AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065816


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065816.t1 MTR_1g078110 95.515 379 17 0 1 379 382 760 0.0 743
MS.gene065816.t1 MTR_8g024380 79.683 379 73 2 1 375 383 761 0.0 628
MS.gene065816.t1 MTR_2g049200 71.204 382 104 5 1 379 384 762 0.0 541
MS.gene065816.t1 MTR_8g024390 70.027 377 107 4 3 374 384 759 0.0 531
MS.gene065816.t1 MTR_8g024420 70.976 379 104 4 1 374 346 723 0.0 527
MS.gene065816.t1 MTR_8g024370 67.969 384 109 6 1 374 379 758 7.25e-171 496
MS.gene065816.t1 MTR_7g118080 65.782 377 121 7 4 375 385 758 1.43e-164 479
MS.gene065816.t1 MTR_7g079310 47.493 379 185 9 4 372 389 763 6.23e-107 331
MS.gene065816.t1 MTR_7g079300 46.809 376 190 8 4 372 393 765 8.90e-104 323
MS.gene065816.t1 MTR_1g079120 46.419 377 191 8 4 372 387 760 4.47e-97 305
MS.gene065816.t1 MTR_4g073540 43.959 389 195 12 3 376 391 771 6.76e-87 279
MS.gene065816.t1 MTR_8g027660 66.497 197 41 2 183 378 80 252 2.52e-84 257
MS.gene065816.t1 MTR_8g022870 41.799 378 201 8 11 373 403 776 5.56e-83 269
MS.gene065816.t1 MTR_8g021130 40.267 375 202 9 12 372 408 774 3.60e-80 261
MS.gene065816.t1 MTR_4g102400 41.962 367 190 10 14 372 401 752 1.99e-78 256
MS.gene065816.t1 MTR_1g102350 37.173 382 206 9 11 375 415 779 4.60e-75 248
MS.gene065816.t1 MTR_7g075900 38.441 372 213 8 11 373 408 772 8.38e-74 244
MS.gene065816.t1 MTR_4g125180 42.540 315 157 9 70 373 451 752 3.96e-72 239
MS.gene065816.t1 MTR_2g042130 35.979 378 225 7 9 377 408 777 7.03e-72 239
MS.gene065816.t1 MTR_7g098630 38.624 378 204 10 12 372 394 760 1.12e-71 240
MS.gene065816.t1 MTR_5g055920 40.849 377 207 11 3 372 299 666 2.26e-71 236
MS.gene065816.t1 MTR_7g081580 39.896 386 186 14 12 372 419 783 3.56e-71 238
MS.gene065816.t1 MTR_7g081750 44.483 290 149 6 87 372 516 797 3.62e-71 238
MS.gene065816.t1 MTR_3g102810 41.067 375 198 10 12 371 387 753 4.94e-71 236
MS.gene065816.t1 MTR_5g025010 38.692 367 200 8 12 372 370 717 4.77e-70 233
MS.gene065816.t1 MTR_5g025010 38.692 367 200 8 12 372 402 749 7.02e-70 233
MS.gene065816.t1 MTR_3g061110 40.437 366 204 8 12 372 396 752 7.07e-70 233
MS.gene065816.t1 MTR_4g103480 40.263 380 205 11 3 372 419 786 8.50e-70 234
MS.gene065816.t1 MTR_5g016120 41.287 373 196 11 11 371 398 759 1.55e-69 233
MS.gene065816.t1 MTR_4g103450 40.000 380 206 11 3 372 376 743 1.39e-68 229
MS.gene065816.t1 MTR_7g081420 38.583 381 199 11 12 372 419 784 1.44e-68 230
MS.gene065816.t1 MTR_7g081380 44.674 291 148 8 87 372 524 806 1.77e-68 230
MS.gene065816.t1 MTR_4g095360 37.602 367 218 7 13 373 394 755 1.07e-67 228
MS.gene065816.t1 MTR_0047s0120 39.130 368 209 7 11 370 394 754 1.67e-67 227
MS.gene065816.t1 MTR_3g082200 36.951 387 211 12 3 375 267 634 3.06e-67 224
MS.gene065816.t1 MTR_7g481600 41.401 314 169 6 63 372 481 783 3.75e-67 227
MS.gene065816.t1 MTR_3g082200 36.951 387 211 12 3 375 282 649 5.50e-67 224
MS.gene065816.t1 MTR_5g085690 38.817 389 187 13 12 372 423 788 1.01e-66 225
MS.gene065816.t1 MTR_7g081500 38.259 379 202 11 12 372 418 782 1.21e-66 225
MS.gene065816.t1 MTR_5g011310 39.623 371 195 11 13 372 401 753 2.57e-66 224
MS.gene065816.t1 MTR_5g011190 39.678 373 192 10 13 372 401 753 3.06e-66 224
MS.gene065816.t1 MTR_3g082200 36.951 387 211 12 3 375 405 772 3.52e-66 224
MS.gene065816.t1 MTR_4g103430 39.130 368 207 9 12 372 411 768 4.74e-66 223
