AlfalfaGEDB | MS.gene41455

M. sativa cultivar XinJiangDaYe / MS.gene41455

KEGG: K03238
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0005488 GO:0006413 GO:0008135 GO:0008150 GO:0008152 GO:0009987 GO:0044237 GO:0045182 GO:0090079 GO:0097159 GO:1901363
PFAM: PF01873.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41455.t1	XP_013460480.1	93.7	270	16	1	1	270	1	269	1.10E-127	466.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41455.t1	P55871	74.1	270	68	2	1	268	1	270	1.1e-99	364.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41455.t1	A0A072UZG4	93.7	270	16	1	1	270	1	269	8.1e-128	466.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene41455	0.811463	6.91E-51	-1.69E-46
MS.gene049341	MS.gene41455	0.801072	1.07E-48	-1.69E-46
MS.gene049756	MS.gene41455	0.804868	1.76E-49	-1.69E-46
MS.gene049825	MS.gene41455	0.842737	2.15E-58	-1.69E-46
MS.gene049873	MS.gene41455	0.813999	1.93E-51	-1.69E-46
MS.gene050277	MS.gene41455	0.88829	6.73E-73	-1.69E-46
MS.gene050303	MS.gene41455	0.861786	8.03E-64	-1.69E-46
MS.gene050916	MS.gene41455	0.805647	1.21E-49	-1.69E-46
MS.gene051063	MS.gene41455	0.833661	4.69E-56	-1.69E-46
MS.gene051241	MS.gene41455	0.804683	1.92E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene003452	MS.gene41455	PPI
MS.gene018560	MS.gene41455	PPI
MS.gene025997	MS.gene41455	PPI
MS.gene040581	MS.gene41455	PPI
MS.gene063366	MS.gene41455	PPI
MS.gene066163	MS.gene41455	PPI
MS.gene09852	MS.gene41455	PPI
MS.gene41455	MS.gene22877	PPI
MS.gene41455	MS.gene039110	PPI
MS.gene41455	MS.gene63721	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41455.t1	MTR_3g467620	98.148	270	4	1	1	270	1	269	0.0	540
MS.gene41455.t1	MTR_5g075530	83.942	274	39	3	1	269	49	322	4.67e-147	414
MS.gene41455.t1	MTR_5g075530	77.457	173	34	3	1	168	49	221	6.43e-68	210

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41455.t1	AT5G20920	75.000	268	62	5	1	265	1	266	2.26e-131	373
MS.gene41455.t1	AT5G20920	75.000	268	62	5	1	265	1	266	2.26e-131	373
MS.gene41455.t1	AT5G20920	75.000	268	61	6	1	265	1	265	4.99e-130	369
MS.gene41455.t1	AT3G07920	70.395	152	37	2	118	265	17	164	9.98e-71	215
MS.gene41455.t1	AT5G01940	57.042	142	56	3	114	254	72	209	6.17e-49	161
MS.gene41455.t1	AT5G01940	57.042	142	56	3	114	254	104	241	8.98e-49	162
MS.gene41455.t1	AT5G01940	53.846	156	63	4	114	262	72	225	9.80e-47	156

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Find 58 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCCTTCGAAGTTCTT+TGG	0.281091	3.1:+52224048	None:intergenic
AAGAAAGCCATGACATGATC+TGG	0.453989	3.1:+52224141	None:intergenic
AAGATCAGTTGCACCTATCA+AGG	0.492968	3.1:-52223264	MS.gene41455:CDS
AATCTGTGCTTCATCTGCCA+TGG	0.597125	3.1:+52226106	None:intergenic
ACAGATTGATGTGAAGGAAG+AGG	0.574813	3.1:-52226090	MS.gene41455:CDS
ACAGCAGAGATTGGTTGTGA+AGG	0.584946	3.1:-52224082	MS.gene41455:CDS
ACCGACGGAGAACTGTTATG+AGG	0.549889	3.1:-52224560	MS.gene41455:CDS
AGAACCGTTTGTTCTTTCTC+CGG	0.497985	3.1:-52223871	MS.gene41455:CDS
AGAGATTGGTTGTGAAGGGA+AGG	0.537518	3.1:-52224077	MS.gene41455:CDS
ATCATCAAGATCTACCACTG+CGG	0.727185	3.1:+52225779	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTCCTTCGAAGTTCTT+TGG	+	chr3.1:52225276-52225295	None:intergenic	30.0%
ATATATCAGTAAGTATCTCG+TGG	-	chr3.1:52225302-52225321	MS.gene41455:intron	30.0%
CAATAATTCAAATGACCTAC+AGG	+	chr3.1:52223789-52223808	None:intergenic	30.0%
CAATTTAAGGAAATAAAGCG+GGG	-	chr3.1:52225954-52225973	MS.gene41455:intron	30.0%
CACAGCCTATAAAACTAATA+TGG	+	chr3.1:52224346-52224365	None:intergenic	30.0%
GCTACATGTATAATACATGT+AGG	-	chr3.1:52224886-52224905	MS.gene41455:intron	30.0%
GTAGGTCATTTGAATTATTG+TGG	-	chr3.1:52223789-52223808	MS.gene41455:intron	30.0%
GTTTCTCTTATAGTCTTTCT+AGG	-	chr3.1:52225695-52225714	MS.gene41455:intron	30.0%
TAACAAATTCAGGCATTAGA+AGG	+	chr3.1:52223472-52223491	None:intergenic	30.0%
TAACATCACCCTACAATTTA+AGG	-	chr3.1:52225941-52225960	MS.gene41455:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	52223217	52226126	52223217	ID=MS.gene41455
chr3.1	mRNA	52223217	52226126	52223217	ID=MS.gene41455.t1;Parent=MS.gene41455
chr3.1	exon	52226082	52226126	52226082	ID=MS.gene41455.t1.exon1;Parent=MS.gene41455.t1
chr3.1	CDS	52226082	52226126	52226082	ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1	exon	52225736	52225844	52225736	ID=MS.gene41455.t1.exon2;Parent=MS.gene41455.t1
chr3.1	CDS	52225736	52225844	52225736	ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1	exon	52225555	52225610	52225555	ID=MS.gene41455.t1.exon3;Parent=MS.gene41455.t1
chr3.1	CDS	52225555	52225610	52225555	ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1	exon	52225361	52225418	52225361	ID=MS.gene41455.t1.exon4;Parent=MS.gene41455.t1
chr3.1	CDS	52225361	52225418	52225361	ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1	exon	52225181	52225269	52225181	ID=MS.gene41455.t1.exon5;Parent=MS.gene41455.t1
chr3.1	CDS	52225181	52225269	52225181	ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1	exon	52224492	52224637	52224492	ID=MS.gene41455.t1.exon6;Parent=MS.gene41455.t1
chr3.1	CDS	52224492	52224637	52224492	ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1	exon	52224034	52224176	52224034	ID=MS.gene41455.t1.exon7;Parent=MS.gene41455.t1
chr3.1	CDS	52224034	52224176	52224034	ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1	exon	52223862	52223947	52223862	ID=MS.gene41455.t1.exon8;Parent=MS.gene41455.t1
chr3.1	CDS	52223862	52223947	52223862	ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1	exon	52223217	52223297	52223217	ID=MS.gene41455.t1.exon9;Parent=MS.gene41455.t1
chr3.1	CDS	52223217	52223297	52223217	ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1

Gene Sequence

>MS.gene41455

ATGGCAGATGAAGCACAGATTGATGTGAAGGAAGAGGTTCCTGATGTAAGTTTGCACAATTGATTTTGGTAGTTTTATGCATTGGCTTTCCTATACATGTTTCATGTGACTGGTTATAACTTATAAGGCTTTTTTTAAATTATATAATGCGAATTGCTATTTCTGAGTATGACTTTTTAGTGACTTGTATTCTTAGTTGGTGCTTCAAATCTCTTTGATTTGTTGGCGCTTTAGTTTGTTGAAATTGTACTACCTTCTAATGCCTGAATTTGTTAATTGCAGATTGCACCATTTGATCCTACTAAAAAGAAGAAGAAAAAGAAGCCCGCAGTGGTAGATCTTGATGATGATTCAGTAGACAAGTTGGCTGAGAAGACAGAAAATCTGTCAGGTATGGAAATTGAAATAGCATTTGTTTTATTTTATGCTATTAAGTTTTGGTCTTTAATGTTATTTTCTGAGGCATCTGTTATTGTGCCTGTCCTTGAACAGTTCTAATTAGCCTTTTAACTGCAGTTTCTGAGGGGTTTGACAGTACTTTAGCTGGTTCGAAAAAGAAGAAGAAGAAGCCTGTAGGTCATTTGAATTATTGTGGTTACGTTAACAAATATTTTTTTCACTCTTGCAATGTCTTAAGCTGTTGAGCTTTTGATGTTGCTATTTCTTTTGTTTGAAACAGTTTCACAATATTTTTATTGTTGATTGTAGGTTGAAATCAGTAGCTTAATTGATGAGAGTGTTGATGCGAAAAATGACGATTTGGATGGTAAGCCAACTCTCAAACACAATTTATATCATGCCTTAATTCTTAAGGGAAATTAATTGGAAGCTGAAGATTTTGTATATTATCTCCTCAGATCATGCTGAAGAGAATGAAGGGGATGCTGTTTCCTTGCAACCTCGTTACCCTTGGGAAGGAAGTGATCGTGATTATCAATACGAGGAGGTATAAAATATTTTGCATGCTTTCTGTTGTGATATGCCTCTCCCTTGAAATGCGGTGTAAAATTATTCTCTAATGCTCATACCCTCACCTAGTTCCATAAATGTTTCTCAACTGAATTATCTTTTTATGCTACTTTTCATATTTGGATAGTGGTTCTTGTGGATCTCAACTTTTATGTCGCCATATTAGTTTTATAGGCTGTGTTTTGGGTGGGGTCTTTGCATATTTTGGAATTTTTAACATGGAACTTATTGTGTGACGATCTACATCTACCTCCTCAAATATGTGTTTATATGGATTCTGCTCTCAAGGGTGTGTTTGTGTGACTTTATAGTGTCAAGTTTATTGAGTCGTTGTTGTATTATTGGTGTGGGTTCTCCAACAATAGCTTCATGATATATTATTAAGTATTTTTACTTTCTCTACTTTTGCTCTTTGTTGGTTGAAATGTTTTGCATTTTCTTCTGTTATCATAGGTAGTATTTGTTTATTTTTGGTTGTATTTTGTTTCATCTCTCTGCATTCTGATATTTTTCTGTGCAGCTTTTGGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTTGCTGGAGACCGACGGAGAACTGTTATGAGGCCTCCACAAGTGCTTCGTGAGGGCACAAAGAAAACTGTTTTTGTGAATTTTATGGACCTTTGCAAAACGTATGTTGATTTGTAATTTATTATTCAGTTGTTGGCTACATGTATAATACATGTAGGCATGTTTTTATGGACAAAACCTAGACGCATTTTCTTAGGTGATTTTGGTGTTGTTCTTAACTTGAAATATATTCATGATTTCTTTAAATCCCTAATTTTCTCAAATAACTACAAAGTGTATTTTAATTTAAGAACAACATAAAAAGCACATCAGGAAAAACATCTAAGTTTTGTTTATTTTCCTTTCTATATTGCATTAAAATCCTACTTTTGTCTTCCATTATCATTTTGTTTATGTCTTGCTACCTTGTCTTTTAGGATGCATCGGCAGCCAGATCATGTCATGGCTTTCTTGCTTGCGGAACTGGGTACAAGTGGTTCTCTAGATGGACAGCAGAGATTGGTTGTGAAGGGAAGGTTTGCACCAAAGAACTTCGAAGGAATTTTGCGTCGATATATCAGTAAGTATCTCGTGGATCTTGAATTTCTGTATATGAAGTATAAAGCCTTCGAGTAAAAATTGACCTATATATTTTGTTCTTTTTAGATGAATATGTCATTTGCCTTGGATGCAAAAGTCCTGACACAATACTGTCAAAGGAGAACCGTTTGTTCTTTCTCCGGTGTGAAAAGGTGAAATTTCTATGCTCCTATTCCCTCTCTATGTATATCTCTGCAACCTACGGAAATTGTAGAGCGCCGGTGAATTGGTTCCTGAAATTAAGAAATTGATAACCAAGCCTTATCCCATTGAGTGGGGTTGGCTACATGAATCAAACAACGCCATAGTGTTCTATCAAAAAACATGTCTTCTCCAACTCATTAATCTTTAGGTCCTTTTTAATAGTTTCTCTTATAGTCTTTCTAGGTCTTCCTCTAGGTCTCCAACTCATATATCCTGTAGGAAAATGTTTCAAATTAGTTCATGCTTCCTTAAGTTGAATATTTCAAATCCAATTGATCCATGAAAAATTGCTTATGAAAGTTGAATTAGTTCTCATGTTAGCTTAACATAGTACATAACTTATGAATGACTAAAATGACCGAACAATTTCAATGATATTTTCCGTAATTTGTTTTTAGAGACTGATCTAACATCACCCTACAATTTAAGGAAATAAAGCGGGGCTAAACTCAACAAATATCTTTTACTTTATGATGATGGGATATCTTATAATTGTAGTGTATTGCTTGCAGTGTGGATCAGGAAGATCAGTTGCACCTATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGTAGGACTGCGGGAGGGACATGA

Protein sequence

>MS.gene41455.t1

MADEAQIDVKEEVPDIAPFDPTKKKKKKKPAVVDLDDDSVDKLAEKTENLSVSEGFDSTLAGSKKKKKKPVEISSLIDESVDAKNDDLDDHAEENEGDAVSLQPRYPWEGSDRDYQYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRTAGGT