AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70171


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70171.t1 MTR_8g094730 97.770 538 12 0 1 538 1 538 0.0 1080
MS.gene70171.t1 MTR_8g094730 97.732 529 12 0 1 529 1 529 0.0 1063
MS.gene70171.t1 MTR_8g094730 97.577 454 11 0 1 454 1 454 0.0 914
MS.gene70171.t1 MTR_8g094730 97.537 406 10 0 133 538 16 421 0.0 807
MS.gene70171.t1 MTR_8g094730 97.205 322 9 0 133 454 16 337 0.0 642
MS.gene70171.t1 MTR_5g071250 24.017 458 291 14 83 512 62 490 9.73e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70171.t1 AT5G08740 69.508 528 149 4 6 533 4 519 0.0 724
MS.gene70171.t1 AT2G29990 23.750 480 267 18 82 512 68 497 5.24e-13 72.0

Find 150 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTCGCGTGCGCCTTTA+TGG 0.082619 4.1:+7850433 None:intergenic
ACTTTACTGGTTGGAATCTC+TGG 0.185179 4.1:-7846819 MS.gene70171:CDS
AGCTTATCCAAGGTCCTTTC+AGG 0.225073 4.1:-7846253 MS.gene70171:CDS
TTTCAAAATCAAGCCCTTTA+GGG 0.262475 4.1:+7847232 None:intergenic
GTGGTTTATACACTGCTTTA+AGG 0.264318 4.1:-7850258 MS.gene70171:CDS
CAACAATAGCCACACTAATT+TGG 0.273192 4.1:+7848542 None:intergenic
TCCTCGCTTCTCGGATTTGC+TGG 0.287439 4.1:-7849309 MS.gene70171:CDS
CAACTGCCCCACCTGGCAAT+AGG 0.294931 4.1:-7848420 MS.gene70171:CDS
CAATAAAAGTTCAACCTTCC+TGG 0.296221 4.1:+7847308 None:intergenic
TTGAAGCAGATCTGGTATTA+TGG 0.306218 4.1:-7847158 MS.gene70171:CDS
TTGGCGACTCTTCGGCATTA+AGG 0.308386 4.1:-7847002 MS.gene70171:CDS
TAAATGCAACAATACCTAAA+TGG 0.323836 4.1:+7846769 None:intergenic
TTTGCAGCCCTCTGATCATT+TGG 0.324220 4.1:-7849246 MS.gene70171:CDS
ATTGTTGGTTGTGGTTACTC+TGG 0.332921 4.1:-7848526 MS.gene70171:CDS
TTTCAACAAGCAGACTTTAC+TGG 0.336665 4.1:-7846832 MS.gene70171:CDS
AAGCCTAGAGTGTGTATATT+AGG 0.338679 4.1:-7850292 MS.gene70171:CDS
CGCGTGCGCCTTTATGGTTT+CGG 0.344516 4.1:+7850439 None:intergenic
GCCAGGCTGGTTCTTGCATT+GGG 0.348821 4.1:-7848792 MS.gene70171:intron
TTGCAGCCCTCTGATCATTT+GGG 0.350700 4.1:-7849245 MS.gene70171:CDS
CAAACCTCCTCTTCCTCATC+TGG 0.371516 4.1:-7847124 MS.gene70171:CDS
ATCTGTTTCCGCCTGTCCCC+TGG 0.375897 4.1:+7847065 None:intergenic
TGATTCAGTGTCATTGCTAC+AGG 0.378729 4.1:-7846278 MS.gene70171:CDS
TGTATATTAGGTGGTGGATT+TGG 0.380492 4.1:-7850280 MS.gene70171:CDS
AGATTCAAAACCTTGTTATC+AGG 0.382308 4.1:+7850404 None:intergenic
TATTGCCAGGTGGGGCAGTT+GGG 0.386526 4.1:+7848422 None:intergenic
CTCTGCATTCCTCTTTCAGC+AGG 0.386784 4.1:+7847189 None:intergenic
AATCTCTGGGCTGCAATCAA+TGG 0.389937 4.1:-7846805 MS.gene70171:CDS
TGGCGACTCTTCGGCATTAA+GGG 0.395361 4.1:-7847001 MS.gene70171:CDS
GAAGGCCCTGTTGGCCATGC+TGG 0.395735 4.1:-7846492 MS.gene70171:intron
CTATTGCCAGGTGGGGCAGT+TGG 0.396647 4.1:+7848421 None:intergenic
CTGTTGTACGAGCTTCTATC+TGG 0.397092 4.1:-7849438 MS.gene70171:CDS
GCACGCTGTTTCCGAGCAAT+TGG 0.397470 4.1:-7850577 MS.gene70171:CDS
TTGTTGGTTGTGGTTACTCT+GGG 0.401241 4.1:-7848525 MS.gene70171:CDS
CAGATGAGGAAGAGGAGGTT+TGG 0.401952 4.1:+7847125 None:intergenic
TCTGTTAGAGTTAGCGAATA+AGG 0.405168 4.1:+7850532 None:intergenic
GACATACCAGCATGGCCAAC+AGG 0.406929 4.1:+7846486 None:intergenic
AACTGCCCCACCTGGCAATA+GGG 0.412773 4.1:-7848419 MS.gene70171:CDS
ATCTCTGGGCTGCAATCAAT+GGG 0.414491 4.1:-7846804 MS.gene70171:CDS
GTTGACGGGTTAACTTTAGA+AGG 0.421479 4.1:-7846510 MS.gene70171:CDS
GACTTAAAGTGGGGATCAGC+TGG 0.431359 4.1:-7846318 MS.gene70171:CDS
AGCCAGGCTGGTTCTTGCAT+TGG 0.434279 4.1:-7848793 MS.gene70171:intron
CCTAGGTGAGATGATGACTT+TGG 0.435731 4.1:-7846565 MS.gene70171:CDS
GGAAATAGCTCCTCGCTTCT+CGG 0.435859 4.1:-7849318 MS.gene70171:CDS
CAAATTAGTGTGGCTATTGT+TGG 0.436374 4.1:-7848541 MS.gene70171:CDS
TAAAATCATTGAAGCAGATC+TGG 0.437055 4.1:-7847166 MS.gene70171:CDS
TTTATACACTGCTTTAAGGT+TGG 0.446666 4.1:-7850254 MS.gene70171:CDS
AGTGCGGCTTCCCTATTGCC+AGG 0.447110 4.1:+7848409 None:intergenic
CTAGGTGAGATGATGACTTT+GGG 0.448931 4.1:-7846564 MS.gene70171:CDS
TTGTTATTCCACTTAATGCC+AGG 0.455065 4.1:-7847083 MS.gene70171:CDS
ATATTAGGTGGTGGATTTGG+TGG 0.456796 4.1:-7850277 MS.gene70171:CDS
TCCACTTAATGCCAGGGGAC+AGG 0.458352 4.1:-7847076 MS.gene70171:CDS
GGCATACAGAAGTGGATGAA+TGG 0.460524 4.1:-7849340 MS.gene70171:intron
GAGTCTTCAAATACCCCTAA+AGG 0.464234 4.1:-7847246 MS.gene70171:CDS
TCTGATCATTTGGGAGTGAA+TGG 0.473130 4.1:-7849236 MS.gene70171:CDS
TTAAGTCTATGTTCATCTGT+TGG 0.475750 4.1:+7846334 None:intergenic
GCATACAGAAGTGGATGAAT+GGG 0.477197 4.1:-7849339 MS.gene70171:intron
CGGCTTCCCTATTGCCAGGT+GGG 0.481731 4.1:+7848413 None:intergenic
TCGGCATTAAGGGATTCAAA+TGG 0.483378 4.1:-7846991 MS.gene70171:CDS
ATCTGCCCAACTGCCCCACC+TGG 0.484822 4.1:-7848427 MS.gene70171:CDS
ATTTGAAGACTCGGATTCAC+TGG 0.484905 4.1:+7847257 None:intergenic
AATCACACCTGTGCAGTGGC+TGG 0.485252 4.1:+7846958 None:intergenic
TCGCTAACTCTAACAGAAAA+CGG 0.486414 4.1:-7850526 MS.gene70171:CDS
CTTTACTGGTTGGAATCTCT+GGG 0.486432 4.1:-7846818 MS.gene70171:CDS
ACAGAAAACGGTCACAGTTA+CGG 0.490644 4.1:-7850514 MS.gene70171:CDS
GCAGAGCGATTACAAAATAG+AGG 0.492310 4.1:-7848481 MS.gene70171:CDS
AGTCTTCAAATACCCCTAAA+GGG 0.493513 4.1:-7847245 MS.gene70171:CDS
TGAGATATCCGAAACCATAA+AGG 0.495837 4.1:-7850447 MS.gene70171:CDS
GCTAAACTCGATGTTGTACC+AGG 0.502423 4.1:-7848762 MS.gene70171:CDS
GCATTAAGTGGAATAACAAA+TGG 0.503930 4.1:+7847087 None:intergenic
AGATGAACATAGACTTAAAG+TGG 0.505486 4.1:-7846329 MS.gene70171:CDS
ACCAGTCGTATTCGATATGA+AGG 0.509210 4.1:+7849168 None:intergenic