MS.gene065816.t1 MTR_1g018510 38.235 374 212 10 12 370 354 723 5.15e-66 223
MS.gene065816.t1 MTR_5g011320 37.940 369 203 9 13 372 394 745 1.24e-65 222
MS.gene065816.t1 MTR_8g033150 39.529 382 197 14 3 374 369 726 1.30e-65 221
MS.gene065816.t1 MTR_8g033150 39.529 382 197 14 3 374 396 753 1.53e-65 222
MS.gene065816.t1 MTR_5g011340 41.547 349 174 10 35 372 421 750 1.67e-65 221
MS.gene065816.t1 MTR_5g044060 74.265 136 34 1 87 221 1 136 3.58e-65 205
MS.gene065816.t1 MTR_4g134320 38.095 378 218 9 3 376 404 769 6.78e-65 220
MS.gene065816.t1 MTR_8g072440 37.432 366 204 8 12 372 365 710 1.05e-64 219
MS.gene065816.t1 MTR_5g011370 39.142 373 194 10 13 372 421 773 1.06e-64 220
MS.gene065816.t1 MTR_8g072440 37.432 366 204 8 12 372 407 752 2.48e-64 218
MS.gene065816.t1 MTR_5g011280 38.400 375 195 11 13 372 402 755 1.30e-63 216
MS.gene065816.t1 MTR_7g098070 41.748 309 169 5 68 376 468 765 2.37e-63 216
MS.gene065816.t1 MTR_8g042670 37.097 372 210 11 11 372 276 633 7.07e-63 212
MS.gene065816.t1 MTR_5g011260 39.276 387 195 14 3 372 388 751 1.72e-62 213
MS.gene065816.t1 MTR_8g079900 38.298 376 197 11 9 374 295 645 2.63e-62 211
MS.gene065816.t1 MTR_8g042710 36.148 379 211 12 9 372 401 763 2.75e-62 213
MS.gene065816.t1 MTR_5g096750 40.318 377 196 13 9 378 413 767 3.24e-62 213
MS.gene065816.t1 MTR_4g103490 37.705 366 215 9 12 372 426 783 4.38e-62 213
MS.gene065816.t1 MTR_8g083220 42.000 300 153 7 85 379 498 781 5.77e-62 212
MS.gene065816.t1 MTR_8g042670 37.366 372 209 11 11 372 400 757 5.95e-62 212
MS.gene065816.t1 MTR_4g103495 38.859 368 210 9 11 372 265 623 6.48e-62 209
MS.gene065816.t1 MTR_8g079900 38.298 376 197 11 9 374 393 743 1.03e-61 211
MS.gene065816.t1 MTR_5g011270 38.544 371 199 9 13 372 399 751 1.37e-61 211
MS.gene065816.t1 MTR_4g103400 39.096 376 205 12 11 372 411 776 7.33e-61 209
MS.gene065816.t1 MTR_4g053630 41.694 307 163 7 70 372 358 652 2.81e-60 206
MS.gene065816.t1 MTR_4g053630 41.694 307 163 7 70 372 435 729 1.03e-59 206
MS.gene065816.t1 MTR_8g027260 41.096 292 154 5 89 375 376 654 1.49e-59 204
MS.gene065816.t1 MTR_7g034380 36.605 377 209 13 3 372 338 691 6.50e-58 200
MS.gene065816.t1 MTR_7g075890 37.634 372 201 12 9 372 549 897 2.31e-57 201
MS.gene065816.t1 MTR_2g018135 37.995 379 212 10 5 373 418 783 4.65e-57 199
MS.gene065816.t1 MTR_8g005710 35.079 382 216 10 2 375 344 701 5.23e-57 197
MS.gene065816.t1 MTR_4g053635 40.385 312 167 8 70 377 381 677 5.26e-56 194
MS.gene065816.t1 MTR_6g055570 35.770 383 192 15 13 375 384 732 1.14e-55 194
MS.gene065816.t1 MTR_3g114420 39.365 315 171 10 72 375 462 767 1.20e-55 195
MS.gene065816.t1 MTR_2g018125 37.731 379 213 10 5 373 419 784 1.31e-55 195
MS.gene065816.t1 MTR_1g006990 35.917 387 202 14 6 377 384 739 2.07e-55 194
MS.gene065816.t1 MTR_1g007030 35.917 387 202 15 6 377 382 737 4.11e-55 193
MS.gene065816.t1 MTR_3g104930 36.939 379 209 13 11 373 398 762 9.05e-55 192
MS.gene065816.t1 MTR_3g010080 36.693 387 203 14 4 377 379 736 1.48e-54 191
MS.gene065816.t1 MTR_3g464790 35.884 379 199 13 4 373 389 732 1.28e-53 189
MS.gene065816.t1 MTR_7g104200 35.150 367 213 9 12 372 394 741 5.08e-53 187
MS.gene065816.t1 MTR_1g048110 36.528 386 197 16 6 375 380 733 2.33e-52 186
MS.gene065816.t1 MTR_8g006680 36.456 395 185 18 4 377 378 727 1.96e-51 183
MS.gene065816.t1 MTR_8g005300 36.456 395 185 18 4 377 378 727 1.96e-51 183
MS.gene065816.t1 MTR_8g005640 36.456 395 185 18 4 377 378 727 1.96e-51 183
