gene23417.t1.exon6;Parent=MS.gene23417.t1
chr7.2	CDS	12672283	12672342	12672283	ID=cds.MS.gene23417.t1;Parent=MS.gene23417.t1
chr7.2	exon	12672776	12672940	12672776	ID=MS.gene23417.t1.exon7;Parent=MS.gene23417.t1
chr7.2	CDS	12672776	12672940	12672776	ID=cds.MS.gene23417.t1;Parent=MS.gene23417.t1
chr7.2	exon	12673041	12673097	12673041	ID=MS.gene23417.t1.exon8;Parent=MS.gene23417.t1
chr7.2	CDS	12673041	12673097	12673041	ID=cds.MS.gene23417.t1;Parent=MS.gene23417.t1
chr7.2	exon	12673408	12673472	12673408	ID=MS.gene23417.t1.exon9;Parent=MS.gene23417.t1
chr7.2	CDS	12673408	12673472	12673408	ID=cds.MS.gene23417.t1;Parent=MS.gene23417.t1
chr7.2	exon	12673811	12673934	12673811	ID=MS.gene23417.t1.exon10;Parent=MS.gene23417.t1
chr7.2	CDS	12673811	12673934	12673811	ID=cds.MS.gene23417.t1;Parent=MS.gene23417.t1
chr7.2	exon	12674114	12674251	12674114	ID=MS.gene23417.t1.exon11;Parent=MS.gene23417.t1
chr7.2	CDS	12674114	12674251	12674114	ID=cds.MS.gene23417.t1;Parent=MS.gene23417.t1
chr7.2	exon	12674337	12674459	12674337	ID=MS.gene23417.t1.exon12;Parent=MS.gene23417.t1
chr7.2	CDS	12674337	12674459	12674337	ID=cds.MS.gene23417.t1;Parent=MS.gene23417.t1

Gene Sequence

>MS.gene23417

ATGGACGCTGAGCAACTGAGAGAGCAAGGTCATAAGATGGTTGATTTCATTGCTGATTACTACAAAACTATTGAAAATTTCCCAGTTCTTAGCCAAGTTCAGGTTCTCTTTCTATCCATTTTCATCTAATATTTGTTACAGTTTCATTTTCTTTCAACATTTCTCCCCCGTTGCAGCCAGGTTATCTTGGAAAGCTTCTACCAGATTCTGCTCCTACTCATCCTGAATCATTGCAACATGTTTTAAATGGTTTGATTACTTATACTTACTTACATTTCTCAATTAATTGACCTTTGCTTGTTTGTTTCTATTTATATTTGTCATACTTTGTTTTTGGTCATTATGTCTGCCATAAACTCACCTTATACTATTACTCCCTCCCTGCCTCTCAAAATGAATGCGCGGTTTTTAAGAAAATAATTAGTTGTGTTTATTTTAATAGTAAAATTAGTATTAATCACTAAAACACTCTTATTAATGGCAATTTGTAGACTAGTTAAATCGAGTGAAATTCAATAAATAAAGTTATATTTGTGGGGAGAAAATAATAAATGTTATATTGATATTCTAAAGTGACAATTATTTTGAGACAAAGAAAATATGCAAATGTGACAATTATTATTAAACGGAAGGGGTATTAAGAAGTGGAGTGCTAACTGCTAAGACACTCACTTATCAACACTCATTCTCTTATTGGGTGAAACCCTTGTGAGTGGGACCCATTTCCAAAGTATAGGTACTACATGAGTTTCATCCAACACGTGAATGACGGTTAGAGTGAGTGTTGAAAAGAGGGTGTTACTATTACTTCTCTAAAATATCATTGTCAAATATGTAGTTGATGGGGGCCTTAATCGCAGTCAAGGAGATATAAAAAAAACCTTGATGTGTATTTGGATGGGATTATGAACATTTTATTTGAGTTTATCTATGGAAGCATTTGACAGTGATTGAGAGTGCTCGGGGAAACAATTTATGACATGTTGACAAGCTGTTAGTTTCTGGCTAATATTGATATGCGTTTTTGGATAGCTTATGAAAACAACTTAAAGCTTATATGCAAACAATTTGACCATATCATATAAGGACTTGTCTGATAAGCGCTTATATGGTAGGTGTTTAATTAAGTTGTTCATCCAAATGAGCACTAACATGAGATGATTAATCCCTCTTTCTCAAGCACGGATGTTTTTTCTTTCGGGGAATGACTGATTTTTTTTCTTCACTTTCTTGTCATAGATGTACAGGAAAAGATACTACCTGGGGTGACACATTGGCAAAGCCCTAACTATTTTGCATATTTTCCATCCAATAGTAGCGTCGCTGGTTTTTTAGGAGAGATGCTTAGTGCTGGTCTCAACATTGTGGGATTCAGCTGGATAACTTCTCCCGCTGCAACTGAACTCGAAACAATTGTCCTCGACTGGCTTGCCAAGGCACTCCTTCTGCCTCATGATTTCTTTTCTACTGGTAAGCTCTTGGGTGATTGTTTCTGAGTTTTGATGACGTTGCAAAATCTTGCTCGGGATTTCATTACACCGTGAATGAAATTGGATTATTAAAATTGGAGTTTGAACCCACAAGGCATATGAAATATTTTTTAGGCAGAAGCTCATATACTATGATGACATGTAATTTAAACTTGTGATTCATGGATGTGATTATATTGCAGGGCAAGGGGGTGGAGTTATACAGGGAACAGCAAGTGAAGCTGTGGTAGTAGTGTTGGTGGCTGCCCGTGACAAGATCCTGCGAGCGGCTGGACGGAACGCTCTTCCTAAGCTTGTGACATATGCATCTGACCAAACACACTCCGCTTTACAAAAAGCCTGCCAGGTATGGTTAGTGACATTTCAAATTGAAAATGCCTATTGATCCATTGTTATTTTATAAACCAGTCCATATAGATGACACATGTGGTAAAAAAAGCTGTCATATATTCATGGGGTGACTCTTAGATTTGAACCTTGCATTTTTTAAAAGAAGTCCTTCTTTGCGTTGCTTGGTTGCATCCTTTGAGGTTGCATTATTATCAGGGAGATCATTTTATCGATTAATCATAATGGTCTTTTGCTTTGACAGATAGGAGGACTAAATCCAGAGCTCTGCAGGTTGCTTAAAACCGATTCTTCCACAAATTTTGCGCTTTCCCCTGATGTACTTTCTGAAGCAATTTCAAATGACATTGCCAGTGGTCTTATACCTTTTTTCTTATGTGCTACCGTAAGAATTAAAGTCCTCTTATGCTAGTTTCTAATAAATTACTTTGCCGTGCATTACACGCTTAATAGTCCAGCTTTGTTATGTGTGTGTGTTCCTTATATCCAATATTTTTCTTCTTTTAATTTATGTATCTTACTAGTATGATGGGTTTGCAAATTAGAAAGTGCTCGGCTCATACAATCATTGGGTCAAGGGATAATATATCTTTCTATGTGGTGTTGTAAGAGAATTCTTTCTTCTTTTGTTAGATGCTGGGACACAGATGTCCTTCCATTAACTGCTTAGTCTCATGAAATTACACTCTTTCAGATCTTAAATTGTGCATGCAAGGAGATTCTGTGTCAAAATATTTTGCATGTTGACTTTTATATAGATGTTAAATCTGAAGATTGTACTAAATAGGTGATAAACATGGGGAATTTTACCAACTAAAACTCTATGGTTGGTACTAATGTTTGTTCTGTATTTCTTGTTGGAGATGTTTCTGAATATTCAAATCAAGTTGAGATGGCTATTAAGTTTTCGCGTTGACTGCATTCACTACATTTTATGTGTGCAGGTTGGTACTACTTCATCAACAGCTGTTGATCCTCTACCTGCATTGGCAAAAGTCACTAAGGTAATGTCTTTGATTTAATTGATAAGCAAACTTACTAGTATAACAATCAAGGCATTGTAGTGTGGATACTAACTAAAGTCAAAGTCCAAATAGTTGAAAGAATTATGTGAGTCCTAAGTAACTAGGAAGACAACTAGATAGATGAAAAATAGAAATGATTATGCCGTAAGTTAGAAACCCAAGAAGATAACAATACATGTGGAACATAAAAAATAAACATTTTAGACAGAGTAATAAGTGTTACCAAAAGTTTTCACAAAATGGTTGTACAAATATCATTACTTTTTAGACATGGATTTGATAACGGTCACGCTATGCCATTTCTTGGAAGATTCCCTATGAAATGACCAACATAAAATTGATAAGTGTTTTGAGTGCATCTTAGAGAGTGATATAATCTGATAATACTCGGTTATGGGTGTCTTATTGGTAGCCCAACAACATTTGGTTTCATGTGGATGCTGCGTATGCTGGAAGTGCTTGTATATGTCCAGAGTACCGCCACTTCATTGATGGGGTTGAAGAAGCAGATTCATTTAACATGAATGCACATAAATGGTTCCTTACTAACTTCGACTGTTCAGTGCTTTGGGTTAAGGTATCCATAATATCTTTCTAAATGTCACTTCTGAAACTTTATTTCTAACATTTCATTTTACTTTATAAACAAAAATATAAGTTGATATGTGTTGATACAGGACAGAAGTGCTTTGATTCAGTCGCTGTCTACAAATCCAGAATTTCTGAAAAATAAGGTAGGTTTCTATTTGCATGTTTGTAGCTTGTATTAAAATTTTGTGACAGAAGTGCCATTGTTAATGTGAAGTCTTTTTTTGTTGGTATGTTTTACGGGAAATCATGATTCTTAGGAATGTTTATAAGAAATTAAGATTCCTAGTTATCCCCCTGACAAACATATTCTCTTCCTCTACTGTTCATGGATTGGGTCCTATACTGAGTAAACAGGGTCGTTTGGCTTAAGTTTCTTAAACAGGAAGCATATCTTTCAAAATGTTGCAGCTTAAGTCCTTGTCTAATTGTGTGCTTATGGTATTGAATGTCCAGGCCTCTCAAGAAAACACGGTCATAGATTACAAAGACTGGCAAATTCCTCTTGGGCGTCGGTTTAGGTGCGTCTTTGAAATTTTTCTTTTAGAAAACCATGTTTTTGCTCTCTATTAACAGACATACATCTGTGTCTGTGGTGTTCAGCATCTGCTCATGCATAAATTATCATTATTCATTCATTGGGACTCATAATCCGTTTTGATGTGATCATGATTTGTAATGTTTCTTTGATTTTTATTTTTATGGATTTATATATATGTAGTTGGTTTTTCAGTTATGACTTTTATTAAATCCTTTGTACCGCTATCACTTTTTAATAAAAAAAAATACACATTAAAGATCCATAATTACCGTCACACGTGTAACTTAAACTTGCCTGCTAACCTACACTGGGCTCCAGATCACTAAAACTGTGGATGGTGATGCGACTCTATGGATTAGAAGGCCTGCGAACTCACATAAGAAACCACATTGCAATGGCAGCTTATTTTGAGGAGCTTGTTGTTCAAGACACTAGATTCAAGGTACTCTTTGTTCTAGGACAAATAGCATAATGCATCATATGTACAAGTGTAACCTGGCATTAGAGTTTCGCTCTAAATAATTTGTTCATTGTCAAAACATGCATTTCTTATCTTAATTACTTACTGTATTTAATTCTGTGCATAACCATGAAAAAAATGCATCAAATTTATATACTCAGGTTGTTGCGCCTCGAACATTCTCTTTAGTTTGTTTTCGCCTTTTGCCTTCCCCAAACTCTGAAGATAATGGCAATAAACTGAACCATGATCTACTCGACTCAGTAAATTCAACGGGAAGTGTTTTCATAACACATACGGTATGCATAAATTAACTTCTGGGTTTTGTTCTGTTTATCACCTATGTAATATGTTCTTCCCCTTGATGATAAACAATGTGTGCAGGTTTTATCAGGTGAGTACATTCTACGTTTCGCAGTAGGAGCACCGTTGACAGAAGTGAGGCATGTCAGTGCAGCGTGGCAGATTTTGCAAGAAAAAGCCACTGCTCTATTAGAGAGTTTATAG

Protein sequence

>MS.gene23417.t1

MDAEQLREQGHKMVDFIADYYKTIENFPVLSQVQPGYLGKLLPDSAPTHPESLQHVLNDVQEKILPGVTHWQSPNYFAYFPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELETIVLDWLAKALLLPHDFFSTGQGGGVIQGTASEAVVVVLVAARDKILRAAGRNALPKLVTYASDQTHSALQKACQIGGLNPELCRLLKTDSSTNFALSPDVLSEAISNDIASGLIPFFLCATVGTTSSTAVDPLPALAKVTKPNNIWFHVDAAYAGSACICPEYRHFIDGVEEADSFNMNAHKWFLTNFDCSVLWVKDRSALIQSLSTNPEFLKNKASQENTVIDYKDWQIPLGRRFRSLKLWMVMRLYGLEGLRTHIRNHIAMAAYFEELVVQDTRFKVVAPRTFSLVCFRLLPSPNSEDNGNKLNHDLLDSVNSTGSVFITHTVLSGEYILRFAVGAPLTEVRHVSAAWQILQEKATALLESL