GATGTTAGGTTCTTTCATCC+AGG 0.510559 4.1:-7847326 MS.gene70171:intron
GATCTGGTATTATGGACTGT+TGG 0.515253 4.1:-7847150 MS.gene70171:CDS
GAATATTCCAGATGAGGAAG+AGG 0.518477 4.1:+7847117 None:intergenic
ATTGCGAATTCTGTTGCTCC+TGG 0.520933 4.1:+7848744 None:intergenic
GCCTGTCCCCTGGCATTAAG+TGG 0.521000 4.1:+7847075 None:intergenic
AACGAGATGTGGAGCCTGAA+AGG 0.521656 4.1:+7846239 None:intergenic
TCGGATTTGCTGGCCAACAC+TGG 0.522334 4.1:-7849299 MS.gene70171:CDS
TTTAGGGGTATTTGAAGACT+CGG 0.527030 4.1:+7847248 None:intergenic
AGTGTGGCTATTGTTGGTTG+TGG 0.531139 4.1:-7848535 MS.gene70171:CDS
CCACTGCTTCTCCAATTGCT+CGG 0.538365 4.1:+7850566 None:intergenic
TTTCTTGTGGCCTGATAACA+AGG 0.538451 4.1:-7850414 MS.gene70171:intron
AGATGAAACTCTTCGTGTCA+AGG 0.547174 4.1:-7847046 MS.gene70171:CDS
AGAGAGAAAGACCTTTGGTA+AGG 0.548355 4.1:-7848569 MS.gene70171:CDS
AACAAGCAGACTTTACTGGT+TGG 0.550481 4.1:-7846828 MS.gene70171:CDS
GGAAGATAGCTTATTTGATG+AGG 0.553016 4.1:-7846360 MS.gene70171:CDS
ATATTAGAGAGAAAGACCTT+TGG 0.555077 4.1:-7848574 MS.gene70171:CDS
GATGAAACTCTTCGTGTCAA+GGG 0.555719 4.1:-7847045 MS.gene70171:CDS
GGCTTCCCTATTGCCAGGTG+GGG 0.559815 4.1:+7848414 None:intergenic
AGCGACGAGGGAGGGTGATG+CGG 0.561412 4.1:+7850730 None:intergenic
TGTGGAGCCTGAAAGGACCT+TGG 0.563985 4.1:+7846246 None:intergenic
ACACCTGTGCAGTGGCTGGA+AGG 0.565625 4.1:+7846962 None:intergenic
GAGCTACAACCTGCTGAAAG+AGG 0.565752 4.1:-7847198 MS.gene70171:CDS
GGAACTGTTCATCTTGAAAG+TGG 0.567235 4.1:-7849191 MS.gene70171:CDS
ACATTAATCTGAACGAGATG+TGG 0.567900 4.1:+7846228 None:intergenic
CGGTGAAAAGCGACGAGGGA+GGG 0.568243 4.1:+7850722 None:intergenic
TTCAAAATCAAGCCCTTTAG+GGG 0.568506 4.1:+7847233 None:intergenic
GATCCTTCCAGCCACTGCAC+AGG 0.568939 4.1:-7846965 MS.gene70171:intron
AATTCCTTTCTCAACTCTAG+AGG 0.569459 4.1:-7848724 MS.gene70171:CDS
CCACCTAATATACACACTCT+AGG 0.574182 4.1:+7850289 None:intergenic
TTAGAGTTAGCGAATAAGGA+TGG 0.575525 4.1:+7850536 None:intergenic
TCCTCCACGAGTAGATGCGT+TGG 0.578649 4.1:+7849211 None:intergenic
CCGAGCAATTGGAGAAGCAG+TGG 0.580290 4.1:-7850566 MS.gene70171:CDS
TGGCGGCAATGGTGGTGTTG+TGG 0.580456 4.1:-7850471 MS.gene70171:CDS
TGTTATTCCACTTAATGCCA+GGG 0.583658 4.1:-7847082 MS.gene70171:CDS
TATTAGGTGGAGCGAAACAA+TGG 0.584420 4.1:-7850601 MS.gene70171:intron
TTCACTCCCAAATGATCAGA+GGG 0.584604 4.1:+7849239 None:intergenic
AGAGTGTGTATATTAGGTGG+TGG 0.586393 4.1:-7850286 MS.gene70171:CDS
TTAGGTTCTTTCATCCAGGA+AGG 0.591528 4.1:-7847322 MS.gene70171:intron
TTAACTTTAGAAGGCCCTGT+TGG 0.591640 4.1:-7846501 MS.gene70171:CDS
AGGCGCACGCGAATTTCTTG+TGG 0.592198 4.1:-7850427 MS.gene70171:CDS
CCTAGAGTGTGTATATTAGG+TGG 0.592356 4.1:-7850289 MS.gene70171:CDS
GTATCCTCTAGAGTTGAGAA+AGG 0.594472 4.1:+7848720 None:intergenic
TATTCCAGATGAGGAAGAGG+AGG 0.595878 4.1:+7847120 None:intergenic
CAATACCTAAATGGCAAAAG+CGG 0.596219 4.1:+7846778 None:intergenic
GATTCAGTGTCATTGCTACA+GGG 0.598405 4.1:-7846277 MS.gene70171:CDS
GATGAACATAGACTTAAAGT+GGG 0.599056 4.1:-7846328 MS.gene70171:CDS
GCCTTCATATCGAATACGAC+TGG 0.600408 4.1:-7849169 MS.gene70171:intron
TAAGGTTGGAATCACTTGAG+TGG 0.605311 4.1:-7850240 MS.gene70171:CDS
GATTGCTCTTGTCGATCAGT+CGG 0.605749 4.1:-7849481 MS.gene70171:CDS
GGATCCAACGCATCTACTCG+TGG 0.606457 4.1:-7849215 MS.gene70171:CDS
GCGGCTTCCCTATTGCCAGG+TGG 0.610654 4.1:+7848412 None:intergenic
ACGTCTGAATATTCCAGATG+AGG 0.622457 4.1:+7847111 None:intergenic
GTTAACCCGTCAACAAAACT+CGG 0.627560 4.1:+7846519 None:intergenic
GTTATTCCACTTAATGCCAG+GGG 0.629610 4.1:-7847081 MS.gene70171:CDS
TTGTACGAGCTTCTATCTGG+TGG 0.632413 4.1:-7849435 MS.gene70171:intron
AATTTGGTAGTCCTTACCAA+AGG 0.634405 4.1:+7848558 None:intergenic
ATAAAATCACACCTGTGCAG+TGG 0.635822 4.1:+7846954 None:intergenic
CCAAAGTCATCATCTCACCT+AGG 0.637173 4.1:+7846565 None:intergenic
CGCCAAGAGAAAATATCCGT+GGG 0.637875 4.1:+7847019 None:intergenic
TTCGTGTCAAGGGTCACCCA+CGG 0.639355 4.1:-7847035 MS.gene70171:CDS
ACTTAATGCCAGGGGACAGG+CGG 0.639559 4.1:-7847073 MS.gene70171:CDS
GCTACAGGGTAGCTTATCCA+AGG 0.640522 4.1:-7846263 MS.gene70171:CDS
ATTCACTCCCAAATGATCAG+AGG 0.641958 4.1:+7849238 None:intergenic
ACATACCAGCATGGCCAACA+GGG 0.645026 4.1:+7846487 None:intergenic
TCGCCAAGAGAAAATATCCG+TGG 0.650910 4.1:+7847018 None:intergenic
CATTAAGGGATTCAAATGGA+AGG 0.654908 4.1:-7846987 MS.gene70171:CDS
GCCAGCAAATCCGAGAAGCG+AGG 0.660195 4.1:+7849308 None:intergenic
GGTGCTAGGTTTCAGAACCT+AGG 0.660523 4.1:-7846582 MS.gene70171:intron
GGAATCACTTGAGTGGCCTG+AGG 0.667970 4.1:-7850233 MS.gene70171:CDS
CGTACGGTGAAAAGCGACGA+GGG 0.670353 4.1:+7850718 None:intergenic
TAAACAACTTACTTTCAGTG+CGG 0.685597 4.1:+7848393 None:intergenic
AACATATGGACATACCAGCA+TGG 0.686693 4.1:+7846478 None:intergenic
GATAGAAGCTCGTACAACAG+TGG 0.692798 4.1:+7849441 None:intergenic
TGTTGGTTGTGGTTACTCTG+GGG 0.696184 4.1:-7848524 MS.gene70171:CDS
TAAGGACTACCAAATTAGTG+TGG 0.709566 4.1:-7848551 MS.gene70171:CDS
TCCAACGCATCTACTCGTGG+AGG 0.710371 4.1:-7849212 MS.gene70171:CDS
GCGTACGGTGAAAAGCGACG+AGG 0.714060 4.1:+7850717 None:intergenic
ACGGTGAAAAGCGACGAGGG+AGG 0.717450 4.1:+7850721 None:intergenic
ATGAACATAGACTTAAAGTG+GGG 0.729556 4.1:-7846327 MS.gene70171:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATAAAAATTTAAA+CGG - chr4.1:7849066-7849085 MS.gene70171:intron 0.0%
!! AAAATTTCTTACAATAATAT+TGG + chr4.1:7849604-7849623 None:intergenic 10.0%
!! AATATAAATTTCAAATTACA+AGG + chr4.1:7849094-7849113 None:intergenic 10.0%
!! AATATGAATTATTATGTATA+AGG + chr4.1:7849336-7849355 None:intergenic 10.0%
!!! CTTTATTTTATCTTTTATTA+TGG - chr4.1:7847215-7847234 MS.gene70171:CDS 10.0%
!!! GTTTTGATTTTTTTTTAATA+TGG - chr4.1:7849126-7849145 MS.gene70171:intron 10.0%
!!! TCTTATTAATGTTTTTAATA+GGG + chr4.1:7850562-7850581 None:intergenic 10.0%
!!! TTCTTATTAATGTTTTTAAT+AGG + chr4.1:7850563-7850582 None:intergenic 10.0%
!! ATTTAAGGACTTAAATTTAA+TGG + chr4.1:7849574-7849593 None:intergenic 15.0%
!! ATTTACAAGTAAAAAATAGA+TGG + chr4.1:7848093-7848112 None:intergenic 15.0%
!! TTTACAAGTAAAAAATAGAT+GGG + chr4.1:7848092-7848111 None:intergenic 15.0%
!!! AATATTGGTAATGAAATTTA+AGG + chr4.1:7849589-7849608 None:intergenic 15.0%
!!! ACATTTTTTTTTCATCTATT+AGG - chr4.1:7846363-7846382 MS.gene70171:CDS 15.0%
!!! AGTTTTTATTTGCTAATAAA+AGG - chr4.1:7850236-7850255 MS.gene70171:CDS 15.0%
!!! GTTTTTATTTGCTAATAAAA+GGG - chr4.1:7850237-7850256 MS.gene70171:CDS 15.0%
!!! TGATTTTGAAAAGTATATAT+TGG - chr4.1:7849760-7849779 MS.gene70171:intron 15.0%
!! AACACTATTTATTCTTAATC+TGG - chr4.1:7850376-7850395 MS.gene70171:intron 20.0%
!! ACACTATTTATTCTTAATCT+GGG - chr4.1:7850377-7850396 MS.gene70171:intron 20.0%
!! ACCTACTCATAAAAATTATT+TGG - chr4.1:7849274-7849293 MS.gene70171:CDS 20.0%
!! AGTTTAAATTTAATGCTTTC+TGG - chr4.1:7848611-7848630 MS.gene70171:intron 20.0%
!! ATTGTAATGATTAGAGTTTA+TGG - chr4.1:7847996-7848015 MS.gene70171:intron 20.0%
!! CAATTACAAAATTAAACTGT+AGG - chr4.1:7849220-7849239 MS.gene70171:CDS 20.0%
!! GATTAAGAATAAATAGTGTT+AGG + chr4.1:7850376-7850395 None:intergenic 20.0%
!! TTGAAAGTAATTGTTAAAAG+AGG + chr4.1:7846323-7846342 None:intergenic 20.0%
!! TTGTAATGATTAGAGTTTAT+GGG - chr4.1:7847997-7848016 MS.gene70171:intron 20.0%
!!! AATAAGTTAAAAACAGCTTT+TGG + chr4.1:7847134-7847153 None:intergenic 20.0%
!!! AATGTGATTATTTGTTGTTT+GGG - chr4.1:7848894-7848913 MS.gene70171:intron 20.0%
!!! ATAGAATTCCTTATTTGATA+TGG - chr4.1:7847472-7847491 MS.gene70171:intron 20.0%
!!! ATATTTATTGATTTCACATG+CGG - chr4.1:7848348-7848367 MS.gene70171:intron 20.0%
!!! TCCAAATAATTTTTATGAGT+AGG + chr4.1:7849278-7849297 None:intergenic 20.0%
!!! TTATCTTTTATTATGGAAGT+AGG - chr4.1:7847222-7847241 MS.gene70171:CDS 20.0%
!!! TTTTTTACTTGTAAATGAAG+TGG - chr4.1:7848097-7848116 MS.gene70171:intron 20.0%
!!! TTTTTTTTTCATCTATTAGG+TGG - chr4.1:7846366-7846385 MS.gene70171:CDS 20.0%
! AAATGCAACCTACAAATTTA+AGG + chr4.1:7850131-7850150 None:intergenic 25.0%
! AACTTGTCTTGACATATAAT+TGG + chr4.1:7848950-7848969 None:intergenic 25.0%
! AATCTGTTCCATATCAAATA+AGG + chr4.1:7847483-7847502 None:intergenic 25.0%
! ACTTGTCTTGACATATAATT+GGG + chr4.1:7848949-7848968 None:intergenic 25.0%
! AGAGAAAAACATATCATCTT+AGG + chr4.1:7847900-7847919 None:intergenic 25.0%
! ATTTCAGAATACTACAACAT+AGG + chr4.1:7848030-7848049 None:intergenic 25.0%
! GATAAAATGGTGTGATAAAA+TGG - chr4.1:7846881-7846900 MS.gene70171:intron 25.0%
! GATTAAGCAGATTTACATTA+TGG - chr4.1:7847619-7847638 MS.gene70171:intron 25.0%
! GGCTAATGCTTATATAATTT+AGG + chr4.1:7849401-7849420 None:intergenic 25.0%
! GGTCAATTATTTAATATCTC+AGG - chr4.1:7848306-7848325 MS.gene70171:intron 25.0%
! GTATCTAATCTTATAGTACT+AGG - chr4.1:7850056-7850075 MS.gene70171:intron 25.0%
! GTATGGTTTAGAAATCTATT+TGG - chr4.1:7847026-7847045 MS.gene70171:CDS 25.0%
! TAAGAATAAACTTAAGAGTG+TGG + chr4.1:7847977-7847996 None:intergenic 25.0%
! TATAAAACATAATTGATGCC+CGG + chr4.1:7847872-7847891 None:intergenic 25.0%
! TTAAAATTCTGCTATGCAAT+GGG + chr4.1:7846941-7846960 None:intergenic 25.0%
! TTAGAAACATTAAACAAGAC+CGG + chr4.1:7849189-7849208 None:intergenic 25.0%
! TTGCAAAAGAACAAAATACA+TGG + chr4.1:7847341-7847360 None:intergenic 25.0%
!! AAGATGATATGTTTTTCTCT+GGG - chr4.1:7847900-7847919 MS.gene70171:intron 25.0%
!! ACTGTTTTCCTTAAATTTGT+AGG - chr4.1:7850120-7850139 MS.gene70171:intron 25.0%
!! GAAATTTTATGATCTCTGAA+AGG - chr4.1:7849616-7849635 MS.gene70171:intron 25.0%
!! GTATCTAAAATATCTGCTAA+AGG - chr4.1:7848058-7848077 MS.gene70171:intron 25.0%
!! TAAGATGATATGTTTTTCTC+TGG - chr4.1:7847899-7847918 MS.gene70171:intron 25.0%
!!! ATTCAGTTTTTTCTAGCTTA+TGG - chr4.1:7846809-7846828 MS.gene70171:CDS 25.0%
!!! CAATGTGATTATTTGTTGTT+TGG - chr4.1:7848893-7848912 MS.gene70171:intron 25.0%
!!! GTTATTTTGTCAACTGTATT+CGG - chr4.1:7849696-7849715 MS.gene70171:intron 25.0%
!!! TATTTATTGATTTCACATGC+GGG - chr4.1:7848349-7848368 MS.gene70171:intron 25.0%
AAACTGTTTGGGAGAATTTA+TGG - chr4.1:7847090-7847109 MS.gene70171:CDS 30.0%
AAGCATTTGTGAAACTGTTT+GGG - chr4.1:7847079-7847098 MS.gene70171:CDS 30.0%
AATCATAGGTCATAATTGCA+TGG - chr4.1:7846999-7847018 MS.gene70171:CDS 30.0%
AATGTTAAAACACTTACCTG+CGG + chr4.1:7846781-7846800 None:intergenic 30.0%
AATTATCGAGTCTTTCTAAG+AGG + chr4.1:7849017-7849036 None:intergenic 30.0%
AGATGAACATAGACTTAAAG+TGG - chr4.1:7850651-7850670 MS.gene70171:intron 30.0%
AGTAGGTTAAAGTAGTGTTT+AGG + chr4.1:7849261-7849280 None:intergenic 30.0%
ATATTAGAGAGAAAGACCTT+TGG - chr4.1:7848406-7848425 MS.gene70171:CDS 30.0%
ATGAACATAGACTTAAAGTG+GGG - chr4.1:7850653-7850672 MS.gene70171:intron 30.0%
ATTGATCTAGGTGTGAAAAA+TGG - chr4.1:7847937-7847956 MS.gene70171:intron 30.0%
CAGTTGTCAAATAAAGATGA+TGG + chr4.1:7850104-7850123 None:intergenic 30.0%
CATCTTCAAACATAAAGCTT+TGG + chr4.1:7848808-7848827 None:intergenic 30.0%
CCATATTCTTTAGCAATATG+GGG - chr4.1:7849161-7849180 MS.gene70171:intron 30.0%
GATGAACATAGACTTAAAGT+GGG - chr4.1:7850652-7850671 MS.gene70171:intron 30.0%
GCATTAAGTGGAATAACAAA+TGG + chr4.1:7849896-7849915 None:intergenic 30.0%
GCCATATTCTTTAGCAATAT+GGG - chr4.1:7849160-7849179 MS.gene70171:intron 30.0%
GTGATGGTTAAAATAGCATT+CGG + chr4.1:7849467-7849486 None:intergenic 30.0%
GTGTTTAGGAAAATTCAACT+AGG + chr4.1:7849247-7849266 None:intergenic 30.0%
GTTAAAATTCTGCTATGCAA+TGG + chr4.1:7846942-7846961 None:intergenic 30.0%
GTTTCCAGCATAATAAAGAA+TGG + chr4.1:7850540-7850559 None:intergenic 30.0%
TAAAATCATTGAAGCAGATC+TGG - chr4.1:7849814-7849833 MS.gene70171:intron 30.0%
TAAAATTCTGCTATGCAATG+GGG + chr4.1:7846940-7846959 None:intergenic 30.0%
TAAACAACTTACTTTCAGTG+CGG + chr4.1:7848590-7848609 None:intergenic 30.0%
TAAGCATTTGTGAAACTGTT+TGG - chr4.1:7847078-7847097 MS.gene70171:CDS 30.0%
TGATAAACACCTATGCTATT+AGG - chr4.1:7847264-7847283 MS.gene70171:CDS 30.0%
TTAAGTCTATGTTCATCTGT+TGG + chr4.1:7850649-7850668 None:intergenic 30.0%
TTGATCTAGGTGTGAAAAAT+GGG - chr4.1:7847938-7847957 MS.gene70171:intron 30.0%
TTGATGCAAAATCCAATGAT+AGG - chr4.1:7846835-7846854 MS.gene70171:CDS 30.0%
TTTCAAAATCAAGCCCTTTA+GGG + chr4.1:7849751-7849770 None:intergenic 30.0%
! AATGTGAATATGATAGTGTG+TGG + chr4.1:7846348-7846367 None:intergenic 30.0%
! AGATTCAAAACCTTGTTATC+AGG + chr4.1:7846579-7846598 None:intergenic 30.0%
! AGGAAGGTTGAACTTTTATT+GGG - chr4.1:7849674-7849693 MS.gene70171:intron 30.0%
! AGGACTATACATGTTTTCTT+AGG + chr4.1:7848997-7849016 None:intergenic 30.0%
! ATATCTATTTTGTACAGCCT+TGG - chr4.1:7848641-7848660 MS.gene70171:intron 30.0%
! TTTTCAAAATCAAGCCCTTT+AGG + chr4.1:7849752-7849771 None:intergenic 30.0%
!! AAAATGGTGTTGTCAAATAG+CGG - chr4.1:7846897-7846916 MS.gene70171:intron 30.0%
!! AACTTGAGCACTTAGTTTTT+AGG + chr4.1:7848871-7848890 None:intergenic 30.0%
!! TTTATACACTGCTTTAAGGT+TGG - chr4.1:7846726-7846745 MS.gene70171:intron 30.0%
AAAACCAGGATTACAAGTGA+TGG + chr4.1:7849483-7849502 None:intergenic 35.0%
AAAAGGGAAAAAAGCCAATC+TGG - chr4.1:7850253-7850272 MS.gene70171:CDS 35.0%
AACATTATGCTGTGGATGTT+AGG - chr4.1:7849640-7849659 MS.gene70171:intron 35.0%
AAGCCTAGAGTGTGTATATT+AGG - chr4.1:7846688-7846707 MS.gene70171:intron 35.0%
AATTCCTTTCTCAACTCTAG+AGG - chr4.1:7848256-7848275 MS.gene70171:intron 35.0%
ACTGATGTAGCATTCAATCA+TGG + chr4.1:7849422-7849441 None:intergenic 35.0%
AGTCTTCAAATACCCCTAAA+GGG - chr4.1:7849735-7849754 MS.gene70171:intron 35.0%
ATACATGGAAGCTTATCATG+TGG + chr4.1:7847326-7847345 None:intergenic 35.0%
CAAATTAGTGTGGCTATTGT+TGG - chr4.1:7848439-7848458 MS.gene70171:CDS 35.0%
CAACAATAGCCACACTAATT+TGG + chr4.1:7848441-7848460 None:intergenic 35.0%
CAATAAAAGTTCAACCTTCC+TGG + chr4.1:7849675-7849694 None:intergenic 35.0%
CAATACCTAAATGGCAAAAG+CGG + chr4.1:7850205-7850224 None:intergenic 35.0%
CATGCCATTCTTTATTATGC+TGG - chr4.1:7850533-7850552 MS.gene70171:CDS 35.0%
CATTAAGGGATTCAAATGGA+AGG - chr4.1:7849993-7850012 MS.gene70171:intron 35.0%
CCCCATATTGCTAAAGAATA+TGG + chr4.1:7849164-7849183 None:intergenic 35.0%
CGCCATATTCTTTAGCAATA+TGG - chr4.1:7849159-7849178 MS.gene70171:intron 35.0%
CGGTATTTCAATTTCATCCT+GGG + chr4.1:7849447-7849466 None:intergenic 35.0%
GAGTGAAGTCAGATATTTAG+AGG - chr4.1:7848782-7848801 MS.gene70171:CDS 35.0%
GCTGCTGTAGTTTAAGAAAA+GGG + chr4.1:7849536-7849555 None:intergenic 35.0%
GGAAGATAGCTTATTTGATG+AGG - chr4.1:7850620-7850639 MS.gene70171:intron 35.0%
GGCATCATTAATCTTAAGCA+AGG + chr4.1:7848976-7848995 None:intergenic 35.0%
GGTATTTCAATTTCATCCTG+GGG + chr4.1:7849446-7849465 None:intergenic 35.0%
GTGGTTTATACACTGCTTTA+AGG - chr4.1:7846722-7846741 MS.gene70171:intron 35.0%
TAAGGACTACCAAATTAGTG+TGG - chr4.1:7848429-7848448 MS.gene70171:CDS 35.0%
TACATGGAAGCTTATCATGT+GGG + chr4.1:7847325-7847344 None:intergenic 35.0%
TACATTATGGCATACAGAAG+TGG - chr4.1:7847632-7847651 MS.gene70171:intron 35.0%
TCCAATGATAGGAGTAACTT+AGG - chr4.1:7846846-7846865 MS.gene70171:intron 35.0%
TCCTAAGTTACTCCTATCAT+TGG + chr4.1:7846850-7846869 None:intergenic 35.0%
TCGCTAACTCTAACAGAAAA+CGG - chr4.1:7846454-7846473 MS.gene70171:intron 35.0%
TCGGTATTTCAATTTCATCC+TGG + chr4.1:7849448-7849467 None:intergenic 35.0%
TCTGTTAGAGTTAGCGAATA+AGG + chr4.1:7846451-7846470 None:intergenic 35.0%
TGAAAGGAAACATTATGCTG+TGG - chr4.1:7849632-7849651 MS.gene70171:intron 35.0%
TGAGATATCCGAAACCATAA+AGG - chr4.1:7846533-7846552 MS.gene70171:CDS 35.0%
TGCTGCTGTAGTTTAAGAAA+AGG + chr4.1:7849537-7849556 None:intergenic 35.0%
TGTTATTCCACTTAATGCCA+GGG - chr4.1:7849898-7849917 MS.gene70171:intron 35.0%
TTAACCATCACTTGTAATCC+TGG - chr4.1:7849476-7849495 MS.gene70171:CDS 35.0%
TTAGAGTTAGCGAATAAGGA+TGG + chr4.1:7846447-7846466 None:intergenic 35.0%
TTATTCTTAATCTGGGTGCT+AGG - chr4.1:7850384-7850403 MS.gene70171:intron 35.0%
TTCAAAATCAAGCCCTTTAG+GGG + chr4.1:7849750-7849769 None:intergenic 35.0%
TTGAAGCAGATCTGGTATTA+TGG - chr4.1:7849822-7849841 MS.gene70171:intron 35.0%
TTTCAACAAGCAGACTTTAC+TGG - chr4.1:7850148-7850167 MS.gene70171:intron 35.0%
! AATTTGGTAGTCCTTACCAA+AGG + chr4.1:7848425-7848444 None:intergenic 35.0%
! CAGGAAGGTTGAACTTTTAT+TGG - chr4.1:7849673-7849692 MS.gene70171:intron 35.0%
! GAAGCTTTAACAACAAAACC+AGG + chr4.1:7849497-7849516 None:intergenic 35.0%
! GAGCATCTTCGTTGATAAAA+TGG - chr4.1:7846868-7846887 MS.gene70171:intron 35.0%
! TGATATGTTTTTCTCTGGGT+TGG - chr4.1:7847904-7847923 MS.gene70171:intron 35.0%
! TTGGGTTGTTTATCCAAAGA+CGG - chr4.1:7847290-7847309 MS.gene70171:CDS 35.0%
! TTGTTATTCCACTTAATGCC+AGG - chr4.1:7849897-7849916 MS.gene70171:intron 35.0%
! TTTTGTCAACTGTATTCGGA+TGG - chr4.1:7849700-7849719 MS.gene70171:intron 35.0%
!! CTTATTTCTATAAGCTCTCC+AGG - chr4.1:7847148-7847167 MS.gene70171:CDS 35.0%
!! GTTGTTTTCATAAGCTATCC+TGG + chr4.1:7847169-7847188 None:intergenic 35.0%
!! TGTATATTAGGTGGTGGATT+TGG - chr4.1:7846700-7846719 MS.gene70171:intron 35.0%
!! TTTAGGGGTATTTGAAGACT+CGG + chr4.1:7849735-7849754 None:intergenic 35.0%
!!! ATTTCTCCGAGTTTTGTTGA+CGG - chr4.1:7850455-7850474 MS.gene70171:CDS 35.0%
!!! CTTTTTCTGTTTTTGCAGCT+AGG - chr4.1:7850599-7850618 MS.gene70171:intron 35.0%
AACAAGCAGACTTTACTGGT+TGG - chr4.1:7850152-7850171 MS.gene70171:intron 40.0%
AACATATGGACATACCAGCA+TGG + chr4.1:7850505-7850524 None:intergenic 40.0%
ACAGAAAACGGTCACAGTTA+CGG - chr4.1:7846466-7846485 MS.gene70171:intron 40.0%
ACCAGTCGTATTCGATATGA+AGG + chr4.1:7847815-7847834 None:intergenic 40.0%
ACCTATGCTATTAGGTGCTT+GGG - chr4.1:7847272-7847291 MS.gene70171:CDS 40.0%
ACGTCTGAATATTCCAGATG+AGG + chr4.1:7849872-7849891 None:intergenic 40.0%
AGAGAGAAAGACCTTTGGTA+AGG - chr4.1:7848411-7848430 MS.gene70171:CDS 40.0%
AGAGTGTGTATATTAGGTGG+TGG - chr4.1:7846694-7846713 MS.gene70171:intron 40.0%
AGATGAAACTCTTCGTGTCA+AGG - chr4.1:7849934-7849953 MS.gene70171:intron 40.0%
ATAAAATCACACCTGTGCAG+TGG + chr4.1:7850029-7850048 None:intergenic 40.0%
ATTCACTCCCAAATGATCAG+AGG + chr4.1:7847745-7847764 None:intergenic 40.0%
ATTTGAAGACTCGGATTCAC+TGG + chr4.1:7849726-7849745 None:intergenic 40.0%
CATAATTGCATGGTGAGGTA+TGG - chr4.1:7847009-7847028 MS.gene70171:CDS 40.0%
CCACCTAATATACACACTCT+AGG + chr4.1:7846694-7846713 None:intergenic 40.0%
CCTAGAGTGTGTATATTAGG+TGG - chr4.1:7846691-7846710 MS.gene70171:intron 40.0%
CGATTGACGACACTAATCAT+AGG - chr4.1:7846985-7847004 MS.gene70171:CDS 40.0%
CTAGGTGAGATGATGACTTT+GGG - chr4.1:7850416-7850435 MS.gene70171:CDS 40.0%
GAAAAGGGATAATTGCATGC+TGG + chr4.1:7849521-7849540 None:intergenic 40.0%
GAATATTCCAGATGAGGAAG+AGG + chr4.1:7849866-7849885 None:intergenic 40.0%
GAGTCTTCAAATACCCCTAA+AGG - chr4.1:7849734-7849753 MS.gene70171:intron 40.0%
GATGAAACTCTTCGTGTCAA+GGG - chr4.1:7849935-7849954 MS.gene70171:intron 40.0%
GATGTTAGGTTCTTTCATCC+AGG - chr4.1:7849654-7849673 MS.gene70171:intron 40.0%
GCAGAGCGATTACAAAATAG+AGG - chr4.1:7848499-7848518 MS.gene70171:CDS 40.0%
GCATACAGAAGTGGATGAAT+GGG - chr4.1:7847641-7847660 MS.gene70171:intron 40.0%
GCTAAAGAATATGGCGAACA+TGG + chr4.1:7849155-7849174 None:intergenic 40.0%
GGAACTGTTCATCTTGAAAG+TGG - chr4.1:7847789-7847808 MS.gene70171:intron 40.0%
GGCATGTAAGACCAAACATA+TGG + chr4.1:7850519-7850538 None:intergenic 40.0%
GGTGTTCTGCATATTGATCT+AGG - chr4.1:7847925-7847944 MS.gene70171:intron 40.0%
GTTAACCCGTCAACAAAACT+CGG + chr4.1:7850464-7850483 None:intergenic 40.0%
GTTATTCCACTTAATGCCAG+GGG - chr4.1:7849899-7849918 MS.gene70171:intron 40.0%
TAAGGTTGGAATCACTTGAG+TGG - chr4.1:7846740-7846759 MS.gene70171:intron 40.0%
TAAGTCGCATCACAGTGAAT+GGG + chr4.1:7847401-7847420 None:intergenic 40.0%
TAGGTCATAATTGCATGGTG+AGG - chr4.1:7847004-7847023 MS.gene70171:CDS 40.0%
TATTAGGTGGAGCGAAACAA+TGG - chr4.1:7846379-7846398 MS.gene70171:intron 40.0%
TCGGCATTAAGGGATTCAAA+TGG - chr4.1:7849989-7850008 MS.gene70171:intron 40.0%
TCTGATCATTTGGGAGTGAA+TGG - chr4.1:7847744-7847763 MS.gene70171:intron 40.0%
TCTTTAGCAATATGGGGATC+CGG - chr4.1:7849167-7849186 MS.gene70171:intron 40.0%
TGCTGGTATGTCCATATGTT+TGG - chr4.1:7850505-7850524 MS.gene70171:CDS 40.0%
TTAAGTCGCATCACAGTGAA+TGG + chr4.1:7847402-7847421 None:intergenic 40.0%
TTAGGTTCTTTCATCCAGGA+AGG - chr4.1:7849658-7849677 MS.gene70171:intron 40.0%
TTCACTCCCAAATGATCAGA+GGG + chr4.1:7847744-7847763 None:intergenic 40.0%
TTGCTTTGCACTTCTCTCTA+TGG - chr4.1:7848688-7848707 MS.gene70171:intron 40.0%
TTGTCAAATAGCGGCTATAG+TGG - chr4.1:7846906-7846925 MS.gene70171:intron 40.0%
TTTCTTGTGGCCTGATAACA+AGG - chr4.1:7846566-7846585 MS.gene70171:CDS 40.0%
! ACAGTTACGGTTTTTCGCTT+CGG - chr4.1:7846479-7846498 MS.gene70171:intron 40.0%
! ACTTTACTGGTTGGAATCTC+TGG - chr4.1:7850161-7850180 MS.gene70171:intron 40.0%
! AGAAGTGCAAAGCAACATTG+TGG + chr4.1:7848683-7848702 None:intergenic 40.0%
! ATTGTTGGTTGTGGTTACTC+TGG - chr4.1:7848454-7848473 MS.gene70171:CDS 40.0%
! ATTTTCTCTTGGCGACTCTT+CGG - chr4.1:7849970-7849989 MS.gene70171:intron 40.0%
! CTTTACTGGTTGGAATCTCT+GGG - chr4.1:7850162-7850181 MS.gene70171:intron 40.0%
! GATCTGGTATTATGGACTGT+TGG - chr4.1:7849830-7849849 MS.gene70171:intron 40.0%
! GATTCAGTGTCATTGCTACA+GGG - chr4.1:7850703-7850722 MS.gene70171:intron 40.0%
! GGACTTTTATAGGACCAGAT+TGG + chr4.1:7850270-7850289 None:intergenic 40.0%
! TGATTCAGTGTCATTGCTAC+AGG - chr4.1:7850702-7850721 MS.gene70171:intron 40.0%
! TTAACTTTAGAAGGCCCTGT+TGG - chr4.1:7850479-7850498 MS.gene70171:CDS 40.0%
! TTGTTGGTTGTGGTTACTCT+GGG - chr4.1:7848455-7848474 MS.gene70171:CDS 40.0%
! TTTCTGCACTTGTTGCTTCT+CGG - chr4.1:7847432-7847451 MS.gene70171:intron 40.0%
! TTTTCATTTCTTCGACAGCC+AGG - chr4.1:7848171-7848190 MS.gene70171:intron 40.0%
! TTTTTCGCTTCGGGCAAAAA+TGG - chr4.1:7846489-7846508 MS.gene70171:intron 40.0%
!! ATATTAGGTGGTGGATTTGG+TGG - chr4.1:7846703-7846722 MS.gene70171:intron 40.0%
!! CGCTATGATGGGACTTTTAT+AGG + chr4.1:7850280-7850299 None:intergenic 40.0%
!! GTATCCTCTAGAGTTGAGAA+AGG + chr4.1:7848263-7848282 None:intergenic 40.0%
!! GTTGACGGGTTAACTTTAGA+AGG - chr4.1:7850470-7850489 MS.gene70171:CDS 40.0%
!!! TTTCTCCGAGTTTTGTTGAC+GGG - chr4.1:7850456-7850475 MS.gene70171:CDS 40.0%
AATCTCTGGGCTGCAATCAA+TGG - chr4.1:7850175-7850194 MS.gene70171:intron 45.0%
ACCCAAGCACCTAATAGCAT+AGG + chr4.1:7847276-7847295 None:intergenic 45.0%
AGCTTATCCAAGGTCCTTTC+AGG - chr4.1:7850727-7850746 MS.gene70171:CDS 45.0%
ATCTCTGGGCTGCAATCAAT+GGG - chr4.1:7850176-7850195 MS.gene70171:intron 45.0%
ATGCACTGTTTAAGTCCCTC+AGG - chr4.1:7847842-7847861 MS.gene70171:intron 45.0%
ATTGCGAATTCTGTTGCTCC+TGG + chr4.1:7848239-7848258 None:intergenic 45.0%
ATTGTGGACCATCACCTAGT+TGG + chr4.1:7848667-7848686 None:intergenic 45.0%
CAAAAACTGCACACCAGTGT+TGG + chr4.1:7847697-7847716 None:intergenic 45.0%
CACCTATGCTATTAGGTGCT+TGG - chr4.1:7847271-7847290 MS.gene70171:CDS 45.0%
CCAAAGTCATCATCTCACCT+AGG + chr4.1:7850418-7850437 None:intergenic 45.0%
CCTAGGTGAGATGATGACTT+TGG - chr4.1:7850415-7850434 MS.gene70171:CDS 45.0%
CGCCAAGAGAAAATATCCGT+GGG + chr4.1:7849964-7849983 None:intergenic 45.0%
CTGTTGTACGAGCTTCTATC+TGG - chr4.1:7847542-7847561 MS.gene70171:intron 45.0%
GATAGAAGCTCGTACAACAG+TGG + chr4.1:7847542-7847561 None:intergenic 45.0%
GATTGCTCTTGTCGATCAGT+CGG - chr4.1:7847499-7847518 MS.gene70171:intron 45.0%
GCCTTCATATCGAATACGAC+TGG - chr4.1:7847811-7847830 MS.gene70171:intron 45.0%
GCGTAAGTGCAATGAAGGAT+GGG - chr4.1:7848285-7848304 MS.gene70171:intron 45.0%
GCTAAACTCGATGTTGTACC+AGG - chr4.1:7848218-7848237 MS.gene70171:intron 45.0%
GCTTATCATGTGGGTGAGTT+AGG + chr4.1:7847316-7847335 None:intergenic 45.0%
GGCATACAGAAGTGGATGAA+TGG - chr4.1:7847640-7847659 MS.gene70171:intron 45.0%
TACACGCGTAAGTGCAATGA+AGG - chr4.1:7848280-7848299 MS.gene70171:intron 45.0%
TATTCCAGATGAGGAAGAGG+AGG + chr4.1:7849863-7849882 None:intergenic 45.0%
TCCCATCATAGCGATCTTCA+GGG - chr4.1:7850287-7850306 MS.gene70171:CDS 45.0%
TCCCTGAAGATCGCTATGAT+GGG + chr4.1:7850291-7850310 None:intergenic 45.0%
TCGCAGATAGAGGAAGATAG+AGG + chr4.1:7846968-7846987 None:intergenic 45.0%
TCGCCAAGAGAAAATATCCG+TGG + chr4.1:7849965-7849984 None:intergenic 45.0%
TGCACTGTTTAAGTCCCTCA+GGG - chr4.1:7847843-7847862 MS.gene70171:intron 45.0%
TTCCCTGAAGATCGCTATGA+TGG + chr4.1:7850292-7850311 None:intergenic 45.0%
TTGCACTTCTCTCTATGGCA+AGG - chr4.1:7848693-7848712 MS.gene70171:intron 45.0%
TTGCAGCCCTCTGATCATTT+GGG - chr4.1:7847735-7847754 MS.gene70171:intron 45.0%
TTGTACGAGCTTCTATCTGG+TGG - chr4.1:7847545-7847564 MS.gene70171:intron 45.0%
TTTGCAGCCCTCTGATCATT+TGG - chr4.1:7847734-7847753 MS.gene70171:intron 45.0%
! AGTGTGGCTATTGTTGGTTG+TGG - chr4.1:7848445-7848464 MS.gene70171:CDS 45.0%
! CACCCACGGATATTTTCTCT+TGG - chr4.1:7849959-7849978 MS.gene70171:intron 45.0%
! CAGTTACGGTTTTTCGCTTC+GGG - chr4.1:7846480-7846499 MS.gene70171:intron 45.0%
! CTTAAGAGTGTGGTCACTGA+AGG + chr4.1:7847967-7847986 None:intergenic 45.0%
! GAAGAGAAAGAAAGCGCGTA+CGG + chr4.1:7846281-7846300 None:intergenic 45.0%
! TGTTGGTTGTGGTTACTCTG+GGG - chr4.1:7848456-7848475 MS.gene70171:CDS 45.0%
! TTCTGCACTTGTTGCTTCTC+GGG - chr4.1:7847433-7847452 MS.gene70171:intron 45.0%
! TTTAAGTCCCTCAGGGTATC+CGG - chr4.1:7847850-7847869 MS.gene70171:intron 45.0%
!!! ACCTGCGGTTTTTTATCCTC+AGG + chr4.1:7846766-7846785 None:intergenic 45.0%
!!! ATTTTTATAAAAATTTAAAC+GGG - chr4.1:7849067-7849086 MS.gene70171:intron 5.0%
!!! TTAAATTTTTATAAAAATAC+AGG + chr4.1:7849065-7849084 None:intergenic 5.0%
AACGAGATGTGGAGCCTGAA+AGG + chr4.1:7850744-7850763 None:intergenic 50.0%
ACACACTCTAGGCTTCTGCA+AGG + chr4.1:7846683-7846702 None:intergenic 50.0%
ACATACCAGCATGGCCAACA+GGG + chr4.1:7850496-7850515 None:intergenic 50.0%
CAAACCTCCTCTTCCTCATC+TGG - chr4.1:7849856-7849875 MS.gene70171:intron 50.0%
CACACTCTAGGCTTCTGCAA+GGG + chr4.1:7846682-7846701 None:intergenic 50.0%
CAGATGAGGAAGAGGAGGTT+TGG + chr4.1:7849858-7849877 None:intergenic 50.0%
CCACTGCTTCTCCAATTGCT+CGG + chr4.1:7846417-7846436 None:intergenic 50.0%
CGCGTAAGTGCAATGAAGGA+TGG - chr4.1:7848284-7848303 MS.gene70171:intron 50.0%
CTCTGCATTCCTCTTTCAGC+AGG + chr4.1:7849794-7849813 None:intergenic 50.0%
GAAATTCGCGTGCGCCTTTA+TGG + chr4.1:7846550-7846569 None:intergenic 50.0%
GACTTAAAGTGGGGATCAGC+TGG - chr4.1:7850662-7850681 MS.gene70171:intron 50.0%
GAGCTACAACCTGCTGAAAG+AGG - chr4.1:7849782-7849801 MS.gene70171:intron 50.0%
GCCTGAGGATAAAAAACCGC+AGG - chr4.1:7846762-7846781 MS.gene70171:intron 50.0%
GCTACAGGGTAGCTTATCCA+AGG - chr4.1:7850717-7850736 MS.gene70171:intron 50.0%
GGAAATAGCTCCTCGCTTCT+CGG - chr4.1:7847662-7847681 MS.gene70171:intron 50.0%
GGTGCTAGGTTTCAGAACCT+AGG - chr4.1:7850398-7850417 MS.gene70171:intron 50.0%
GTCCCATCATAGCGATCTTC+AGG - chr4.1:7850286-7850305 MS.gene70171:CDS 50.0%
GTGTCGTCAATCGCAGATAG+AGG + chr4.1:7846978-7846997 None:intergenic 50.0%
TGGCGACTCTTCGGCATTAA+GGG - chr4.1:7849979-7849998 MS.gene70171:intron 50.0%
TTCGCTTCGGGCAAAAATGG+CGG - chr4.1:7846492-7846511 MS.gene70171:intron 50.0%
TTGGCGACTCTTCGGCATTA+AGG - chr4.1:7849978-7849997 MS.gene70171:intron 50.0%
TTGTACAGCCTTGGCCAACT+AGG - chr4.1:7848650-7848669 MS.gene70171:intron 50.0%
! TCTGCACTTGTTGCTTCTCG+GGG - chr4.1:7847434-7847453 MS.gene70171:intron 50.0%
! TTAAGTCCCTCAGGGTATCC+GGG - chr4.1:7847851-7847870 MS.gene70171:intron 50.0%
AACTGCCCCACCTGGCAATA+GGG - chr4.1:7848561-7848580 MS.gene70171:CDS 55.0%
AATCACACCTGTGCAGTGGC+TGG + chr4.1:7850025-7850044 None:intergenic 55.0%
ACTTAATGCCAGGGGACAGG+CGG - chr4.1:7849907-7849926 MS.gene70171:intron 55.0%
AGCCTTGGCCAACTAGGTGA+TGG - chr4.1:7848656-7848675 MS.gene70171:intron 55.0%
AGGCGCACGCGAATTTCTTG+TGG - chr4.1:7846553-7846572 MS.gene70171:CDS 55.0%
ATTGATGCCCGGATACCCTG+AGG + chr4.1:7847861-7847880 None:intergenic 55.0%
CATTTCTTCGACAGCCAGGC+TGG - chr4.1:7848175-7848194 MS.gene70171:intron 55.0%
CCGAGCAATTGGAGAAGCAG+TGG - chr4.1:7846414-7846433 MS.gene70171:intron 55.0%
CGCGTGCGCCTTTATGGTTT+CGG + chr4.1:7846544-7846563 None:intergenic 55.0%
CGTACGGTGAAAAGCGACGA+GGG + chr4.1:7846265-7846284 None:intergenic 55.0%
GAATGCTACATCAGTGCCCC+AGG - chr4.1:7849427-7849446 MS.gene70171:intron 55.0%
GACATACCAGCATGGCCAAC+AGG + chr4.1:7850497-7850516 None:intergenic 55.0%
GACCATCACCTAGTTGGCCA+AGG + chr4.1:7848661-7848680 None:intergenic 55.0%
GGAATCACTTGAGTGGCCTG+AGG - chr4.1:7846747-7846766 MS.gene70171:intron 55.0%
GGATCCAACGCATCTACTCG+TGG - chr4.1:7847765-7847784 MS.gene70171:intron 55.0%
GGCAAAAATGGCGGCAATGG+TGG - chr4.1:7846501-7846520 MS.gene70171:CDS 55.0%
TATTGCCAGGTGGGGCAGTT+GGG + chr4.1:7848561-7848580 None:intergenic 55.0%
TCCAACGCATCTACTCGTGG+AGG - chr4.1:7847768-7847787 MS.gene70171:intron 55.0%
TCCACTTAATGCCAGGGGAC+AGG - chr4.1:7849904-7849923 MS.gene70171:intron 55.0%
TCCCAATGCAAGAACCAGCC+TGG + chr4.1:7848192-7848211 None:intergenic 55.0%
TCCTCCACGAGTAGATGCGT+TGG + chr4.1:7847772-7847791 None:intergenic 55.0%
TCCTCGCTTCTCGGATTTGC+TGG - chr4.1:7847671-7847690 MS.gene70171:intron 55.0%
TCGGGCAAAAATGGCGGCAA+TGG - chr4.1:7846498-7846517 MS.gene70171:CDS 55.0%
TGGGTGAGTTAGGCCGTCTT+TGG + chr4.1:7847306-7847325 None:intergenic 55.0%
TGTGGAGCCTGAAAGGACCT+TGG + chr4.1:7850737-7850756 None:intergenic 55.0%
TTCGTGTCAAGGGTCACCCA+CGG - chr4.1:7849945-7849964 MS.gene70171:intron 55.0%
TTGATGCCCGGATACCCTGA+GGG + chr4.1:7847860-7847879 None:intergenic 55.0%
! AGCCAGGCTGGTTCTTGCAT+TGG - chr4.1:7848187-7848206 MS.gene70171:intron 55.0%
! GCACGCTGTTTCCGAGCAAT+TGG - chr4.1:7846403-7846422 MS.gene70171:intron 55.0%
! GCCAGGCTGGTTCTTGCATT+GGG - chr4.1:7848188-7848207 MS.gene70171:intron 55.0%
!! GGCGTCCGCTTTTGCCATTT+AGG - chr4.1:7850197-7850216 MS.gene70171:intron 55.0%
!! TCGGATTTGCTGGCCAACAC+TGG - chr4.1:7847681-7847700 MS.gene70171:intron 55.0%
ACACCTGTGCAGTGGCTGGA+AGG + chr4.1:7850021-7850040 None:intergenic 60.0%
ACGGTGAAAAGCGACGAGGG+AGG + chr4.1:7846262-7846281 None:intergenic 60.0%
AGTGCGGCTTCCCTATTGCC+AGG + chr4.1:7848574-7848593 None:intergenic 60.0%
ATCTGTTTCCGCCTGTCCCC+TGG + chr4.1:7849918-7849937 None:intergenic 60.0%
CAACTGCCCCACCTGGCAAT+AGG - chr4.1:7848560-7848579 MS.gene70171:CDS 60.0%
CGGCTTCCCTATTGCCAGGT+GGG + chr4.1:7848570-7848589 None:intergenic 60.0%
CGGTGAAAAGCGACGAGGGA+GGG + chr4.1:7846261-7846280 None:intergenic 60.0%
CTATTGCCAGGTGGGGCAGT+TGG + chr4.1:7848562-7848581 None:intergenic 60.0%
GATCCTTCCAGCCACTGCAC+AGG - chr4.1:7850015-7850034 MS.gene70171:intron 60.0%
GCCAGCAAATCCGAGAAGCG+AGG + chr4.1:7847675-7847694 None:intergenic 60.0%
GCCTGTCCCCTGGCATTAAG+TGG + chr4.1:7849908-7849927 None:intergenic 60.0%
GCGTACGGTGAAAAGCGACG+AGG + chr4.1:7846266-7846285 None:intergenic 60.0%
GGCTTCCCTATTGCCAGGTG+GGG + chr4.1:7848569-7848588 None:intergenic 60.0%
! TGGCGGCAATGGTGGTGTTG+TGG - chr4.1:7846509-7846528 MS.gene70171:CDS 60.0%
AGCGACGAGGGAGGGTGATG+CGG + chr4.1:7846253-7846272 None:intergenic 65.0%
ATCTGCCCAACTGCCCCACC+TGG - chr4.1:7848553-7848572 MS.gene70171:CDS 65.0%
GAAGGCCCTGTTGGCCATGC+TGG - chr4.1:7850488-7850507 MS.gene70171:CDS 65.0%
GCGGCTTCCCTATTGCCAGG+TGG + chr4.1:7848571-7848590 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 7846231 7850771 7846231 ID=MS.gene70171
chr4.1 mRNA 7846231 7850771 7846231 ID=MS.gene70171.t1;Parent=MS.gene70171
chr4.1 exon 7850723 7850771 7850723 ID=MS.gene70171.t1.exon1;Parent=MS.gene70171.t1
chr4.1 CDS 7850723 7850771 7850723 ID=cds.MS.gene70171.t1;Parent=MS.gene70171.t1
chr4.1 exon 7850415 7850617 7850415 ID=MS.gene70171.t1.exon2;Parent=MS.gene70171.t1
chr4.1 CDS 7850415 7850617 7850415 ID=cds.MS.gene70171.t1;Parent=MS.gene70171.t1
chr4.1 exon 7850219 7850314 7850219 ID=MS.gene70171.t1.exon3;Parent=MS.gene70171.t1
chr4.1 CDS 7850219 7850314 7850219 ID=cds.MS.gene70171.t1;Parent=MS.gene70171.t1
chr4.1 exon 7849436 7849502 7849436 ID=MS.gene70171.t1.exon4;Parent=MS.gene70171.t1
chr4.1 CDS 7849436 7849502 7849436 ID=cds.MS.gene70171.t1;Parent=MS.gene70171.t1
chr4.1 exon 7849170 7849353 7849170 ID=MS.gene70171.t1.exon5;Parent=MS.gene70171.t1
chr4.1 CDS 7849170 7849353 7849170 ID=cds.MS.gene70171.t1;Parent=MS.gene70171.t1
chr4.1 exon 7848716 7848809 7848716 ID=MS.gene70171.t1.exon6;Parent=MS.gene70171.t1
chr4.1 CDS 7848716 7848809 7848716 ID=cds.MS.gene70171.t1;Parent=MS.gene70171.t1
chr4.1 exon 7848405 7848617 7848405 ID=MS.gene70171.t1.exon7;Parent=MS.gene70171.t1
chr4.1 CDS 7848405 7848617 7848405 ID=cds.MS.gene70171.t1;Parent=MS.gene70171.t1
chr4.1 exon 7846966 7847340 7846966 ID=MS.gene70171.t1.exon8;Parent=MS.gene70171.t1
chr4.1 CDS 7846966 7847340 7846966 ID=cds.MS.gene70171.t1;Parent=MS.gene70171.t1
chr4.1 exon 7846784 7846860 7846784 ID=MS.gene70171.t1.exon9;Parent=MS.gene70171.t1
chr4.1 CDS 7846784 7846860 7846784 ID=cds.MS.gene70171.t1;Parent=MS.gene70171.t1
chr4.1 exon 7846493 7846596 7846493 ID=MS.gene70171.t1.exon10;Parent=MS.gene70171.t1
chr4.1 CDS 7846493 7846596 7846493 ID=cds.MS.gene70171.t1;Parent=MS.gene70171.t1
chr4.1 exon 7846231 7846385 7846231 ID=MS.gene70171.t1.exon11;Parent=MS.gene70171.t1
chr4.1 CDS 7846231 7846385 7846231 ID=cds.MS.gene70171.t1;Parent=MS.gene70171.t1
Gene Sequence

>MS.gene70171

ATGTCACACATTGCTTTATCCGCATCACCCTCCCTCGTCGCTTTTCACCGTACGCGCTTTCTTTCTCTTCAATCAAATTATCACTATTTCCTCTTTTAACAATTACTTTCAATACCACACACTATCATATTCACATTTTTTTTTCATCTATTAGGTGGAGCGAAACAATGGAGCACGCTGTTTCCGAGCAATTGGAGAAGCAGTGGAACAAATCCATCCTTATTCGCTAACTCTAACAGAAAACGGTCACAGTTACGGTTTTTCGCTTCGGGCAAAAATGGCGGCAATGGTGGTGTTGTGGATGAGATATCCGAAACCATAAAGGCGCACGCGAATTTCTTGTGGCCTGATAACAAGGTTTTGAATCTTTACATTTTTATTTTTCGATATTGAATTTGTATAGATTTTGATAATTTGTTTGTAATTTTGTGTTTACTCTCTGATTAATCCCTTGCAGAAGCCTAGAGTGTGTATATTAGGTGGTGGATTTGGTGGTTTATACACTGCTTTAAGGTTGGAATCACTTGAGTGGCCTGAGGATAAAAAACCGCAGGTAAGTGTTTTAACATTGAAATTTGATTCAGTTTTTTCTAGCTTATGGAAATTGATGCAAAATCCAATGATAGGAGTAACTTAGGAGCATCTTCGTTGATAAAATGGTGTGATAAAATGGTGTTGTCAAATAGCGGCTATAGTGGCACTATAGCCCCATTGCATAGCAGAATTTTAACAATCCTCTATCTTCCTCTATCTGCGATTGACGACACTAATCATAGGTCATAATTGCATGGTGAGGTATGGTTTAGAAATCTATTTGGATTGACTTATTTGAGATTATCTACAGATATAAGCATTTGTGAAACTGTTTGGGAGAATTTATGGAAACAACTTATGACATGTCCAAAAGCTGTTTTTAACTTATTTCTATAAGCTCTCCAGGATAGCTTATGAAAACAACTTATAGCTTATATGAAGACAGTTTAGCTTTATTTTATCTTTTATTATGGAAGTAGGTTATACATAAACACTTATATGATAAACACCTATGCTATTAGGTGCTTGGGTTGTTTATCCAAAGACGGCCTAACTCACCCACATGATAAGCTTCCATGTATTTTGTTCTTTTGCAAGTTGATTGTACAACTATCATTATGATACTATCTTATACCCATTCACTGTGATGCGACTTAATTGTGTAGCTTTTCTGCACTTGTTGCTTCTCGGGGATGTTTTGAATATTAATAGAATTCCTTATTTGATATGGAACAGATTGCTCTTGTCGATCAGTCGGAACGATTTGTTTTCAAGCCACTGTTGTACGAGCTTCTATCTGGTGGTATGCAGTATTATATTTATGCGACAACTGCAGTTTTCTCTGATTCAAATACGATTAAGCAGATTTACATTATGGCATACAGAAGTGGATGAATGGGAAATAGCTCCTCGCTTCTCGGATTTGCTGGCCAACACTGGTGTGCAGTTTTTGAAAGACAGAGTAAAAGTTTTGCAGCCCTCTGATCATTTGGGAGTGAATGGATCCAACGCATCTACTCGTGGAGGAACTGTTCATCTTGAAAGTGGCCTTCATATCGAATACGACTGGTACAAATTATGCACTGTTTAAGTCCCTCAGGGTATCCGGGCATCAATTATGTTTTATATTCTGCCTAAGATGATATGTTTTTCTCTGGGTTGGTGTTCTGCATATTGATCTAGGTGTGAAAAATGGGTTACCTTCAGTGACCACACTCTTAAGTTTATTCTTATTGTAATGATTAGAGTTTATGGGCAAGATGCCTATGTTGTAGTATTCTGAAATGTTTCTGTGTATCTAAAATATCTGCTAAAGGATAATGAACCCATCTATTTTTTACTTGTAAATGAAGTGGACTGTCAGTGTATAGTGTATAGAATTGTATAGTTTCTATTAATTTGAACATTTTTCATTTCTTCGACAGCCAGGCTGGTTCTTGCATTGGGAGCTGAAGCTAAACTCGATGTTGTACCAGGAGCAACAGAATTCGCAATTCCTTTCTCAACTCTAGAGGATACACGCGTAAGTGCAATGAAGGATGGGTCAATTATTTAATATCTCAGGACTAATATGCAAACTTTATATATTTATTGATTTCACATGCGGGTGTCTTGTTGCAGAAAGTTAACAATAGATTAACAATATTAGAGAGAAAGACCTTTGGTAAGGACTACCAAATTAGTGTGGCTATTGTTGGTTGTGGTTACTCTGGGGTCGAATTAGCTGCAACAGTAGCAGAGCGATTACAAAATAGAGGAATTGTGAGAGCAATTAATGTTGATACAATGATCTGCCCAACTGCCCCACCTGGCAATAGGGAAGCCGCACTGAAAGTAAGTTGTTTAGAGTTTAAATTTAATGCTTTCTGGAACTTGAATATCTATTTTGTACAGCCTTGGCCAACTAGGTGATGGTCCACAATGTTGCTTTGCACTTCTCTCTATGGCAAGGCAGTGAGATATATCGTTTCTCTTTAAATTTTTCTTTTATACAATTTCATGTTGATAAAATGTGATTGAGTGAAGTCAGATATTTAGAGGCCAAAGCTTTATGTTTGAAGATGTTAAATAACATAAAAATTTAAATGTTCTAGTGACTCTAAACCTAAAAACTAAGTGCTCAAGTTTACAATGTGATTATTTGTTGTTTGGGTTGAAGAAATGTATGTATGTATTATGTAACCCAATTATATGTCAAGACAAGTTGATCCTTGCTTAAGATTAATGATGCCTAAGAAAACATGTATAGTCCTCTTAGAAAGACTCGATAATTTATTTGAGCAATTACTCTGTAAGTTCCTGTATTTTTATAAAAATTTAAACGGGTCCTTGTAATTTGAAATTTATATTTAGATCTTCATAGTTTTGATTTTTTTTTAATATGGTCTCCATGTTCGCCATATTCTTTAGCAATATGGGGATCCGGTCTTGTTTAATGTTTCTAAAGTATATCATTCAATTACAAAATTAAACTGTAGGACCTAGTTGAATTTTCCTAAACACTACTTTAACCTACTCATAAAAATTATTTGGAAGAAATTAATTCTGAGAAGTTTGAATACATAATTTCCTTATACATAATAATTCATATTCTCTAACAAACACATTTCAAATTGATCTGTGAATAACTTAAGCCTAAATTATATAAGCATTAGCCATGATTGAATGCTACATCAGTGCCCCAGGATGAAATTGAAATACCGAATGCTATTTTAACCATCACTTGTAATCCTGGTTTTGTTGTTAAAGCTTCTCCAGCATGCAATTATCCCTTTTCTTAAACTACAGCAGCAGTAGTATTTTATTACCATTAAATTTAAGTCCTTAAATTTCATTACCAATATTATTGTAAGAAATTTTATGATCTCTGAAAGGAAACATTATGCTGTGGATGTTAGGTTCTTTCATCCAGGAAGGTTGAACTTTTATTGGGTTATTTTGTCAACTGTATTCGGATGGCCAGTGAATCCGAGTCTTCAAATACCCCTAAAGGGCTTGATTTTGAAAAGTATATATTGGAGCTACAACCTGCTGAAAGAGGAATGCAGAGTAAAATCATTGAAGCAGATCTGGTATTATGGACTGTTGGATCCAAACCTCCTCTTCCTCATCTGGAATATTCAGACGTACCATTTGTTATTCCACTTAATGCCAGGGGACAGGCGGAAACAGATGAAACTCTTCGTGTCAAGGGTCACCCACGGATATTTTCTCTTGGCGACTCTTCGGCATTAAGGGATTCAAATGGAAGGATCCTTCCAGCCACTGCACAGGTGTGATTTTATTGACATCGTATCTAATCTTATAGTACTAGGAAATGTATATATTTTGAGCATACCATCATCTTTATTTGACAACTGTTTTCCTTAAATTTGTAGGTTGCATTTCAACAAGCAGACTTTACTGGTTGGAATCTCTGGGCTGCAATCAATGGGCGTCCGCTTTTGCCATTTAGGTATTGTTGCATTTAGAAGTTTTTATTTGCTAATAAAAGGGAAAAAAGCCAATCTGGTCCTATAAAAGTCCCATCATAGCGATCTTCAGGGAAGTGTCAGACTCAGAAGTTTGTTATTTGCTAATAAATTTGTTTAATTGTTTTGTAATGTACACCTAACACTATTTATTCTTAATCTGGGTGCTAGGTTTCAGAACCTAGGTGAGATGATGACTTTGGGAAGAAATGATGCTGCAATTTCTCCGAGTTTTGTTGACGGGTTAACTTTAGAAGGCCCTGTTGGCCATGCTGGTATGTCCATATGTTTGGTCTTACATGCCATTCTTTATTATGCTGGAAACCCTATTAAAAACATTAATAAGAAGAAAAATAAGCTTGAGCTTTTTCTGTTTTTGCAGCTAGGAAGATAGCTTATTTGATGAGGTTACCAACAGATGAACATAGACTTAAAGTGGGGATCAGCTGGTTTACAAAATCTGCTATTGATTCAGTGTCATTGCTACAGGGTAGCTTATCCAAGGTCCTTTCAGGCTCCACATCTCGTTCAGATTAA

Protein sequence

>MS.gene70171.t1

MSHIALSASPSLVAFHRGAKQWSTLFPSNWRSSGTNPSLFANSNRKRSQLRFFASGKNGGNGGVVDEISETIKAHANFLWPDNKKPRVCILGGGFGGLYTALRLESLEWPEDKKPQIALVDQSERFVFKPLLYELLSGEVDEWEIAPRFSDLLANTGVQFLKDRVKVLQPSDHLGVNGSNASTRGGTVHLESGLHIEYDWLVLALGAEAKLDVVPGATEFAIPFSTLEDTRKVNNRLTILERKTFGKDYQISVAIVGCGYSGVELAATVAERLQNRGIVRAINVDTMICPTAPPGNREAALKVLSSRKVELLLGYFVNCIRMASESESSNTPKGLDFEKYILELQPAERGMQSKIIEADLVLWTVGSKPPLPHLEYSDVPFVIPLNARGQAETDETLRVKGHPRIFSLGDSSALRDSNGRILPATAQVAFQQADFTGWNLWAAINGRPLLPFRFQNLGEMMTLGRNDAAISPSFVDGLTLEGPVGHAARKIAYLMRLPTDEHRLKVGISWFTKSAIDSVSLLQGSLSKVLSGSTSRSD