MS.gene065816.t1 MTR_6g075370 37.918 269 148 5 99 363 424 677 2.09e-50 179
MS.gene065816.t1 MTR_4g103495 39.286 308 174 7 11 313 414 713 4.64e-50 179
MS.gene065816.t1 MTR_6g055410 41.155 277 138 10 108 375 454 714 1.43e-49 177
MS.gene065816.t1 MTR_2g042650 33.766 385 199 16 4 377 308 647 1.83e-43 160
MS.gene065816.t1 MTR_7g079295 50.296 169 72 4 206 372 351 509 9.05e-41 150
MS.gene065816.t1 MTR_2g044630 38.783 263 128 10 122 372 464 705 1.48e-40 152
MS.gene065816.t1 MTR_4g127480 35.836 293 153 11 97 371 537 812 6.33e-38 145
MS.gene065816.t1 MTR_2g070260 40.385 208 103 8 159 360 1 193 2.08e-34 126
MS.gene065816.t1 MTR_2g042640 34.701 268 135 7 75 334 376 611 9.59e-34 132
MS.gene065816.t1 MTR_3g452290 28.684 380 175 14 2 375 282 571 1.20e-33 132
MS.gene065816.t1 MTR_3g451220 28.684 380 175 14 2 375 282 571 1.20e-33 132
MS.gene065816.t1 MTR_4g126230 34.498 229 129 5 76 300 37 248 1.97e-33 125
MS.gene065816.t1 MTR_4g132620 33.333 279 165 7 99 367 542 809 1.30e-32 129
MS.gene065816.t1 MTR_3g114140 36.328 256 144 9 84 330 176 421 2.20e-31 123
MS.gene065816.t1 MTR_8g089230 33.442 308 171 13 83 372 554 845 1.88e-30 123
MS.gene065816.t1 MTR_2g037850 37.759 241 121 8 97 320 537 765 2.17e-30 123
MS.gene065816.t1 MTR_4g053665 34.866 261 123 7 118 377 1 215 2.51e-30 115
MS.gene065816.t1 MTR_7g081660 37.778 180 103 3 195 372 380 552 6.71e-29 118
MS.gene065816.t1 MTR_2g046740 33.784 296 155 13 99 372 562 838 7.03e-27 112
MS.gene065816.t1 MTR_3g114410 38.251 183 110 3 9 190 400 580 2.06e-25 108
MS.gene065816.t1 MTR_8g042710 36.269 193 103 7 9 190 401 584 2.57e-25 108
MS.gene065816.t1 MTR_4g071560 36.559 186 106 6 14 191 339 520 2.46e-23 102
MS.gene065816.t1 MTR_5g081130 34.615 182 94 7 202 372 5 172 2.69e-21 91.3
MS.gene065816.t1 MTR_5g011300 51.648 91 43 1 159 249 1 90 5.47e-18 79.0
MS.gene065816.t1 MTR_8g027670 57.500 80 34 0 246 325 33 112 1.03e-15 73.2
MS.gene065816.t1 MTR_3g005755 43.038 79 44 1 141 218 228 306 4.32e-14 72.8
MS.gene065816.t1 MTR_3g114400 32.402 179 90 9 203 373 8 163 6.35e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065816.t1 AT5G67090 43.501 377 179 10 9 375 380 732 9.08e-86 275
MS.gene065816.t1 AT4G34980 41.667 384 210 9 3 375 381 761 2.86e-82 266
MS.gene065816.t1 AT3G14240 39.737 380 204 7 13 373 397 770 8.79e-78 255
MS.gene065816.t1 AT5G51750 38.095 378 221 7 5 375 406 777 1.01e-77 255
MS.gene065816.t1 AT5G67360 40.431 371 204 7 11 373 394 755 2.04e-76 251
MS.gene065816.t1 AT2G05920 35.068 365 223 6 13 370 390 747 3.02e-73 242
MS.gene065816.t1 AT3G14067 36.533 375 217 9 13 372 399 767 2.42e-71 238
MS.gene065816.t1 AT1G04110 35.714 378 218 10 11 373 404 771 5.56e-68 229
MS.gene065816.t1 AT1G20160 38.961 385 209 12 4 374 352 724 1.05e-67 227
MS.gene065816.t1 AT1G20160 38.961 385 209 12 4 374 391 763 1.78e-67 227
MS.gene065816.t1 AT4G00230 39.200 375 196 11 9 374 394 745 3.42e-66 223
MS.gene065816.t1 AT2G04160 38.830 376 196 14 12 372 414 770 2.44e-65 221
MS.gene065816.t1 AT1G01900 38.624 378 215 10 8 373 400 772 2.12e-63 216
MS.gene065816.t1 AT4G26330 36.649 382 223 7 3 372 347 721 1.17e-61 211
MS.gene065816.t1 AT4G26330 36.649 382 223 7 3 372 361 735 1.66e-61 211
MS.gene065816.t1 AT5G59810 37.875 367 212 8 11 372 419 774 6.46e-60 207
MS.gene065816.t1 AT5G45650 37.368 380 209 11 8 373 425 789 1.12e-59 206
