Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41455.t1 | XP_013460480.1 | 93.7 | 270 | 16 | 1 | 1 | 270 | 1 | 269 | 1.10E-127 | 466.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41455.t1 | P55871 | 74.1 | 270 | 68 | 2 | 1 | 268 | 1 | 270 | 1.1e-99 | 364.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41455.t1 | A0A072UZG4 | 93.7 | 270 | 16 | 1 | 1 | 270 | 1 | 269 | 8.1e-128 | 466.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049255 | MS.gene41455 | 0.811463 | 6.91E-51 | -1.69E-46 |
MS.gene049341 | MS.gene41455 | 0.801072 | 1.07E-48 | -1.69E-46 |
MS.gene049756 | MS.gene41455 | 0.804868 | 1.76E-49 | -1.69E-46 |
MS.gene049825 | MS.gene41455 | 0.842737 | 2.15E-58 | -1.69E-46 |
MS.gene049873 | MS.gene41455 | 0.813999 | 1.93E-51 | -1.69E-46 |
MS.gene050277 | MS.gene41455 | 0.88829 | 6.73E-73 | -1.69E-46 |
MS.gene050303 | MS.gene41455 | 0.861786 | 8.03E-64 | -1.69E-46 |
MS.gene050916 | MS.gene41455 | 0.805647 | 1.21E-49 | -1.69E-46 |
MS.gene051063 | MS.gene41455 | 0.833661 | 4.69E-56 | -1.69E-46 |
MS.gene051241 | MS.gene41455 | 0.804683 | 1.92E-49 | -1.69E-46 |
MS.gene051245 | MS.gene41455 | 0.818001 | 2.46E-52 | -1.69E-46 |
MS.gene051330 | MS.gene41455 | 0.821264 | 4.43E-53 | -1.69E-46 |
MS.gene05134 | MS.gene41455 | 0.872 | 4.45E-67 | -1.69E-46 |
MS.gene051451 | MS.gene41455 | 0.819815 | 9.52E-53 | -1.69E-46 |
MS.gene051633 | MS.gene41455 | 0.841743 | 3.95E-58 | -1.69E-46 |
MS.gene051746 | MS.gene41455 | 0.840443 | 8.67E-58 | -1.69E-46 |
MS.gene051748 | MS.gene41455 | 0.811469 | 6.89E-51 | -1.69E-46 |
MS.gene051757 | MS.gene41455 | 0.80727 | 5.49E-50 | -1.69E-46 |
MS.gene05188 | MS.gene41455 | 0.814049 | 1.88E-51 | -1.69E-46 |
MS.gene051903 | MS.gene41455 | 0.848583 | 5.59E-60 | -1.69E-46 |
MS.gene052286 | MS.gene41455 | 0.838894 | 2.19E-57 | -1.69E-46 |
MS.gene052302 | MS.gene41455 | 0.833824 | 4.27E-56 | -1.69E-46 |
MS.gene052376 | MS.gene41455 | 0.84128 | 5.23E-58 | -1.69E-46 |
MS.gene052947 | MS.gene41455 | 0.845351 | 4.29E-59 | -1.69E-46 |
MS.gene053080 | MS.gene41455 | 0.802406 | 5.69E-49 | -1.69E-46 |
MS.gene053109 | MS.gene41455 | 0.825283 | 5.10E-54 | -1.69E-46 |
MS.gene053216 | MS.gene41455 | 0.826403 | 2.77E-54 | -1.69E-46 |
MS.gene053294 | MS.gene41455 | 0.818493 | 1.90E-52 | -1.69E-46 |
MS.gene055162 | MS.gene41455 | 0.824612 | 7.35E-54 | -1.69E-46 |
MS.gene05517 | MS.gene41455 | 0.801673 | 8.06E-49 | -1.69E-46 |
MS.gene055424 | MS.gene41455 | 0.801037 | 1.09E-48 | -1.69E-46 |
MS.gene055512 | MS.gene41455 | 0.800964 | 1.13E-48 | -1.69E-46 |
MS.gene055555 | MS.gene41455 | 0.8155 | 8.96E-52 | -1.69E-46 |
MS.gene055603 | MS.gene41455 | 0.810632 | 1.05E-50 | -1.69E-46 |
MS.gene055808 | MS.gene41455 | 0.853542 | 2.23E-61 | -1.69E-46 |
MS.gene056091 | MS.gene41455 | 0.825786 | 3.88E-54 | -1.69E-46 |
MS.gene056601 | MS.gene41455 | 0.82465 | 7.20E-54 | -1.69E-46 |
MS.gene056631 | MS.gene41455 | 0.878964 | 1.83E-69 | -1.69E-46 |
MS.gene056986 | MS.gene41455 | 0.804481 | 2.12E-49 | -1.69E-46 |
MS.gene057057 | MS.gene41455 | 0.814745 | 1.32E-51 | -1.69E-46 |
MS.gene057079 | MS.gene41455 | 0.839628 | 1.41E-57 | -1.69E-46 |
MS.gene057094 | MS.gene41455 | 0.826462 | 2.68E-54 | -1.69E-46 |
MS.gene057140 | MS.gene41455 | 0.846832 | 1.69E-59 | -1.69E-46 |
MS.gene057234 | MS.gene41455 | 0.859397 | 4.26E-63 | -1.69E-46 |
MS.gene057555 | MS.gene41455 | 0.820017 | 8.57E-53 | -1.69E-46 |
MS.gene057705 | MS.gene41455 | 0.819724 | 9.99E-53 | -1.69E-46 |
MS.gene05795 | MS.gene41455 | 0.858482 | 7.99E-63 | -1.69E-46 |
MS.gene057999 | MS.gene41455 | 0.804126 | 2.51E-49 | -1.69E-46 |
MS.gene058055 | MS.gene41455 | 0.827787 | 1.29E-54 | -1.69E-46 |
MS.gene058084 | MS.gene41455 | 0.80261 | 5.17E-49 | -1.69E-46 |
