AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41455


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41455.t1 MTR_3g467620 98.148 270 4 1 1 270 1 269 0.0 540
MS.gene41455.t1 MTR_5g075530 83.942 274 39 3 1 269 49 322 4.67e-147 414
MS.gene41455.t1 MTR_5g075530 77.457 173 34 3 1 168 49 221 6.43e-68 210
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41455.t1 AT5G20920 75.000 268 62 5 1 265 1 266 2.26e-131 373
MS.gene41455.t1 AT5G20920 75.000 268 62 5 1 265 1 266 2.26e-131 373
MS.gene41455.t1 AT5G20920 75.000 268 61 6 1 265 1 265 4.99e-130 369
MS.gene41455.t1 AT3G07920 70.395 152 37 2 118 265 17 164 9.98e-71 215
MS.gene41455.t1 AT5G01940 57.042 142 56 3 114 254 72 209 6.17e-49 161
MS.gene41455.t1 AT5G01940 57.042 142 56 3 114 254 104 241 8.98e-49 162
MS.gene41455.t1 AT5G01940 53.846 156 63 4 114 262 72 225 9.80e-47 156

Find 58 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTTTCTTGCTTGCGGAAC+TGG 0.130326 3.1:-52224127 MS.gene41455:CDS
AAAATTCCTTCGAAGTTCTT+TGG 0.281091 3.1:+52224048 None:intergenic
CGTCGGTCTCCAGCAAGTTC+TGG 0.286919 3.1:+52224576 None:intergenic
TCCTTTGACAGTATTGTGTC+AGG 0.386643 3.1:+52223893 None:intergenic
CCTTGCAACCTCGTTACCCT+TGG 0.397283 3.1:-52225214 MS.gene41455:CDS
GAGAATAATCCAGAACTTGC+TGG 0.427102 3.1:-52224585 MS.gene41455:CDS
GATGAATATGTCATTTGCCT+TGG 0.446437 3.1:-52223926 MS.gene41455:CDS
GGGTTTGACAGTACTTTAGC+TGG 0.446946 3.1:-52225580 MS.gene41455:CDS
GCAACAAAACCAGCCTTGAT+AGG 0.448200 3.1:+52223251 None:intergenic
GTTCTTTCTCCGGTGTGAAA+AGG 0.449900 3.1:-52223861 MS.gene41455:intron
AAGAAAGCCATGACATGATC+TGG 0.453989 3.1:+52224141 None:intergenic
GGTACAAGTGGTTCTCTAGA+TGG 0.461160 3.1:-52224105 MS.gene41455:CDS
CTTGCAACCTCGTTACCCTT+GGG 0.463993 3.1:-52225213 MS.gene41455:CDS
CGTGTTGGCCGTAGGACTGC+GGG 0.465591 3.1:-52223227 MS.gene41455:CDS
TCTAGATGGACAGCAGAGAT+TGG 0.466810 3.1:-52224091 MS.gene41455:CDS
TATTGCTTGCAGTGTGGATC+AGG 0.472397 3.1:-52223287 MS.gene41455:intron
GCTTTCTTGCTTGCGGAACT+GGG 0.492020 3.1:-52224126 MS.gene41455:CDS
AAGATCAGTTGCACCTATCA+AGG 0.492968 3.1:-52223264 MS.gene41455:CDS
TGTCATGGCTTTCTTGCTTG+CGG 0.497308 3.1:-52224133 MS.gene41455:CDS
AGAACCGTTTGTTCTTTCTC+CGG 0.497985 3.1:-52223871 MS.gene41455:CDS
GTGCCCTCACGAAGCACTTG+TGG 0.500600 3.1:+52224534 None:intergenic
CACACCGGAGAAAGAACAAA+CGG 0.501705 3.1:+52223867 None:intergenic
TTGTTGCTCGTGTTGGCCGT+AGG 0.510944 3.1:-52223235 MS.gene41455:CDS
TCAGTTGCACCTATCAAGGC+TGG 0.525265 3.1:-52223260 MS.gene41455:CDS
ATGTCCCTCCCGCAGTCCTA+CGG 0.525965 3.1:+52223219 None:intergenic
GATCATGCTGAAGAGAATGA+AGG 0.536109 3.1:-52225248 MS.gene41455:CDS
AGAGATTGGTTGTGAAGGGA+AGG 0.537518 3.1:-52224077 MS.gene41455:CDS
GAGAAGACAGAAAATCTGTC+AGG 0.538239 3.1:-52225735 MS.gene41455:intron
ATCATGCTGAAGAGAATGAA+GGG 0.539765 3.1:-52225247 MS.gene41455:CDS
TCCTGACACAATACTGTCAA+AGG 0.542246 3.1:-52223894 MS.gene41455:CDS
CAGCAGAGATTGGTTGTGAA+GGG 0.544525 3.1:-52224081 MS.gene41455:CDS
TCATCAAGATCTACCACTGC+GGG 0.548138 3.1:+52225780 None:intergenic
ACCGACGGAGAACTGTTATG+AGG 0.549889 3.1:-52224560 MS.gene41455:CDS