MS.gene065816.t1 AT5G45650 37.368 380 209 11 8 373 425 789 1.12e-59 206
MS.gene065816.t1 AT1G20150 38.583 381 202 12 13 374 405 772 3.57e-57 199
MS.gene065816.t1 AT4G10550 36.939 379 215 12 7 378 355 716 6.34e-57 198
MS.gene065816.t1 AT4G10550 36.939 379 215 12 7 378 355 716 6.34e-57 198
MS.gene065816.t1 AT4G10550 36.842 380 214 12 7 378 427 788 1.14e-56 198
MS.gene065816.t1 AT4G10550 36.939 379 215 12 7 378 411 772 1.39e-56 197
MS.gene065816.t1 AT3G46850 38.378 370 194 12 11 372 391 734 1.43e-56 197
MS.gene065816.t1 AT5G11940 37.609 343 190 10 44 379 434 759 4.98e-55 193
MS.gene065816.t1 AT4G10540 35.696 381 218 11 7 378 407 769 1.64e-54 192
MS.gene065816.t1 AT3G46840 36.631 374 195 13 11 372 391 734 3.93e-54 191
MS.gene065816.t1 AT4G10510 35.000 380 222 12 8 379 339 701 4.90e-53 187
MS.gene065816.t1 AT5G58830 38.655 357 186 13 35 372 363 705 5.02e-53 187
MS.gene065816.t1 AT1G32970 36.508 378 216 10 3 372 361 722 5.18e-53 187
MS.gene065816.t1 AT4G10510 34.715 386 225 13 4 379 348 716 6.71e-53 187
MS.gene065816.t1 AT4G10510 34.715 386 225 13 4 379 392 760 7.67e-53 187
MS.gene065816.t1 AT4G10510 34.715 386 225 13 4 379 404 772 8.77e-53 187
MS.gene065816.t1 AT5G58840 35.870 368 198 12 13 372 369 706 1.42e-52 186
MS.gene065816.t1 AT5G59100 35.904 376 205 11 11 375 390 740 2.15e-52 186
MS.gene065816.t1 AT5G03620 37.267 322 166 7 68 372 456 758 2.84e-52 186
MS.gene065816.t1 AT5G59090 37.297 370 198 13 12 372 384 728 3.79e-52 185
MS.gene065816.t1 AT5G59090 37.297 370 198 13 12 372 382 726 4.41e-52 185
MS.gene065816.t1 AT5G59090 37.027 370 194 13 12 372 384 723 1.34e-51 183
MS.gene065816.t1 AT1G32960 34.715 386 225 11 3 378 403 771 3.20e-51 183
MS.gene065816.t1 AT4G10520 37.243 341 196 7 41 378 425 750 9.49e-51 181
MS.gene065816.t1 AT5G59190 39.423 312 164 11 72 376 399 692 3.47e-50 179
MS.gene065816.t1 AT5G58820 37.968 374 196 15 5 372 357 700 4.33e-50 179
MS.gene065816.t1 AT1G32940 35.509 383 218 11 6 378 354 717 1.72e-49 177
MS.gene065816.t1 AT1G32940 35.509 383 218 11 6 378 354 717 1.72e-49 177
MS.gene065816.t1 AT1G32940 35.509 383 218 11 6 378 405 768 4.26e-49 177
MS.gene065816.t1 AT4G21630 37.758 339 188 10 40 372 432 753 2.69e-48 174
MS.gene065816.t1 AT5G59130 36.667 360 190 11 35 372 343 686 2.93e-48 174
MS.gene065816.t1 AT5G59130 36.667 360 190 11 35 372 382 725 4.10e-48 174
MS.gene065816.t1 AT4G21326 40.061 327 173 8 50 372 380 687 4.33e-48 173
MS.gene065816.t1 AT5G59130 36.667 360 190 11 35 372 378 721 4.35e-48 174
MS.gene065816.t1 AT4G21323 38.226 327 176 8 59 379 491 797 5.14e-47 171
MS.gene065816.t1 AT1G32950 34.031 382 225 11 6 378 353 716 6.62e-47 170
MS.gene065816.t1 AT5G59120 33.696 368 214 13 12 372 383 727 6.94e-47 170
MS.gene065816.t1 AT1G32950 34.031 382 225 11 6 378 404 767 8.13e-47 171
MS.gene065816.t1 AT5G59130 36.390 349 196 11 35 372 382 715 1.04e-46 170
MS.gene065816.t1 AT2G39850 35.279 377 199 17 29 376 409 769 1.16e-46 170
MS.gene065816.t1 AT4G21650 35.897 351 202 10 28 372 427 760 1.33e-46 170
MS.gene065816.t1 AT4G21640 39.032 310 166 10 69 372 435 727 1.70e-46 169
MS.gene065816.t1 AT1G66210 37.299 311 167 9 75 379 469 757 8.64e-46 167
MS.gene065816.t1 AT4G10530 34.012 344 196 7 38 378 426 741 2.92e-43 160
MS.gene065816.t1 AT1G66220 35.117 299 165 7 85 379 475 748 7.26e-43 159
MS.gene065816.t1 AT4G15040 34.127 378 202 11 10 372 340 685 2.05e-42 157
MS.gene065816.t1 AT4G15040 34.127 378 202 11 10 372 340 685 2.05e-42 157
MS.gene065816.t1 AT5G45640 36.765 272 155 6 110 373 490 752 5.80e-42 157
MS.gene065816.t1 AT1G32980 47.120 191 90 5 155 341 3 186 2.98e-41 144
MS.gene065816.t1 AT2G19170 36.082 291 156 11 97 371 533 809 1.25e-36 141
MS.gene065816.t1 AT2G19170 36.082 291 156 11 97 371 533 809 1.25e-36 141
MS.gene065816.t1 AT1G62340 31.051 409 196 17 33 375 444 832 9.88e-36 139
MS.gene065816.t1 AT4G30020 35.473 296 161 12 97 376 534 815 1.09e-35 139
MS.gene065816.t1 AT4G30020 35.473 296 161 12 97 376 534 815 1.09e-35 139
MS.gene065816.t1 AT4G30020 35.473 296 161 12 97 376 534 815 1.09e-35 139
MS.gene065816.t1 AT4G30020 35.473 296 161 12 97 376 534 815 1.09e-35 139
MS.gene065816.t1 AT5G44530 34.708 291 158 11 99 372 558 833 6.86e-34 133
MS.gene065816.t1 AT4G20430 34.247 292 160 11 99 373 573 849 9.86e-34 133
MS.gene065816.t1 AT4G20430 34.247 292 160 11 99 373 573 849 9.86e-34 133
MS.gene065816.t1 AT4G20430 34.247 292 160 11 99 373 549 825 1.01e-33 133
MS.gene065816.t1 AT1G30600 33.866 313 169 13 84 372 528 826 1.29e-33 132
MS.gene065816.t1 AT4G00230 40.976 205 102 6 9 209 394 583 1.97e-32 128
MS.gene065816.t1 AT5G44530 32.595 316 156 12 99 372 558 858 1.14e-30 124
MS.gene065816.t1 AT5G58840 35.359 181 96 5 13 190 369 531 4.68e-24 103
MS.gene065816.t1 AT5G03620 44.800 125 66 1 68 192 456 577 7.74e-22 97.4
MS.gene065816.t1 AT1G32940 35.437 206 117 6 6 205 405 600 5.18e-19 89.4
MS.gene065816.t1 AT5G59110 35.583 163 95 5 216 372 8 166 3.46e-18 81.6

Find 64 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACAATTTCACCATTTAT+TGG 0.226730 1.3:+55926908 None:intergenic
AATTATTGATTTGGTCAAAT+AGG 0.231583 1.3:+55927023 None:intergenic
GCTAGCATTGCACCAATTAA+AGG 0.236062 1.3:-55926179 MS.gene065816:CDS
TCATTAAACACCAACTTGTT+TGG 0.255326 1.3:+55926137 None:intergenic
ATCATTGTTAATCCAATAAA+TGG 0.259816 1.3:-55926920 MS.gene065816:CDS
GTGACACGAAACCCTTTAAT+TGG 0.274687 1.3:+55926167 None:intergenic
CTGCATTCAAATTATTGATT+TGG 0.289501 1.3:+55927014 None:intergenic
AAATTAAAGAAAGTGGCTTT+TGG 0.323736 1.3:-55926062 MS.gene065816:CDS
CATTAAACACCAACTTGTTT+GGG 0.335235 1.3:+55926138 None:intergenic
CCAGGGTCAAGTGCTCTATT+AGG 0.357114 1.3:+55926440 None:intergenic
TGAAAGGAGTGCATAGTGAT+TGG 0.379645 1.3:-55926592 MS.gene065816:CDS
ATGATGGAAATTCTTCTTCA+AGG 0.390280 1.3:-55926262 MS.gene065816:CDS
TGTGATAAGTGGAACATCTA+TGG 0.398520 1.3:-55926648 MS.gene065816:CDS
TTGAGGCTGGTGACCACAAT+AGG 0.402287 1.3:+55925999 None:intergenic
ATGGCGTGTCCTCATGTTGC+AGG 0.412710 1.3:-55926629 MS.gene065816:CDS
AGCGAATTCAATGTGATAAG+TGG 0.413723 1.3:-55926659 MS.gene065816:CDS
CTAGCATTGCACCAATTAAA+GGG 0.414915 1.3:-55926178 MS.gene065816:CDS
TGATTGCTCTAAACCTTCCT+TGG 0.422318 1.3:-55926318 MS.gene065816:CDS
GAATCTAGAATTTCAATTTG+AGG 0.433320 1.3:+55925982 None:intergenic
CCTGGACTTGTTTATGATGT+TGG 0.437192 1.3:-55926422 MS.gene065816:CDS
GGAAGGTTTAGAGCAATCAT+TGG 0.449304 1.3:+55926322 None:intergenic
ATTGGAGCCCAGCAGCTATT+CGG 0.456616 1.3:-55926574 MS.gene065816:CDS
TCCAACACAGGAACATTTGT+AGG 0.457074 1.3:+55926704 None:intergenic
CATAGAACAGTTACCAATGT+TGG 0.459195 1.3:-55926224 MS.gene065816:CDS
CTAGAATTTCAATTTGAGGC+TGG 0.467619 1.3:+55925986 None:intergenic
TATGACAAAATTAAAGAAAG+TGG 0.475264 1.3:-55926069 MS.gene065816:CDS
ATTTATTGGATTAACAATGA+TGG 0.481158 1.3:+55926922 None:intergenic