MS.gene058238 | MS.gene41455 | 0.889075 | 3.35E-73 | -1.69E-46 |
MS.gene058549 | MS.gene41455 | 0.812777 | 3.57E-51 | -1.69E-46 |
MS.gene058798 | MS.gene41455 | 0.802895 | 4.52E-49 | -1.69E-46 |
MS.gene058906 | MS.gene41455 | 0.851296 | 9.73E-61 | -1.69E-46 |
MS.gene059249 | MS.gene41455 | 0.825854 | 3.73E-54 | -1.69E-46 |
MS.gene059317 | MS.gene41455 | 0.860319 | 2.24E-63 | -1.69E-46 |
MS.gene05954 | MS.gene41455 | 0.832143 | 1.12E-55 | -1.69E-46 |
MS.gene059830 | MS.gene41455 | 0.81522 | 1.03E-51 | -1.69E-46 |
MS.gene059898 | MS.gene41455 | 0.823854 | 1.11E-53 | -1.69E-46 |
MS.gene06001 | MS.gene41455 | 0.871266 | 7.79E-67 | -1.69E-46 |
MS.gene06011 | MS.gene41455 | 0.820728 | 5.89E-53 | -1.69E-46 |
MS.gene060429 | MS.gene41455 | 0.845595 | 3.68E-59 | -1.69E-46 |
MS.gene060586 | MS.gene41455 | 0.90047 | 7.10E-78 | -1.69E-46 |
MS.gene060763 | MS.gene41455 | 0.826651 | 2.41E-54 | -1.69E-46 |
MS.gene060830 | MS.gene41455 | 0.814556 | 1.45E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene063366 | MS.gene41455 | PPI |
MS.gene41455 | MS.gene22877 | PPI |
MS.gene066163 | MS.gene41455 | PPI |
MS.gene040581 | MS.gene41455 | PPI |
MS.gene41455 | MS.gene039110 | PPI |
MS.gene003452 | MS.gene41455 | PPI |
MS.gene41455 | MS.gene63721 | PPI |
MS.gene41455 | MS.gene058030 | PPI |
MS.gene41455 | MS.gene024538 | PPI |
MS.gene52139 | MS.gene41455 | PPI |
MS.gene41455 | MS.gene061898 | PPI |
MS.gene41455 | MS.gene050556 | PPI |
MS.gene018560 | MS.gene41455 | PPI |
MS.gene41455 | MS.gene64519 | PPI |
MS.gene41455 | MS.gene060216 | PPI |
MS.gene09852 | MS.gene41455 | PPI |
MS.gene025997 | MS.gene41455 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41455.t1 | MTR_3g467620 | 98.148 | 270 | 4 | 1 | 1 | 270 | 1 | 269 | 0.0 | 540 |
MS.gene41455.t1 | MTR_5g075530 | 83.942 | 274 | 39 | 3 | 1 | 269 | 49 | 322 | 4.67e-147 | 414 |
MS.gene41455.t1 | MTR_5g075530 | 77.457 | 173 | 34 | 3 | 1 | 168 | 49 | 221 | 6.43e-68 | 210 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41455.t1 | AT5G20920 | 75.000 | 268 | 62 | 5 | 1 | 265 | 1 | 266 | 2.26e-131 | 373 |
MS.gene41455.t1 | AT5G20920 | 75.000 | 268 | 62 | 5 | 1 | 265 | 1 | 266 | 2.26e-131 | 373 |
MS.gene41455.t1 | AT5G20920 | 75.000 | 268 | 61 | 6 | 1 | 265 | 1 | 265 | 4.99e-130 | 369 |
MS.gene41455.t1 | AT3G07920 | 70.395 | 152 | 37 | 2 | 118 | 265 | 17 | 164 | 9.98e-71 | 215 |
MS.gene41455.t1 | AT5G01940 | 57.042 | 142 | 56 | 3 | 114 | 254 | 72 | 209 | 6.17e-49 | 161 |
MS.gene41455.t1 | AT5G01940 | 57.042 | 142 | 56 | 3 | 114 | 254 | 104 | 241 | 8.98e-49 | 162 |
MS.gene41455.t1 | AT5G01940 | 53.846 | 156 | 63 | 4 | 114 | 262 | 72 | 225 | 9.80e-47 | 156 |
Find 58 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCTTTCTTGCTTGCGGAAC+TGG | 0.130326 | 3.1:-52224127 | MS.gene41455:CDS |
AAAATTCCTTCGAAGTTCTT+TGG | 0.281091 | 3.1:+52224048 | None:intergenic |
CGTCGGTCTCCAGCAAGTTC+TGG | 0.286919 | 3.1:+52224576 | None:intergenic |
TCCTTTGACAGTATTGTGTC+AGG | 0.386643 | 3.1:+52223893 | None:intergenic |
CCTTGCAACCTCGTTACCCT+TGG | 0.397283 | 3.1:-52225214 | MS.gene41455:CDS |
GAGAATAATCCAGAACTTGC+TGG | 0.427102 | 3.1:-52224585 | MS.gene41455:CDS |
GATGAATATGTCATTTGCCT+TGG | 0.446437 | 3.1:-52223926 | MS.gene41455:CDS |
GGGTTTGACAGTACTTTAGC+TGG | 0.446946 | 3.1:-52225580 | MS.gene41455:CDS |
GCAACAAAACCAGCCTTGAT+AGG | 0.448200 | 3.1:+52223251 | None:intergenic |
GTTCTTTCTCCGGTGTGAAA+AGG | 0.449900 | 3.1:-52223861 | MS.gene41455:intron |
AAGAAAGCCATGACATGATC+TGG | 0.453989 | 3.1:+52224141 | None:intergenic |
GGTACAAGTGGTTCTCTAGA+TGG | 0.461160 | 3.1:-52224105 | MS.gene41455:CDS |
CTTGCAACCTCGTTACCCTT+GGG | 0.463993 | 3.1:-52225213 | MS.gene41455:CDS |
CGTGTTGGCCGTAGGACTGC+GGG | 0.465591 | 3.1:-52223227 | MS.gene41455:CDS |
TCTAGATGGACAGCAGAGAT+TGG | 0.466810 | 3.1:-52224091 | MS.gene41455:CDS |
TATTGCTTGCAGTGTGGATC+AGG | 0.472397 | 3.1:-52223287 | MS.gene41455:intron |
GCTTTCTTGCTTGCGGAACT+GGG | 0.492020 | 3.1:-52224126 | MS.gene41455:CDS |
AAGATCAGTTGCACCTATCA+AGG | 0.492968 | 3.1:-52223264 | MS.gene41455:CDS |
TGTCATGGCTTTCTTGCTTG+CGG | 0.497308 | 3.1:-52224133 | MS.gene41455:CDS |
AGAACCGTTTGTTCTTTCTC+CGG | 0.497985 | 3.1:-52223871 | MS.gene41455:CDS |
GTGCCCTCACGAAGCACTTG+TGG | 0.500600 | 3.1:+52224534 | None:intergenic |
CACACCGGAGAAAGAACAAA+CGG | 0.501705 | 3.1:+52223867 | None:intergenic |
TTGTTGCTCGTGTTGGCCGT+AGG | 0.510944 | 3.1:-52223235 | MS.gene41455:CDS |
TCAGTTGCACCTATCAAGGC+TGG | 0.525265 | 3.1:-52223260 | MS.gene41455:CDS |
ATGTCCCTCCCGCAGTCCTA+CGG | 0.525965 | 3.1:+52223219 | None:intergenic |
GATCATGCTGAAGAGAATGA+AGG | 0.536109 | 3.1:-52225248 | MS.gene41455:CDS |
AGAGATTGGTTGTGAAGGGA+AGG | 0.537518 | 3.1:-52224077 | MS.gene41455:CDS |
GAGAAGACAGAAAATCTGTC+AGG | 0.538239 | 3.1:-52225735 | MS.gene41455:intron |
ATCATGCTGAAGAGAATGAA+GGG | 0.539765 | 3.1:-52225247 | MS.gene41455:CDS |
TCCTGACACAATACTGTCAA+AGG | 0.542246 | 3.1:-52223894 | MS.gene41455:CDS |
CAGCAGAGATTGGTTGTGAA+GGG | 0.544525 | 3.1:-52224081 | MS.gene41455:CDS |
TCATCAAGATCTACCACTGC+GGG | 0.548138 | 3.1:+52225780 | None:intergenic |
ACCGACGGAGAACTGTTATG+AGG | 0.549889 | 3.1:-52224560 | MS.gene41455:CDS |
TGAAGCACAGATTGATGTGA+AGG | 0.549994 | 3.1:-52226096 | MS.gene41455:CDS |
CCCTCACGAAGCACTTGTGG+AGG | 0.572134 | 3.1:+52224537 | None:intergenic |
ACAGATTGATGTGAAGGAAG+AGG | 0.574813 | 3.1:-52226090 | MS.gene41455:CDS |
TCGTGTTGGCCGTAGGACTG+CGG | 0.579876 | 3.1:-52223228 | MS.gene41455:CDS |
GCCTCCACAAGTGCTTCGTG+AGG | 0.584535 | 3.1:-52224538 | MS.gene41455:CDS |
ACAGCAGAGATTGGTTGTGA+AGG | 0.584946 | 3.1:-52224082 | MS.gene41455:CDS |
CTTGCGGAACTGGGTACAAG+TGG | 0.589169 | 3.1:-52224117 | MS.gene41455:CDS |
CACGATCACTTCCTTCCCAA+GGG | 0.589285 | 3.1:+52225198 | None:intergenic |
GCCTCATAACAGTTCTCCGT+CGG | 0.590654 | 3.1:+52224559 | None:intergenic |
CAACCTCGTTACCCTTGGGA+AGG | 0.592495 | 3.1:-52225209 | MS.gene41455:CDS |
TTTGCACCAAAGAACTTCGA+AGG | 0.593663 | 3.1:-52224054 | MS.gene41455:CDS |
TCACGATCACTTCCTTCCCA+AGG | 0.596987 | 3.1:+52225197 | None:intergenic |
AATCTGTGCTTCATCTGCCA+TGG | 0.597125 | 3.1:+52226106 | None:intergenic |
CCAAGGGTAACGAGGTTGCA+AGG | 0.598454 | 3.1:+52225214 | None:intergenic |
TGATGATTCAGTAGACAAGT+TGG | 0.613548 | 3.1:-52225760 | MS.gene41455:CDS |
CTTCCTTCCCAAGGGTAACG+AGG | 0.616919 | 3.1:+52225206 | None:intergenic |
CCTCCACAAGTGCTTCGTGA+GGG | 0.624335 | 3.1:-52224537 | MS.gene41455:CDS |
CAGAACTTGCTGGAGACCGA+CGG | 0.631347 | 3.1:-52224575 | MS.gene41455:CDS |
TCATGCTGAAGAGAATGAAG+GGG | 0.642946 | 3.1:-52225246 | MS.gene41455:CDS |
GTTGGCCGTAGGACTGCGGG+AGG | 0.652534 | 3.1:-52223224 | MS.gene41455:CDS |
TCGGCAGCCAGATCATGTCA+TGG | 0.653346 | 3.1:-52224148 | MS.gene41455:CDS |
TGATCGTGATTATCAATACG+AGG | 0.718816 | 3.1:-52225183 | MS.gene41455:CDS |
ATCATCAAGATCTACCACTG+CGG | 0.727185 | 3.1:+52225779 | None:intergenic |
TTGGCCGTAGGACTGCGGGA+GGG | 0.729821 | 3.1:-52223223 | MS.gene41455:CDS |
TCGTGATTATCAATACGAGG+AGG | 0.739399 | 3.1:-52225180 | MS.gene41455:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATATCATTGAAATTGTT+CGG | + | chr3.1:52225895-52225914 | None:intergenic | 15.0% |
!! | CTAAAAAGAACAAAATATAT+AGG | + | chr3.1:52225376-52225395 | None:intergenic | 15.0% |
!! | TATAAGAGAAACTATTAAAA+AGG | + | chr3.1:52225687-52225706 | None:intergenic | 15.0% |
!!! | ATATTTTGGAATTTTTAACA+TGG | - | chr3.1:52224385-52224404 | MS.gene41455:intron | 15.0% |
!!! | ATATTTTTATTGTTGATTGT+AGG | - | chr3.1:52223903-52223922 | MS.gene41455:CDS | 15.0% |
!!! | TATTTTATGCTATTAAGTTT+TGG | - | chr3.1:52223635-52223654 | MS.gene41455:intron | 15.0% |
