AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06332


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06332.t1 MTR_3g097290 97.348 528 14 0 1 528 1 528 0.0 1050
MS.gene06332.t1 MTR_8g095320 82.785 517 84 1 12 523 7 523 0.0 872
MS.gene06332.t1 MTR_3g097290 96.316 380 14 0 1 380 1 380 0.0 756
MS.gene06332.t1 MTR_3g104260 73.021 341 92 0 104 444 85 425 0.0 519
MS.gene06332.t1 MTR_4g019850 72.434 341 94 0 104 444 88 428 0.0 516
MS.gene06332.t1 MTR_4g019850 64.232 397 136 2 48 444 49 439 1.53e-180 516
MS.gene06332.t1 MTR_3g104260 70.352 199 59 0 104 302 85 283 1.18e-92 286
MS.gene06332.t1 MTR_4g087690 86.765 68 9 0 407 474 5 72 2.27e-33 122
MS.gene06332.t1 MTR_7g056307 65.217 46 16 0 393 438 88 133 9.25e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06332.t1 AT2G30390 79.258 458 82 3 82 527 56 512 0.0 718
MS.gene06332.t1 AT2G30390 77.564 468 82 4 82 527 56 522 0.0 709
MS.gene06332.t1 AT5G26030 72.700 337 92 0 109 445 84 420 0.0 536
MS.gene06332.t1 AT5G26030 72.700 337 92 0 109 445 84 420 0.0 536

Find 116 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAATGTATTTACCTAAT+TGG 0.166560 3.1:+77618533 None:intergenic
TAGAATCTGGTATAGAAAAT+TGG 0.193496 3.1:-77618349 MS.gene06332:CDS
CGTAGCCTTCTCTGCTCTTT+GGG 0.196098 3.1:+77620851 None:intergenic
CCCAGTTTGTATCTGTTCTA+AGG 0.205657 3.1:-77620876 MS.gene06332:CDS
TGAAGAAAACTAAATATTCT+TGG 0.238006 3.1:+77620910 None:intergenic
TCCCTTCACCCTTGCCTATC+AGG 0.242398 3.1:-77618801 MS.gene06332:intron
GCGTAGCCTTCTCTGCTCTT+TGG 0.271574 3.1:+77620850 None:intergenic
ACTATTGTCTCATCTGTATA+GGG 0.288809 3.1:+77618596 None:intergenic
TGTACGTTGGCATGCGTTAC+TGG 0.292975 3.1:-77619781 MS.gene06332:CDS
TACGGAGGACGCTTGAAATT+AGG 0.301928 3.1:+77623034 None:intergenic
GAATATTATCGCCCTCTCTT+AGG 0.311916 3.1:-77617737 MS.gene06332:CDS
ACCCTCCTTCATTTCTGATT+TGG 0.315714 3.1:-77618300 MS.gene06332:CDS
ACATATTGTGTAGATTAAAA+AGG 0.324340 3.1:-77619491 MS.gene06332:intron
AGAATCTGGTATAGAAAATT+GGG 0.325244 3.1:-77618348 MS.gene06332:CDS
CGGAAGTGTACAAGAGTTAT+TGG 0.329755 3.1:-77617925 MS.gene06332:CDS
AACTATTGTCTCATCTGTAT+AGG 0.332380 3.1:+77618595 None:intergenic
CCCTTAGAACAGATACAAAC+TGG 0.345905 3.1:+77620875 None:intergenic
AGCATATGACTCGCAAAATA+AGG 0.348462 3.1:-77617901 MS.gene06332:CDS
GTATGTTGGCTGTTCCAATT+AGG 0.349234 3.1:-77618547 MS.gene06332:intron
TGATGTTGAATACAAAGAAT+TGG 0.365400 3.1:-77618375 MS.gene06332:CDS
AAAAGTACACTACCTCTTTA+GGG 0.385426 3.1:+77619166 None:intergenic
AGACTTGAAGAAATCTCTTT+CGG 0.388879 3.1:-77619825 MS.gene06332:CDS
AGAAGCGTTGTTGAGTGTAT+AGG 0.390375 3.1:+77623057 None:intergenic
TGGCTCAAGCTTACGTCTAC+TGG 0.395244 3.1:-77619410 MS.gene06332:CDS
CGCCGGTGATAGTGTGGGAA+TGG 0.399628 3.1:-77617869 MS.gene06332:CDS
AAAGAATTGGCTCTAGAATC+TGG 0.400419 3.1:-77618362 MS.gene06332:CDS
GCCGGTGATAGTGTGGGAAT+GGG 0.419183 3.1:-77617868 MS.gene06332:CDS
GTATTACCGGGTCTGCAAAA+AGG 0.425292 3.1:+77621259 None:intergenic
TGCACATCTTCTAGAGTCTC+TGG 0.435104 3.1:+77621297 None:intergenic
CTTACATCTGATGATAAGAT+TGG 0.439061 3.1:-77621345 MS.gene06332:CDS
TCCTCCATCTCTGCCTTGTA+AGG 0.440499 3.1:+77618872 None:intergenic
TTTAGTAGCTCGAACAGATC+AGG 0.450862 3.1:-77621385 MS.gene06332:CDS
CACTGAGGAAGCTATTGAAC+AGG 0.452384 3.1:-77619750 MS.gene06332:intron
TAGGAGGCGGAAGAAGTAGA+AGG 0.462934 3.1:+77623076 None:intergenic
TGGGGTGCCTCTTGCTTATG+TGG 0.465776 3.1:-77618909 MS.gene06332:CDS
TTCTTCTTACAGAGTAGAGT+TGG 0.465830 3.1:-77618638 MS.gene06332:intron
AGCACACAGTATTACCTTCA+TGG 0.466392 3.1:-77619257 MS.gene06332:CDS
CCAGTTTGTATCTGTTCTAA+GGG 0.466703 3.1:-77620875 MS.gene06332:CDS
TGGGGCCGTGTTCCTGCTCT+AGG 0.479445 3.1:-77618329 MS.gene06332:CDS
AGAGAAGGCTACGCTTCAAT+TGG 0.484687 3.1:-77620841 MS.gene06332:CDS
TCAACGTGAAGGATACATAA+AGG 0.485704 3.1:-77619232 MS.gene06332:CDS
ATTGAAAATTGTGGATAAAG+TGG 0.485887 3.1:+77619442 None:intergenic
ATGCCAACGTACACTTCAGC+AGG 0.486817 3.1:+77619791 None:intergenic
TTGAAAATTGTGGATAAAGT+GGG 0.490648 3.1:+77619443 None:intergenic
AAAAGGAGTGAAAAGTATGT+TGG 0.492369 3.1:-77618561 MS.gene06332:CDS
TAGACGTAAGCTTGAGCCAC+TGG 0.492475 3.1:+77619414 None:intergenic
GCCTCTTGCTTATGTGGAAG+AGG 0.493969 3.1:-77618903 MS.gene06332:CDS
TCAATAGCTTCCTCAGTGAA+TGG 0.508166 3.1:+77619755 None:intergenic
CTTCTGCTCTGGAGCTCATG+TGG 0.509145 3.1:-77621532 MS.gene06332:CDS
TTCAAGCCTCGAAGCTCGAC+AGG 0.509317 3.1:-77618231 MS.gene06332:intron
GGTGATAACGTGGCATGAGT+TGG 0.511540 3.1:+77623097 None:intergenic
ATCTGCCAAATCAGAAATGA+AGG 0.511624 3.1:+77618295 None:intergenic
AGAATACCTGTCGAGCTTCG+AGG 0.516022 3.1:+77618225 None:intergenic
TACCTGATAGGCAAGGGTGA+AGG 0.519996 3.1:+77618799 None:intergenic
GCGATCTGAAGCAAAACCCT+TGG 0.524130 3.1:-77621451 MS.gene06332:CDS
GAAGGCTACGCTTCAATTGG+TGG 0.524264 3.1:-77620838 MS.gene06332:CDS
CCCCATTCCCACACTATCAC+CGG 0.525373 3.1:+77617867 None:intergenic
ACCTGATAGGCAAGGGTGAA+GGG 0.530104 3.1:+77618800 None:intergenic
CTCTGCCTTGTAAGGATCAC+CGG 0.531288 3.1:+77618880 None:intergenic
TGGCAGTCTTTGGTTCCGCT+CGG 0.531313 3.1:-77617945 MS.gene06332:intron
GTCTACTGGAGAGTATATTC+CGG 0.534732 3.1:-77619396 MS.gene06332:intron
GCATCAGTTATACGTCTAAG+AGG 0.534824 3.1:+77620808 None:intergenic
GGAGTGTTATTGCTAAACCT+TGG 0.534970 3.1:-77621324 MS.gene06332:CDS
GTGTTATTGCTAAACCTTGG+AGG 0.536763 3.1:-77621321 MS.gene06332:CDS
CTAGAGTCTCTGGACCTCCA+AGG 0.539949 3.1:+77621307 None:intergenic
CTTGCTTATGTGGAAGAGGC+CGG 0.540854 3.1:-77618899 MS.gene06332:CDS
GATGAGACAATAGTTGAACT+TGG 0.541880 3.1:-77618587 MS.gene06332:CDS
TGCCATCGCCGGTGATAGTG+TGG 0.545471 3.1:-77617875 MS.gene06332:CDS
CACATGAGCTCCAGAGCAGA+AGG 0.547619 3.1:+77621533 None:intergenic
TGATCCTTACAAGGCAGAGA+TGG 0.558244 3.1:-77618876 MS.gene06332:CDS
TCTCCCACATGCTGGTGCCA+TGG 0.559559 3.1:-77618258 MS.gene06332:CDS
GTAGCCTTCTCTGCTCTTTG+GGG 0.559986 3.1:+77620852 None:intergenic
CTGCTCTGGAGCTCATGTGG+AGG 0.561511 3.1:-77621529 MS.gene06332:CDS
AGGGCCCCAAAGAGCAGAGA+AGG 0.564829 3.1:-77620856 MS.gene06332:CDS
GAGGGTTCACATCCTAGAGC+AGG 0.569494 3.1:+77618317 None:intergenic
AAAAGTGCTGAAACTTGGAA+TGG 0.570829 3.1:-77617837 MS.gene06332:CDS
AGTGATTGGTTGGAAACCAA+GGG 0.571366 3.1:+77621435 None:intergenic
AAAGGATGGAGTTACAAAGC+TGG 0.574958 3.1:-77619473 MS.gene06332:CDS
GGAATGTGTGGATTTGATCA+TGG 0.578572 3.1:-77618852 MS.gene06332:CDS
GGCTACGCTTCAATTGGTGG+TGG 0.579463 3.1:-77620835 MS.gene06332:CDS
ACAGATACAAACTGGGCCAA+TGG 0.580157 3.1:+77620883 None:intergenic
GGCAGAGATGGAGGAATGTG+TGG 0.580461 3.1:-77618864 MS.gene06332:CDS
AAATAAGGAGTTGCCATCGC+CGG 0.581354 3.1:-77617886 MS.gene06332:CDS
CTGGTTGATATTGAAAATTG+TGG 0.582519 3.1:+77619433 None:intergenic
GAGTGATTGGTTGGAAACCA+AGG 0.584680 3.1:+77621434 None:intergenic
TAGACGTATAACTGATGCAC+AGG 0.586568 3.1:-77620803 MS.gene06332:intron
AGAGGCCGGTGATCCTTACA+AGG 0.588173 3.1:-77618885 MS.gene06332:CDS
ATTGAAAGTCTCCCACATGC+TGG 0.593448 3.1:-77618266 MS.gene06332:CDS
TTCGAGGCTTGAAACTGCCA+TGG 0.598287 3.1:+77618241 None:intergenic
CCGGTGATAGTGTGGGAATG+GGG 0.604868 3.1:-77617867 MS.gene06332:CDS
AGATTCATTCACCTAAGAGA+GGG 0.609385 3.1:+77617726 None:intergenic
TCCCACACTATCACCGGCGA+TGG 0.610674 3.1:+77617873 None:intergenic
GTTGTTGAGTGTATAGGAGG+CGG 0.610694 3.1:+77623063 None:intergenic
GTAGAGTTGGACCTGTGGAA+TGG 0.613496 3.1:-77618625 MS.gene06332:CDS
CCTTCACGTTGATACCATGA+AGG 0.613635 3.1:+77619243 None:intergenic
TCCTTACAAGGCAGAGATGG+AGG 0.613774 3.1:-77618873 MS.gene06332:CDS
GAGATTCATTCACCTAAGAG+AGG 0.614460 3.1:+77617725 None:intergenic
AGCGTTGTTGAGTGTATAGG+AGG 0.618477 3.1:+77623060 None:intergenic
GCCTCTTCCACATAAGCAAG+AGG 0.629638 3.1:+77618902 None:intergenic
CACATCCTAGAGCAGGAACA+CGG 0.630017 3.1:+77618324 None:intergenic
CCTTCATGGTATCAACGTGA+AGG 0.631668 3.1:-77619243 MS.gene06332:CDS
AGGGCGATAATATTCCCCAT+TGG 0.635517 3.1:+77617745 None:intergenic
ACTGCCATGGCACCAGCATG+TGG 0.635936 3.1:+77618254 None:intergenic
TGCCAAATCAGAAATGAAGG+AGG 0.636616 3.1:+77618298 None:intergenic
CCTTAGAACAGATACAAACT+GGG 0.637491 3.1:+77620876 None:intergenic
GCCAAATCAGAAATGAAGGA+GGG 0.639074 3.1:+77618299 None:intergenic
GCCATCGCCGGTGATAGTGT+GGG 0.643544 3.1:-77617874 MS.gene06332:CDS
CTGCCATGGCACCAGCATGT+GGG 0.658693 3.1:+77618255 None:intergenic
TGAGAGGTACAGATTGCCTG+TGG 0.666000 3.1:+77621564 None:intergenic
ACAGAGTAGAGTTGGACCTG+TGG 0.670362 3.1:-77618630 MS.gene06332:intron
GAATCTGGTATAGAAAATTG+GGG 0.677200 3.1:-77618347 MS.gene06332:CDS
GTCCCTGCTGAAGTGTACGT+TGG 0.678902 3.1:-77619794 MS.gene06332:CDS
TGCCAACGTACACTTCAGCA+GGG 0.687637 3.1:+77619792 None:intergenic
AACTCTTGTACACTTCCGAG+CGG 0.698633 3.1:+77617930 None:intergenic
AGAAGTAGAAGGTGATAACG+TGG 0.709400 3.1:+77623087 None:intergenic
TTACTGGCATCCATTCACTG+AGG 0.806235 3.1:-77619765 MS.gene06332:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAGTCATAATCAAA+AGG + chr3.1:77620098-77620117 None:intergenic 15.0%
!! AAGGAAAATAAATAAATAAC+AGG + chr3.1:77620079-77620098 None:intergenic 15.0%
!! AGAAAAAAATAAAATTATCC+TGG - chr3.1:77617946-77617965 MS.gene06332:intron 15.0%
!! ATAGGAAAATAATTATAATC+AGG + chr3.1:77621331-77621350 None:intergenic 15.0%
!! GAATTGTTATAAAAATTAGT+TGG - chr3.1:77618281-77618300 MS.gene06332:CDS 15.0%
!! TTAATAATCAGAATAATATG+TGG - chr3.1:77620434-77620453 MS.gene06332:intron 15.0%
!! TTATGATTTGAATTATGAAT+TGG - chr3.1:77621532-77621551 MS.gene06332:CDS 15.0%
!!! AAAACAACACATTTTTTTTT+TGG + chr3.1:77621759-77621778 None:intergenic 15.0%
!!! AAACAACACATTTTTTTTTT+GGG + chr3.1:77621758-77621777 None:intergenic 15.0%
!!! AATTGAAAGTATATTATCTT+TGG - chr3.1:77622881-77622900 MS.gene06332:intron 15.0%
!!! ATGAATAAATAATCATTTTC+CGG - chr3.1:77618759-77618778 MS.gene06332:intron 15.0%
!!! ATTATTAACATGATTGATTT+TGG + chr3.1:77620422-77620441 None:intergenic 15.0%
!!! TATATTATATTTACTTTTGC+AGG - chr3.1:77619253-77619272 MS.gene06332:CDS 15.0%
!!! TTTTTCAATTAAATTTGACA+TGG + chr3.1:77621640-77621659 None:intergenic 15.0%
!! AAAAGTAACTTCATAATCAT+CGG + chr3.1:77618631-77618650 None:intergenic 20.0%
!! AACTAATGTATTTACCTAAT+TGG + chr3.1:77622316-77622335 None:intergenic 20.0%
!! AATAAATAAATAACAGGAAG+TGG + chr3.1:77620073-77620092 None:intergenic 20.0%
!! AATTGTAAGTTAATCAGATT+AGG - chr3.1:77618663-77618682 MS.gene06332:intron 20.0%
!! ACATATTGTGTAGATTAAAA+AGG - chr3.1:77621355-77621374 MS.gene06332:CDS 20.0%
!! AGATCAAAATGTTAAGTTTA+TGG + chr3.1:77618582-77618601 None:intergenic 20.0%
!! ATTCATGATGAACAAATATT+TGG - chr3.1:77620469-77620488 MS.gene06332:intron 20.0%
!! ATTTGAAGAATATTTAACGT+GGG + chr3.1:77621491-77621510 None:intergenic 20.0%
!! CAATTAAAAGTGATCTAAAA+AGG + chr3.1:77620685-77620704 None:intergenic 20.0%
!! GAAAAAAAAAATTACCTGAT+AGG + chr3.1:77622062-77622081 None:intergenic 20.0%