AGAAGCTAAGCTACAAATTG+AGG 0.490516 1.3:-55926106 MS.gene065816:CDS
GTTCTATGAAATTCTTGTAT+CGG 0.496052 1.3:+55926239 None:intergenic
TGACCAGCACCCAATGCAAA+AGG 0.509812 1.3:+55926470 None:intergenic
ATTGCCGACCGAATAGCTGC+TGG 0.510132 1.3:+55926566 None:intergenic
TGCCGCTAAGATCGAAGTAC+CGG 0.513591 1.3:+55926730 None:intergenic
TGCTTGTCCGTCACCAACAT+TGG 0.519518 1.3:+55926211 None:intergenic
TTTAGAGCAATCATTGGAAG+AGG 0.527393 1.3:+55926328 None:intergenic
TGTGAAGACAAGAATGGAAC+TGG 0.534251 1.3:-55927046 MS.gene065816:CDS
CCAACATCATAAACAAGTCC+AGG 0.542527 1.3:+55926422 None:intergenic
GTACCGGGTGCAGTAATGTC+AGG 0.544360 1.3:+55926746 None:intergenic
CACTGTTATCCCAAACAAGT+TGG 0.557580 1.3:-55926147 MS.gene065816:CDS
GCCTACAAATGTTCCTGTGT+TGG 0.558529 1.3:-55926705 MS.gene065816:CDS
ACGAATGGACAACTATATGA+TGG 0.560428 1.3:+55926776 None:intergenic
AGAAGGGTAGTTAAGATCCA+AGG 0.564628 1.3:+55926301 None:intergenic
AAGGAACACATCAAAGACAT+TGG 0.567669 1.3:-55926512 MS.gene065816:CDS
GTTGATTCGTATAGTTCAAG+AGG 0.572994 1.3:-55926800 MS.gene065816:CDS
TCCTCATGTTGCAGGTGTCG+CGG 0.581039 1.3:-55926621 MS.gene065816:CDS
CCTAATAGAGCACTTGACCC+TGG 0.582345 1.3:-55926440 MS.gene065816:CDS
TGAGACTCAAATTCCAACAC+AGG 0.582851 1.3:+55926692 None:intergenic
ATGTCAGGTTTCAACACGAA+TGG 0.584244 1.3:+55926761 None:intergenic
AGACATATTTGATAATGCTA+AGG 0.587983 1.3:-55926531 MS.gene065816:CDS
AAACCTGACATTACTGCACC+CGG 0.592592 1.3:-55926749 MS.gene065816:CDS
TTGCCGACCGAATAGCTGCT+GGG 0.596434 1.3:+55926567 None:intergenic
ACCCGGTACTTCGATCTTAG+CGG 0.602662 1.3:-55926732 MS.gene065816:CDS
GTACTTCGATCTTAGCGGCA+TGG 0.611328 1.3:-55926727 MS.gene065816:CDS
GGGTAGTTAAGATCCAAGGA+AGG 0.612984 1.3:+55926305 None:intergenic
TGTTGTTAGAAGTCCTATTG+TGG 0.614388 1.3:-55926012 MS.gene065816:CDS
TACGAATCAACACTAGGTGA+TGG 0.618702 1.3:+55926812 None:intergenic
GCCGCGACACCTGCAACATG+AGG 0.621524 1.3:+55926620 None:intergenic
ATTGGAAGAGGATCTTGTGA+TGG 0.630373 1.3:+55926340 None:intergenic
ATAGTGTGTGAAGACAAGAA+TGG 0.635090 1.3:-55927052 MS.gene065816:CDS
GAACTATACGAATCAACACT+AGG 0.641343 1.3:+55926806 None:intergenic
GCCGCTAAGATCGAAGTACC+GGG 0.646643 1.3:+55926731 None:intergenic
GAGCCCAGCAGCTATTCGGT+CGG 0.647472 1.3:-55926570 MS.gene065816:CDS
TTGATTCGTATAGTTCAAGA+GGG 0.648596 1.3:-55926799 MS.gene065816:CDS
ACAGTTACCAATGTTGGTGA+CGG 0.649485 1.3:-55926218 MS.gene065816:CDS
CAACATCATAAACAAGTCCA+GGG 0.666695 1.3:+55926423 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATTGTTAATCCAATAAA+TGG - chr1.3:55926169-55926188 MS.gene065816:CDS 20.0%
!! ATTTATTGGATTAACAATGA+TGG + chr1.3:55926170-55926189 None:intergenic 20.0%
!! TATGACAAAATTAAAGAAAG+TGG - chr1.3:55927020-55927039 MS.gene065816:CDS 20.0%
!! TGAAAAAAGCAATAAAAGAA+GGG + chr1.3:55926807-55926826 None:intergenic 20.0%
!! TTGAAAAAAGCAATAAAAGA+AGG + chr1.3:55926808-55926827 None:intergenic 20.0%
!!! AATTATTGATTTGGTCAAAT+AGG + chr1.3:55926069-55926088 None:intergenic 20.0%
!!! TTTATTGCTTTTTTCAATGA+TGG - chr1.3:55926811-55926830 MS.gene065816:CDS 20.0%
! GTTCTATGAAATTCTTGTAT+CGG + chr1.3:55926853-55926872 None:intergenic 25.0%
! TTGACAATTTCACCATTTAT+TGG + chr1.3:55926184-55926203 None:intergenic 25.0%
!! AAATTAAAGAAAGTGGCTTT+TGG - chr1.3:55927027-55927046 MS.gene065816:CDS 25.0%
!! CTGCATTCAAATTATTGATT+TGG + chr1.3:55926078-55926097 None:intergenic 25.0%
!! TCTTTCATGAAAACAGTTTT+TGG - chr1.3:55926247-55926266 MS.gene065816:CDS 25.0%