TGAAGCACAGATTGATGTGA+AGG 0.549994 3.1:-52226096 MS.gene41455:CDS
CCCTCACGAAGCACTTGTGG+AGG 0.572134 3.1:+52224537 None:intergenic
ACAGATTGATGTGAAGGAAG+AGG 0.574813 3.1:-52226090 MS.gene41455:CDS
TCGTGTTGGCCGTAGGACTG+CGG 0.579876 3.1:-52223228 MS.gene41455:CDS
GCCTCCACAAGTGCTTCGTG+AGG 0.584535 3.1:-52224538 MS.gene41455:CDS
ACAGCAGAGATTGGTTGTGA+AGG 0.584946 3.1:-52224082 MS.gene41455:CDS
CTTGCGGAACTGGGTACAAG+TGG 0.589169 3.1:-52224117 MS.gene41455:CDS
CACGATCACTTCCTTCCCAA+GGG 0.589285 3.1:+52225198 None:intergenic
GCCTCATAACAGTTCTCCGT+CGG 0.590654 3.1:+52224559 None:intergenic
CAACCTCGTTACCCTTGGGA+AGG 0.592495 3.1:-52225209 MS.gene41455:CDS
TTTGCACCAAAGAACTTCGA+AGG 0.593663 3.1:-52224054 MS.gene41455:CDS
TCACGATCACTTCCTTCCCA+AGG 0.596987 3.1:+52225197 None:intergenic
AATCTGTGCTTCATCTGCCA+TGG 0.597125 3.1:+52226106 None:intergenic
CCAAGGGTAACGAGGTTGCA+AGG 0.598454 3.1:+52225214 None:intergenic
TGATGATTCAGTAGACAAGT+TGG 0.613548 3.1:-52225760 MS.gene41455:CDS
CTTCCTTCCCAAGGGTAACG+AGG 0.616919 3.1:+52225206 None:intergenic
CCTCCACAAGTGCTTCGTGA+GGG 0.624335 3.1:-52224537 MS.gene41455:CDS
CAGAACTTGCTGGAGACCGA+CGG 0.631347 3.1:-52224575 MS.gene41455:CDS
TCATGCTGAAGAGAATGAAG+GGG 0.642946 3.1:-52225246 MS.gene41455:CDS
GTTGGCCGTAGGACTGCGGG+AGG 0.652534 3.1:-52223224 MS.gene41455:CDS
TCGGCAGCCAGATCATGTCA+TGG 0.653346 3.1:-52224148 MS.gene41455:CDS
TGATCGTGATTATCAATACG+AGG 0.718816 3.1:-52225183 MS.gene41455:CDS
ATCATCAAGATCTACCACTG+CGG 0.727185 3.1:+52225779 None:intergenic
TTGGCCGTAGGACTGCGGGA+GGG 0.729821 3.1:-52223223 MS.gene41455:CDS
TCGTGATTATCAATACGAGG+AGG 0.739399 3.1:-52225180 MS.gene41455:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATCATTGAAATTGTT+CGG + chr3.1:52225895-52225914 None:intergenic 15.0%
!! CTAAAAAGAACAAAATATAT+AGG + chr3.1:52225376-52225395 None:intergenic 15.0%
!! TATAAGAGAAACTATTAAAA+AGG + chr3.1:52225687-52225706 None:intergenic 15.0%
!!! ATATTTTGGAATTTTTAACA+TGG - chr3.1:52224385-52224404 MS.gene41455:intron 15.0%
!!! ATATTTTTATTGTTGATTGT+AGG - chr3.1:52223903-52223922 MS.gene41455:CDS 15.0%
!!! TATTTTATGCTATTAAGTTT+TGG - chr3.1:52223635-52223654 MS.gene41455:intron 15.0%
!! AATTCTTAAGGGAAATTAAT+TGG - chr3.1:52224020-52224039 MS.gene41455:intron 20.0%
!! AGACATAAACAAAATGATAA+TGG + chr3.1:52225129-52225148 None:intergenic 20.0%
!! GTAATTTATTATTCAGTTGT+TGG - chr3.1:52224864-52224883 MS.gene41455:intron 20.0%
!! GTAGTTATTTGAGAAAATTA+GGG + chr3.1:52225001-52225020 None:intergenic 20.0%
!! GTTATCAATTTCTTAATTTC+AGG + chr3.1:52225565-52225584 None:intergenic 20.0%
!! TACAATTTAAGGAAATAAAG+CGG - chr3.1:52225952-52225971 MS.gene41455:intron 20.0%
!! TGTAGTTATTTGAGAAAATT+AGG + chr3.1:52225002-52225021 None:intergenic 20.0%
!! TTAATTTCCCTTAAGAATTA+AGG + chr3.1:52224019-52224038 None:intergenic 20.0%
!!! AACTGTTTTTGTGAATTTTA+TGG - chr3.1:52224816-52224835 MS.gene41455:intron 20.0%
!!! AGGTAGTATTTGTTTATTTT+TGG - chr3.1:52224637-52224656 MS.gene41455:intron 20.0%
!!! ATCTTTTACTTTATGATGAT+GGG - chr3.1:52225992-52226011 MS.gene41455:intron 20.0%