!! | AATTCTTAAGGGAAATTAAT+TGG | - | chr3.1:52224020-52224039 | MS.gene41455:intron | 20.0% |
!! | AGACATAAACAAAATGATAA+TGG | + | chr3.1:52225129-52225148 | None:intergenic | 20.0% |
!! | GTAATTTATTATTCAGTTGT+TGG | - | chr3.1:52224864-52224883 | MS.gene41455:intron | 20.0% |
!! | GTAGTTATTTGAGAAAATTA+GGG | + | chr3.1:52225001-52225020 | None:intergenic | 20.0% |
!! | GTTATCAATTTCTTAATTTC+AGG | + | chr3.1:52225565-52225584 | None:intergenic | 20.0% |
!! | TACAATTTAAGGAAATAAAG+CGG | - | chr3.1:52225952-52225971 | MS.gene41455:intron | 20.0% |
!! | TGTAGTTATTTGAGAAAATT+AGG | + | chr3.1:52225002-52225021 | None:intergenic | 20.0% |
!! | TTAATTTCCCTTAAGAATTA+AGG | + | chr3.1:52224019-52224038 | None:intergenic | 20.0% |
!!! | AACTGTTTTTGTGAATTTTA+TGG | - | chr3.1:52224816-52224835 | MS.gene41455:intron | 20.0% |
!!! | AGGTAGTATTTGTTTATTTT+TGG | - | chr3.1:52224637-52224656 | MS.gene41455:intron | 20.0% |
!!! | ATCTTTTACTTTATGATGAT+GGG | - | chr3.1:52225992-52226011 | MS.gene41455:intron | 20.0% |
!!! | CTTTATTTCCTTAAATTGTA+GGG | + | chr3.1:52225952-52225971 | None:intergenic | 20.0% |
!!! | GATTTGAAATATTCAACTTA+AGG | + | chr3.1:52225783-52225802 | None:intergenic | 20.0% |
!!! | GATTTTAATGCAATATAGAA+AGG | + | chr3.1:52225093-52225112 | None:intergenic | 20.0% |
!!! | TATCTTTTACTTTATGATGA+TGG | - | chr3.1:52225991-52226010 | MS.gene41455:intron | 20.0% |
!!! | TTTATGCTACTTTTCATATT+TGG | - | chr3.1:52224286-52224305 | MS.gene41455:intron | 20.0% |
!!! | TTTTTCTTCTTCTTTTTAGT+AGG | + | chr3.1:52223517-52223536 | None:intergenic | 20.0% |
! | AATCTGCAATTAACAAATTC+AGG | + | chr3.1:52223482-52223501 | None:intergenic | 25.0% |
! | ACAATTTAAGGAAATAAAGC+GGG | - | chr3.1:52225953-52225972 | MS.gene41455:intron | 25.0% |
! | ATATAAACACATATTTGAGG+AGG | + | chr3.1:52224438-52224457 | None:intergenic | 25.0% |
! | ATATATCATGAAGCTATTGT+TGG | + | chr3.1:52224544-52224563 | None:intergenic | 25.0% |
! | ATATCATGCCTTAATTCTTA+AGG | - | chr3.1:52224008-52224027 | MS.gene41455:intron | 25.0% |
! | ATTCAGTTGAGAAACATTTA+TGG | + | chr3.1:52224260-52224279 | None:intergenic | 25.0% |
! | TATAAATTGTGTTTGAGAGT+TGG | + | chr3.1:52223991-52224010 | None:intergenic | 25.0% |
! | TATCATGCCTTAATTCTTAA+GGG | - | chr3.1:52224009-52224028 | MS.gene41455:intron | 25.0% |
! | TCCATATAAACACATATTTG+AGG | + | chr3.1:52224441-52224460 | None:intergenic | 25.0% |
! | TCCTCAAATATGTGTTTATA+TGG | - | chr3.1:52224437-52224456 | MS.gene41455:intron | 25.0% |
!! | CAGTCTCTAAAAACAAATTA+CGG | + | chr3.1:52225918-52225937 | None:intergenic | 25.0% |
!! | CTTTCATAAGCAATTTTTCA+TGG | + | chr3.1:52225814-52225833 | None:intergenic | 25.0% |
!! | TACTTTTCATATTTGGATAG+TGG | - | chr3.1:52224293-52224312 | MS.gene41455:intron | 25.0% |
!!! | AATTTGAAACATTTTCCTAC+AGG | + | chr3.1:52225749-52225768 | None:intergenic | 25.0% |
!!! | ATTTTGGTAGTTTTATGCAT+TGG | - | chr3.1:52223279-52223298 | MS.gene41455:intron | 25.0% |
!!! | GCTTTATTTCCTTAAATTGT+AGG | + | chr3.1:52225953-52225972 | None:intergenic | 25.0% |
!!! | GTCTTTAATGTTATTTTCTG+AGG | - | chr3.1:52223657-52223676 | MS.gene41455:intron | 25.0% |
!!! | TAAGTTTGCACAATTGATTT+TGG | - | chr3.1:52223263-52223282 | MS.gene41455:CDS | 25.0% |
!!! | TGTTTTTTGATAGAACACTA+TGG | + | chr3.1:52225635-52225654 | None:intergenic | 25.0% |
!!! | TTCAAATCTCTTTGATTTGT+TGG | - | chr3.1:52223420-52223439 | MS.gene41455:intron | 25.0% |
!!! | TTCTTTTTAGTAGGATCAAA+TGG | + | chr3.1:52223508-52223527 | None:intergenic | 25.0% |
AAAATTCCTTCGAAGTTCTT+TGG | + | chr3.1:52225276-52225295 | None:intergenic | 30.0% | |
ATATATCAGTAAGTATCTCG+TGG | - | chr3.1:52225302-52225321 | MS.gene41455:intron | 30.0% | |
CAATAATTCAAATGACCTAC+AGG | + | chr3.1:52223789-52223808 | None:intergenic | 30.0% | |
CAATTTAAGGAAATAAAGCG+GGG | - | chr3.1:52225954-52225973 | MS.gene41455:intron | 30.0% | |
CACAGCCTATAAAACTAATA+TGG | + | chr3.1:52224346-52224365 | None:intergenic | 30.0% | |
GCTACATGTATAATACATGT+AGG | - | chr3.1:52224886-52224905 | MS.gene41455:intron | 30.0% | |
GTAGGTCATTTGAATTATTG+TGG | - | chr3.1:52223789-52223808 | MS.gene41455:intron | 30.0% | |
GTTTCTCTTATAGTCTTTCT+AGG | - | chr3.1:52225695-52225714 | MS.gene41455:intron | 30.0% | |
TAACAAATTCAGGCATTAGA+AGG | + | chr3.1:52223472-52223491 | None:intergenic | 30.0% | |
TAACATCACCCTACAATTTA+AGG | - | chr3.1:52225941-52225960 | MS.gene41455:intron | 30.0% | |
TCTCCAACTCATTAATCTTT+AGG | - | chr3.1:52225660-52225679 | MS.gene41455:intron | 30.0% | |
TGAGAAACATTTATGGAACT+AGG | + | chr3.1:52224253-52224272 | None:intergenic | 30.0% | |
TTGAGTCGTTGTTGTATTAT+TGG | - | chr3.1:52224508-52224527 | MS.gene41455:CDS | 30.0% | |
! | AACAACATAAAAAGCACATC+AGG | - | chr3.1:52225041-52225060 | MS.gene41455:intron | 30.0% |
! | AATCAACATACGTTTTGCAA+AGG | + | chr3.1:52224843-52224862 | None:intergenic | 30.0% |
! | AATTTTACACCGCATTTCAA+GGG | + | chr3.1:52224207-52224226 | None:intergenic | 30.0% |
! | ATAGGTCAATTTTTACTCGA+AGG | + | chr3.1:52225358-52225377 | None:intergenic | 30.0% |
! | ATATTTTTCTGTGCAGCTTT+TGG | - | chr3.1:52224690-52224709 | MS.gene41455:intron | 30.0% |
! | GCAATTTTTCATGGATCAAT+TGG | + | chr3.1:52225805-52225824 | None:intergenic | 30.0% |
! | GCATTTTCTTCTGTTATCAT+AGG | - | chr3.1:52224617-52224636 | MS.gene41455:CDS | 30.0% |
! | GTGACTGGTTATAACTTATA+AGG | - | chr3.1:52223322-52223341 | MS.gene41455:intron | 30.0% |
! | TAATTTTACACCGCATTTCA+AGG | + | chr3.1:52224208-52224227 | None:intergenic | 30.0% |
! | TAGTGACTTGTATTCTTAGT+TGG | - | chr3.1:52223394-52223413 | MS.gene41455:intron | 30.0% |
! | TATTTTTCTGTGCAGCTTTT+GGG | - | chr3.1:52224691-52224710 | MS.gene41455:intron | 30.0% |
!! | AGTTTTATAGGCTGTGTTTT+GGG | - | chr3.1:52224350-52224369 | MS.gene41455:intron | 30.0% |
!! | TACATGTAGGCATGTTTTTA+TGG | - | chr3.1:52224899-52224918 | MS.gene41455:intron | 30.0% |
!! | TGATAATGGAAGACAAAAGT+AGG | + | chr3.1:52225115-52225134 | None:intergenic | 30.0% |
!!! | TAGTTTTATAGGCTGTGTTT+TGG | - | chr3.1:52224349-52224368 | MS.gene41455:intron | 30.0% |
!!! | TGTCGCCATATTAGTTTTAT+AGG | - | chr3.1:52224338-52224357 | MS.gene41455:intron | 30.0% |
AACATTTATGGAACTAGGTG+AGG | + | chr3.1:52224248-52224267 | None:intergenic | 35.0% | |
AATTAGAACTGTTCAAGGAC+AGG | + | chr3.1:52223697-52223716 | None:intergenic | 35.0% | |
AATTTCAGGAACCAATTCAC+CGG | + | chr3.1:52225551-52225570 | None:intergenic | 35.0% | |
ACATTTATGGAACTAGGTGA+GGG | + | chr3.1:52224247-52224266 | None:intergenic | 35.0% | |
AGGCTAATTAGAACTGTTCA+AGG | + | chr3.1:52223702-52223721 | None:intergenic | 35.0% | |
ATCATGCTGAAGAGAATGAA+GGG | - | chr3.1:52224074-52224093 | MS.gene41455:CDS | 35.0% | |
ATGTATATCTCTGCAACCTA+CGG | - | chr3.1:52225512-52225531 | MS.gene41455:intron | 35.0% | |
CAATTGTGCAAACTTACATC+AGG | + | chr3.1:52223259-52223278 | None:intergenic | 35.0% | |
CAGTCACATGAAACATGTAT+AGG | + | chr3.1:52223309-52223328 | None:intergenic | 35.0% | |
CGTTGTTGTATTATTGGTGT+GGG | - | chr3.1:52224514-52224533 | MS.gene41455:CDS | 35.0% | |
CTATACATGTTTCATGTGAC+TGG | - | chr3.1:52223307-52223326 | MS.gene41455:intron | 35.0% | |
GATATACATAGAGAGGGAAT+AGG | + | chr3.1:52225501-52225520 | None:intergenic | 35.0% | |
GGACCTAAAGATTAATGAGT+TGG | + | chr3.1:52225666-52225685 | None:intergenic | 35.0% | |
TATATGGATTCTGCTCTCAA+GGG | - | chr3.1:52224453-52224472 | MS.gene41455:intron | 35.0% | |
TCGTTGTTGTATTATTGGTG+TGG | - | chr3.1:52224513-52224532 | MS.gene41455:CDS | 35.0% | |
TGATCGTGATTATCAATACG+AGG | - | chr3.1:52224138-52224157 | MS.gene41455:CDS | 35.0% | |
TGATGATTCAGTAGACAAGT+TGG | - | chr3.1:52223561-52223580 | MS.gene41455:intron | 35.0% | |
TGATGCGAAAAATGACGATT+TGG | - | chr3.1:52223957-52223976 | MS.gene41455:intron | 35.0% | |
TGCAGAGATATACATAGAGA+GGG | + | chr3.1:52225507-52225526 | None:intergenic | 35.0% | |
TTATATGGATTCTGCTCTCA+AGG | - | chr3.1:52224452-52224471 | MS.gene41455:intron | 35.0% | |
TTCCTACAGGATATATGAGT+TGG | + | chr3.1:52225736-52225755 | None:intergenic | 35.0% | |
TTGCAGAGATATACATAGAG+AGG | + | chr3.1:52225508-52225527 | None:intergenic | 35.0% | |
! | AAACCTAGACGCATTTTCTT+AGG | - | chr3.1:52224925-52224944 | MS.gene41455:intron | 35.0% |
! | CGCATTTTCTTAGGTGATTT+TGG | - | chr3.1:52224934-52224953 | MS.gene41455:intron | 35.0% |
! | GAAATTTCACCTTTTCACAC+CGG | + | chr3.1:52225472-52225491 | None:intergenic | 35.0% |
! | GATGAATATGTCATTTGCCT+TGG | - | chr3.1:52225395-52225414 | MS.gene41455:CDS | 35.0% |
! | TATTTGGATAGTGGTTCTTG+TGG | - | chr3.1:52224302-52224321 | MS.gene41455:intron | 35.0% |
!! | CTTTTAACTGCAGTTTCTGA+GGG | - | chr3.1:52223720-52223739 | MS.gene41455:intron | 35.0% |
!! | TCTCTACTTTTGCTCTTTGT+TGG | - | chr3.1:52224582-52224601 | MS.gene41455:CDS | 35.0% |
!! | TTTTAACTGCAGTTTCTGAG+GGG | - | chr3.1:52223721-52223740 | MS.gene41455:intron | 35.0% |
AAGAAAGCCATGACATGATC+TGG | + | chr3.1:52225183-52225202 | None:intergenic | 40.0% | |
AAGAAGAAGAAGAAGCCTGT+AGG | - | chr3.1:52223771-52223790 | MS.gene41455:intron | 40.0% | |
AAGATCAGTTGCACCTATCA+AGG | - | chr3.1:52226057-52226076 | MS.gene41455:intron | 40.0% | |
ACAGATTGATGTGAAGGAAG+AGG | - | chr3.1:52223231-52223250 | MS.gene41455:CDS | 40.0% | |
AGAACCGTTTGTTCTTTCTC+CGG | - | chr3.1:52225450-52225469 | MS.gene41455:intron | 40.0% | |
ATCATCAAGATCTACCACTG+CGG | + | chr3.1:52223545-52223564 | None:intergenic | 40.0% | |
ATTCTCTTCAGCATGATCTG+AGG | + | chr3.1:52224071-52224090 | None:intergenic | 40.0% | |
CCTCAGAAACTGCAGTTAAA+AGG | + | chr3.1:52223722-52223741 | None:intergenic | 40.0% | |
CTCCAACTCATATATCCTGT+AGG | - | chr3.1:52225731-52225750 | MS.gene41455:intron | 40.0% | |
GACAGAAAATCTGTCAGGTA+TGG | - | chr3.1:52223591-52223610 | MS.gene41455:intron | 40.0% | |
GAGAAGACAGAAAATCTGTC+AGG | - | chr3.1:52223586-52223605 | MS.gene41455:intron | 40.0% | |
GAGAATAATCCAGAACTTGC+TGG | - | chr3.1:52224736-52224755 | MS.gene41455:intron | 40.0% | |
GATCATGCTGAAGAGAATGA+AGG | - | chr3.1:52224073-52224092 | MS.gene41455:CDS | 40.0% | |
TCACCTAAGAAAATGCGTCT+AGG | + | chr3.1:52224931-52224950 | None:intergenic | 40.0% | |
TCATGCTGAAGAGAATGAAG+GGG | - | chr3.1:52224075-52224094 | MS.gene41455:CDS | 40.0% | |
TCCTGACACAATACTGTCAA+AGG | - | chr3.1:52225427-52225446 | MS.gene41455:intron | 40.0% | |
TCCTTTGACAGTATTGTGTC+AGG | + | chr3.1:52225431-52225450 | None:intergenic | 40.0% | |
TCGTGATTATCAATACGAGG+AGG | - | chr3.1:52224141-52224160 | MS.gene41455:CDS | 40.0% | |
TGAAGCACAGATTGATGTGA+AGG | - | chr3.1:52223225-52223244 | MS.gene41455:CDS | 40.0% | |
TTTGCACCAAAGAACTTCGA+AGG | - | chr3.1:52225267-52225286 | MS.gene41455:intron | 40.0% | |
! | GCGAAAAATGACGATTTGGA+TGG | - | chr3.1:52223961-52223980 | MS.gene41455:intron | 40.0% |
! | GTCTTGCTACCTTGTCTTTT+AGG | - | chr3.1:52225145-52225164 | MS.gene41455:intron | 40.0% |
! | TATATGAGTTGGAGACCTAG+AGG | + | chr3.1:52225725-52225744 | None:intergenic | 40.0% |
!! | CCTTTTAACTGCAGTTTCTG+AGG | - | chr3.1:52223719-52223738 | MS.gene41455:intron | 40.0% |
!! | TTATAGGCTGTGTTTTGGGT+GGG | - | chr3.1:52224354-52224373 | MS.gene41455:intron | 40.0% |
!! | TTTATAGGCTGTGTTTTGGG+TGG | - | chr3.1:52224353-52224372 | MS.gene41455:intron | 40.0% |
!!! | CCTTGTCTTTTAGGATGCAT+CGG | - | chr3.1:52225154-52225173 | MS.gene41455:intron | 40.0% |
CACACCGGAGAAAGAACAAA+CGG | + | chr3.1:52225457-52225476 | None:intergenic | 45.0% | |
CCGATGCATCCTAAAAGACA+AGG | + | chr3.1:52225157-52225176 | None:intergenic | 45.0% | |
GCAACAAAACCAGCCTTGAT+AGG | + | chr3.1:52226073-52226092 | None:intergenic | 45.0% | |
GGGTTTGACAGTACTTTAGC+TGG | - | chr3.1:52223741-52223760 | MS.gene41455:intron | 45.0% | |
GGTACAAGTGGTTCTCTAGA+TGG | - | chr3.1:52225216-52225235 | MS.gene41455:CDS | 45.0% | |
GTAGTGTATTGCTTGCAGTG+TGG | - | chr3.1:52226028-52226047 | MS.gene41455:intron | 45.0% | |
GTCTTTCTAGGTCTTCCTCT+AGG | - | chr3.1:52225707-52225726 | MS.gene41455:intron | 45.0% | |
GTTCTTTCTCCGGTGTGAAA+AGG | - | chr3.1:52225460-52225479 | MS.gene41455:intron | 45.0% | |
TATGCCTCTCCCTTGAAATG+CGG | - | chr3.1:52224195-52224214 | MS.gene41455:intron | 45.0% | |
TATTGCTTGCAGTGTGGATC+AGG | - | chr3.1:52226034-52226053 | MS.gene41455:intron | 45.0% | |
TCATCAAGATCTACCACTGC+GGG | + | chr3.1:52223544-52223563 | None:intergenic | 45.0% | |
TCTAGATGGACAGCAGAGAT+TGG | - | chr3.1:52225230-52225249 | MS.gene41455:CDS | 45.0% | |
TGTCATGGCTTTCTTGCTTG+CGG | - | chr3.1:52225188-52225207 | MS.gene41455:CDS | 45.0% | |
! | AAGCCTTATCCCATTGAGTG+GGG | - | chr3.1:52225586-52225605 | MS.gene41455:CDS | 45.0% |
! | ACAGCAGAGATTGGTTGTGA+AGG | - | chr3.1:52225239-52225258 | MS.gene41455:CDS | 45.0% |
! | AGAGATTGGTTGTGAAGGGA+AGG | - | chr3.1:52225244-52225263 | MS.gene41455:CDS | 45.0% |
! | CAAGCCTTATCCCATTGAGT+GGG | - | chr3.1:52225585-52225604 | MS.gene41455:CDS | 45.0% |
! | CAGCAGAGATTGGTTGTGAA+GGG | - | chr3.1:52225240-52225259 | MS.gene41455:CDS | 45.0% |
! | GGTGGGGTCTTTGCATATTT+TGG | - | chr3.1:52224371-52224390 | MS.gene41455:intron | 45.0% |
! | TGTCAGGACTTTTGCATCCA+AGG | + | chr3.1:52225415-52225434 | None:intergenic | 45.0% |
!! | TATAGGCTGTGTTTTGGGTG+GGG | - | chr3.1:52224355-52224374 | MS.gene41455:intron | 45.0% |
ACCGACGGAGAACTGTTATG+AGG | - | chr3.1:52224761-52224780 | MS.gene41455:intron | 50.0% | |
ATGTAGCCAACCCCACTCAA+TGG | + | chr3.1:52225599-52225618 | None:intergenic | 50.0% | |
CAACCCCACTCAATGGGATA+AGG | + | chr3.1:52225592-52225611 | None:intergenic | 50.0% | |
CACGATCACTTCCTTCCCAA+GGG | + | chr3.1:52224126-52224145 | None:intergenic | 50.0% | |
CCACTCAATGGGATAAGGCT+TGG | + | chr3.1:52225587-52225606 | None:intergenic | 50.0% | |
CTACGGAAATTGTAGAGCGC+CGG | - | chr3.1:52225529-52225548 | MS.gene41455:intron | 50.0% | |
CTTATCCCATTGAGTGGGGT+TGG | - | chr3.1:52225590-52225609 | MS.gene41455:CDS | 50.0% | |
CTTGCAACCTCGTTACCCTT+GGG | - | chr3.1:52224108-52224127 | MS.gene41455:CDS | 50.0% | |
GAAGAAAAAGAAGCCCGCAG+TGG | - | chr3.1:52223528-52223547 | MS.gene41455:intron | 50.0% | |
GCCTCATAACAGTTCTCCGT+CGG | + | chr3.1:52224765-52224784 | None:intergenic | 50.0% | |
GCTTTCTTGCTTGCGGAACT+GGG | - | chr3.1:52225195-52225214 | MS.gene41455:CDS | 50.0% | |
TACACCGCATTTCAAGGGAG+AGG | + | chr3.1:52224202-52224221 | None:intergenic | 50.0% | |
TCACGATCACTTCCTTCCCA+AGG | + | chr3.1:52224127-52224146 | None:intergenic | 50.0% | |
TCAGTTGCACCTATCAAGGC+TGG | - | chr3.1:52226061-52226080 | MS.gene41455:intron | 50.0% | |
TGTAGCCAACCCCACTCAAT+GGG | + | chr3.1:52225598-52225617 | None:intergenic | 50.0% | |
! | CCAAGCCTTATCCCATTGAG+TGG | - | chr3.1:52225584-52225603 | MS.gene41455:CDS | 50.0% |
! | TTCTGTGCAGCTTTTGGGCA+GGG | - | chr3.1:52224696-52224715 | MS.gene41455:intron | 50.0% |
! | TTTCTGTGCAGCTTTTGGGC+AGG | - | chr3.1:52224695-52224714 | MS.gene41455:intron | 50.0% |
!! | ATTGTAGAGCGCCGGTGAAT+TGG | - | chr3.1:52225537-52225556 | MS.gene41455:intron | 50.0% |
!!! | GCTGGTTTTGTTGCTCGTGT+TGG | - | chr3.1:52226079-52226098 | MS.gene41455:intron | 50.0% |
CAACCTCGTTACCCTTGGGA+AGG | - | chr3.1:52224112-52224131 | MS.gene41455:CDS | 55.0% | |
CCAAGGGTAACGAGGTTGCA+AGG | + | chr3.1:52224110-52224129 | None:intergenic | 55.0% | |
CCTCCACAAGTGCTTCGTGA+GGG | - | chr3.1:52224784-52224803 | MS.gene41455:intron | 55.0% | |
CCTTGCAACCTCGTTACCCT+TGG | - | chr3.1:52224107-52224126 | MS.gene41455:CDS | 55.0% | |
CGGCGCTCTACAATTTCCGT+AGG | + | chr3.1:52225531-52225550 | None:intergenic | 55.0% | |
CTTCCTTCCCAAGGGTAACG+AGG | + | chr3.1:52224118-52224137 | None:intergenic | 55.0% | |
CTTGCGGAACTGGGTACAAG+TGG | - | chr3.1:52225204-52225223 | MS.gene41455:CDS | 55.0% | |
GGCTTTCTTGCTTGCGGAAC+TGG | - | chr3.1:52225194-52225213 | MS.gene41455:CDS | 55.0% | |
TCGGCAGCCAGATCATGTCA+TGG | - | chr3.1:52225173-52225192 | MS.gene41455:intron | 55.0% | |
! | TTGTTGCTCGTGTTGGCCGT+AGG | - | chr3.1:52226086-52226105 | MS.gene41455:CDS | 55.0% |
!! | CAGAACTTGCTGGAGACCGA+CGG | - | chr3.1:52224746-52224765 | MS.gene41455:intron | 55.0% |
ATGTCCCTCCCGCAGTCCTA+CGG | + | chr3.1:52226105-52226124 | None:intergenic | 60.0% | |
CGTCGGTCTCCAGCAAGTTC+TGG | + | chr3.1:52224748-52224767 | None:intergenic | 60.0% | |
GCCTCCACAAGTGCTTCGTG+AGG | - | chr3.1:52224783-52224802 | MS.gene41455:intron | 60.0% | |
! | CCCTCACGAAGCACTTGTGG+AGG | + | chr3.1:52224787-52224806 | None:intergenic | 60.0% |
! | GTGCCCTCACGAAGCACTTG+TGG | + | chr3.1:52224790-52224809 | None:intergenic | 60.0% |
! | TCGTGTTGGCCGTAGGACTG+CGG | - | chr3.1:52226093-52226112 | MS.gene41455:CDS | 60.0% |
TTGGCCGTAGGACTGCGGGA+GGG | - | chr3.1:52226098-52226117 | MS.gene41455:CDS | 65.0% | |
! | CGTGTTGGCCGTAGGACTGC+GGG | - | chr3.1:52226094-52226113 | MS.gene41455:CDS | 65.0% |
GTTGGCCGTAGGACTGCGGG+AGG | - | chr3.1:52226097-52226116 | MS.gene41455:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 52223217 | 52226126 | 52223217 | ID=MS.gene41455 |
chr3.1 | mRNA | 52223217 | 52226126 | 52223217 | ID=MS.gene41455.t1;Parent=MS.gene41455 |
chr3.1 | exon | 52226082 | 52226126 | 52226082 | ID=MS.gene41455.t1.exon1;Parent=MS.gene41455.t1 |
chr3.1 | CDS | 52226082 | 52226126 | 52226082 | ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1 |
chr3.1 | exon | 52225736 | 52225844 | 52225736 | ID=MS.gene41455.t1.exon2;Parent=MS.gene41455.t1 |
chr3.1 | CDS | 52225736 | 52225844 | 52225736 | ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1 |
chr3.1 | exon | 52225555 | 52225610 | 52225555 | ID=MS.gene41455.t1.exon3;Parent=MS.gene41455.t1 |
chr3.1 | CDS | 52225555 | 52225610 | 52225555 | ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1 |
chr3.1 | exon | 52225361 | 52225418 | 52225361 | ID=MS.gene41455.t1.exon4;Parent=MS.gene41455.t1 |
chr3.1 | CDS | 52225361 | 52225418 | 52225361 | ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1 |
chr3.1 | exon | 52225181 | 52225269 | 52225181 | ID=MS.gene41455.t1.exon5;Parent=MS.gene41455.t1 |
chr3.1 | CDS | 52225181 | 52225269 | 52225181 | ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1 |
chr3.1 | exon | 52224492 | 52224637 | 52224492 | ID=MS.gene41455.t1.exon6;Parent=MS.gene41455.t1 |
chr3.1 | CDS | 52224492 | 52224637 | 52224492 | ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1 |
chr3.1 | exon | 52224034 | 52224176 | 52224034 | ID=MS.gene41455.t1.exon7;Parent=MS.gene41455.t1 |
chr3.1 | CDS | 52224034 | 52224176 | 52224034 | ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1 |
chr3.1 | exon | 52223862 | 52223947 | 52223862 | ID=MS.gene41455.t1.exon8;Parent=MS.gene41455.t1 |
chr3.1 | CDS | 52223862 | 52223947 | 52223862 | ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1 |
chr3.1 | exon | 52223217 | 52223297 | 52223217 | ID=MS.gene41455.t1.exon9;Parent=MS.gene41455.t1 |
chr3.1 | CDS | 52223217 | 52223297 | 52223217 | ID=cds.MS.gene41455.t1;Parent=MS.gene41455.t1 |
Gene Sequence |
Protein sequence |