!!! AGACATATTTGATAATGCTA+AGG - chr1.3:55926558-55926577 MS.gene065816:CDS 25.0%
! ATGATGGAAATTCTTCTTCA+AGG - chr1.3:55926827-55926846 MS.gene065816:CDS 30.0%
! CATTAAACACCAACTTGTTT+GGG + chr1.3:55926954-55926973 None:intergenic 30.0%
! TCATTAAACACCAACTTGTT+TGG + chr1.3:55926955-55926974 None:intergenic 30.0%
! TTGAATGCAGCAAAAGTTTT+TGG - chr1.3:55926088-55926107 MS.gene065816:CDS 30.0%
! TTGATTCGTATAGTTCAAGA+GGG - chr1.3:55926290-55926309 MS.gene065816:CDS 30.0%
! TTTTGGATATCTAACATGGA+TGG - chr1.3:55927044-55927063 MS.gene065816:CDS 30.0%
AAGGAACACATCAAAGACAT+TGG - chr1.3:55926577-55926596 MS.gene065816:CDS 35.0%
ACGAATGGACAACTATATGA+TGG + chr1.3:55926316-55926335 None:intergenic 35.0%
AGAAGCTAAGCTACAAATTG+AGG - chr1.3:55926983-55927002 MS.gene065816:CDS 35.0%
AGCGAATTCAATGTGATAAG+TGG - chr1.3:55926430-55926449 MS.gene065816:CDS 35.0%
ATAGTGTGTGAAGACAAGAA+TGG - chr1.3:55926037-55926056 MS.gene065816:CDS 35.0%
CAACATCATAAACAAGTCCA+GGG + chr1.3:55926669-55926688 None:intergenic 35.0%
CATAGAACAGTTACCAATGT+TGG - chr1.3:55926865-55926884 MS.gene065816:CDS 35.0%
CTAGCATTGCACCAATTAAA+GGG - chr1.3:55926911-55926930 MS.gene065816:CDS 35.0%
GAACTATACGAATCAACACT+AGG + chr1.3:55926286-55926305 None:intergenic 35.0%
TGTGATAAGTGGAACATCTA+TGG - chr1.3:55926441-55926460 MS.gene065816:CDS 35.0%
TGTTGTTAGAAGTCCTATTG+TGG - chr1.3:55927077-55927096 MS.gene065816:CDS 35.0%
! CTAGAATTTCAATTTGAGGC+TGG + chr1.3:55927106-55927125 None:intergenic 35.0%
! TGGCTTTTGGATATCTAACA+TGG - chr1.3:55927040-55927059 MS.gene065816:CDS 35.0%
! TTTAGAGCAATCATTGGAAG+AGG + chr1.3:55926764-55926783 None:intergenic 35.0%
!! GTTGATTCGTATAGTTCAAG+AGG - chr1.3:55926289-55926308 MS.gene065816:CDS 35.0%
AGAAGGGTAGTTAAGATCCA+AGG + chr1.3:55926791-55926810 None:intergenic 40.0%
ATGTCAGGTTTCAACACGAA+TGG + chr1.3:55926331-55926350 None:intergenic 40.0%
ATTGGAAGAGGATCTTGTGA+TGG + chr1.3:55926752-55926771 None:intergenic 40.0%
CACTGTTATCCCAAACAAGT+TGG - chr1.3:55926942-55926961 MS.gene065816:CDS 40.0%
CCAACATCATAAACAAGTCC+AGG + chr1.3:55926670-55926689 None:intergenic 40.0%
GCTAGCATTGCACCAATTAA+AGG - chr1.3:55926910-55926929 MS.gene065816:CDS 40.0%
GTGACACGAAACCCTTTAAT+TGG + chr1.3:55926925-55926944 None:intergenic 40.0%
TACGAATCAACACTAGGTGA+TGG + chr1.3:55926280-55926299 None:intergenic 40.0%
TCCAACACAGGAACATTTGT+AGG + chr1.3:55926388-55926407 None:intergenic 40.0%
TGAGACTCAAATTCCAACAC+AGG + chr1.3:55926400-55926419 None:intergenic 40.0%
TGTGAAGACAAGAATGGAAC+TGG - chr1.3:55926043-55926062 MS.gene065816:CDS 40.0%
! ACAGTTACCAATGTTGGTGA+CGG - chr1.3:55926871-55926890 MS.gene065816:CDS 40.0%
! CCTGGACTTGTTTATGATGT+TGG - chr1.3:55926667-55926686 MS.gene065816:CDS 40.0%
! GGAAGGTTTAGAGCAATCAT+TGG + chr1.3:55926770-55926789 None:intergenic 40.0%
! TGAAAGGAGTGCATAGTGAT+TGG - chr1.3:55926497-55926516 MS.gene065816:CDS 40.0%
! TGATTGCTCTAAACCTTCCT+TGG - chr1.3:55926771-55926790 MS.gene065816:CDS 40.0%
AAACCTGACATTACTGCACC+CGG - chr1.3:55926340-55926359 MS.gene065816:CDS 45.0%
GCCTACAAATGTTCCTGTGT+TGG - chr1.3:55926384-55926403 MS.gene065816:CDS 45.0%
GGGTAGTTAAGATCCAAGGA+AGG + chr1.3:55926787-55926806 None:intergenic 45.0%
! AGCAGCAACACCTTTTGCAT+TGG - chr1.3:55926609-55926628 MS.gene065816:CDS 45.0%
! GCAGCAACACCTTTTGCATT+GGG - chr1.3:55926610-55926629 MS.gene065816:CDS 45.0%
ACCCGGTACTTCGATCTTAG+CGG - chr1.3:55926357-55926376 MS.gene065816:CDS 50.0%
ATTGGAGCCCAGCAGCTATT+CGG - chr1.3:55926515-55926534 MS.gene065816:CDS 50.0%
CCAGGGTCAAGTGCTCTATT+AGG + chr1.3:55926652-55926671 None:intergenic 50.0%
GTACTTCGATCTTAGCGGCA+TGG - chr1.3:55926362-55926381 MS.gene065816:CDS 50.0%
TGACCAGCACCCAATGCAAA+AGG + chr1.3:55926622-55926641 None:intergenic 50.0%
TGCCGCTAAGATCGAAGTAC+CGG + chr1.3:55926362-55926381 None:intergenic 50.0%
TGCTTGTCCGTCACCAACAT+TGG + chr1.3:55926881-55926900 None:intergenic 50.0%
TTGAGGCTGGTGACCACAAT+AGG + chr1.3:55927093-55927112 None:intergenic 50.0%
! ACACCTTTTGCATTGGGTGC+TGG - chr1.3:55926616-55926635 MS.gene065816:CDS 50.0%
! CCTAATAGAGCACTTGACCC+TGG - chr1.3:55926649-55926668 MS.gene065816:CDS 50.0%
ATGGCGTGTCCTCATGTTGC+AGG - chr1.3:55926460-55926479 MS.gene065816:CDS 55.0%
ATTGCCGACCGAATAGCTGC+TGG + chr1.3:55926526-55926545 None:intergenic 55.0%
GTACCGGGTGCAGTAATGTC+AGG + chr1.3:55926346-55926365 None:intergenic 55.0%
TTGCCGACCGAATAGCTGCT+GGG + chr1.3:55926525-55926544 None:intergenic 55.0%
! GCCGCTAAGATCGAAGTACC+GGG + chr1.3:55926361-55926380 None:intergenic 55.0%
! TCCTCATGTTGCAGGTGTCG+CGG - chr1.3:55926468-55926487 MS.gene065816:CDS 55.0%
GAGCCCAGCAGCTATTCGGT+CGG - chr1.3:55926519-55926538 MS.gene065816:CDS 60.0%
!! GGTGTCGCGGCGCTTTTGAA+AGG - chr1.3:55926481-55926500 MS.gene065816:CDS 60.0%
GCCGCGACACCTGCAACATG+AGG + chr1.3:55926472-55926491 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 55925986 55927125 55925986 ID=MS.gene065816
chr1.3 mRNA 55925986 55927125 55925986 ID=MS.gene065816.t1;Parent=MS.gene065816
chr1.3 exon 55925986 55927125 55925986 ID=MS.gene065816.t1.exon1;Parent=MS.gene065816.t1
chr1.3 CDS 55925986 55927125 55925986 ID=cds.MS.gene065816.t1;Parent=MS.gene065816.t1
Gene Sequence

>MS.gene065816

ATGGATTTATGTGACAATTTTAATGAATTGAAAAAAGTGAAAAGCAAGATTATAGTGTGTGAAGACAAGAATGGAACTGGCCTATTTGACCAAATCAATAATTTGAATGCAGCAAAAGTTTTTGGAGCTGTTTTGATTTCAAATGTCTCAGACATATTCTATTCACAGAATAGTTTTGCAACCATCATTGTTAATCCAATAAATGGTGAAATTGTCAAAGCTTACATCAAAAGTAGTAACTCTACTTCAATTGCAAGCATGTCTTTCATGAAAACAGTTTTTGGAACTAAACCATCACCTAGTGTTGATTCGTATAGTTCAAGAGGGCCATCATATAGTTGTCCATTCGTGTTGAAACCTGACATTACTGCACCCGGTACTTCGATCTTAGCGGCATGGCCTACAAATGTTCCTGTGTTGGAATTTGAGTCTCAAAAACATTTCAGCGAATTCAATGTGATAAGTGGAACATCTATGGCGTGTCCTCATGTTGCAGGTGTCGCGGCGCTTTTGAAAGGAGTGCATAGTGATTGGAGCCCAGCAGCTATTCGGTCGGCAATAATGACAACATCAGACATATTTGATAATGCTAAGGAACACATCAAAGACATTGGAACAGACAAAGCAGCAACACCTTTTGCATTGGGTGCTGGTCATGTTAATCCTAATAGAGCACTTGACCCTGGACTTGTTTATGATGTTGGTGTACAAGATTATGTGAATCTTCTTTGTGCACTTAAATACTCACAAAAAAACATCACTACCATCACAAGATCCTCTTCCAATGATTGCTCTAAACCTTCCTTGGATCTTAACTACCCTTCTTTTATTGCTTTTTTCAATGATGGAAATTCTTCTTCAAGGCCGATACAAGAATTTCATAGAACAGTTACCAATGTTGGTGACGGACAAGCAATTTATGTTGCTAGCATTGCACCAATTAAAGGGTTTCGTGTCACTGTTATCCCAAACAAGTTGGTGTTTAATGAGAAGAATGAGAAGCTAAGCTACAAATTGAGGATTGAAGTTGCAAGTATGACAAAATTAAAGAAAGTGGCTTTTGGATATCTAACATGGATGGATGTGAAGCATGTTGTTAGAAGTCCTATTGTGGTCACCAGCCTCAAATTGAAATTCTAG

Protein sequence

>MS.gene065816.t1

MDLCDNFNELKKVKSKIIVCEDKNGTGLFDQINNLNAAKVFGAVLISNVSDIFYSQNSFATIIVNPINGEIVKAYIKSSNSTSIASMSFMKTVFGTKPSPSVDSYSSRGPSYSCPFVLKPDITAPGTSILAAWPTNVPVLEFESQKHFSEFNVISGTSMACPHVAGVAALLKGVHSDWSPAAIRSAIMTTSDIFDNAKEHIKDIGTDKAATPFALGAGHVNPNRALDPGLVYDVGVQDYVNLLCALKYSQKNITTITRSSSNDCSKPSLDLNYPSFIAFFNDGNSSSRPIQEFHRTVTNVGDGQAIYVASIAPIKGFRVTVIPNKLVFNEKNEKLSYKLRIEVASMTKLKKVAFGYLTWMDVKHVVRSPIVVTSLKLKF