AlfalfaGEDB | MS.gene78602

M. sativa cultivar XinJiangDaYe / MS.gene78602

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78602.t1	XP_003626291.2	97.7	264	5	1	10	273	586	848	2.10E-142	515.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78602.t1	P73097	33.3	78	50	1	74	151	8	83	4.2e-06	53.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene78602.t1	G7KYP1	97.6	251	5	1	23	273	1	250	2.3e-135	491.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene78602	0.895381	1.01E-75	-1.69E-46
MS.gene049173	MS.gene78602	0.81149	6.82E-51	-1.69E-46
MS.gene049217	MS.gene78602	0.868675	5.47E-66	-1.69E-46
MS.gene049222	MS.gene78602	0.918129	2.28E-86	-1.69E-46
MS.gene049232	MS.gene78602	0.902356	1.05E-78	-1.69E-46
MS.gene049285	MS.gene78602	0.90138	2.84E-78	-1.69E-46
MS.gene049312	MS.gene78602	-0.808304	3.31E-50	-1.69E-46
MS.gene049320	MS.gene78602	0.891107	5.37E-74	-1.69E-46
MS.gene049396	MS.gene78602	0.828283	9.80E-55	-1.69E-46
MS.gene049609	MS.gene78602	0.856378	3.35E-62	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 81 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAACGAATTGCAG+AGG	0.651160	7.1:+2926828	MS.gene78602:CDS
AAAAGCGGCTTTAATTTCGG+CGG	0.695406	7.1:-2926919	None:intergenic
AACAACTGTTTATAGGTCAT+GGG	0.479720	7.1:+2927960	MS.gene78602:intron
AACATGCTGGGTTGAAAATT+TGG	0.174458	7.1:-2928480	None:intergenic
AAGTCGAAGTTGGACACAGT+TGG	0.629994	7.1:+2926699	MS.gene78602:CDS
AATTGCAGAGGCAGAGAAGA+TGG	0.533070	7.1:+2926840	MS.gene78602:CDS
AATTTGTGATGGTGTGTAGT+TGG	0.477410	7.1:-2927255	None:intergenic
ACAACTGTTTATAGGTCATG+GGG	0.627093	7.1:+2927961	MS.gene78602:intron
ACACAGACAAAGGAAAAGTG+CGG	0.720075	7.1:-2926794	None:intergenic
ACAGCACGTGCATCTTCTCA+AGG	0.621543	7.1:+2927779	MS.gene78602:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTCATGTAGTGAGATT+TGG	-	chr7.1:2928810-2928829	None:intergenic	30.0%
AACAACTGTTTATAGGTCAT+GGG	+	chr7.1:2927960-2927979	MS.gene78602:intron	30.0%
AAGAATGAGTGAGTTTAAGA+AGG	-	chr7.1:2927145-2927164	None:intergenic	30.0%
ACATAATGAATGCAACTTCT+CGG	-	chr7.1:2928022-2928041	None:intergenic	30.0%