!! GAATTAATCTTTCTAATATG+GGG - chr3.1:77622812-77622831 MS.gene06332:intron 20.0%
!! GCAAAAAGGTTAAATAAAAA+AGG + chr3.1:77619576-77619595 None:intergenic 20.0%
!! GGAATTAATCTTTCTAATAT+GGG - chr3.1:77622811-77622830 MS.gene06332:intron 20.0%
!! TATCATATTCATATGTTTCA+TGG + chr3.1:77622738-77622757 None:intergenic 20.0%
!! TATTTGAAGAATATTTAACG+TGG + chr3.1:77621492-77621511 None:intergenic 20.0%
!! TGAAGAAAACTAAATATTCT+TGG + chr3.1:77619939-77619958 None:intergenic 20.0%
!! TGATAATTAGTGATAAAATG+TGG + chr3.1:77619208-77619227 None:intergenic 20.0%
!! TGGAATTAATCTTTCTAATA+TGG - chr3.1:77622810-77622829 MS.gene06332:intron 20.0%
!! TGTTAGGATTATTGAATAAA+TGG - chr3.1:77618233-77618252 MS.gene06332:CDS 20.0%
!!! ATGATTATGAAGTTACTTTT+TGG - chr3.1:77618631-77618650 MS.gene06332:intron 20.0%
!!! ATTTTAGTAACAAAGCTAAA+TGG - chr3.1:77617913-77617932 MS.gene06332:CDS 20.0%
!!! CATTTTATCACTAATTATCA+AGG - chr3.1:77619208-77619227 MS.gene06332:CDS 20.0%
!!! CTTTTTAGATCACTTTTAAT+TGG - chr3.1:77620683-77620702 MS.gene06332:intron 20.0%
!!! TAAAAAGGTTTGGTTAATAT+GGG + chr3.1:77620670-77620689 None:intergenic 20.0%
!!! TCTTTTCAATTAGATATAGT+CGG - chr3.1:77622641-77622660 MS.gene06332:intron 20.0%
!!! TGCTTTGTAATCTAAAATAA+AGG - chr3.1:77621243-77621262 MS.gene06332:intron 20.0%
!!! TTGTAGTATTTGATCTATTT+TGG - chr3.1:77622790-77622809 MS.gene06332:intron 20.0%
!!! TTTTTTTTTTGGGCATAAAT+TGG + chr3.1:77621748-77621767 None:intergenic 20.0%
! AAAAGTGATCTAAAAAGGTT+TGG + chr3.1:77620680-77620699 None:intergenic 25.0%
! AACAAAACAAAATACTAGTC+AGG + chr3.1:77622388-77622407 None:intergenic 25.0%
! AACATGTATGTTTAAATCTC+TGG - chr3.1:77622835-77622854 MS.gene06332:intron 25.0%
! AATCATTTCAATCAAGCTTT+CGG - chr3.1:77620854-77620873 MS.gene06332:CDS 25.0%
! ACAAGACTAAAACTAAAACA+AGG + chr3.1:77622774-77622793 None:intergenic 25.0%
! AGAAGATAGAGAAGTAATTA+AGG + chr3.1:77620538-77620557 None:intergenic 25.0%
! AGAATCTGGTATAGAAAATT+GGG - chr3.1:77622498-77622517 MS.gene06332:intron 25.0%
! AGGTAATAATAGAATGAATG+AGG + chr3.1:77620967-77620986 None:intergenic 25.0%
! ATAATCAGAATAATATGTGG+AGG - chr3.1:77620437-77620456 MS.gene06332:intron 25.0%
! ATAGTTGAACTTGGAAAAAA+AGG - chr3.1:77622268-77622287 MS.gene06332:intron 25.0%
! ATATTCAAGCACTAATTTAC+CGG - chr3.1:77618892-77618911 MS.gene06332:CDS 25.0%
! ATTGAAAATTGTGGATAAAG+TGG + chr3.1:77621407-77621426 None:intergenic 25.0%
! ATTGTGTAGATTAAAAAGGA+TGG - chr3.1:77621359-77621378 MS.gene06332:CDS 25.0%
! CAATATAAAAATGCAAGAAG+CGG + chr3.1:77620812-77620831 None:intergenic 25.0%
! CGGTAAAATTAAATTGCTTT+CGG + chr3.1:77620792-77620811 None:intergenic 25.0%
! CTATATATAGAGAGAAGTTA+TGG + chr3.1:77620613-77620632 None:intergenic 25.0%
! GAAGATAGAGAAGTAATTAA+GGG + chr3.1:77620537-77620556 None:intergenic 25.0%
! TAGAATCTGGTATAGAAAAT+TGG - chr3.1:77622497-77622516 MS.gene06332:intron 25.0%
! TCTACACAATATGTTTCAAT+AGG + chr3.1:77621349-77621368 None:intergenic 25.0%
! TGATGTTGAATACAAAGAAT+TGG - chr3.1:77622471-77622490 MS.gene06332:intron 25.0%
! TTAAAATACAAGTCCAATGT+TGG - chr3.1:77620742-77620761 MS.gene06332:intron 25.0%
! TTGAAAATTGTGGATAAAGT+GGG + chr3.1:77621406-77621425 None:intergenic 25.0%
!! CTAAAAAGGTTTGGTTAATA+TGG + chr3.1:77620671-77620690 None:intergenic 25.0%
!! CTATTTAAAGACTTGCTTAT+AGG + chr3.1:77618359-77618378 None:intergenic 25.0%
!! GATTCATGTGATAACAATTT+TGG - chr3.1:77621785-77621804 MS.gene06332:intron 25.0%
!! TGTGTTGTTATAATGAGAAA+CGG + chr3.1:77618859-77618878 None:intergenic 25.0%
!!! ACTTAACATTTTGATCTATG+AGG - chr3.1:77618585-77618604 MS.gene06332:CDS 25.0%
!!! ATGATATTTTTTAGTGCACA+TGG - chr3.1:77621917-77621936 MS.gene06332:intron 25.0%
!!! ATGGATTTTTTTTCTTGAGA+TGG + chr3.1:77618925-77618944 None:intergenic 25.0%
!!! TGATATTTTTTAGTGCACAT+GGG - chr3.1:77621918-77621937 MS.gene06332:intron 25.0%
!!! TGTTTTTAGTCTCAAAAGAT+CGG - chr3.1:77622702-77622721 MS.gene06332:intron 25.0%
!!! TTCTTTGGAATTCAATTGTT+GGG - chr3.1:77618526-77618545 MS.gene06332:intron 25.0%
!!! TTTCTTTGGAATTCAATTGT+TGG - chr3.1:77618525-77618544 MS.gene06332:intron 25.0%
AAAAAATTACCTGATAGGCA+AGG + chr3.1:77622057-77622076 None:intergenic 30.0%
AAAAATTACCTGATAGGCAA+GGG + chr3.1:77622056-77622075 None:intergenic 30.0%
AAAAGATTAAGGACCAAGTT+TGG + chr3.1:77618059-77618078 None:intergenic 30.0%
AACTATTGTCTCATCTGTAT+AGG + chr3.1:77622254-77622273 None:intergenic 30.0%
ACAGCAAAAATGACAATCTT+AGG + chr3.1:77619866-77619885 None:intergenic 30.0%
ACTATTGTCTCATCTGTATA+GGG + chr3.1:77622253-77622272 None:intergenic 30.0%
AGACTTGAAGAAATCTCTTT+CGG - chr3.1:77621021-77621040 MS.gene06332:intron 30.0%
AGAGTGTATGTATGTATGTA+TGG - chr3.1:77617969-77617988 MS.gene06332:intron 30.0%
AGTCAATAGTAGAATCTCAT+TGG + chr3.1:77620894-77620913 None:intergenic 30.0%
ATAAGTATCTAATAGGGTGT+GGG + chr3.1:77620644-77620663 None:intergenic 30.0%
ATATTATCTTTGGCAGTCTT+TGG - chr3.1:77622891-77622910 MS.gene06332:intron 30.0%
CATGATGAACAAATATTTGG+TGG - chr3.1:77620472-77620491 MS.gene06332:intron 30.0%
CATTGTAAATGGAAGACTTA+CGG + chr3.1:77617833-77617852 None:intergenic 30.0%
CTAAATGTGTGAAAAGAAAC+CGG + chr3.1:77618781-77618800 None:intergenic 30.0%
CTTACATCTGATGATAAGAT+TGG - chr3.1:77619501-77619520 MS.gene06332:intron 30.0%
CTTCGTATGTTTAGAGAAAA+GGG + chr3.1:77619001-77619020 None:intergenic 30.0%
GAAAGAATAGCACAATGATA+TGG - chr3.1:77620281-77620300 MS.gene06332:intron 30.0%
GAAAGCTTGATTGAAATGAT+TGG + chr3.1:77620855-77620874 None:intergenic 30.0%
GAATCTGGTATAGAAAATTG+GGG - chr3.1:77622499-77622518 MS.gene06332:intron 30.0%
GGGCTTATAAGTATCTAATA+GGG + chr3.1:77620650-77620669 None:intergenic 30.0%
GTTGGATTCCAAAAAGATTA+AGG + chr3.1:77618070-77618089 None:intergenic 30.0%
TAATTGGACTTCAACTTAAG+TGG - chr3.1:77620699-77620718 MS.gene06332:intron 30.0%
TATAAGTATCTAATAGGGTG+TGG + chr3.1:77620645-77620664 None:intergenic 30.0%
TCTCTATCTTCTTCTGATAT+AGG - chr3.1:77620546-77620565 MS.gene06332:intron 30.0%
TGAAATGATTGGAAAGAGTA+AGG + chr3.1:77620844-77620863 None:intergenic 30.0%
TGAACTAATCATGTTTGAGT+AGG - chr3.1:77620163-77620182 MS.gene06332:intron 30.0%
TGAGAAAACAGCTTATAACA+TGG + chr3.1:77617995-77618014 None:intergenic 30.0%
TGGGCTTATAAGTATCTAAT+AGG + chr3.1:77620651-77620670 None:intergenic 30.0%
TGGGTAATAAAAGTAATCAC+CGG + chr3.1:77621472-77621491 None:intergenic 30.0%
TGTTGAGGAGAAATATTTGT+TGG - chr3.1:77620394-77620413 MS.gene06332:intron 30.0%
TTAGGATACAATACTGAGTA+TGG - chr3.1:77618681-77618700 MS.gene06332:intron 30.0%
TTCGTATGTTTAGAGAAAAG+GGG + chr3.1:77619000-77619019 None:intergenic 30.0%
TTTACAGTGTTGTCAAATAG+TGG - chr3.1:77619646-77619665 MS.gene06332:intron 30.0%
! AAAAAGTACACTACCTCTTT+AGG + chr3.1:77621684-77621703 None:intergenic 30.0%
! AAAAGGAGTGAAAAGTATGT+TGG - chr3.1:77622285-77622304 MS.gene06332:intron 30.0%
! AAAAGTACACTACCTCTTTA+GGG + chr3.1:77621683-77621702 None:intergenic 30.0%
! AACAGTTCATGAAGTTTTCT+TGG - chr3.1:77622159-77622178 MS.gene06332:intron 30.0%
! AACTTGGTCCTTAATCTTTT+TGG - chr3.1:77618059-77618078 MS.gene06332:intron 30.0%
! ATCCAATGTATAGCTTCTTT+TGG - chr3.1:77618733-77618752 MS.gene06332:intron 30.0%
! ATTCCTGTTTCTCTTTGTTA+GGG - chr3.1:77621810-77621829 MS.gene06332:intron 30.0%
! CAATTTTCAATATCAACCAG+TGG - chr3.1:77621416-77621435 MS.gene06332:CDS 30.0%
! CTGGTTGATATTGAAAATTG+TGG + chr3.1:77621416-77621435 None:intergenic 30.0%
! TAAAGTGCTCTTTCTTTCTT+TGG - chr3.1:77618511-77618530 MS.gene06332:intron 30.0%
! TAATTCCAAGTAATTTGTGC+AGG - chr3.1:77621892-77621911 MS.gene06332:intron 30.0%
! TAGTTTTCTTCAAAAGCCAT+TGG - chr3.1:77619947-77619966 MS.gene06332:intron 30.0%
! TATTCCTGTTTCTCTTTGTT+AGG - chr3.1:77621809-77621828 MS.gene06332:intron 30.0%
! TATTTTATGTCCAATCTCAC+AGG - chr3.1:77619899-77619918 MS.gene06332:intron 30.0%
! TGAACAAATATTTGGTGGTT+TGG - chr3.1:77620477-77620496 MS.gene06332:intron 30.0%
! TGTAAAAGCTAGAGTATTAC+CGG + chr3.1:77619603-77619622 None:intergenic 30.0%
!! AAAAAGCACATGTTTTCAGT+GGG - chr3.1:77619435-77619454 MS.gene06332:CDS 30.0%
!! ACAAAGAGTACTTGATTCTA+AGG + chr3.1:77618197-77618216 None:intergenic 30.0%
!! ATGTTTAAATCTCTGGAATC+TGG - chr3.1:77622842-77622861 MS.gene06332:intron 30.0%
!! TAGTTGGTTAGTTTGTTATG+TGG - chr3.1:77618297-77618316 MS.gene06332:CDS 30.0%
!! TGATAGTGTTTTTCACCAAT+GGG - chr3.1:77623086-77623105 MS.gene06332:CDS 30.0%
!!! GATATTTTTTAGTGCACATG+GGG - chr3.1:77621919-77621938 MS.gene06332:intron 30.0%
!!! TTTCTCACTAGTTTTTAGCT+TGG - chr3.1:77618008-77618027 MS.gene06332:intron 30.0%
!!! TTTTGTTTTGTTAACTCGTG+CGG - chr3.1:77622396-77622415 MS.gene06332:intron 30.0%
AATCCCTAACAAAGAGAAAC+AGG + chr3.1:77621816-77621835 None:intergenic 35.0%
ACAATGCTATAGCTGCTATT+TGG + chr3.1:77619750-77619769 None:intergenic 35.0%
ACTAGTCAGGTCTAAGAAAA+AGG + chr3.1:77622375-77622394 None:intergenic 35.0%
AGAATAGCACAATGATATGG+CGG - chr3.1:77620284-77620303 MS.gene06332:intron 35.0%
AGCATATGACTCGCAAAATA+AGG - chr3.1:77622945-77622964 MS.gene06332:intron 35.0%
AGGGAAGAAATAGAACATGT+TGG + chr3.1:77618088-77618107 None:intergenic 35.0%
ATCTGCCAAATCAGAAATGA+AGG + chr3.1:77622554-77622573 None:intergenic 35.0%
ATGTAGTTTCAACGACTTCA+TGG - chr3.1:77621709-77621728 MS.gene06332:intron 35.0%
CAACAGTTACTGCATAAAAG+TGG + chr3.1:77620379-77620398 None:intergenic 35.0%
CAACTAAGCTAATCCAAACT+TGG - chr3.1:77618043-77618062 MS.gene06332:intron 35.0%
CATGAGAGTCACATTGTAAA+TGG + chr3.1:77617844-77617863 None:intergenic 35.0%
CATGTTATGAATCCCTTCTA+GGG + chr3.1:77618107-77618126 None:intergenic 35.0%
CATTGGATCTTTATAGAGCA+CGG + chr3.1:77618721-77618740 None:intergenic 35.0%
CATTGGTGAAAAACACTATC+AGG + chr3.1:77623087-77623106 None:intergenic 35.0%
CCAGTTTGTATCTGTTCTAA+GGG - chr3.1:77619971-77619990 MS.gene06332:intron 35.0%
CCTTAGAACAGATACAAACT+GGG + chr3.1:77619973-77619992 None:intergenic 35.0%
CGTATAATATCCTGTGAGAT+TGG + chr3.1:77619912-77619931 None:intergenic 35.0%
CTAGTCAGGTCTAAGAAAAA+GGG + chr3.1:77622374-77622393 None:intergenic 35.0%
CTCCAAAAGAAGCTATACAT+TGG + chr3.1:77618738-77618757 None:intergenic 35.0%
GAAGTCGTTGAAACTACATA+AGG + chr3.1:77621708-77621727 None:intergenic 35.0%
GACTATAGAATAACAAAGCC+TGG + chr3.1:77620196-77620215 None:intergenic 35.0%
GATGAGACAATAGTTGAACT+TGG - chr3.1:77622259-77622278 MS.gene06332:intron 35.0%
GCTTCGTATGTTTAGAGAAA+AGG + chr3.1:77619002-77619021 None:intergenic 35.0%
GCTTTCGGAGTAAATATTGT+TGG + chr3.1:77620777-77620796 None:intergenic 35.0%
TAATCATCGGTAGTTGTTAC+TGG + chr3.1:77618618-77618637 None:intergenic 35.0%
TCAACGTGAAGGATACATAA+AGG - chr3.1:77621614-77621633 MS.gene06332:intron 35.0%
TCTATGTCAAGTCTACTGTT+AGG - chr3.1:77618217-77618236 MS.gene06332:intron 35.0%
TCTCTCTATATATAGAACCC+TGG - chr3.1:77620618-77620637 MS.gene06332:intron 35.0%
TGATAAAGATTATGCCACCA+GGG - chr3.1:77621169-77621188 MS.gene06332:intron 35.0%
TGTGGCATAAAAAATGCATG+AGG + chr3.1:77619190-77619209 None:intergenic 35.0%
TTATGGTCACAATACAACAC+AGG + chr3.1:77618565-77618584 None:intergenic 35.0%
TTCTTCTTACAGAGTAGAGT+TGG - chr3.1:77622208-77622227 MS.gene06332:intron 35.0%
TTGATAAAGATTATGCCACC+AGG - chr3.1:77621168-77621187 MS.gene06332:intron 35.0%
TTGGATCATCAATCCAACAT+TGG + chr3.1:77620758-77620777 None:intergenic 35.0%
TTGTATCGTAAGCTTTCCTT+CGG - chr3.1:77618165-77618184 MS.gene06332:intron 35.0%
! ATTTAACCTTTTTGCAGACC+CGG - chr3.1:77619581-77619600 MS.gene06332:intron 35.0%
! CAATGTATAGCTTCTTTTGG+AGG - chr3.1:77618736-77618755 MS.gene06332:intron 35.0%
! CTTTTATGCAGTAACTGTTG+AGG - chr3.1:77620379-77620398 MS.gene06332:intron 35.0%
! GATAGTGTTTTTCACCAATG+GGG - chr3.1:77623087-77623106 MS.gene06332:CDS 35.0%
! GCTGCTATGTAATTTTTCAC+AGG + chr3.1:77619360-77619379 None:intergenic 35.0%
! GTAAAAGCTAGAGTATTACC+GGG + chr3.1:77619602-77619621 None:intergenic 35.0%
! GTTCTATTTCTTCCCTAGAA+GGG - chr3.1:77618092-77618111 MS.gene06332:intron 35.0%
! TGAGTTGCATTTTTCATTGC+TGG - chr3.1:77621857-77621876 MS.gene06332:intron 35.0%
! TGTTCTATTTCTTCCCTAGA+AGG - chr3.1:77618091-77618110 MS.gene06332:intron 35.0%
! TTCTTGAGATGGATTTGAAC+CGG + chr3.1:77618914-77618933 None:intergenic 35.0%
! TTTTATCCCGCTATTCCTTT+AGG - chr3.1:77619830-77619849 MS.gene06332:CDS 35.0%
!! AAAAGTGCTGAAACTTGGAA+TGG - chr3.1:77623009-77623028 MS.gene06332:intron 35.0%
!! AAAGAATTGGCTCTAGAATC+TGG - chr3.1:77622484-77622503 MS.gene06332:intron 35.0%
!! CAAAAAGCACATGTTTTCAG+TGG - chr3.1:77619434-77619453 MS.gene06332:CDS 35.0%
!! CTGATAGTGTTTTTCACCAA+TGG - chr3.1:77623085-77623104 MS.gene06332:CDS 35.0%
!! TGACAAAAAGTGCTGAAACT+TGG - chr3.1:77623004-77623023 MS.gene06332:intron 35.0%
!!! ACATGTGCTTTTTGAGTGAT+TGG + chr3.1:77619428-77619447 None:intergenic 35.0%
!!! TCACTAGTTTTTAGCTTGGT+TGG - chr3.1:77618012-77618031 MS.gene06332:intron 35.0%
AAAGGATGGAGTTACAAAGC+TGG - chr3.1:77621373-77621392 MS.gene06332:CDS 40.0%
AACAACAACTCTATTGCCGA+GGG - chr3.1:77618440-77618459 MS.gene06332:intron 40.0%
ACCCTCCTTCATTTCTGATT+TGG - chr3.1:77622546-77622565 MS.gene06332:intron 40.0%
AGATCGCAGTGAAGAAAAAC+TGG + chr3.1:77619382-77619401 None:intergenic 40.0%
AGCACACAGTATTACCTTCA+TGG - chr3.1:77621589-77621608 MS.gene06332:intron 40.0%
ATACAACACAGGTAGAGGTT+AGG + chr3.1:77618554-77618573 None:intergenic 40.0%
ATAGCGCCTTCATTTGATAG+AGG - chr3.1:77618375-77618394 MS.gene06332:CDS 40.0%
ATCACGACCTAAAGGAATAG+CGG + chr3.1:77619840-77619859 None:intergenic 40.0%
CAGGTTTCAACAATGTGATC+AGG + chr3.1:77621312-77621331 None:intergenic 40.0%
CATACATACATACACTCTCC+AGG + chr3.1:77617967-77617986 None:intergenic 40.0%
CATGACCTGCACAAATTACT+TGG + chr3.1:77621900-77621919 None:intergenic 40.0%
CCATGTTATGAATCCCTTCT+AGG + chr3.1:77618108-77618127 None:intergenic 40.0%
CCCAGTTTGTATCTGTTCTA+AGG - chr3.1:77619970-77619989 MS.gene06332:intron 40.0%
CCCTTAGAACAGATACAAAC+TGG + chr3.1:77619974-77619993 None:intergenic 40.0%
CCTAGAAGGGATTCATAACA+TGG - chr3.1:77618105-77618124 MS.gene06332:intron 40.0%
GAATATTATCGCCCTCTCTT+AGG - chr3.1:77623109-77623128 MS.gene06332:CDS 40.0%
GATTGGAAAGAGTAAGGATG+AGG + chr3.1:77620838-77620857 None:intergenic 40.0%
GCATCAGTTATACGTCTAAG+AGG + chr3.1:77620041-77620060 None:intergenic 40.0%
GCCAAATCAGAAATGAAGGA+GGG + chr3.1:77622550-77622569 None:intergenic 40.0%
GGAATGTGTGGATTTGATCA+TGG - chr3.1:77621994-77622013 MS.gene06332:intron 40.0%
GGAGATCATTAGAAGAGCAA+AGG + chr3.1:77620987-77621006 None:intergenic 40.0%
TAACAACAACTCTATTGCCG+AGG - chr3.1:77618439-77618458 MS.gene06332:intron 40.0%
TACACAACTCAGCAATGGAT+AGG - chr3.1:77618827-77618846 MS.gene06332:CDS 40.0%
TACTCCCCTCTATCAAATGA+AGG + chr3.1:77618384-77618403 None:intergenic 40.0%
TAGACGTATAACTGATGCAC+AGG - chr3.1:77620043-77620062 MS.gene06332:intron 40.0%
TAGATACTCATCCTCTCTGA+AGG + chr3.1:77621559-77621578 None:intergenic 40.0%
TAGCGCCTTCATTTGATAGA+GGG - chr3.1:77618376-77618395 MS.gene06332:CDS 40.0%
TATGAATTGGTCCTTCAGAG+AGG - chr3.1:77621545-77621564 MS.gene06332:CDS 40.0%
TCAATAGCTTCCTCAGTGAA+TGG + chr3.1:77621094-77621113 None:intergenic 40.0%
TCACAATACAACACAGGTAG+AGG + chr3.1:77618559-77618578 None:intergenic 40.0%
TCGGTAGTTGTTACTGGTAA+TGG + chr3.1:77618612-77618631 None:intergenic 40.0%
TCTGTTACACAACTCAGCAA+TGG - chr3.1:77618822-77618841 MS.gene06332:CDS 40.0%
TGCCAAATCAGAAATGAAGG+AGG + chr3.1:77622551-77622570 None:intergenic 40.0%
TGTAAATGGAAGACTTACGG+AGG + chr3.1:77617830-77617849 None:intergenic 40.0%
TTAGGTTCATCACGACCTAA+AGG + chr3.1:77619848-77619867 None:intergenic 40.0%
TTTAGTAGCTCGAACAGATC+AGG - chr3.1:77619461-77619480 MS.gene06332:CDS 40.0%
! AGAAGTAGAAGGTGATAACG+TGG + chr3.1:77617762-77617781 None:intergenic 40.0%
! AGAATGTGTGTTGATCTGGA+AGG + chr3.1:77620503-77620522 None:intergenic 40.0%
! AGAGAGAATGTGTGTTGATC+TGG + chr3.1:77620507-77620526 None:intergenic 40.0%
! AGTGATTGGTTGGAAACCAA+GGG + chr3.1:77619414-77619433 None:intergenic 40.0%
! CGGAAGTGTACAAGAGTTAT+TGG - chr3.1:77622921-77622940 MS.gene06332:intron 40.0%
! GATTCTAAGGACATTTCCGA+AGG + chr3.1:77618184-77618203 None:intergenic 40.0%
! GGAGTGTTATTGCTAAACCT+TGG - chr3.1:77619522-77619541 MS.gene06332:intron 40.0%
! GTATGTTGGCTGTTCCAATT+AGG - chr3.1:77622299-77622318 MS.gene06332:intron 40.0%
! GTCTACTGGAGAGTATATTC+CGG - chr3.1:77621450-77621469 MS.gene06332:CDS 40.0%
! GTGTTATTGCTAAACCTTGG+AGG - chr3.1:77619525-77619544 MS.gene06332:intron 40.0%
!! AGAAGCGTTGTTGAGTGTAT+AGG + chr3.1:77617792-77617811 None:intergenic 40.0%
!! GTGGTTCTAACTACTATTGC+TGG + chr3.1:77620360-77620379 None:intergenic 40.0%
!! TAGGGTTTTAACCATTCCAC+AGG + chr3.1:77622235-77622254 None:intergenic 40.0%
!!! GTGCTTTTTGAGTGATTGGT+TGG + chr3.1:77619424-77619443 None:intergenic 40.0%
AAATAAGGAGTTGCCATCGC+CGG - chr3.1:77622960-77622979 MS.gene06332:intron 45.0%
AACTCTTGTACACTTCCGAG+CGG + chr3.1:77622919-77622938 None:intergenic 45.0%
ACAACAACTCTATTGCCGAG+GGG - chr3.1:77618441-77618460 MS.gene06332:intron 45.0%
ACAGATACAAACTGGGCCAA+TGG + chr3.1:77619966-77619985 None:intergenic 45.0%
ACGAGACAATCTCTCTTCCA+AGG + chr3.1:77618471-77618490 None:intergenic 45.0%
AGAGAAGGCTACGCTTCAAT+TGG - chr3.1:77620005-77620024 MS.gene06332:intron 45.0%
AGCGCCTTCATTTGATAGAG+GGG - chr3.1:77618377-77618396 MS.gene06332:CDS 45.0%
AGCGTTGTTGAGTGTATAGG+AGG + chr3.1:77617789-77617808 None:intergenic 45.0%
AGGGCGATAATATTCCCCAT+TGG + chr3.1:77623104-77623123 None:intergenic 45.0%
AGTCTAGCAGGATCTTGAGA+TGG + chr3.1:77618944-77618963 None:intergenic 45.0%
ATTGAAAGTCTCCCACATGC+TGG - chr3.1:77622580-77622599 MS.gene06332:intron 45.0%
ATTGTAGAGCGATAGCAGGT+AGG + chr3.1:77621200-77621219 None:intergenic 45.0%
CACTGAGGAAGCTATTGAAC+AGG - chr3.1:77621096-77621115 MS.gene06332:intron 45.0%
CAGAAAAAGTCCTTCTGCTC+TGG - chr3.1:77619303-77619322 MS.gene06332:intron 45.0%
CCTTCACGTTGATACCATGA+AGG + chr3.1:77621606-77621625 None:intergenic 45.0%
CCTTCATGGTATCAACGTGA+AGG - chr3.1:77621603-77621622 MS.gene06332:intron 45.0%
GTATTACCGGGTCTGCAAAA+AGG + chr3.1:77619590-77619609 None:intergenic 45.0%
GTTGTTGAGTGTATAGGAGG+CGG + chr3.1:77617786-77617805 None:intergenic 45.0%
GTTTGAGTAGGAGTTGTTCC+AGG - chr3.1:77620175-77620194 MS.gene06332:intron 45.0%
TACGGAGGACGCTTGAAATT+AGG + chr3.1:77617815-77617834 None:intergenic 45.0%
TCACGACCTAAAGGAATAGC+GGG + chr3.1:77619839-77619858 None:intergenic 45.0%
TCGTATTGTAGAGCGATAGC+AGG + chr3.1:77621204-77621223 None:intergenic 45.0%
TCTAATGATCTCCTCTGCAC+AGG - chr3.1:77620994-77621013 MS.gene06332:intron 45.0%
TGATCCTTACAAGGCAGAGA+TGG - chr3.1:77621970-77621989 MS.gene06332:intron 45.0%
TTACTGGCATCCATTCACTG+AGG - chr3.1:77621081-77621100 MS.gene06332:intron 45.0%
! AGACAGAAAGTTGATCGCCT+AGG + chr3.1:77619077-77619096 None:intergenic 45.0%
! GAGTGATTGGTTGGAAACCA+AGG + chr3.1:77619415-77619434 None:intergenic 45.0%
!! GCAGAAGGACTTTTTCTGAG+AGG + chr3.1:77619301-77619320 None:intergenic 45.0%
!! TGCACATCTTCTAGAGTCTC+TGG + chr3.1:77619552-77619571 None:intergenic 45.0%
!!! GAGTTTTGACTGCCCTAAAG+AGG - chr3.1:77621668-77621687 MS.gene06332:intron 45.0%
ACAGAGTAGAGTTGGACCTG+TGG - chr3.1:77622216-77622235 MS.gene06332:intron 50.0%
ACCTGATAGGCAAGGGTGAA+GGG + chr3.1:77622049-77622068 None:intergenic 50.0%
AGAATACCTGTCGAGCTTCG+AGG + chr3.1:77622624-77622643 None:intergenic 50.0%
ATAGCAGGTAGGAGAATCCC+TGG + chr3.1:77621189-77621208 None:intergenic 50.0%
ATCTAATAGGGTGTGGGCCA+GGG + chr3.1:77620638-77620657 None:intergenic 50.0%
ATGCCAACGTACACTTCAGC+AGG + chr3.1:77621058-77621077 None:intergenic 50.0%
CACATCCTAGAGCAGGAACA+CGG + chr3.1:77622525-77622544 None:intergenic 50.0%
CGTAGCCTTCTCTGCTCTTT+GGG + chr3.1:77619998-77620017 None:intergenic 50.0%
CTCTGCCTTGTAAGGATCAC+CGG + chr3.1:77621969-77621988 None:intergenic 50.0%
CTCTTCCAAGGATTTCCCCT+CGG + chr3.1:77618459-77618478 None:intergenic 50.0%
CTTGCTTATGTGGAAGAGGC+CGG - chr3.1:77621947-77621966 MS.gene06332:intron 50.0%
GAAGGCTACGCTTCAATTGG+TGG - chr3.1:77620008-77620027 MS.gene06332:intron 50.0%
GCCTCTTCCACATAAGCAAG+AGG + chr3.1:77621947-77621966 None:intergenic 50.0%
GCCTCTTGCTTATGTGGAAG+AGG - chr3.1:77621943-77621962 MS.gene06332:intron 50.0%
GTAGAGTTGGACCTGTGGAA+TGG - chr3.1:77622221-77622240 MS.gene06332:intron 50.0%
GTAGCCTTCTCTGCTCTTTG+GGG + chr3.1:77619997-77620016 None:intergenic 50.0%
TACCTGATAGGCAAGGGTGA+AGG + chr3.1:77622050-77622069 None:intergenic 50.0%
TAGACGTAAGCTTGAGCCAC+TGG + chr3.1:77621435-77621454 None:intergenic 50.0%
TAGGAGGCGGAAGAAGTAGA+AGG + chr3.1:77617773-77617792 None:intergenic 50.0%
TATCTAATAGGGTGTGGGCC+AGG + chr3.1:77620639-77620658 None:intergenic 50.0%
TATTGCCGAGGGGAAATCCT+TGG - chr3.1:77618451-77618470 MS.gene06332:intron 50.0%
TCCTCCATCTCTGCCTTGTA+AGG + chr3.1:77621977-77621996 None:intergenic 50.0%
TCCTTACAAGGCAGAGATGG+AGG - chr3.1:77621973-77621992 MS.gene06332:intron 50.0%
TGCCAACGTACACTTCAGCA+GGG + chr3.1:77621057-77621076 None:intergenic 50.0%
TGGCTCAAGCTTACGTCTAC+TGG - chr3.1:77621436-77621455 MS.gene06332:CDS 50.0%
TGTACGTTGGCATGCGTTAC+TGG - chr3.1:77621065-77621084 MS.gene06332:intron 50.0%
TTCGAGGCTTGAAACTGCCA+TGG + chr3.1:77622608-77622627 None:intergenic 50.0%
TTGATCGCCTAGGATGACAG+CGG + chr3.1:77619067-77619086 None:intergenic 50.0%
! GCGATCTGAAGCAAAACCCT+TGG - chr3.1:77619395-77619414 MS.gene06332:intron 50.0%
! GGTGATAACGTGGCATGAGT+TGG + chr3.1:77617752-77617771 None:intergenic 50.0%
! TGAGAGGTACAGATTGCCTG+TGG + chr3.1:77619285-77619304 None:intergenic 50.0%
!! GTTTTGACGAGCAGTCTAGC+AGG + chr3.1:77618956-77618975 None:intergenic 50.0%
AGAGGCCGGTGATCCTTACA+AGG - chr3.1:77621961-77621980 MS.gene06332:intron 55.0%
CAAGTCTTCAGCCTGTGCAG+AGG + chr3.1:77621008-77621027 None:intergenic 55.0%
CACATGAGCTCCAGAGCAGA+AGG + chr3.1:77619316-77619335 None:intergenic 55.0%
CCCCATTCCCACACTATCAC+CGG + chr3.1:77622982-77623001 None:intergenic 55.0%
CTAGAGTCTCTGGACCTCCA+AGG + chr3.1:77619542-77619561 None:intergenic 55.0%
CTCCTTACCGCTGTCATCCT+AGG - chr3.1:77619057-77619076 MS.gene06332:intron 55.0%
GAGGGTTCACATCCTAGAGC+AGG + chr3.1:77622532-77622551 None:intergenic 55.0%
GCGTAGCCTTCTCTGCTCTT+TGG + chr3.1:77619999-77620018 None:intergenic 55.0%
GGCAGAGATGGAGGAATGTG+TGG - chr3.1:77621982-77622001 MS.gene06332:intron 55.0%
GGCTACGCTTCAATTGGTGG+TGG - chr3.1:77620011-77620030 MS.gene06332:intron 55.0%
GTCCCTGCTGAAGTGTACGT+TGG - chr3.1:77621052-77621071 MS.gene06332:intron 55.0%
TCCCTTCACCCTTGCCTATC+AGG - chr3.1:77622045-77622064 MS.gene06332:intron 55.0%
TTCAAGCCTCGAAGCTCGAC+AGG - chr3.1:77622615-77622634 MS.gene06332:intron 55.0%
! CCGGTGATAGTGTGGGAATG+GGG - chr3.1:77622979-77622998 MS.gene06332:intron 55.0%
! GCCGGTGATAGTGTGGGAAT+GGG - chr3.1:77622978-77622997 MS.gene06332:intron 55.0%
! TGGCAGTCTTTGGTTCCGCT+CGG - chr3.1:77622901-77622920 MS.gene06332:intron 55.0%
! TGGGGTGCCTCTTGCTTATG+TGG - chr3.1:77621937-77621956 MS.gene06332:intron 55.0%
!! CTTCTGCTCTGGAGCTCATG+TGG - chr3.1:77619314-77619333 MS.gene06332:intron 55.0%
ACTGCCATGGCACCAGCATG+TGG + chr3.1:77622595-77622614 None:intergenic 60.0%
AGCTGCAAGCACGCGTGATC+TGG - chr3.1:77620584-77620603 MS.gene06332:intron 60.0%
AGGGCCCCAAAGAGCAGAGA+AGG - chr3.1:77619990-77620009 MS.gene06332:intron 60.0%
CGCCTAGGATGACAGCGGTA+AGG + chr3.1:77619062-77619081 None:intergenic 60.0%
CTGCCATGGCACCAGCATGT+GGG + chr3.1:77622594-77622613 None:intergenic 60.0%
GCAGGTAGGAGAATCCCTGG+TGG + chr3.1:77621186-77621205 None:intergenic 60.0%
TCCCACACTATCACCGGCGA+TGG + chr3.1:77622976-77622995 None:intergenic 60.0%
! CGCCGGTGATAGTGTGGGAA+TGG - chr3.1:77622977-77622996 MS.gene06332:intron 60.0%
! CTTTTGCAGGCTGTCGCCAC+AGG - chr3.1:77619266-77619285 MS.gene06332:CDS 60.0%
! GCCATCGCCGGTGATAGTGT+GGG - chr3.1:77622972-77622991 MS.gene06332:intron 60.0%
! TCTCCCACATGCTGGTGCCA+TGG - chr3.1:77622588-77622607 MS.gene06332:intron 60.0%
! TGCCATCGCCGGTGATAGTG+TGG - chr3.1:77622971-77622990 MS.gene06332:intron 60.0%
!! CTGCTCTGGAGCTCATGTGG+AGG - chr3.1:77619317-77619336 MS.gene06332:intron 60.0%
TGGGGCCGTGTTCCTGCTCT+AGG - chr3.1:77622517-77622536 MS.gene06332:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 77617734 77623134 77617734 ID=MS.gene06332
chr3.1 mRNA 77617734 77623134 77617734 ID=MS.gene06332.t1;Parent=MS.gene06332
chr3.1 exon 77623037 77623134 77623037 ID=MS.gene06332.t1.exon1;Parent=MS.gene06332.t1
chr3.1 CDS 77623037 77623134 77623037 ID=cds.MS.gene06332.t1;Parent=MS.gene06332.t1
chr3.1 exon 77621266 77621593 77621266 ID=MS.gene06332.t1.exon2;Parent=MS.gene06332.t1
chr3.1 CDS 77621266 77621593 77621266 ID=cds.MS.gene06332.t1;Parent=MS.gene06332.t1
chr3.1 exon 77620804 77620947 77620804 ID=MS.gene06332.t1.exon3;Parent=MS.gene06332.t1
chr3.1 CDS 77620804 77620947 77620804 ID=cds.MS.gene06332.t1;Parent=MS.gene06332.t1
chr3.1 exon 77619751 77619852 77619751 ID=MS.gene06332.t1.exon4;Parent=MS.gene06332.t1
chr3.1 CDS 77619751 77619852 77619751 ID=cds.MS.gene06332.t1;Parent=MS.gene06332.t1
chr3.1 exon 77619397 77619500 77619397 ID=MS.gene06332.t1.exon5;Parent=MS.gene06332.t1
chr3.1 CDS 77619397 77619500 77619397 ID=cds.MS.gene06332.t1;Parent=MS.gene06332.t1
chr3.1 exon 77619179 77619305 77619179 ID=MS.gene06332.t1.exon6;Parent=MS.gene06332.t1
chr3.1 CDS 77619179 77619305 77619179 ID=cds.MS.gene06332.t1;Parent=MS.gene06332.t1
chr3.1 exon 77618802 77618954 77618802 ID=MS.gene06332.t1.exon7;Parent=MS.gene06332.t1
chr3.1 CDS 77618802 77618954 77618802 ID=cds.MS.gene06332.t1;Parent=MS.gene06332.t1
chr3.1 exon 77618548 77618648 77618548 ID=MS.gene06332.t1.exon8;Parent=MS.gene06332.t1
chr3.1 CDS 77618548 77618648 77618548 ID=cds.MS.gene06332.t1;Parent=MS.gene06332.t1
chr3.1 exon 77618232 77618433 77618232 ID=MS.gene06332.t1.exon9;Parent=MS.gene06332.t1
chr3.1 CDS 77618232 77618433 77618232 ID=cds.MS.gene06332.t1;Parent=MS.gene06332.t1
chr3.1 exon 77617734 77617961 77617734 ID=MS.gene06332.t1.exon10;Parent=MS.gene06332.t1
chr3.1 CDS 77617734 77617961 77617734 ID=cds.MS.gene06332.t1;Parent=MS.gene06332.t1
Gene Sequence

>MS.gene06332

ATGAAGCTTCAAACTCCAACTCATGCCACGTTATCACCTTCTACTTCTTCCGCCTCCTATACACTCAACAACGCTTCTCCTAATTTCAAGCGTCCTCCGTAAGTCTTCCATTTACAATGTGACTCTCATGTGTTTATAACATTAATTTTTTTTATCGTATAAGTGCTTATGTATAAGCTATTTTAGTAACAAAGCTAAATGGTCTTCATTTAAGAAAAAAATAAAATTATCCTGGAGAGTGTATGTATGTATGTATGGCCATGTTATAAGCTGTTTTCTCACTAGTTTTTAGCTTGGTTGGTAAGCTCTCAACTAAGCTAATCCAAACTTGGTCCTTAATCTTTTTGGAATCCAACATGTTCTATTTCTTCCCTAGAAGGGATTCATAACATGGCAATTAAAACGAGATTAATTTTACAATTCAACTTACATTGTATCGTAAGCTTTCCTTCGGAAATGTCCTTAGAATCAAGTACTCTTTGTTCTATGTCAAGTCTACTGTTAGGATTATTGAATAAATGGAAATTAGAGTAGTTAAACTAGTTAAGAATTGTTATAAAAATTAGTTGGTTAGTTTGTTATGTGGCTGTTCAGCTGTTTAGTTTGTTATGTGTCTGTTAAGCCTATAAGCAAGTCTTTAAATAGCGCCTTCATTTGATAGAGGGGAGTATATCTTTTGAATGTTGTGAAATTTGTGAATAAGAGTAACAACAACTCTATTGCCGAGGGGAAATCCTTGGAAGAGAGATTGTCTCGTACTTAATCATATTTCTTAGATAAAGTGCTCTTTCTTTCTTTGGAATTCAATTGTTGGGCTCCTAACCTCTACCTGTGTTGTATTGTGACCATAAACTTAACATTTTGATCTATGAGGTCCATTACCAGTAACAACTACCGATGATTATGAAGTTACTTTTTGGTTAATGTAAAATTGTAAGTTAATCAGATTAGGATACAATACTGAGTATGGTTCTAATACTTTTTCCGTGCTCTATAAAGATCCAATGTATAGCTTCTTTTGGAGGATGAATAAATAATCATTTTCCGGTTTCTTTTCACACATTTAGAATTCTCTGATATTTCAGAGCTCTGTTACACAACTCAGCAATGGATAGGAATTCACCGTTTCTCATTATAACAACACATTGAAGTTCAAAAATATTCAAGCACTAATTTACCGGTTCAAATCCATCTCAAGAAAAAAAATCCATCTCAAGATCCTGCTAGACTGCTCGTCAAAACATACGATACGATATCTGCTAACCCCTTTTCTCTAAACATACGAAGCATCTTGACATTGATTGTATTTTGTTCGTGAAAAATCTCCTTACCGCTGTCATCCTAGGCGATCAACTTTCTGTCTTCTAAACTTCAATTTGATGCAATGATATAACACATTCATTTATTGCTCAAAACATTTTAAACTCTCGCTGAAAGTTATACTTCAACTTTTCCTCATGCATTTTTTATGCCACATTTTATCACTAATTATCAAGGATAGCAAAAAACTTTTGAAGCTTATATTATATTTACTTTTGCAGGCTGTCGCCACAGGCAATCTGTACCTCTCAGAAAAAGTCCTTCTGCTCTGGAGCTCATGTGGAGGCTTCTGTTAACAATAATCCTGTGAAAAATTACATAGCAGCCAGTTTTTCTTCACTGCGATCTGAAGCAAAACCCTTGGTTTCCAACCAATCACTCAAAAAGCACATGTTTTCAGTGGGAGCTTTAGTAGCTCGAACAGATCAGGATGTTTCTGATGCAACTCTTACATCTGATGATAAGATTGGAGTGTTATTGCTAAACCTTGGAGGTCCAGAGACTCTAGAAGATGTGCAACCTTTTTTATTTAACCTTTTTGCAGACCCGGTAATACTCTAGCTTTTACATACTCTACATTTGAACTGTATTTTTTACAGTGTTGTCAAATAGTGGCGCTATAGTGCTATAGTGTATTGAAATATTAAAAAATTGCTATTATTTATGCGTAAGATGATTTAGTACAAACTGTTACCAAATAGCAGCTATAGCATTGTAGCATAGCAGAATTTGAACAAGCTTCTATTTTACATAATATGCGATTGACAACACTGCTTTTTTATCCCGCTATTCCTTTAGGTCGTGATGAACCTAAGATTGTCATTTTTGCTGTTTGATATCAGTTGTATTTTATGTCCAATCTCACAGGATATTATACGATTGCCAAGAATATTTAGTTTTCTTCAAAAGCCATTGGCCCAGTTTGTATCTGTTCTAAGGGCCCCAAAGAGCAGAGAAGGCTACGCTTCAATTGGTGGTGGTTCTCCTCTTAGACGTATAACTGATGCACAGGCATGCCACTTCCTGTTATTTATTTATTTTCCTTTTGATTATGACTTATATTTCTCTCTCAGATGATTACAATACTTCAAGTTTCAATATTCAGAAAATGAACTAATCATGTTTGAGTAGGAGTTGTTCCAGGCTTTGTTATTCTATAGTCTCTATATGCACTTGATGCATGAAATTTGTCTTTGCGACTTTTGTCAGCTTCAGATTTTGCAAAGTGAAAGAATAGCACAATGATATGGCGGAAATTTATATAACTCTATCAAATAGTAGCATTATGTGTATTTTGATTCATCCAGCAATAGTAGTTAGAACCACTTTTATGCAGTAACTGTTGAGGAGAAATATTTGTTGGAACCAAAATCAATCATGTTAATAATCAGAATAATATGTGGAGGCGTACTTGAATTCATGATGAACAAATATTTGGTGGTTTGGCCTTCCAGATCAACACACATTCTCTCTGAAAGAACCCTTAATTACTTCTCTATCTTCTTCTGATATAGGTAGTCAGAAAATAACAGCTGCAAGCACGCGTGATCTGGAGACCATAACTTCTCTCTATATATAGAACCCTGGCCCACACCCTATTAGATACTTATAAGCCCATATTAACCAAACCTTTTTAGATCACTTTTAATTGGACTTCAACTTAAGTGGCAGTCTACAATACATGATTTTTAAAATACAAGTCCAATGTTGGATTGATGATCCAACAATATTTACTCCGAAAGCAATTTAATTTTACCGCTTCTTGCATTTTTATATTGTTACCTCATCCTTACTCTTTCCAATCATTTCAATCAAGCTTTCGGAATTTTTCGCTAATCCAATGAGATTCTACTATTGACTTATATTTTTTTATTTATGTTTTTAAGAGTTTTCTAGCACTATGATTCATACCTCATTCATTCTATTATTACCTTTGCTCTTCTAATGATCTCCTCTGCACAGGCTGAAGACTTGAAGAAATCTCTTTCGGAAAAGAATGTCCCTGCTGAAGTGTACGTTGGCATGCGTTACTGGCATCCATTCACTGAGGAAGCTATTGAACAGGTACTTGATGATCTCATTCTTAGTTCATAATGTAAAAACTCTGATAGAATTTGATAAAGATTATGCCACCAGGGATTCTCCTACCTGCTATCGCTCTACAATACGAGTTAAAAAATGTCACTGCATGCTTTGTAATCTAAAATAAAGGTAGCAAAATATTTATAAATAATCAAAGAAATCAAGAATACTGACCTGATCACATTGTTGAAACCTGATTATAATTATTTTCCTATTGAAACATATTGTGTAGATTAAAAAGGATGGAGTTACAAAGCTGGTCGTTCTCCCACTTTATCCACAATTTTCAATATCAACCAGTGGCTCAAGCTTACGTCTACTGGAGAGTATATTCCGGTGATTACTTTTATTACCCACGTTAAATATTCTTCAAATATATAAGTATCAAACTTCATGTTATGATTTGAATTATGAATTGGTCCTTCAGAGAGGATGAGTATCTAGTCAACATGCAGCACACAGTATTACCTTCATGGTATCAACGTGAAGGATACATAAAGGCCATGTCAAATTTAATTGAAAAAGAACTGAAGAGTTTTGACTGCCCTAAAGAGGTAGTGTACTTTTTACCTTATGTAGTTTCAACGACTTCATGGAAACTGTGAAATGCCAATTTATGCCCAAAAAAAAAATGTGTTGTTTTTGTTGAGATTCATGTGATAACAATTTTGGTTATTCCTGTTTCTCTTTGTTAGGGATTGCTAAGAAGTAGCTCTCAAATTGAGTTGCATTTTTCATTGCTGGCTGTGTGTGCTTTAATTCCAAGTAATTTGTGCAGGTCATGATATTTTTTAGTGCACATGGGGTGCCTCTTGCTTATGTGGAAGAGGCCGGTGATCCTTACAAGGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAGCTTGAGACAAGAAAGATAAGAAATCCCTTCACCCTTGCCTATCAGGTAATTTTTTTTTTCTGCTTTTGATTCTGCTGTTGTTTCGTTTTCTATAACTTTTTTATCTTTAGATGTTATTCATTATGCAATAATTTCTGAACAGTTCATGAAGTTTTCTTGGTTTCTAGTAATTGACTATAATAATAATTCTTCTTACAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTATACAGATGAGACAATAGTTGAACTTGGAAAAAAAGGAGTGAAAAGTATGTTGGCTGTTCCAATTAGGTAAATACATTAGTTTACTCGTGTCACAATTTCTTTTGTTATCTTTCTCGCCCTTTTTCTTAGACCTGACTAGTATTTTGTTTTGTTAACTCGTGCGGCTTTATTCACTTGCAGCTTTGTCAGTGAACATATTGAAACTCTAGAAGAAATTGATGTTGAATACAAAGAATTGGCTCTAGAATCTGGTATAGAAAATTGGGGCCGTGTTCCTGCTCTAGGATGTGAACCCTCCTTCATTTCTGATTTGGCAGATGCTGTTATTGAAAGTCTCCCACATGCTGGTGCCATGGCAGTTTCAAGCCTCGAAGCTCGACAGGTATTCTTTTCAATTAGATATAGTCGGTTTAATAACTTTTTAGTCTCTGTAATATGCATCTTCTTTGTTTTTAGTCTCAAAAGATCGGCGTTTTCAATCCATGAAACATATGAATATGATATAATACTTTTTGTCCTTGTTTTAGTTTTAGTCTTGTAGTATTTGATCTATTTTGGAATTAATCTTTCTAATATGGGGAACATGTATGTTTAAATCTCTGGAATCTGGCATCTTGTGATGATCTAATTGAAAGTATATTATCTTTGGCAGTCTTTGGTTCCGCTCGGAAGTGTACAAGAGTTATTGGCAGCATATGACTCGCAAAATAAGGAGTTGCCATCGCCGGTGATAGTGTGGGAATGGGGTTTGACAAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGTTAGCTGTGCTGCTTCTTTTGTTTTTTGAAGTCACGACACCTGATAGTGTTTTTCACCAATGGGGAATATTATCGCCCTCTCTTAGGTGA

Protein sequence

>MS.gene06332.t1

MKLQTPTHATLSPSTSSASYTLNNASPNFKRPPLSPQAICTSQKKSFCSGAHVEASVNNNPVKNYIAASFSSLRSEAKPLVSNQSLKKHMFSVGALVARTDQDVSDATLTSDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRIFSFLQKPLAQFVSVLRAPKSREGYASIGGGSPLRRITDAQAEDLKKSLSEKNVPAEVYVGMRYWHPFTEEAIEQIKKDGVTKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVLPSWYQREGYIKAMSNLIEKELKSFDCPKEVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELETRKIRNPFTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSMLAVPISFVSEHIETLEEIDVEYKELALESGIENWGRVPALGCEPSFISDLADAVIESLPHAGAMAVSSLEARQSLVPLGSVQELLAAYDSQNKELPSPVIVWEWGLTKSAETWNGRAAMLAVLLLLFFEVTTPDSVFHQWGILSPSLR