!!! CTTTATTTCCTTAAATTGTA+GGG + chr3.1:52225952-52225971 None:intergenic 20.0%
!!! GATTTGAAATATTCAACTTA+AGG + chr3.1:52225783-52225802 None:intergenic 20.0%
!!! GATTTTAATGCAATATAGAA+AGG + chr3.1:52225093-52225112 None:intergenic 20.0%
!!! TATCTTTTACTTTATGATGA+TGG - chr3.1:52225991-52226010 MS.gene41455:intron 20.0%
!!! TTTATGCTACTTTTCATATT+TGG - chr3.1:52224286-52224305 MS.gene41455:intron 20.0%
!!! TTTTTCTTCTTCTTTTTAGT+AGG + chr3.1:52223517-52223536 None:intergenic 20.0%
! AATCTGCAATTAACAAATTC+AGG + chr3.1:52223482-52223501 None:intergenic 25.0%
! ACAATTTAAGGAAATAAAGC+GGG - chr3.1:52225953-52225972 MS.gene41455:intron 25.0%
! ATATAAACACATATTTGAGG+AGG + chr3.1:52224438-52224457 None:intergenic 25.0%
! ATATATCATGAAGCTATTGT+TGG + chr3.1:52224544-52224563 None:intergenic 25.0%
! ATATCATGCCTTAATTCTTA+AGG - chr3.1:52224008-52224027 MS.gene41455:intron 25.0%
! ATTCAGTTGAGAAACATTTA+TGG + chr3.1:52224260-52224279 None:intergenic 25.0%
! TATAAATTGTGTTTGAGAGT+TGG + chr3.1:52223991-52224010 None:intergenic 25.0%
! TATCATGCCTTAATTCTTAA+GGG - chr3.1:52224009-52224028 MS.gene41455:intron 25.0%
! TCCATATAAACACATATTTG+AGG + chr3.1:52224441-52224460 None:intergenic 25.0%
! TCCTCAAATATGTGTTTATA+TGG - chr3.1:52224437-52224456 MS.gene41455:intron 25.0%
!! CAGTCTCTAAAAACAAATTA+CGG + chr3.1:52225918-52225937 None:intergenic 25.0%
!! CTTTCATAAGCAATTTTTCA+TGG + chr3.1:52225814-52225833 None:intergenic 25.0%
!! TACTTTTCATATTTGGATAG+TGG - chr3.1:52224293-52224312 MS.gene41455:intron 25.0%
!!! AATTTGAAACATTTTCCTAC+AGG + chr3.1:52225749-52225768 None:intergenic 25.0%
!!! ATTTTGGTAGTTTTATGCAT+TGG - chr3.1:52223279-52223298 MS.gene41455:intron 25.0%
!!! GCTTTATTTCCTTAAATTGT+AGG + chr3.1:52225953-52225972 None:intergenic 25.0%
!!! GTCTTTAATGTTATTTTCTG+AGG - chr3.1:52223657-52223676 MS.gene41455:intron 25.0%
!!! TAAGTTTGCACAATTGATTT+TGG - chr3.1:52223263-52223282 MS.gene41455:CDS 25.0%
!!! TGTTTTTTGATAGAACACTA+TGG + chr3.1:52225635-52225654 None:intergenic 25.0%
!!! TTCAAATCTCTTTGATTTGT+TGG - chr3.1:52223420-52223439 MS.gene41455:intron 25.0%
!!! TTCTTTTTAGTAGGATCAAA+TGG + chr3.1:52223508-52223527 None:intergenic 25.0%
AAAATTCCTTCGAAGTTCTT+TGG + chr3.1:52225276-52225295 None:intergenic 30.0%
ATATATCAGTAAGTATCTCG+TGG - chr3.1:52225302-52225321 MS.gene41455:intron 30.0%
CAATAATTCAAATGACCTAC+AGG + chr3.1:52223789-52223808 None:intergenic 30.0%
CAATTTAAGGAAATAAAGCG+GGG - chr3.1:52225954-52225973 MS.gene41455:intron 30.0%
CACAGCCTATAAAACTAATA+TGG + chr3.1:52224346-52224365 None:intergenic 30.0%
GCTACATGTATAATACATGT+AGG - chr3.1:52224886-52224905 MS.gene41455:intron 30.0%
GTAGGTCATTTGAATTATTG+TGG - chr3.1:52223789-52223808 MS.gene41455:intron 30.0%
GTTTCTCTTATAGTCTTTCT+AGG - chr3.1:52225695-52225714 MS.gene41455:intron 30.0%
TAACAAATTCAGGCATTAGA+AGG + chr3.1:52223472-52223491 None:intergenic 30.0%
TAACATCACCCTACAATTTA+AGG - chr3.1:52225941-52225960 MS.gene41455:intron 30.0%
TCTCCAACTCATTAATCTTT+AGG - chr3.1:52225660-52225679 MS.gene41455:intron 30.0%
TGAGAAACATTTATGGAACT+AGG + chr3.1:52224253-52224272 None:intergenic 30.0%
TTGAGTCGTTGTTGTATTAT+TGG - chr3.1:52224508-52224527 MS.gene41455:CDS 30.0%
! AACAACATAAAAAGCACATC+AGG - chr3.1:52225041-52225060 MS.gene41455:intron 30.0%
! AATCAACATACGTTTTGCAA+AGG + chr3.1:52224843-52224862 None:intergenic 30.0%
! AATTTTACACCGCATTTCAA+GGG + chr3.1:52224207-52224226 None:intergenic 30.0%
! ATAGGTCAATTTTTACTCGA+AGG + chr3.1:52225358-52225377 None:intergenic 30.0%
! ATATTTTTCTGTGCAGCTTT+TGG - chr3.1:52224690-52224709 MS.gene41455:intron 30.0%
! GCAATTTTTCATGGATCAAT+TGG + chr3.1:52225805-52225824 None:intergenic 30.0%
! GCATTTTCTTCTGTTATCAT+AGG - chr3.1:52224617-52224636 MS.gene41455:CDS 30.0%
! GTGACTGGTTATAACTTATA+AGG - chr3.1:52223322-52223341 MS.gene41455:intron 30.0%
! TAATTTTACACCGCATTTCA+AGG + chr3.1:52224208-52224227 None:intergenic 30.0%
! TAGTGACTTGTATTCTTAGT+TGG - chr3.1:52223394-52223413 MS.gene41455:intron 30.0%
! TATTTTTCTGTGCAGCTTTT+GGG - chr3.1:52224691-52224710 MS.gene41455:intron 30.0%
!! AGTTTTATAGGCTGTGTTTT+GGG - chr3.1:52224350-52224369 MS.gene41455:intron 30.0%
!! TACATGTAGGCATGTTTTTA+TGG - chr3.1:52224899-52224918 MS.gene41455:intron 30.0%
!! TGATAATGGAAGACAAAAGT+AGG + chr3.1:52225115-52225134 None:intergenic 30.0%
!!! TAGTTTTATAGGCTGTGTTT+TGG - chr3.1:52224349-52224368 MS.gene41455:intron 30.0%
!!! TGTCGCCATATTAGTTTTAT+AGG - chr3.1:52224338-52224357 MS.gene41455:intron 30.0%
AACATTTATGGAACTAGGTG+AGG + chr3.1:52224248-52224267 None:intergenic 35.0%
AATTAGAACTGTTCAAGGAC+AGG + chr3.1:52223697-52223716 None:intergenic 35.0%
AATTTCAGGAACCAATTCAC+CGG + chr3.1:52225551-52225570 None:intergenic 35.0%
ACATTTATGGAACTAGGTGA+GGG + chr3.1:52224247-52224266 None:intergenic 35.0%
AGGCTAATTAGAACTGTTCA+AGG + chr3.1:52223702-52223721 None:intergenic 35.0%
ATCATGCTGAAGAGAATGAA+GGG - chr3.1:52224074-52224093 MS.gene41455:CDS 35.0%
ATGTATATCTCTGCAACCTA+CGG - chr3.1:52225512-52225531 MS.gene41455:intron 35.0%
CAATTGTGCAAACTTACATC+AGG + chr3.1:52223259-52223278 None:intergenic 35.0%
CAGTCACATGAAACATGTAT+AGG + chr3.1:52223309-52223328 None:intergenic 35.0%
CGTTGTTGTATTATTGGTGT+GGG - chr3.1:52224514-52224533 MS.gene41455:CDS 35.0%
CTATACATGTTTCATGTGAC+TGG - chr3.1:52223307-52223326 MS.gene41455:intron 35.0%
GATATACATAGAGAGGGAAT+AGG + chr3.1:52225501-52225520 None:intergenic 35.0%
GGACCTAAAGATTAATGAGT+TGG + chr3.1:52225666-52225685 None:intergenic 35.0%
TATATGGATTCTGCTCTCAA+GGG - chr3.1:52224453-52224472 MS.gene41455:intron 35.0%
TCGTTGTTGTATTATTGGTG+TGG - chr3.1:52224513-52224532 MS.gene41455:CDS 35.0%
TGATCGTGATTATCAATACG+AGG - chr3.1:52224138-52224157 MS.gene41455:CDS 35.0%
TGATGATTCAGTAGACAAGT+TGG - chr3.1:52223561-52223580 MS.gene41455:intron 35.0%
TGATGCGAAAAATGACGATT+TGG - chr3.1:52223957-52223976 MS.gene41455:intron 35.0%
TGCAGAGATATACATAGAGA+GGG + chr3.1:52225507-52225526 None:intergenic 35.0%
TTATATGGATTCTGCTCTCA+AGG - chr3.1:52224452-52224471 MS.gene41455:intron 35.0%
TTCCTACAGGATATATGAGT+TGG + chr3.1:52225736-52225755 None:intergenic 35.0%
TTGCAGAGATATACATAGAG+AGG + chr3.1:52225508-52225527 None:intergenic 35.0%
! AAACCTAGACGCATTTTCTT+AGG - chr3.1:52224925-52224944 MS.gene41455:intron 35.0%
! CGCATTTTCTTAGGTGATTT+TGG - chr3.1:52224934-52224953 MS.gene41455:intron 35.0%
! GAAATTTCACCTTTTCACAC+CGG + chr3.1:52225472-52225491 None:intergenic 35.0%
! GATGAATATGTCATTTGCCT+TGG - chr3.1:52225395-52225414 MS.gene41455:CDS 35.0%
! TATTTGGATAGTGGTTCTTG+TGG - chr3.1:52224302-52224321 MS.gene41455:intron 35.0%
!! CTTTTAACTGCAGTTTCTGA+GGG - chr3.1:52223720-52223739 MS.gene41455:intron 35.0%
!! TCTCTACTTTTGCTCTTTGT+TGG - chr3.1:52224582-52224601 MS.gene41455:CDS 35.0%
!! TTTTAACTGCAGTTTCTGAG+GGG - chr3.1:52223721-52223740 MS.gene41455:intron 35.0%
AAGAAAGCCATGACATGATC+TGG + chr3.1:52225183-52225202 None:intergenic 40.0%
AAGAAGAAGAAGAAGCCTGT+AGG - chr3.1:52223771-52223790 MS.gene41455:intron 40.0%
AAGATCAGTTGCACCTATCA+AGG - chr3.1:52226057-52226076 MS.gene41455:intron 40.0%
ACAGATTGATGTGAAGGAAG+AGG - chr3.1:52223231-52223250 MS.gene41455:CDS 40.0%
AGAACCGTTTGTTCTTTCTC+CGG - chr3.1:52225450-52225469 MS.gene41455:intron 40.0%
ATCATCAAGATCTACCACTG+CGG + chr3.1:52223545-52223564 None:intergenic 40.0%
ATTCTCTTCAGCATGATCTG+AGG + chr3.1:52224071-52224090 None:intergenic 40.0%
CCTCAGAAACTGCAGTTAAA+AGG + chr3.1:52223722-52223741 None:intergenic 40.0%
CTCCAACTCATATATCCTGT+AGG - chr3.1:52225731-52225750 MS.gene41455:intron 40.0%
GACAGAAAATCTGTCAGGTA+TGG - chr3.1:52223591-52223610 MS.gene41455:intron 40.0%
GAGAAGACAGAAAATCTGTC+AGG - chr3.1:52223586-52223605 MS.gene41455:intron 40.0%
GAGAATAATCCAGAACTTGC+TGG - chr3.1:52224736-52224755 MS.gene41455:intron 40.0%
GATCATGCTGAAGAGAATGA+AGG - chr3.1:52224073-52224092 MS.gene41455:CDS 40.0%
TCACCTAAGAAAATGCGTCT+AGG + chr3.1:52224931-52224950 None:intergenic 40.0%
TCATGCTGAAGAGAATGAAG+GGG - chr3.1:52224075-52224094 MS.gene41455:CDS 40.0%
TCCTGACACAATACTGTCAA+AGG - chr3.1:52225427-52225446 MS.gene41455:intron 40.0%
TCCTTTGACAGTATTGTGTC+AGG + chr3.1:52225431-52225450 None:intergenic 40.0%
TCGTGATTATCAATACGAGG+AGG - chr3.1:52224141-52224160 MS.gene41455:CDS 40.0%
TGAAGCACAGATTGATGTGA+AGG - chr3.1:52223225-52223244 MS.gene41455:CDS 40.0%
TTTGCACCAAAGAACTTCGA+AGG - chr3.1:52225267-52225286 MS.gene41455:intron 40.0%
! GCGAAAAATGACGATTTGGA+TGG - chr3.1:52223961-52223980 MS.gene41455:intron 40.0%
! GTCTTGCTACCTTGTCTTTT+AGG - chr3.1:52225145-52225164 MS.gene41455:intron 40.0%
! TATATGAGTTGGAGACCTAG+AGG + chr3.1:52225725-52225744 None:intergenic 40.0%
!! CCTTTTAACTGCAGTTTCTG+AGG - chr3.1:52223719-52223738 MS.gene41455:intron 40.0%
!! TTATAGGCTGTGTTTTGGGT+GGG - chr3.1:52224354-52224373 MS.gene41455:intron 40.0%
!! TTTATAGGCTGTGTTTTGGG+TGG - chr3.1:52224353-52224372 MS.gene41455:intron 40.0%
!!! CCTTGTCTTTTAGGATGCAT+CGG - chr3.1:52225154-52225173 MS.gene41455:intron 40.0%
CACACCGGAGAAAGAACAAA+CGG + chr3.1:52225457-52225476 None:intergenic 45.0%
CCGATGCATCCTAAAAGACA+AGG + chr3.1:52225157-52225176 None:intergenic 45.0%
GCAACAAAACCAGCCTTGAT+AGG + chr3.1:52226073-52226092 None:intergenic 45.0%
GGGTTTGACAGTACTTTAGC+TGG - chr3.1:52223741-52223760 MS.gene41455:intron 45.0%
GGTACAAGTGGTTCTCTAGA+TGG - chr3.1:52225216-52225235 MS.gene41455:CDS 45.0%
GTAGTGTATTGCTTGCAGTG+TGG - chr3.1:52226028-52226047 MS.gene41455:intron 45.0%
GTCTTTCTAGGTCTTCCTCT+AGG - chr3.1:52225707-52225726 MS.gene41455:intron 45.0%
GTTCTTTCTCCGGTGTGAAA+AGG - chr3.1:52225460-52225479 MS.gene41455:intron 45.0%
TATGCCTCTCCCTTGAAATG+CGG - chr3.1:52224195-52224214 MS.gene41455:intron 45.0%
TATTGCTTGCAGTGTGGATC+AGG - chr3.1:52226034-52226053 MS.gene41455:intron 45.0%
TCATCAAGATCTACCACTGC+GGG + chr3.1:52223544-52223563 None:intergenic 45.0%
TCTAGATGGACAGCAGAGAT+TGG - chr3.1:52225230-52225249 MS.gene41455:CDS 45.0%
TGTCATGGCTTTCTTGCTTG+CGG - chr3.1:52225188-52225207 MS.gene41455:CDS 45.0%
! AAGCCTTATCCCATTGAGTG+GGG - chr3.1:52225586-52225605 MS.gene41455:CDS 45.0%
! ACAGCAGAGATTGGTTGTGA+AGG - chr3.1:52225239-52225258 MS.gene41455:CDS 45.0%
! AGAGATTGGTTGTGAAGGGA+AGG - chr3.1:52225244-52225263 MS.gene41455:CDS 45.0%
! CAAGCCTTATCCCATTGAGT+GGG - chr3.1:52225585-52225604 MS.gene41455:CDS 45.0%
! CAGCAGAGATTGGTTGTGAA+GGG - chr3.1:52225240-52225259 MS.gene41455:CDS 45.0%
! GGTGGGGTCTTTGCATATTT+TGG - chr3.1:52224371-52224390 MS.gene41455:intron 45.0%
! TGTCAGGACTTTTGCATCCA+AGG + chr3.1:52225415-52225434 None:intergenic 45.0%
!! TATAGGCTGTGTTTTGGGTG+GGG - chr3.1:52224355-52224374 MS.gene41455:intron 45.0%
ACCGACGGAGAACTGTTATG+AGG - chr3.1:52224761-52224780 MS.gene41455:intron 50.0%
ATGTAGCCAACCCCACTCAA+TGG + chr3.1:52225599-52225618 None:intergenic 50.0%
CAACCCCACTCAATGGGATA+AGG + chr3.1:52225592-52225611 None:intergenic 50.0%
CACGATCACTTCCTTCCCAA+GGG + chr3.1:52224126-52224145 None:intergenic 50.0%
CCACTCAATGGGATAAGGCT+TGG + chr3.1:52225587-52225606 None:intergenic 50.0%
CTACGGAAATTGTAGAGCGC+CGG - chr3.1:52225529-52225548 MS.gene41455:intron 50.0%
CTTATCCCATTGAGTGGGGT+TGG - chr3.1:52225590-52225609 MS.gene41455:CDS 50.0%
CTTGCAACCTCGTTACCCTT+GGG - chr3.1:52224108-52224127 MS.gene41455:CDS 50.0%
GAAGAAAAAGAAGCCCGCAG+TGG - chr3.1:52223528-52223547 MS.gene41455:intron 50.0%
GCCTCATAACAGTTCTCCGT+CGG + chr3.1:52224765-52224784 None:intergenic 50.0%
GCTTTCTTGCTTGCGGAACT+GGG - chr3.1:52225195-52225214 MS.gene41455:CDS 50.0%
TACACCGCATTTCAAGGGAG+AGG + chr3.1:52224202-52224221 None:intergenic 50.0%
TCACGATCACTTCCTTCCCA+AGG + chr3.1:52224127-52224146 None:intergenic 50.0%
TCAGTTGCACCTATCAAGGC+TGG - chr3.1:52226061-52226080 MS.gene41455:intron 50.0%
TGTAGCCAACCCCACTCAAT+GGG + chr3.1:52225598-52225617 None:intergenic 50.0%
! CCAAGCCTTATCCCATTGAG+TGG - chr3.1:52225584-52225603 MS.gene41455:CDS 50.0%
! TTCTGTGCAGCTTTTGGGCA+GGG - chr3.1:52224696-52224715 MS.gene41455:intron 50.0%
! TTTCTGTGCAGCTTTTGGGC+AGG - chr3.1:52224695-52224714 MS.gene41455:intron 50.0%
!! ATTGTAGAGCGCCGGTGAAT+TGG - chr3.1:52225537-52225556 MS.gene41455:intron 50.0%
!!! GCTGGTTTTGTTGCTCGTGT+TGG - chr3.1:52226079-52226098 MS.gene41455:intron 50.0%
CAACCTCGTTACCCTTGGGA+AGG - chr3.1:52224112-52224131 MS.gene41455:CDS 55.0%
CCAAGGGTAACGAGGTTGCA+AGG + chr3.1:52224110-52224129 None:intergenic 55.0%
CCTCCACAAGTGCTTCGTGA+GGG - chr3.1:52224784-52224803 MS.gene41455:intron 55.0%
CCTTGCAACCTCGTTACCCT+TGG - chr3.1:52224107-52224126 MS.gene41455:CDS 55.0%
CGGCGCTCTACAATTTCCGT+AGG + chr3.1:52225531-52225550 None:intergenic 55.0%
CTTCCTTCCCAAGGGTAACG+AGG + chr3.1:52224118-52224137 None:intergenic 55.0%
CTTGCGGAACTGGGTACAAG+TGG - chr3.1:52225204-52225223 MS.gene41455:CDS 55.0%
GGCTTTCTTGCTTGCGGAAC+TGG - chr3.1:52225194-52225213 MS.gene41455:CDS 55.0%
TCGGCAGCCAGATCATGTCA+TGG - chr3.1:52225173-52225192 MS.gene41455:intron 55.0%
! TTGTTGCTCGTGTTGGCCGT+AGG - chr3.1:52226086-52226105 MS.gene41455:CDS 55.0%
!! CAGAACTTGCTGGAGACCGA+CGG - chr3.1:52224746-52224765 MS.gene41455:intron 55.0%
ATGTCCCTCCCGCAGTCCTA+CGG + chr3.1:52226105-52226124 None:intergenic 60.0%
CGTCGGTCTCCAGCAAGTTC+TGG + chr3.1:52224748-52224767 None:intergenic 60.0%
GCCTCCACAAGTGCTTCGTG+AGG - chr3.1:52224783-52224802 MS.gene41455:intron 60.0%
! CCCTCACGAAGCACTTGTGG+AGG + chr3.1:52224787-52224806 None:intergenic 60.0%
! GTGCCCTCACGAAGCACTTG+TGG + chr3.1:52224790-52224809 None:intergenic 60.0%
! TCGTGTTGGCCGTAGGACTG+CGG - chr3.1:52226093-52226112 MS.gene41455:CDS 60.0%
TTGGCCGTAGGACTGCGGGA+GGG - chr3.1:52226098-52226117 MS.gene41455:CDS 65.0%
! CGTGTTGGCCGTAGGACTGC+GGG - chr3.1:52226094-52226113 MS.gene41455:CDS 65.0%
GTTGGCCGTAGGACTGCGGG+AGG - chr3.1:52226097-52226116 MS.gene41455:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 52223217 52226126 52223217 ID=MS.gene41455
chr3.1 mRNA 52223217 52226126 52223217 ID=MS.gene41455.t1;Parent=MS.gene41455
chr3.1 exon 52226082 52226126 52226082 ID=MS.gene41455.t1.exon1;Parent=MS.gene41455.t1
chr3.1 CDS 52226082 52226126 52226082 ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1 exon 52225736 52225844 52225736 ID=MS.gene41455.t1.exon2;Parent=MS.gene41455.t1
chr3.1 CDS 52225736 52225844 52225736 ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1 exon 52225555 52225610 52225555 ID=MS.gene41455.t1.exon3;Parent=MS.gene41455.t1
chr3.1 CDS 52225555 52225610 52225555 ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1 exon 52225361 52225418 52225361 ID=MS.gene41455.t1.exon4;Parent=MS.gene41455.t1
chr3.1 CDS 52225361 52225418 52225361 ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1 exon 52225181 52225269 52225181 ID=MS.gene41455.t1.exon5;Parent=MS.gene41455.t1
chr3.1 CDS 52225181 52225269 52225181 ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1 exon 52224492 52224637 52224492 ID=MS.gene41455.t1.exon6;Parent=MS.gene41455.t1
chr3.1 CDS 52224492 52224637 52224492 ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1 exon 52224034 52224176 52224034 ID=MS.gene41455.t1.exon7;Parent=MS.gene41455.t1
chr3.1 CDS 52224034 52224176 52224034 ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1 exon 52223862 52223947 52223862 ID=MS.gene41455.t1.exon8;Parent=MS.gene41455.t1
chr3.1 CDS 52223862 52223947 52223862 ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
chr3.1 exon 52223217 52223297 52223217 ID=MS.gene41455.t1.exon9;Parent=MS.gene41455.t1
chr3.1 CDS 52223217 52223297 52223217 ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1
Gene Sequence

>MS.gene41455