ACTTTGACATAATCTTCCTT+AGG	-	chr7.1:2928990-2929009	None:intergenic	30.0%
CAAAATAATTCTCTGTGATG+GGG	-	chr7.1:2928047-2928066	None:intergenic	30.0%
CCAAAATAATTCTCTGTGAT+GGG	-	chr7.1:2928048-2928067	None:intergenic	30.0%
CTTTGACATAATCTTCCTTA+GGG	-	chr7.1:2928989-2929008	None:intergenic	30.0%
GAATTTCTCAAAATGAAGGA+AGG	-	chr7.1:2927828-2927847	None:intergenic	30.0%
GTTAATGAGTTTCTTTGTGT+CGG	+	chr7.1:2927439-2927458	MS.gene78602:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	2926665	2929145	2926665	ID=MS.gene78602
chr7.1	mRNA	2926665	2929145	2926665	ID=MS.gene78602.t1;Parent=MS.gene78602
chr7.1	exon	2926665	2926950	2926665	ID=MS.gene78602.t1.exon1;Parent=MS.gene78602.t1
chr7.1	CDS	2926665	2926950	2926665	ID=cds.MS.gene78602.t1;Parent=MS.gene78602.t1
chr7.1	exon	2927039	2927125	2927039	ID=MS.gene78602.t1.exon2;Parent=MS.gene78602.t1
chr7.1	CDS	2927039	2927125	2927039	ID=cds.MS.gene78602.t1;Parent=MS.gene78602.t1
chr7.1	exon	2927248	2927285	2927248	ID=MS.gene78602.t1.exon3;Parent=MS.gene78602.t1
chr7.1	CDS	2927248	2927285	2927248	ID=cds.MS.gene78602.t1;Parent=MS.gene78602.t1
chr7.1	exon	2927387	2927466	2927387	ID=MS.gene78602.t1.exon4;Parent=MS.gene78602.t1
chr7.1	CDS	2927387	2927466	2927387	ID=cds.MS.gene78602.t1;Parent=MS.gene78602.t1
chr7.1	exon	2927717	2927800	2927717	ID=MS.gene78602.t1.exon5;Parent=MS.gene78602.t1
chr7.1	CDS	2927717	2927800	2927717	ID=cds.MS.gene78602.t1;Parent=MS.gene78602.t1
chr7.1	exon	2927975	2928083	2927975	ID=MS.gene78602.t1.exon6;Parent=MS.gene78602.t1
chr7.1	CDS	2927975	2928083	2927975	ID=cds.MS.gene78602.t1;Parent=MS.gene78602.t1
chr7.1	exon	2928373	2928507	2928373	ID=MS.gene78602.t1.exon7;Parent=MS.gene78602.t1
chr7.1	CDS	2928373	2928507	2928373	ID=cds.MS.gene78602.t1;Parent=MS.gene78602.t1
chr7.1	exon	2928615	2928643	2928615	ID=MS.gene78602.t1.exon8;Parent=MS.gene78602.t1
chr7.1	CDS	2928615	2928643	2928615	ID=cds.MS.gene78602.t1;Parent=MS.gene78602.t1
chr7.1	exon	2928940	2929145	2928940	ID=MS.gene78602.t1.exon9;Parent=MS.gene78602.t1
chr7.1	CDS	2928940	2929145	2928940	ID=cds.MS.gene78602.t1;Parent=MS.gene78602.t1

Gene Sequence

>MS.gene78602

AAAATGGTTCACTTCACCCCTCCTATGGGAAAGTAAGTCGAAGTTGGACACAGTTGGTCTTACCATAATGGGATCGTTCAGGTTGTTTAGCTTCAACTTAACAACAACAACAACTTCTATGTTTGTAAACCGCACTTTTCCTTTGTCTGTGTCTTTAAAGAATAAAACAAGAACGAATTGCAGAGGCAGAGAAGATGGTCCTCTGTCCACTTCCTCTGCTTACACCGTCCTCGGAGTCCAACCTAACTGCTCAGCCGCCGAAATTAAAGCCGCTTTTCGATCCAAAGTATCAACATCAATCATTGAATATTTATTCACCATTTTCATTCTCTTCAATTCAATTCAAGTTTCTTTCTCTTTAATTTATTACTTAGGTAAAACAGTTCCATCCAGACCTCAACAGAGATGAAAATGAAACATATTCTGATGCTATGATTCGCCGTGTAATTCAAGCATACCAGGTACTACTTGGTACTTCCTTCTTAAACTCACTCATTCTTTTTCCTATTCACTACCACACATCATATACAGCATAGTAAAGTGTAATTAGTTCATTTTTAACCTTCATGCTTTTTTACTGCAGATACTATCCAACTACACACCATCACAAATTATTGAAACGTAAACTATATGTTCTTTATTCAACTCCGTATTGTTTTGAAATTTACGGTATGCATTCATTCTCTTACAGTTACAATGCCTGCTGACTTTTCACTTTTCAGGGAGTGCTTAGATCCCTTTGACAGACCAGAGTGTGAAGCTTTTGATCTTTTCGTTAATGAGTTTCTTTGTGTCGGCAAAGGTAGGAGTGTGAAGCATCAACACATACACAGACACCTTACATGACATGAAATTATGTAGAGCTCGTAACAATTTAGACCACATATATCGGTGCAGGACACTGCATGCAATGTCCTACACTGGACACACCTTTAATCTGCAAGTGTGGAGCATGCATACATACATATACAATGTCTCAACGTCACTTGGGATGAACAATTTTTATGCTTTTACTTTTCCATTTTACATTGATGAGTTTAAAATCTATGCAGCTTGTTCAAATTCCTGTGTGGAAAGAGCACCTCATGCTTTCACATTTGTCTCTTCAACTGGAACAGCACGTGCATCTTCTCAAGGTTAATTTGTTTTATATATTGTTCCCTTCCTTCATTTTGAGAAATTCATTAATTAAGAATGACATATTGAACTAGATAACTTCGCTTGTTTTAGAAGAGTGCATGTACTCTGCAAATGACATTCTTTTTAATGATTTATTTATGAATACTGCTATCTTCAACAACTGTTTATAGGTCATGGGGAAGACTACCAAGTTCAGTGTGCTGTTGGACAATGCCCGAGAAGTTGCATTCATTATGTAACCCCATCACAGAGAATTATTTTGGAGGAGCTACTTAACAGGTAACATTAACAGCGTTACTCATCCTACAATTTTTATTTTTTTACTTGGTGGGCTGTGGAACAGTTTATCAAATTAATCCCTTTGTCAATATATTATCTTTCTTATAAAACTAAAAGGATACAATACAACCATGCTTAATTTCCCTATTTATCTATTTCTATCATATACTAGCATGCTTTTTTACTTAATCATATAACATATTATTACCTTTTGGAATCATACAATGTTTTTAGAGTTTAACAAGTTCATTCCATTTGATTTCTTATTTCCTTTTTGTTGATGTTTCAGTATAATAGATGCACCCTATGATACATCAGCTGAGGCAGACTTGCTCTATTCACTTATAACCAAAGCTAAGTTTGAGAATAACCGATACCAAAAGCCAAAGAAGAAAACCAAATTTTCAACCCAGCATGTTGACTGGTTTTAGCGTTCCCATGTCTTCACTCCCCAAACTATAGATAGCACTGAGATTGCTGATGAGACAGTCATGGTTCTCAGCCAATAAATTTTTTATGAGCTGCTTATAGGTGCCTTACACCTCAGTATTCTGAAACATGTAAGCTACTTACTACAATCGGGCAATTTTTGTTTCATTTTGTACATCTTATTTTAAGATTTTGCAACGGATGGCGGGGAAGTGGCAGGGGGTTAGTTCTTTCAGTGAATGAATCAAGGGTCTAGATTCACTGTCTACGTGAATGCGTGATACTGCAGGTAATCCAAATCTCACTACATGACTTTTCCTTGTGGAAATGACGAAAAATTGCAAGTCTATATGATTTCTAATTTTTCCTGCCATGGCGTTTAAATCCTTTAGTCAGAGGGAGTAGCTGTGTTTGATAACACTTGCAGGTGGTGAATATATCATTGACCATGCTAATACTGCTGCCTGGAGTAACCCTAAGGAAGATTATGTCAAAGTCAATTGTGATGGTTCTGTGGTTGACTTTGGGATCAAGGCATATACTGTGGTGGTGTGTGTGCTACGGATGAATTTGGTGTTTGGTTTCTCTATGGCTCTTGACTCTTATTCCATCATTGTGGTTGTATTACGTTAA

Protein sequence

>MS.gene78602.t1

KMVHFTPPMGKUVEVGHSWSYHNGIVQVVULQLNNNNNFYVCKPHFSFVCVFKEUNKNELQRQRRWSSVHFLCLHRPRSPTULLSRRNUSRFSIQSKTVPSRPQQRUKUNIFUCYDSPCNSSIPDTIQLHTITNYUNGVLRSLUQTRVUSFUSFRUUVSLCRQSLFKFLCGKSTSCFHICLFNWNSTCIFSRSWGRLPSSVCCWTMPEKLHSLCNPITENYFGGATUQYNRCTLUYISUGRLALFTYNQSUVUEUPIPKAKEENQIFNPACULVPYTSVFUNMWUIYHUPCUYCCLEUPUGRLCQSQLUWFCGULWDQGIYCGGVCATDEFGVWFLYGSULLFHHCGCITL