ATGGCAGATGAAGCACAGATTGATGTGAAGGAAGAGGTTCCTGATGTAAGTTTGCACAATTGATTTTGGTAGTTTTATGCATTGGCTTTCCTATACATGTTTCATGTGACTGGTTATAACTTATAAGGCTTTTTTTAAATTATATAATGCGAATTGCTATTTCTGAGTATGACTTTTTAGTGACTTGTATTCTTAGTTGGTGCTTCAAATCTCTTTGATTTGTTGGCGCTTTAGTTTGTTGAAATTGTACTACCTTCTAATGCCTGAATTTGTTAATTGCAGATTGCACCATTTGATCCTACTAAAAAGAAGAAGAAAAAGAAGCCCGCAGTGGTAGATCTTGATGATGATTCAGTAGACAAGTTGGCTGAGAAGACAGAAAATCTGTCAGGTATGGAAATTGAAATAGCATTTGTTTTATTTTATGCTATTAAGTTTTGGTCTTTAATGTTATTTTCTGAGGCATCTGTTATTGTGCCTGTCCTTGAACAGTTCTAATTAGCCTTTTAACTGCAGTTTCTGAGGGGTTTGACAGTACTTTAGCTGGTTCGAAAAAGAAGAAGAAGAAGCCTGTAGGTCATTTGAATTATTGTGGTTACGTTAACAAATATTTTTTTCACTCTTGCAATGTCTTAAGCTGTTGAGCTTTTGATGTTGCTATTTCTTTTGTTTGAAACAGTTTCACAATATTTTTATTGTTGATTGTAGGTTGAAATCAGTAGCTTAATTGATGAGAGTGTTGATGCGAAAAATGACGATTTGGATGGTAAGCCAACTCTCAAACACAATTTATATCATGCCTTAATTCTTAAGGGAAATTAATTGGAAGCTGAAGATTTTGTATATTATCTCCTCAGATCATGCTGAAGAGAATGAAGGGGATGCTGTTTCCTTGCAACCTCGTTACCCTTGGGAAGGAAGTGATCGTGATTATCAATACGAGGAGGTATAAAATATTTTGCATGCTTTCTGTTGTGATATGCCTCTCCCTTGAAATGCGGTGTAAAATTATTCTCTAATGCTCATACCCTCACCTAGTTCCATAAATGTTTCTCAACTGAATTATCTTTTTATGCTACTTTTCATATTTGGATAGTGGTTCTTGTGGATCTCAACTTTTATGTCGCCATATTAGTTTTATAGGCTGTGTTTTGGGTGGGGTCTTTGCATATTTTGGAATTTTTAACATGGAACTTATTGTGTGACGATCTACATCTACCTCCTCAAATATGTGTTTATATGGATTCTGCTCTCAAGGGTGTGTTTGTGTGACTTTATAGTGTCAAGTTTATTGAGTCGTTGTTGTATTATTGGTGTGGGTTCTCCAACAATAGCTTCATGATATATTATTAAGTATTTTTACTTTCTCTACTTTTGCTCTTTGTTGGTTGAAATGTTTTGCATTTTCTTCTGTTATCATAGGTAGTATTTGTTTATTTTTGGTTGTATTTTGTTTCATCTCTCTGCATTCTGATATTTTTCTGTGCAGCTTTTGGGCAGGGTGTTTAACATTCTACGTGAGAATAATCCAGAACTTGCTGGAGACCGACGGAGAACTGTTATGAGGCCTCCACAAGTGCTTCGTGAGGGCACAAAGAAAACTGTTTTTGTGAATTTTATGGACCTTTGCAAAACGTATGTTGATTTGTAATTTATTATTCAGTTGTTGGCTACATGTATAATACATGTAGGCATGTTTTTATGGACAAAACCTAGACGCATTTTCTTAGGTGATTTTGGTGTTGTTCTTAACTTGAAATATATTCATGATTTCTTTAAATCCCTAATTTTCTCAAATAACTACAAAGTGTATTTTAATTTAAGAACAACATAAAAAGCACATCAGGAAAAACATCTAAGTTTTGTTTATTTTCCTTTCTATATTGCATTAAAATCCTACTTTTGTCTTCCATTATCATTTTGTTTATGTCTTGCTACCTTGTCTTTTAGGATGCATCGGCAGCCAGATCATGTCATGGCTTTCTTGCTTGCGGAACTGGGTACAAGTGGTTCTCTAGATGGACAGCAGAGATTGGTTGTGAAGGGAAGGTTTGCACCAAAGAACTTCGAAGGAATTTTGCGTCGATATATCAGTAAGTATCTCGTGGATCTTGAATTTCTGTATATGAAGTATAAAGCCTTCGAGTAAAAATTGACCTATATATTTTGTTCTTTTTAGATGAATATGTCATTTGCCTTGGATGCAAAAGTCCTGACACAATACTGTCAAAGGAGAACCGTTTGTTCTTTCTCCGGTGTGAAAAGGTGAAATTTCTATGCTCCTATTCCCTCTCTATGTATATCTCTGCAACCTACGGAAATTGTAGAGCGCCGGTGAATTGGTTCCTGAAATTAAGAAATTGATAACCAAGCCTTATCCCATTGAGTGGGGTTGGCTACATGAATCAAACAACGCCATAGTGTTCTATCAAAAAACATGTCTTCTCCAACTCATTAATCTTTAGGTCCTTTTTAATAGTTTCTCTTATAGTCTTTCTAGGTCTTCCTCTAGGTCTCCAACTCATATATCCTGTAGGAAAATGTTTCAAATTAGTTCATGCTTCCTTAAGTTGAATATTTCAAATCCAATTGATCCATGAAAAATTGCTTATGAAAGTTGAATTAGTTCTCATGTTAGCTTAACATAGTACATAACTTATGAATGACTAAAATGACCGAACAATTTCAATGATATTTTCCGTAATTTGTTTTTAGAGACTGATCTAACATCACCCTACAATTTAAGGAAATAAAGCGGGGCTAAACTCAACAAATATCTTTTACTTTATGATGATGGGATATCTTATAATTGTAGTGTATTGCTTGCAGTGTGGATCAGGAAGATCAGTTGCACCTATCAAGGCTGGTTTTGTTGCTCGTGTTGGCCGTAGGACTGCGGGAGGGACATGA

Protein sequence

>MS.gene41455.t1

MADEAQIDVKEEVPDIAPFDPTKKKKKKKPAVVDLDDDSVDKLAEKTENLSVSEGFDSTLAGSKKKKKKPVEISSLIDESVDAKNDDLDDHAEENEGDAVSLQPRYPWEGSDRDYQYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRTAGGT